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Additional file 5: Supplementary file 4. Promoter sequences of SsCNGCs and alleles.

Additional file 2: Supplementary file 1. Nucleotide sequences of the coding region of SsCNGCs and alleles.

Additional file 4: Supplementary file 3. Amino acid sequences of CNGCs from Arabidopsis thaliana, Oryza sativa and Zea mays.

Additional file 3: Supplementary file 2. Amino acid sequences of SsCNGCs and alleles.

Additional file 8: Fig. S1. WebLogos of the amino acid sequences alignment of B-box1, B-box2, and CCT were shown. The y-axis and x-axis indicated the conservation rate of each amino acid and the conserved sequences of the domain, respectively. The height of each letter indicates how conserved the residue is across all proteins. Fig. S2. The tertiary structure modeling of SsBBX proteins. The structure image was generated using the SWISS-MODEL software. Fig. S3. Expression patterns of the sugarcane BBX genes from the sugarcane transcriptome data in five different conditions. (a) Expression patterns of the BBX genes in the roots of Saccharum hybrid cultivar YT55 under low-potassium stress, and samples were collected at 0, 6, 12, 24, 48, and 72 h (PRJNA262715). (b) Expression patterns of the BBX genes in the leaves of Saccharum hybrid cultivar GX87–16 under cold stress, and samples were collected at 0, 0.5, 1, and 6 h (PRJNA636260). (c) Expression patterns of the BBX genes in the leaves of Saccharum hybrid cultivar Co_06022 (susceptible cultivar) and Co_8021 (resistant cultivar) after 0, 2, 6, and 10 d drought stress and recovery treatment (PRJNA590595). (d) Expression patterns of the BBX genes in the buds of Saccharum hybrid cultivar ROC22 (susceptible cultivar) and YC05–179 (resistant cultivar) after smut pathogen infection at 0, 1, 2, and 5 d (PRJCA011580). (e) Expression patterns of the BBX genes in the buds of Saccharum hybrid cultivar ROC22 (susceptible cultivar) and GT42 (resistant cultivar) after ABA treatment at 0, 1, and 6 h (PRJNA555450). The heat map was plotted with the TBtools software (v1.098), with the transcript level of the BBX genes transformed as log2 FPKM (fragments per kilobase million), ranging from blue (low expression level) to red (high expression level).

Additional file 1 The amino acid sequences of the BBX family used in this study.

Supplementary Material 6

Supplementary Material 1

El texto completo de este trabajo no está disponible en el Repositorio Académico UPC por restricciones de la casa editorial donde ha sido publicado. This research uses Supply Chain (SC) data gathered during the distribution and transportation activities of organic coffee. The purpose of this research is to analyze different ways in which crop-chain solutions are adopted in the region of Junín, Peru. The disintegration of the SC is revealed, as each cooperative member works uncoordinatedly on his own leading to different results standards with high costs and low returns. The study focused on different entities from farmers to the port of Callao of an organic coffee supply chain where disintegration is constant. The paper describes a misaligned supply chain including poorly collaboration. All problems found will be an opportunity to develop a distribution model in the organic coffee supply chain of Junín region. Revisión por pares