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373 results on '"Wolfson, Haim J."'

6. Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study

Author

Schweke, Hugo, primary, Xu, Qifang, additional, Tauriello, Gerardo, additional, Pantolini, Lorenzo, additional, Schwede, Torsten, additional, Cazals, Frédéric, additional, Lhéritier, Alix, additional, Fernandez‐Recio, Juan, additional, Rodríguez‐Lumbreras, Luis Angel, additional, Schueler‐Furman, Ora, additional, Varga, Julia K., additional, Jiménez‐García, Brian, additional, Réau, Manon F., additional, Bonvin, Alexandre M. J. J., additional, Savojardo, Castrense, additional, Martelli, Pier‐Luigi, additional, Casadio, Rita, additional, Tubiana, Jérôme, additional, Wolfson, Haim J., additional, Oliva, Romina, additional, Barradas‐Bautista, Didier, additional, Ricciardelli, Tiziana, additional, Cavallo, Luigi, additional, Venclovas, Česlovas, additional, Olechnovič, Kliment, additional, Guerois, Raphael, additional, Andreani, Jessica, additional, Martin, Juliette, additional, Wang, Xiao, additional, Terashi, Genki, additional, Sarkar, Daipayan, additional, Christoffer, Charles, additional, Aderinwale, Tunde, additional, Verburgt, Jacob, additional, Kihara, Daisuke, additional, Marchand, Anthony, additional, Correia, Bruno E., additional, Duan, Rui, additional, Qiu, Liming, additional, Xu, Xianjin, additional, Zhang, Shuang, additional, Zou, Xiaoqin, additional, Dey, Sucharita, additional, Dunbrack, Roland L., additional, Levy, Emmanuel D., additional, and Wodak, Shoshana J., additional

Published
2023
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15. Source code for the article 'ScanNet: an interpretable geometric deep learning model for structure-based protein binding site prediction'

Author

Tubiana, Jérôme, Schneidman-Duhovny, Dina, and Wolfson, Haim J.

Subjects
Protein-protein interactions, Antibody epitopes, Computational Biology, Geometric Deep Learning
Abstract

Source code for the journal article"ScanNet: an interpretable geometric deep learning model for structure-based protein binding site prediction", available fromhttps://doi.org/10.1038/s41592-022-01490-7 .Details for installation and usage are provided in the README.mdfile. This is the code version used for producing all the results shown in the paper. For the latest version, please visithttps://github.com/jertubiana/ScanNet

Published
2022

16. Recognition of Binding Patterns Common to a Set of Protein Structures

Author

Shatsky, Maxim, Shulman-Peleg, Alexandra, Nussinov, Ruth, Wolfson, Haim J., Hutchison, David, editor, Kanade, Takeo, editor, Kittler, Josef, editor, Kleinberg, Jon M., editor, Mattern, Friedemann, editor, Mitchell, John C., editor, Naor, Moni, editor, Nierstrasz, Oscar, editor, Pandu Rangan, C., editor, Steffen, Bernhard, editor, Sudan, Madhu, editor, Terzopoulos, Demetri, editor, Tygar, Dough, editor, Vardi, Moshe Y., editor, Weikum, Gerhard, editor, Istrail, Sorin, editor, Pevzner, Pavel, editor, Waterman, Michael, editor, Miyano, Satoru, editor, Mesirov, Jill, editor, Kasif, Simon, editor, and Pevzner, Pavel A., editor

Published
2005
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17. MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces

Author

Shulman-Peleg, Alexandra, Shatsky, Maxim, Nussinov, Ruth, Wolfson, Haim J., Hutchison, David, editor, Kanade, Takeo, editor, Kittler, Josef, editor, Kleinberg, Jon M., editor, Mattern, Friedemann, editor, Mitchell, John C., editor, Naor, Moni, editor, Nierstrasz, Oscar, editor, Pandu Rangan, C., editor, Steffen, Bernhard, editor, Sudan, Madhu, editor, Terzopoulos, Demetri, editor, Tygar, Dough, editor, Vardi, Moshe Y., editor, Weikum, Gerhard, editor, Istrail, Sorin, editor, Pevzner, Pavel, editor, Waterman, Michael, editor, R. Berthold, Michael, editor, Glen, Robert C., editor, Diederichs, Kay, editor, Kohlbacher, Oliver, editor, and Fischer, Ingrid, editor

Published
2005
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19. Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations

Author

Shulman-Peleg, Alexandra, Mintz, Shira, Nussinov, Ruth, Wolfson, Haim J., Hutchison, David, editor, Kanade, Takeo, editor, Kittler, Josef, editor, Kleinberg, Jon M., editor, Mattern, Friedemann, editor, Mitchell, John C., editor, Naor, Moni, editor, Nierstrasz, Oscar, editor, Pandu Rangan, C., editor, Steffen, Bernhard, editor, Sudan, Madhu, editor, Terzopoulos, Demetri, editor, Tygar, Dough, editor, Vardi, Moshe Y., editor, Weikum, Gerhard, editor, Istrail, Sorin, editor, Pevzner, Pavel, editor, Waterman, Michael, editor, Jonassen, Inge, editor, and Kim, Junhyong, editor

Published
2004
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23. PepCrawler: A Fast RRT–Like Algorithm for High–Resolution Refinement and Binding–Affinity Estimation of Peptide Inhibitors : (Abstract)

Author

Donsky, Elad, Wolfson, Haim J., Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Nierstrasz, Oscar, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Sudan, Madhu, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Vardi, Moshe Y., Series editor, Weikum, Gerhard, Series editor, Istrail, Sorin, editor, Pevzner, Pavel, editor, Waterman, Michael S., editor, Przytycka, Teresa M., editor, and Sagot, Marie-France, editor

Published
2011
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27. 3-D docking of protein molecules

Author

Fischer, Daniel, Norel, Raquel, Nussinov, Ruth, Wolfson, Haim J., Goos, Gerhard, editor, Hartmanis, Juris, editor, Apostolico, Alberto, editor, Crochemore, Maxime, editor, Galil, Zvi, editor, and Manber, Udi, editor

Published
1993
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30. Model-based object recognition by geometric hashing

Author

Wolfson, Haim J., Goos, G., editor, Hartmanis, J., editor, Barstow, D., editor, Brauer, W., editor, Brinch Hansen, P., editor, Gries, D., editor, Luckham, D., editor, Moler, C., editor, Pnueli, A., editor, Seegmüller, G., editor, Stoer, J., editor, Wirth, N., editor, and Faugeras, O., editor

Published
1990
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36. Multiple docking for protein structure prediction

Author

Inbar, Yuval, Wolfson, Haim J., and Nussinov, Ruth

Subjects
Proteins -- Structure, Combinatorial analysis -- Research, Robotics -- Research, Computers and office automation industries, Engineering and manufacturing industries, Research
Abstract

Abstract Protein structure prediction and protein docking prediction are two related problems in molecular biology. We suggest the use of multiple docking in the process of protein structure prediction. Once [...]

Published
2005

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