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Binturong (Arctictis binturong) is a threatened carnivore that inhabits the forests of South and Southeast Asia. Despite its wide range, binturong is relatively scarce across its habitat distribution and is currently under the threat of poaching and illegal trade. Captive breeding has unfortunately been conducted rather haphazardly with a lack of origin record maintained, implicating potential risks to the management such as inbreeding or genetic swamping. This study thus aims to characterise the phylogenetic relationship of Indonesian binturong within the context of Southeast Asian binturong and further probe the distinctness of lineages originating from Java, Sumatra, Indonesian Borneo, and Bangka using Cytochrome B (CytB) and Cytochrome C Oxidase Subunit 1 (CO1). Genetic distance, phylogram topology, and haplotype analysis of both encoding genes further corroborate the distinctness of Java, Borneo, and Bangka binturong from other binturong from Indochinese regions such as India, Laos, and Myanmar. Search for prospective single nucleotide polymorphism markers to discriminate island lineages consistently found that each Java, Bangka, and Bornean binturong be distinct from each other and other lineages, especially when assessed using haplotype-based clustering. Assigning binturong originated from Sumatra is nonetheless more complicated, suggesting the possibility. Our findings substantiated the much-needed systematic research of Southeast Asian binturong as ex-situ insurance population management grows in Indonesia and other parts of the world to protect the diversity of binturong lineages and their corresponding unique evolutionary history. [ABSTRACT FROM AUTHOR]

The study of veterinary forensics is a field of science that is developing rapidly in the world of veterinary medicine. Veterinary forensics plays a crucial role in investigating and resolving cases involving animals, either as subjects or objects in incidents and ensuring the collection of all possible biological and physical evidence. Given the close relationship between humans and animals, numerous significant cases arise that are pertinent to veterinary forensics. The current research aimed to determine early post-mortem changes in pigs, providing insights into animal mortality in real-world scenarios. Observations were made on seven male Yorkshire pigs, aged 3 months old, with an average weight of 30.1 kg. Pigs were observed at four different post-mortem intervals, including 2,4,6, and 8 hours after death, with initial observations at the time of death serving as the control. Observations of changes in the eye sclera, eye lens, eyeball temperature, and eyeball pressure were carried out at each time interval. Results at the 2nd and 4th hours post-mortem showed no macroscopic changes in the eye sclera and eye lens, but there were changes in eye pressure. By the 6th and 8th hours, changes in the sclera and eye lens showed desiccation in the area of the sclera and the eye lens, which became increasingly cloudy. The eyeball temperature measurement values from the 2nd to 8th hour of the study revealed a significant decrease in eyeball pressure. The results of this study indicated observable changes in the eyes can be used as a basic alternative method for calculating the introductory postmortem interval in animals in the future. There was a significant decrease in eyeball temperature, and eyeball compactness, as significant differences in the eye sclera, and eye lens at 2, 4, 6, and 8 hours post-mortem, compared to the time of death. These variables offer crucial insights into early post-mortem changes in pigs, using the eyes as the primary focus of observation. [ABSTRACT FROM AUTHOR]

This study aims to identify and characterize receptor binding sites (RBS) and antigenic sites (HVR-I and II) of the S1 gene fragment of the infectious bronchitis virus (IBV) isolated and propagated from commercial chickens in Java Region to monitor recent circulating virus. The samples in this study were the organs which indicated infectious bronchitis infection. The stages of this research consisted of making virus suspensions, isolation, and propagation, as well as molecular detection and characterization of viruses. Virus isolation and propagation were carried out on chicken embryonated eggs aged 11 days via the allantoic route. Culture confirmation was performed by RT-PCR of the S1 gene fragment, followed by sequencing and bioinformatics analysis. The 168-hour propagation was observed in both dwarfed and curled embryos of two isolates from 11 isolates detected as IBV-positive. Phylogenetic tree construction resulted in all isolates being grouped as GI-19 genotype (QX-like). Amino acid identity among QX-like strains was calculated at 87-100%. A total of 210 predicted amino acid residues were observed, including 31 substitutions and 2 deletions. Conclusions of this study were identified and characterized as GI-19 genotype (QX-like) IBV with amino acid changes on S1 fragment from breeder, broiler, and layer chickens in Java Region. [ABSTRACT FROM AUTHOR]

Infectious bronchitis (IB) is an important viral disease that impacts poultry productivity, according to many studies. The main important infectious bronchitis virus (IBV) protein, spike glycoprotein subunit 1 (S1), plays a role in pathogenicity and immunogenicity. Conventional molecular detection and analysis of the S1 gene still face many challenges due to its hypervariability. In Indonesia, there were only a few reports on partial S1 gene analysis of IBVs; thus far, there have been no phylogenetic or in-silico approaches to their S1 complete gene. This study aims to reveal molecular pathogenicity and immunogenicity features on the S1 complete gene of IBVs from Indonesia. We analyzed fourteen IBV isolates using conventional RT-PCR and Sanger sequencing and then aligned their verified S1 complete sequences with other Indonesian GI-19 IBVs from Genbank for molecular phylogenetic and in-silico analysis. Phylogenetic analysis consisted of amino acid polymorphism and identity, as well as phylogenetic tree construction. As part of the in-silico analysis, we used proteins that have homology and immunoinformatic predictions (B-cell epitope and N-glycosylation). Molecular phylogenetic analysis revealed the division of the Indonesian GI-19 IBVs into two distinct groups. These groups had different amino acid variations at receptor binding sites, hypervariable antigenic sites, and cleavage sites. We also calculated the amino acid identity at 95.4-98.3%. In-silico studies revealed significant similarities in B-cell epitopes, distinct N-glycosylation sites, and the suggestion of a homotrimer protein structure. We found that the S1 full gene of two different groups of GI-19 IBVs (QX strain) from Indonesia predicted changes in their pathogenicity and immunogenicity. [ABSTRACT FROM AUTHOR]

Coccidiosis is the costliest disease in the rabbit industry. The kits do not obtain maternal immunity against the diseases and therefore suckling to weaning period being the riskiest time of infection. To date, control of coccidiosis is relied on the use of chemical coccidiostat as a drug or as the substance in feed. Whilst, continuous exposure to antibiotics develops resistance and contamination in the carcass. There is no commercially provided vaccine to prevent rabbit coccidiosis cases. In this report, we processed precocious lines from the strain of Yogyakarta origin by using selection pressure to attenuate Eimeria spp. The vaccine candidate composed of 50% of each Eimeria media and Eimeria intestinalis were given orally to initiate protective immunity against rabbit coccidiosis. The vaccinated groups with 5 x 102 oocyst dosage exhibited 95% less total oocyst excretion compared to the non-vaccinated group. Our experiment showed no mortality and without any significantly detrimental response of vaccinated rabbits during the observation time (P

Objective: The results of G1 and G4 polymorphisms as litter-size (LS) markers of ewes remain contradictory. The aim was to evaluate the impact of G1 (c.260 G>A) and G4 (c.721 G>A) polymorphisms on the LS of sheep by synthesizing data from multiple previous studies. Methods: Data were extracted from 14 eligible articles. The genotypes of G1 and G4 polymorphisms were homozygous wild-type (WW), heterozygous (WM), and homozygous mutanttype (MM). The standardized mean difference (SMD) method using random effect models was employed to determine the effect size of G1 and G4 polymorphisms on LS under dominant, recessive, additive, and co-dominant genetic models. Heterogeneity was analyzed with the I2 statistic index. Publication bias was depicted with funnel plots and tested by Egger's and Begg's tests. Results: The study showed that the correlation between G1 polymorphism and LS in sheep was not significant (p > 0.05) under all genetic models. The influence of G4 polymorphism on the LS of sheep was found significantly (p < 0.05) under dominant [SMD = 0.28, I2 = 0% (no heterogeneity)] and co-dominant [SMD = -0.14, I2 = 36% (moderate heterogeneity)] genetic models. The WM genotype of G4 polymorphism increased LS, while the MM genotype reduced LS in sheep. Publication bias among G1 and G4 polymorphism studies was absent in all genetic models. Conclusion: Thus, the study revealed that G4 polymorphism could be a potential genetic marker for LS in ewes. On the contrary, G1 polymorphism has no association with the LS of ewes. [ABSTRACT FROM AUTHOR]

The Androgen Receptor (AR) Gene’s expression is essential during puberty and testes maturation, which is also used as a reference for Turkey’s breeding program. Therefore, this study aims to develop and optimize two primer sets for studying relative expression using qPCR technology. The primers were designed to amplify specific regions in the AR gene as the main target, and the β-actin gene as an internal control. They were tested using in-silico and amplicon sequencing, as well as efficiency calculation with a constructed standard curve from serially diluted reactions. Based on the sequencing methods, the primers amplified the corresponding regions of the respective targets. The primer for AR gene had an efficiency of 98.03%, a slope of -3.37, and an R2 of 0.995, while that of the β-actin gene had an efficiency of 98.01%, a slope of -3.371, and an R2 of 0.999. The two efficiencies exceeded the standard (93 -103%) value and the melting curve analysis showed that no non-specific amplification was discovered for both primers. According to the tests, the primers are suggested as acceptable to be used for the relative expression study of the AR gene in Turkey.

The success of animal husbandry is supported by good animal and environmental health management practices. This study examined the correlation between the sheep farmer’s characteristics and the animal and environmental health management practices. The data collected by direct interviews with 48 respondents in Batur Village, Banjarnegara. Indonesia. The aspects of animal (exercise, grooming, wool shearing, supplement feeding, and water drinking) and environmental (sheepfold sanitation, waste processing, and waste removal) health management practices were divided into three categories, namely low, medium, and high levels. The results showed that 83.3% of respondents were in the low-level following by medium (14.6%) and high (2.1%) levels of animal health management. Furthermore, on the environmental health management shows, 27.1% of respondents were in the low level, 60.4% in the medium level, and 12.5% in the high level. There was a significant relationship between farmers’ characteristics (informal education, livestock farming experience, and the number of sheep) and animal health management practice. A significant relationship was also shown between formal education, livestock purpose, livestock experience, and number of sheep by farmers toward environmental health management practice. It may conclude that the low and medium levels of animal and environmental health management practices were dominant in Batur Village.