9 results on '"Willoughby WR"'
Search Results
2. Frequency drift in MR spectroscopy at 3T
- Author
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Hui, SCN, Mikkelsen, M, Zollner, HJ, Ahluwalia, V, Alcauter, S, Baltusis, L, Barany, DA, Barlow, LR, Becker, R, Berman, J, Berrington, A, Bhattacharyya, PK, Blicher, JU, Bogner, W, Brown, MS, Calhoun, VD, Castillo, R, Cecil, KM, Choi, YB, Chu, WCW, Clarke, WT, Craven, AR, Cuypers, K, Dacko, M, de la Fuente-Sandoval, C, Desmond, P, Domagalik, A, Dumont, J, Duncan, NW, Dydak, U, Dyke, K, Edmondson, DA, Ende, G, Ersland, L, Evans, CJ, Fermin, ASR, Ferretti, A, Fillmer, A, Gong, T, Greenhouse, I, Grist, JT, Gu, M, Harris, AD, Hatz, K, Heba, S, Heckova, E, Hegarty, JP, Heise, K-F, Honda, S, Jacobson, A, Jansen, JFA, Jenkins, CW, Johnston, SJ, Juchem, C, Kangarlu, A, Kerr, AB, Landheer, K, Lange, T, Lee, P, Levendovszky, SR, Limperopoulos, C, Liu, F, Lloyd, W, Lythgoe, DJ, Machizawa, MG, MacMillan, EL, Maddock, RJ, Manzhurtsev, A, Martinez-Gudino, ML, Miller, JJ, Mirzakhanian, H, Moreno-Ortega, M, Mullins, PG, Nakajima, S, Near, J, Noeske, R, Nordhoy, W, Oeltzschner, G, Osorio-Duran, R, Otaduy, MCG, Pasaye, EH, Peeters, R, Peltier, SJ, Pilatus, U, Polomac, N, Porges, EC, Pradhan, S, Prisciandaro, JJ, Puts, NA, Rae, CD, Reyes-Madrigal, F, Roberts, TPL, Robertson, CE, Rosenberg, JT, Rotaru, D-G, Tuura, RLO, Saleh, MG, Sandberg, K, Sangill, R, Schembri, K, Schrantee, A, Semenova, NA, Singel, D, Sitnikov, R, Smith, J, Song, Y, Stark, C, Stoffers, D, Swinnen, SP, Tain, R, Tanase, C, Tapper, S, Tegenthoff, M, Thiel, T, Thioux, M, Truong, P, van Dijk, P, Vella, N, Vidyasagar, R, Vovk, A, Wang, G, Westlye, LT, Wilbur, TK, Willoughby, WR, Wilson, M, Wittsack, H-J, Woods, AJ, Wu, Y-C, Xu, J, Lopez, MY, Yeung, DKW, Zhao, Q, Zhou, X, Zupan, G, Edden, RAE, Hui, SCN, Mikkelsen, M, Zollner, HJ, Ahluwalia, V, Alcauter, S, Baltusis, L, Barany, DA, Barlow, LR, Becker, R, Berman, J, Berrington, A, Bhattacharyya, PK, Blicher, JU, Bogner, W, Brown, MS, Calhoun, VD, Castillo, R, Cecil, KM, Choi, YB, Chu, WCW, Clarke, WT, Craven, AR, Cuypers, K, Dacko, M, de la Fuente-Sandoval, C, Desmond, P, Domagalik, A, Dumont, J, Duncan, NW, Dydak, U, Dyke, K, Edmondson, DA, Ende, G, Ersland, L, Evans, CJ, Fermin, ASR, Ferretti, A, Fillmer, A, Gong, T, Greenhouse, I, Grist, JT, Gu, M, Harris, AD, Hatz, K, Heba, S, Heckova, E, Hegarty, JP, Heise, K-F, Honda, S, Jacobson, A, Jansen, JFA, Jenkins, CW, Johnston, SJ, Juchem, C, Kangarlu, A, Kerr, AB, Landheer, K, Lange, T, Lee, P, Levendovszky, SR, Limperopoulos, C, Liu, F, Lloyd, W, Lythgoe, DJ, Machizawa, MG, MacMillan, EL, Maddock, RJ, Manzhurtsev, A, Martinez-Gudino, ML, Miller, JJ, Mirzakhanian, H, Moreno-Ortega, M, Mullins, PG, Nakajima, S, Near, J, Noeske, R, Nordhoy, W, Oeltzschner, G, Osorio-Duran, R, Otaduy, MCG, Pasaye, EH, Peeters, R, Peltier, SJ, Pilatus, U, Polomac, N, Porges, EC, Pradhan, S, Prisciandaro, JJ, Puts, NA, Rae, CD, Reyes-Madrigal, F, Roberts, TPL, Robertson, CE, Rosenberg, JT, Rotaru, D-G, Tuura, RLO, Saleh, MG, Sandberg, K, Sangill, R, Schembri, K, Schrantee, A, Semenova, NA, Singel, D, Sitnikov, R, Smith, J, Song, Y, Stark, C, Stoffers, D, Swinnen, SP, Tain, R, Tanase, C, Tapper, S, Tegenthoff, M, Thiel, T, Thioux, M, Truong, P, van Dijk, P, Vella, N, Vidyasagar, R, Vovk, A, Wang, G, Westlye, LT, Wilbur, TK, Willoughby, WR, Wilson, M, Wittsack, H-J, Woods, AJ, Wu, Y-C, Xu, J, Lopez, MY, Yeung, DKW, Zhao, Q, Zhou, X, Zupan, G, and Edden, RAE
- Abstract
PURPOSE: Heating of gradient coils and passive shim components is a common cause of instability in the B0 field, especially when gradient intensive sequences are used. The aim of the study was to set a benchmark for typical drift encountered during MR spectroscopy (MRS) to assess the need for real-time field-frequency locking on MRI scanners by comparing field drift data from a large number of sites. METHOD: A standardized protocol was developed for 80 participating sites using 99 3T MR scanners from 3 major vendors. Phantom water signals were acquired before and after an EPI sequence. The protocol consisted of: minimal preparatory imaging; a short pre-fMRI PRESS; a ten-minute fMRI acquisition; and a long post-fMRI PRESS acquisition. Both pre- and post-fMRI PRESS were non-water suppressed. Real-time frequency stabilization/adjustment was switched off when appropriate. Sixty scanners repeated the protocol for a second dataset. In addition, a three-hour post-fMRI MRS acquisition was performed at one site to observe change of gradient temperature and drift rate. Spectral analysis was performed using MATLAB. Frequency drift in pre-fMRI PRESS data were compared with the first 5:20 minutes and the full 30:00 minutes of data after fMRI. Median (interquartile range) drifts were measured and showed in violin plot. Paired t-tests were performed to compare frequency drift pre- and post-fMRI. A simulated in vivo spectrum was generated using FID-A to visualize the effect of the observed frequency drifts. The simulated spectrum was convolved with the frequency trace for the most extreme cases. Impacts of frequency drifts on NAA and GABA were also simulated as a function of linear drift. Data from the repeated protocol were compared with the corresponding first dataset using Pearson's and intraclass correlation coefficients (ICC). RESULTS: Of the data collected from 99 scanners, 4 were excluded due to various reasons. Thus, data from 95 scanners were ultimately analyzed. For the f
- Published
- 2021
3. Harmonized Multisite MRI-Based Quantification of Human Liver Fat and Stiffness: A Pilot Study.
- Author
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Carmichael OT, Singh M, Bashir A, Russell AM, Bolding M, Redden DT, Storrs J, Willoughby WR, Howard-Claudio C, Hsia DS, Kimberly RP, Gray ME, Ravussin E, and Denney TS
- Subjects
- Adult, Humans, Pilot Projects, Reproducibility of Results, Liver pathology, Magnetic Resonance Imaging methods, Obesity pathology, Non-alcoholic Fatty Liver Disease pathology
- Abstract
Background: Nonalcoholic fatty liver disease (NAFLD) is a leading cause of end-stage liver disease. NAFLD diagnosis and follow-up relies on a combination of clinical data, liver imaging, and/or liver biopsy. However, intersite imaging differences impede diagnostic consistency and reduce the repeatability of the multisite clinical trials necessary to develop effective treatments., Purpose/hypothesis: The goal of this pilot study was to harmonize commercially available 3 T magnetic resonance imaging (MRI) measurements of liver fat and stiffness in human participants across academic sites and MRI vendors., Study Type: Cohort., Subjects: Four community-dwelling adults with obesity., Field Strength/sequence: 1.5 and 3 T, multiecho 3D imaging, PRESS, and GRE., Assessment: Harmonized proton density fat fraction (PDFF) and magnetic resonance spectroscopy (MRS) protocols were used to quantify the FF of synthetic phantoms and human participants with obesity using standard acquisition parameters at four sites that had four different 3 T MRI instruments. In addition, a harmonized magnetic resonance elastography (MRE) protocol was used to quantify liver stiffness among participants at two different sites at 1.5 and 3 T field strengths. Data were sent to a single data coordinating site for postprocessing., Statistical Tests: Linear regression in MATLAB, ICC analyses using SAS 9.4, one-sided 95% confidence intervals for the ICC., Results: PDFF and MRS FF measurements were highly repeatable among sites in both humans and phantoms. MRE measurements of liver stiffness in three individuals at two sites using one 1.5 T and one 3 T instrument showed repeatability that was high although lower than that of MRS and PDFF., Conclusions: We demonstrated harmonization of PDFF, MRS, and MRE-based quantification of liver fat and stiffness through synthetic phantoms, traveling participants, and standardization of postprocessing analysis. Multisite MRI harmonization could contribute to multisite clinical trials assessing the efficacy of interventions and therapy for NAFLD., Level of Evidence: 2 TECHNICAL EFFICACY STAGE: 2., (© 2023 International Society for Magnetic Resonance in Medicine.)
- Published
- 2024
- Full Text
- View/download PDF
4. Magnetic Resonance Imaging of Focused Ultrasound Radiation Force Strain Fields for Discrimination of Solid and Liquid Phases.
- Author
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Willoughby WR, Odéen H, Jones J, and Bolding M
- Subjects
- Magnetic Resonance Imaging methods, Diffusion Magnetic Resonance Imaging, Ultrasonic Waves, Gelatin, High-Intensity Focused Ultrasound Ablation methods
- Abstract
Objective: Focused ultrasound (FUS) has become a non-invasive option for some surgical procedures, including tumor ablation and thalamotomy. Extension of magnetic resonance (MR) imaging-guided focused ultrasound for ablation of slowly perfused cerebrovascular lesions requires a novel treatment monitoring method that does not rely on thermometry or high-frequency Doppler methods. The goal of this study was to evaluate the sensitivity and specificity of strain estimates based on MR acoustic radiation force imaging (MR-ARFI) for differentiation of solids and liquids., Methods: Strain fields were estimated in gelatin-based tissue-mimicking focused ultrasound phantoms on the basis of apparent displacement fields measured by MR-ARFI. MR-ARFI and diffusion-weighted imaging (DWI) measurements were made before and after FUS-induced heating to evaluate the performance of displacement, strain and apparent diffusion coefficient (ADC) measurements for the discrimination of solid and liquid phases., Results: As revealed by receiver operating characteristic analyses, axial normal strain and shear strain components performed significantly better than axial displacement measurements alone when predicting whether a gelatin had melted. Additional measurements must be made to estimate certain strain components, so this trade-off must be considered when developing clinical strategies. ADC had the best overall performance, but DWI is vulnerable to signal dropouts and susceptibility artifacts near cerebrovascular lesions, so this metric may have limited clinical applicability., Conclusion: Strain components based on MR-ARFI apparent displacement measurements perform better than apparent displacement measurements alone at discriminating between solids and liquids. These methods are applicable to FUS treatment monitoring and evaluation of mechanical tissue properties in vivo., Competing Interests: Declaration of competing interest The authors declare no competing interests., (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
- Full Text
- View/download PDF
5. Somatotopic Mapping of the Fingers in the Somatosensory Cortex Using Functional Magnetic Resonance Imaging: A Review of Literature.
- Author
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Janko D, Thoenes K, Park D, Willoughby WR, Horton M, and Bolding M
- Abstract
Multiple studies have demonstrated finger somatotopy in humans and other primates using a variety of brain mapping techniques including functional magnetic resonance imaging (fMRI). Here, we review the literature to better understand the reliability of fMRI for mapping the somatosensory cortex. We have chosen to focus on the hand and fingers as these areas have the largest representation and have been the subject of the largest number of somatotopic mapping experiments. Regardless of the methods used, individual finger somatosensory maps were found to be organized across Brodmann areas (BAs) 3b, 1, and 2 in lateral-to-medial and inferior-to-superior fashion moving from the thumb to the pinky. However, some consistent discrepancies are found that depend principally on the method used to stimulate the hand and fingers. Therefore, we suggest that a comparative analysis of different types of stimulation be performed to address the differences described in this review., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Janko, Thoenes, Park, Willoughby, Horton and Bolding.)
- Published
- 2022
- Full Text
- View/download PDF
6. Frequency drift in MR spectroscopy at 3T.
- Author
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Hui SCN, Mikkelsen M, Zöllner HJ, Ahluwalia V, Alcauter S, Baltusis L, Barany DA, Barlow LR, Becker R, Berman JI, Berrington A, Bhattacharyya PK, Blicher JU, Bogner W, Brown MS, Calhoun VD, Castillo R, Cecil KM, Choi YB, Chu WCW, Clarke WT, Craven AR, Cuypers K, Dacko M, de la Fuente-Sandoval C, Desmond P, Domagalik A, Dumont J, Duncan NW, Dydak U, Dyke K, Edmondson DA, Ende G, Ersland L, Evans CJ, Fermin ASR, Ferretti A, Fillmer A, Gong T, Greenhouse I, Grist JT, Gu M, Harris AD, Hat K, Heba S, Heckova E, Hegarty JP 2nd, Heise KF, Honda S, Jacobson A, Jansen JFA, Jenkins CW, Johnston SJ, Juchem C, Kangarlu A, Kerr AB, Landheer K, Lange T, Lee P, Levendovszky SR, Limperopoulos C, Liu F, Lloyd W, Lythgoe DJ, Machizawa MG, MacMillan EL, Maddock RJ, Manzhurtsev AV, Martinez-Gudino ML, Miller JJ, Mirzakhanian H, Moreno-Ortega M, Mullins PG, Nakajima S, Near J, Noeske R, Nordhøy W, Oeltzschner G, Osorio-Duran R, Otaduy MCG, Pasaye EH, Peeters R, Peltier SJ, Pilatus U, Polomac N, Porges EC, Pradhan S, Prisciandaro JJ, Puts NA, Rae CD, Reyes-Madrigal F, Roberts TPL, Robertson CE, Rosenberg JT, Rotaru DG, O'Gorman Tuura RL, Saleh MG, Sandberg K, Sangill R, Schembri K, Schrantee A, Semenova NA, Singel D, Sitnikov R, Smith J, Song Y, Stark C, Stoffers D, Swinnen SP, Tain R, Tanase C, Tapper S, Tegenthoff M, Thiel T, Thioux M, Truong P, van Dijk P, Vella N, Vidyasagar R, Vovk A, Wang G, Westlye LT, Wilbur TK, Willoughby WR, Wilson M, Wittsack HJ, Woods AJ, Wu YC, Xu J, Lopez MY, Yeung DKW, Zhao Q, Zhou X, Zupan G, and Edden RAE
- Subjects
- Humans, Magnetic Resonance Imaging methods, Magnetic Resonance Spectroscopy methods, Brain diagnostic imaging, Brain metabolism, Data Analysis, Databases, Factual standards, Magnetic Resonance Imaging standards, Magnetic Resonance Spectroscopy standards
- Abstract
Purpose: Heating of gradient coils and passive shim components is a common cause of instability in the B
0 field, especially when gradient intensive sequences are used. The aim of the study was to set a benchmark for typical drift encountered during MR spectroscopy (MRS) to assess the need for real-time field-frequency locking on MRI scanners by comparing field drift data from a large number of sites., Method: A standardized protocol was developed for 80 participating sites using 99 3T MR scanners from 3 major vendors. Phantom water signals were acquired before and after an EPI sequence. The protocol consisted of: minimal preparatory imaging; a short pre-fMRI PRESS; a ten-minute fMRI acquisition; and a long post-fMRI PRESS acquisition. Both pre- and post-fMRI PRESS were non-water suppressed. Real-time frequency stabilization/adjustment was switched off when appropriate. Sixty scanners repeated the protocol for a second dataset. In addition, a three-hour post-fMRI MRS acquisition was performed at one site to observe change of gradient temperature and drift rate. Spectral analysis was performed using MATLAB. Frequency drift in pre-fMRI PRESS data were compared with the first 5:20 minutes and the full 30:00 minutes of data after fMRI. Median (interquartile range) drifts were measured and showed in violin plot. Paired t-tests were performed to compare frequency drift pre- and post-fMRI. A simulated in vivo spectrum was generated using FID-A to visualize the effect of the observed frequency drifts. The simulated spectrum was convolved with the frequency trace for the most extreme cases. Impacts of frequency drifts on NAA and GABA were also simulated as a function of linear drift. Data from the repeated protocol were compared with the corresponding first dataset using Pearson's and intraclass correlation coefficients (ICC)., Results: Of the data collected from 99 scanners, 4 were excluded due to various reasons. Thus, data from 95 scanners were ultimately analyzed. For the first 5:20 min (64 transients), median (interquartile range) drift was 0.44 (1.29) Hz before fMRI and 0.83 (1.29) Hz after. This increased to 3.15 (4.02) Hz for the full 30 min (360 transients) run. Average drift rates were 0.29 Hz/min before fMRI and 0.43 Hz/min after. Paired t-tests indicated that drift increased after fMRI, as expected (p < 0.05). Simulated spectra convolved with the frequency drift showed that the intensity of the NAA singlet was reduced by up to 26%, 44 % and 18% for GE, Philips and Siemens scanners after fMRI, respectively. ICCs indicated good agreement between datasets acquired on separate days. The single site long acquisition showed drift rate was reduced to 0.03 Hz/min approximately three hours after fMRI., Discussion: This study analyzed frequency drift data from 95 3T MRI scanners. Median levels of drift were relatively low (5-min average under 1 Hz), but the most extreme cases suffered from higher levels of drift. The extent of drift varied across scanners which both linear and nonlinear drifts were observed., Competing Interests: Declaration of Competing Interest Jack J. Miller would like to acknowledge the support of a Novo Nordisk Research Fellowship run in conjunction with the University of Oxford. Francisco Reyes-Madrigal has served as a speaker for Janssen (Johnson & Johnson) and AstraZeneca. Marc Thioux and Pim van Dijk were supported by The Netherlands Organization for Health Research and Development (ZonMW) and the Dorhout Mees Foundation. All other authors have no conflict of interest to declare., (Copyright © 2021. Published by Elsevier Inc.)- Published
- 2021
- Full Text
- View/download PDF
7. X-ray excited luminescence spectroscopy and imaging with NaGdF 4 :Eu and Tb.
- Author
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Ranasinghe M, Arifuzzaman M, Rajamanthrilage AC, Willoughby WR, Dickey A, McMillen C, Kolis JW, Bolding M, and Anker JN
- Abstract
X-ray excited optical luminescence from nanophosphors can be used to selectively generate light in tissue for imaging and stimulating light-responsive materials and cells. Herein, we synthesized X-ray scintillating NaGdF
4 :Eu and Tb nanophosphors via co-precipitate and hydrothermal methods, encapsulated with silica, functionalized with biotin, and characterized by X-ray excited optical luminescence spectroscopy and imaging. The nanophosphors synthesized by co-precipitate method were ∼90 and ∼106 nm in diameter, respectively, with hydrothermally synthesized particles showing the highest luminescence intensity. More importantly, we investigated the effect of thermal annealing/calcination on the X-ray excited luminescence spectra and intensity. At above 1000 °C, the luminescence intensity increased, but particles fused together. Coating with a 15 nm thick silica shell prevented particle fusion and enabled silane-based chemical functionalization, although luminescence decreased largely due to the increased mass of non-luminescent material. We observed an increase in luminesce intensity with temperature until at 400 °C. At above 600 °C, NaGdF4 :Eu@SiO2 converts to NaGd9 Si6 O26 :Eu, an X-ray scintillator brighter than annealed NPs at 400 °C and dimmer than NPs synthesized using the hydrothermal method. The particles generate light through tissue and can be selectively excited using a focused X-ray source for imaging and light generation applications. The particles also act as MRI contrast agents for multi-modal localization., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)- Published
- 2021
- Full Text
- View/download PDF
8. Somatotopic Arrangement of the Human Primary Somatosensory Cortex Derived From Functional Magnetic Resonance Imaging.
- Author
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Willoughby WR, Thoenes K, and Bolding M
- Abstract
Functional magnetic resonance imaging (fMRI) was used to estimate neuronal activity in the primary somatosensory cortex of six participants undergoing cutaneous tactile stimulation on skin areas spread across the entire body. Differences between the accepted somatotopic maps derived from Penfield's work and those generated by this fMRI study were sought, including representational transpositions or replications across the cortex. MR-safe pneumatic devices mimicking the action of a Wartenberg wheel supplied touch stimuli in eight areas. Seven were on the left side of the body: foot, lower, and upper leg, trunk beneath ribcage, anterior forearm, middle fingertip, and neck above the collarbone. The eighth area was the glabella. Activation magnitude was estimated as the maximum cross-correlation coefficient at a certain phase shift between ideal time series and measured blood oxygen level dependent (BOLD) time courses on the cortical surface. Maximally correlated clusters associated with each cutaneous area were calculated, and cortical magnification factors were estimated. Activity correlated to lower limb stimulation was observed in the paracentral lobule and superomedial postcentral region. Correlations to upper extremity stimulation were observed in the postcentral area adjacent to the motor hand knob. Activity correlated to trunk, face and neck stimulation was localized in the superomedial one-third of the postcentral region, which differed from Penfield's cortical homunculus., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Willoughby, Thoenes and Bolding.)
- Published
- 2021
- Full Text
- View/download PDF
9. Focused ultrasound blood brain barrier opening mediated delivery of MRI-visible albumin nanoclusters to the rat brain for localized drug delivery with temporal control.
- Author
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Rich MC, Sherwood J, Bartley AF, Whitsitt QA, Lee M, Willoughby WR, Dobrunz LE, Bao Y, Lubin FD, and Bolding M
- Subjects
- Albumins, Animals, Brain diagnostic imaging, Drug Delivery Systems, Magnetic Resonance Imaging, Microbubbles, Rats, Blood-Brain Barrier, Pharmaceutical Preparations
- Abstract
There is an ongoing need for noninvasive tools to manipulate brain activity with molecular, spatial and temporal specificity. Here we have investigated the use of MRI-visible, albumin-based nanoclusters for noninvasive, localized and temporally specific drug delivery to the rat brain. We demonstrated that IV injected nanoclusters could be deposited into target brain regions via focused ultrasound facilitated blood brain barrier opening. We showed that nanocluster location could be confirmed in vivo with MRI. Additionally, following confirmation of nanocluster delivery, release of the nanocluster payload into brain tissue can be triggered by a second focused ultrasound treatment performed without circulating microbubbles. Release of glutamate from nanoclusters in vivo caused enhanced c-Fos expression, indicating that the loading capacity of the nanoclusters is sufficient to induce neuronal activation. This novel technique for noninvasive stereotactic drug delivery to the brain with temporal specificity could provide a new way to study brain circuits in vivo preclinically with high relevance for clinical translation., Competing Interests: Declaration of Competing Interest None., (Copyright © 2020 Elsevier B.V. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
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