175 results on '"Wibe A. de Jong"'
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2. Exploring finite temperature properties of materials with quantum computers
- Author
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Connor Powers, Lindsay Bassman Oftelie, Daan Camps, and Wibe A. de Jong
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Medicine ,Science - Abstract
Abstract Thermal properties of nanomaterials are crucial to not only improving our fundamental understanding of condensed matter systems, but also to developing novel materials for applications spanning research and industry. Since quantum effects arise at the nano-scale, these systems are difficult to simulate on classical computers. Quantum computers can efficiently simulate quantum many-body systems, yet current quantum algorithms for calculating thermal properties of these systems incur significant computational costs in that they either prepare the full thermal state on the quantum computer, or they must sample a number of pure states from a distribution that grows with system size. Canonical thermal pure quantum (TPQ) states provide a promising path to estimating thermal properties of quantum materials as they neither require preparation of the full thermal state nor require a growing number of samples with system size. Here, we present an algorithm for preparing canonical TPQ states on quantum computers. We compare three different circuit implementations for the algorithm and demonstrate their capabilities in estimating thermal properties of quantum materials. Due to its increasing accuracy with system size and flexibility in implementation, we anticipate that this method will enable finite temperature explorations of relevant quantum materials on near-term quantum computers.
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- 2023
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3. Constant-depth circuits for dynamic simulations of materials on quantum computers
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Lindsay Bassman, Roel Van Beeumen, Ed Younis, Ethan Smith, Costin Iancu, and Wibe A. de Jong
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Quantum simulation ,Quantum computation ,Quantum circuit synthesis ,Materials simulation ,Dynamic simulation ,Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
Abstract Dynamic simulation of materials is a promising application for near-term quantum computers. Current algorithms for Hamiltonian simulation, however, produce circuits that grow in depth with increasing simulation time, limiting feasible simulations to short-time dynamics. Here, we present a method for generating circuits that are constant in depth with increasing simulation time for a specific subset of one-dimensional (1D) materials Hamiltonians, thereby enabling simulations out to arbitrarily long times. Furthermore, by removing the effective limit on the number of feasibly simulatable time-steps, the constant-depth circuits enable Trotter error to be made negligibly small by allowing simulations to be broken into arbitrarily many time-steps. For an N-spin system, the constant-depth circuit contains only O ( N 2 ) $\mathcal {O}(N^{2})$ CNOT gates. Such compact circuits enable us to successfully execute long-time dynamic simulation of ubiquitous models, such as the transverse field Ising and XY models, on current quantum hardware for systems of up to 5 qubits without the need for complex error mitigation techniques. Aside from enabling long-time dynamic simulations with minimal Trotter error for a specific subset of 1D Hamiltonians, our constant-depth circuits can advance materials simulations on quantum computers more broadly in a number of indirect ways.
- Published
- 2022
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4. Real-Time Krylov Theory for Quantum Computing Algorithms
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Yizhi Shen, Katherine Klymko, James Sud, David B. Williams-Young, Wibe A. de Jong, and Norm M. Tubman
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Physics ,QC1-999 - Abstract
Quantum computers provide new avenues to access ground and excited state properties of systems otherwise difficult to simulate on classical hardware. New approaches using subspaces generated by real-time evolution have shown efficiency in extracting eigenstate information, but the full capabilities of such approaches are still not understood. In recent work, we developed the variational quantum phase estimation (VQPE) method, a compact and efficient real-time algorithm to extract eigenvalues on quantum hardware. Here we build on that work by theoretically and numerically exploring a generalized Krylov scheme where the Krylov subspace is constructed through a parametrized real-time evolution, which applies to the VQPE algorithm as well as others. We establish an error bound that justifies the fast convergence of our spectral approximation. We also derive how the overlap with high energy eigenstates becomes suppressed from real-time subspace diagonalization and we visualize the process that shows the signature phase cancellations at specific eigenenergies. We investigate various algorithm implementations and consider performance when stochasticity is added to the target Hamiltonian in the form of spectral statistics. To demonstrate the practicality of such real-time evolution, we discuss its application to fundamental problems in quantum computation such as electronic structure predictions for strongly correlated systems.
- Published
- 2023
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5. Quantum Simulation for High-Energy Physics
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Christian W. Bauer, Zohreh Davoudi, A. Baha Balantekin, Tanmoy Bhattacharya, Marcela Carena, Wibe A. de Jong, Patrick Draper, Aida El-Khadra, Nate Gemelke, Masanori Hanada, Dmitri Kharzeev, Henry Lamm, Ying-Ying Li, Junyu Liu, Mikhail Lukin, Yannick Meurice, Christopher Monroe, Benjamin Nachman, Guido Pagano, John Preskill, Enrico Rinaldi, Alessandro Roggero, David I. Santiago, Martin J. Savage, Irfan Siddiqi, George Siopsis, David Van Zanten, Nathan Wiebe, Yukari Yamauchi, Kübra Yeter-Aydeniz, and Silvia Zorzetti
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Physics ,QC1-999 ,Computer software ,QA76.75-76.765 - Abstract
It is for the first time that quantum simulation for high-energy physics (HEP) is studied in the U.S. decadal particle-physics community planning, and in fact until recently, this was not considered a mainstream topic in the community. This fact speaks of a remarkable rate of growth of this subfield over the past few years, stimulated by the impressive advancements in quantum information sciences (QIS) and associated technologies over the past decade, and the significant investment in this area by the government and private sectors in the U.S. and other countries. High-energy physicists have quickly identified problems of importance to our understanding of nature at the most fundamental level, from tiniest distances to cosmological extents, that are intractable with classical computers but may benefit from quantum advantage. They have initiated, and continue to carry out, a vigorous program in theory, algorithm, and hardware co-design for simulations of relevance to the HEP mission. This Roadmap is an attempt to bring this exciting and yet challenging area of research to the spotlight, and to elaborate on what the promises, requirements, challenges, and potential solutions are over the next decade and beyond.
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- 2023
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6. Correction: Constant-depth circuits for dynamic simulations of materials on quantum computers
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Lindsay Bassman Oftelie, Roel Van Beeumen, Ed Younis, Ethan Smith, Costin Iancu, and Wibe A. de Jong
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Materials of engineering and construction. Mechanics of materials ,TA401-492 - Published
- 2022
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7. On the Efficient Evaluation of the Exchange Correlation Potential on Graphics Processing Unit Clusters
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David B. Williams-Young, Wibe A. de Jong, Hubertus J. J. van Dam, and Chao Yang
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density functional theory ,graphics processing unit ,high-performance computing ,parallel computing ,quantum chemistry ,Chemistry ,QD1-999 - Abstract
The predominance of Kohn–Sham density functional theory (KS-DFT) for the theoretical treatment of large experimentally relevant systems in molecular chemistry and materials science relies primarily on the existence of efficient software implementations which are capable of leveraging the latest advances in modern high-performance computing (HPC). With recent trends in HPC leading toward increasing reliance on heterogeneous accelerator-based architectures such as graphics processing units (GPU), existing code bases must embrace these architectural advances to maintain the high levels of performance that have come to be expected for these methods. In this work, we purpose a three-level parallelism scheme for the distributed numerical integration of the exchange-correlation (XC) potential in the Gaussian basis set discretization of the Kohn–Sham equations on large computing clusters consisting of multiple GPUs per compute node. In addition, we purpose and demonstrate the efficacy of the use of batched kernels, including batched level-3 BLAS operations, in achieving high levels of performance on the GPU. We demonstrate the performance and scalability of the implementation of the purposed method in the NWChemEx software package by comparing to the existing scalable CPU XC integration in NWChem.
- Published
- 2020
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8. Real-Time Evolution for Ultracompact Hamiltonian Eigenstates on Quantum Hardware
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Katherine Klymko, Carlos Mejuto-Zaera, Stephen J. Cotton, Filip Wudarski, Miroslav Urbanek, Diptarka Hait, Martin Head-Gordon, K. Birgitta Whaley, Jonathan Moussa, Nathan Wiebe, Wibe A. de Jong, and Norm M. Tubman
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Physics ,QC1-999 ,Computer software ,QA76.75-76.765 - Abstract
In this work we present a detailed analysis of variational quantum phase estimation (VQPE), a method based on real-time evolution for ground- and excited-state estimation on near-term hardware. We derive the theoretical ground on which the approach stands, and demonstrate that it provides one of the most compact variational expansions to date for solving strongly correlated Hamiltonians, when starting from an appropriate reference state. At the center of VQPE lies a set of equations, with a simple geometrical interpretation, which provides conditions for the time evolution grid in order to decouple eigenstates out of the set of time-evolved expansion states, and connects the method to the classical filter-diagonalization algorithm. Furthermore, we introduce what we call the unitary formulation of VQPE, in which the number of matrix elements that need to be measured scales linearly with the number of expansion states, and we provide an analysis of the effects of noise that substantially improves previous considerations. The unitary formulation allows for a direct comparison to iterative phase estimation. Our results mark VQPE as both a natural and highly efficient quantum algorithm for ground- and excited-state calculations of general many-body systems. We demonstrate a hardware implementation of VQPE for the transverse field Ising model. Furthermore, we illustrate its power on a paradigmatic example of strong correlation (Cr_{2} in the def2-SVP basis set), and show that it is possible to reach chemical accuracy with as few as approximately 50 time steps.
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- 2022
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9. Open chemistry: RESTful web APIs, JSON, NWChem and the modern web application
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Marcus D. Hanwell, Wibe A. de Jong, and Christopher J. Harris
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Chemistry ,Web ,Data ,Semantic ,NWChem ,JSON ,Information technology ,T58.5-58.64 ,QD1-999 - Abstract
Abstract An end-to-end platform for chemical science research has been developed that integrates data from computational and experimental approaches through a modern web-based interface. The platform offers an interactive visualization and analytics environment that functions well on mobile, laptop and desktop devices. It offers pragmatic solutions to ensure that large and complex data sets are more accessible. Existing desktop applications/frameworks were extended to integrate with high-performance computing resources, and offer command-line tools to automate interaction—connecting distributed teams to this software platform on their own terms. The platform was developed openly, and all source code hosted on the GitHub platform with automated deployment possible using Ansible coupled with standard Ubuntu-based machine images deployed to cloud machines. The platform is designed to enable teams to reap the benefits of the connected web—going beyond what conventional search and analytics platforms offer in this area. It also has the goal of offering federated instances, that can be customized to the sites/research performed. Data gets stored using JSON, extending upon previous approaches using XML, building structures that support computational chemistry calculations. These structures were developed to make it easy to process data across different languages, and send data to a JavaScript-based web client.
- Published
- 2017
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10. Engineered thermalization and cooling of quantum many-body systems
- Author
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Mekena Metcalf, Jonathan E. Moussa, Wibe A. de Jong, and Mohan Sarovar
- Subjects
Physics ,QC1-999 - Abstract
We develop a scheme for engineering genuine thermal states in analog quantum simulation platforms by coupling local degrees of freedom to driven, dissipative ancilla pseudospins. We demonstrate the scheme in a many-body quantum spin lattice simulation setting. A Born-Markov master equation describing the dynamics of the many-body system is developed, and we show that if the ancilla energies are periodically modulated, with a carefully chosen hierarchy of timescales, one can effectively thermalize the many-body system. Through analysis of the time-dependent dynamical generator, we determine the conditions under which the true thermal state is an approximate dynamical fixed point for general system Hamiltonians. Finally, we evaluate the thermalization protocol through numerical simulation and discuss prospects for implementation on current quantum simulation hardware.
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- 2020
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11. Numerical Circuit Synthesis and Compilation for Multi-State Preparation.
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Aaron Szasz, Ed Younis, and Wibe A. de Jong
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- 2023
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12. HamLib: A Library of Hamiltonians for Benchmarking Quantum Algorithms and Hardware.
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Nicolas P. D. Sawaya, Daniel Marti-Dafcik, Yang Ho, Daniel P. Tabor, David Esteban Bernal Neira, Alicia B. Magann, Shavindra P. Premaratne, Pradeep Dubey, Anne Y. Matsuura, Nathan Bishop, Wibe A. de Jong, Simon Benjamin, Ojas D. Parekh, Norm M. Tubman, Katherine Klymko, and Daan Camps
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- 2023
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13. Algebraic Compression of Free Fermionic Quantum Circuits: Particle Creation, Arbitrary Lattices and Controlled Evolution.
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Efekan Kökcü, Daan Camps, Lindsay Bassman Oftelie, Wibe A. de Jong, Roel Van Beeumen, and Alexander F. Kemper
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- 2023
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14. Composable Programming of Hybrid Workflows for Quantum Simulation.
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Thien Nguyen, Lindsay Bassman Oftelie, Dmitry I. Lyakh, Alexander J. McCaskey, Vicente Leyton-Ortega, Raphael C. Pooser, Wael R. Elwasif, Travis S. Humble, and Wibe A. de Jong
- Published
- 2021
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15. Spatial Graph Attention and Curiosity-driven Policy for Antiviral Drug Discovery.
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Yulun Wu, Nicholas Choma, Andrew Deru Chen, Mikaela Cashman, érica Teixeira Prates, Verónica G. Melesse Vergara, Manesh Shah, Austin Clyde, Thomas S. Brettin, Wibe Albert de Jong, Neeraj Kumar, Martha S. Head, Rick L. Stevens, Peter Nugent, Daniel A. Jacobson, and James B. Brown
- Published
- 2022
16. Experimental and Theoretical Approaches to Actinide Chemistry
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John K. Gibson, Wibe A. de Jong, John K. Gibson, Wibe A. de Jong
- Published
- 2018
17. Towards Highly scalable Ab Initio Molecular Dynamics (AIMD) Simulations on the Intel Knights Landing Manycore Processor.
- Author
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Mathias Jacquelin, Wibe A. de Jong, and Eric J. Bylaska
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- 2017
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18. Towards a better understanding of on and off target effects of the lymphocyte-specific kinase LCK for the development of novel and safer pharmaceuticals.
- Author
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Xiaofei Zhang, Amir Kucharski, Wibe A. de Jong, and Sally R. Ellingson
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- 2017
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19. Performance Evaluation of NWChem Ab-Initio Molecular Dynamics (AIMD) Simulations on the Intel® Xeon Phi™ Processor.
- Author
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Eric J. Bylaska, Mathias Jacquelin, Wibe A. de Jong, Jeff R. Hammond, and Michael Klemm
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- 2017
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20. Tris(carbene)borates; alternatives to cyclopentadienyls in organolanthanide chemistry
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Amy N. Price, Ankur K. Gupta, Wibe A. de Jong, and Polly L. Arnold
- Subjects
Inorganic Chemistry - Abstract
The chemistry of the tris-carbene anion phenyltris(3-alkyl-imidazoline-2-yliden-1-yl)borate, [C3Me]− ligand, is initiated in the f-block.
- Published
- 2023
21. ArQTiC: A Full-stack Software Package for Simulating Materials on Quantum Computers
- Author
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Lindsay Bassman, Connor Powers, and Wibe A. De Jong
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Quantum Physics ,Quantum materials ,quant-ph ,physics.comp-ph ,high-level programming ,FOS: Physical sciences ,quantum simulations ,General Medicine ,Computational Physics (physics.comp-ph) ,full-stack software ,Quantum Physics (quant-ph) ,Physics - Computational Physics - Abstract
ArQTiC is an open-source, full-stack software package built for the simulations of materials on quantum computers. It currently can simulate materials that can be modeled by any Hamiltonian derived from a generic, one-dimensional, time-dependent Heisenberg Hamiltonain. ArQTiC includes modules for generating quantum programs for real- and imaginary-time evolution, quantum circuit optimization, connection to various quantum backends via the cloud, and post-processing of quantum results. By enabling users to seamlessly perform and analyze materials simulations on quantum computers by simply providing a minimal input text file, ArQTiC opens this field to a broader community of scientists from a wider range of scientific domains., Comment: 8 pages, 7 figures
- Published
- 2022
22. Computing the Many-Body Green’s Function with Adaptive Variational Quantum Dynamics
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Niladri Gomes, David B. Williams-Young, and Wibe A. de Jong
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Physical and Theoretical Chemistry ,Computer Science Applications - Published
- 2023
23. PluginPlay: Enabling exascale scientific software one module at a time
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Ryan M. Richard, Kristopher Keipert, Jonathan Waldrop, Murat Keçeli, David Williams-Young, Raymond Bair, Jeffery Boschen, Zachery Crandall, Kevin Gasperich, Quazi Ishtiaque Mahmud, Ajay Panyala, Edward Valeev, Hubertus van Dam, Wibe A. de Jong, and Theresa L. Windus
- Subjects
General Physics and Astronomy ,Physical and Theoretical Chemistry - Abstract
For many computational chemistry packages, being able to efficiently and effectively scale across an exascale cluster is a heroic feat. Collective experience from the Department of Energy’s Exascale Computing Project suggests that achieving exascale performance requires far more planning, design, and optimization than scaling to petascale. In many cases, entire rewrites of software are necessary to address fundamental algorithmic bottlenecks. This in turn requires a tremendous amount of resources and development time, resources that cannot reasonably be afforded by every computational science project. It thus becomes imperative that computational science transition to a more sustainable paradigm. Key to such a paradigm is modular software. While the importance of modular software is widely recognized, what is perhaps not so widely appreciated is the effort still required to leverage modular software in a sustainable manner. The present manuscript introduces PluginPlay, https://github.com/NWChemEx-Project/PluginPlay, an inversion-of-control framework designed to facilitate developing, maintaining, and sustaining modular scientific software packages. This manuscript focuses on the design aspects of PluginPlay and how they specifically influence the performance of the resulting package. Although, PluginPlay serves as the framework for the NWChemEx package, PluginPlay is not tied to NWChemEx or even computational chemistry. We thus anticipate PluginPlay to prove to be a generally useful tool for a number of computational science packages looking to transition to the exascale.
- Published
- 2023
24. Reactions of U+ with H2, D2, and HD Studied by Guided Ion Beam Tandem Mass Spectrometry and Theory
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P. B. Armentrout, Wibe A. de Jong, JungSoo Kim, Wen-Jing Zhang, and Maria Demireva
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Ion beam ,Chemistry ,Thermochemistry ,Physical chemistry ,Reactivity (chemistry) ,Reaction intermediate ,Physical and Theoretical Chemistry ,Bond energy ,Kinetic energy ,Bond-dissociation energy ,Ion - Abstract
The kinetic energy-dependent reactions of the atomic actinide uranium cation (U+) with H2, D2, and HD were examined by guided ion beam tandem mass spectrometry. An average 0 K bond dissociation energy of D0(U+ - H) = 2.48 ± 0.06 eV is obtained by analysis of the endothermic product ion cross sections. Quantum chemistry calculations were performed for comparison with experimental thermochemistry, including high-level CASSCF-CASPT2-RASSI calculations of the spin-orbit corrections. CCSD(T) and the CASSCF levels show excellent agreement with experiment, whereas B3LYP and PBE0 slightly overestimate and the M06 approach badly underestimates the bond energy for UH+. Theory was also used to investigate the electronic structures of the reaction intermediates and potential energy surfaces. The experimental product branching ratio for the reaction of U+ with HD indicates that these reactions occur primarily via a direct reaction mechanism, despite the presence of a deep-well for UH2+ formation according to theory. The reactivity and hydride bond energy for U+ are compared with those for transition metal, lanthanide, and actinide cations, and periodic trends are discussed. These comparisons suggest that the 5f electrons on uranium are largely core and uninvolved in the reactive chemistry.
- Published
- 2021
25. Computing Free Energies with Fluctuation Relations on Quantum Computers
- Author
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Lindsay Bassman Oftelie, Katherine Klymko, Diyi Liu, Norm M. Tubman, and Wibe A. de Jong
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General Physics ,Quantum Physics ,Statistical Mechanics (cond-mat.stat-mech) ,FOS: Physical sciences ,General Physics and Astronomy ,Mathematical Sciences ,Networking and Information Technology R&D ,Engineering ,Affordable and Clean Energy ,quant-ph ,Physical Sciences ,Quantum Physics (quant-ph) ,cond-mat.stat-mech ,Condensed Matter - Statistical Mechanics - Abstract
Fluctuation relations allow for the computation of equilibrium properties, like free energy, from an ensemble of non-equilibrium dynamics simulations. Computing them for quantum systems, however, can be difficult, as performing dynamic simulations of such systems is exponentially hard on classical computers. Quantum computers can alleviate this hurdle, as they can efficiently simulate quantum systems. Here, we present an algorithm utilizing a fluctuation relation known as the Jarzynski equality to approximate free energy differences of quantum systems on a quantum computer. We discuss under which conditions our approximation becomes exact, and under which conditions it serves as a strict upper bound. Furthermore, we successfully demonstrate a proof-of-concept of our algorithm using the transverse field Ising model on a real quantum processor. The free energy is a central thermodynamic property that allows one to compute virtually any equilibrium property of a physical system. Thus, as quantum hardware continues to improve, our algorithm may serve as a valuable tool in a wide range of applications including the construction of phase diagrams, prediction of transport properties and reaction constants, and computer-aided drug design in the future., 6 pages, 3 figures, 1 algorithm
- Published
- 2022
26. Quantum simulation of nonequilibrium dynamics and thermalization in the Schwinger model
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Wibe A. de Jong, Kyle Lee, James Mulligan, Mateusz Płoskoń, Felix Ringer, and Xiaojun Yao
- Subjects
Quantum Physics ,Nuclear Theory ,High Energy Physics - Lattice (hep-lat) ,FOS: Physical sciences ,Molecular ,Atomic ,Nuclear & Particles Physics ,Nuclear Theory (nucl-th) ,High Energy Physics - Phenomenology ,High Energy Physics - Phenomenology (hep-ph) ,Particle and Plasma Physics ,High Energy Physics - Lattice ,Nuclear ,Quantum Physics (quant-ph) ,Astronomical and Space Sciences - Abstract
We present simulations of non-equilibrium dynamics of quantum field theories on digital quantum computers. As a representative example, we consider the Schwinger model, a 1+1 dimensional U(1) gauge theory, coupled through a Yukawa-type interaction to a thermal environment described by a scalar field theory. We use the Hamiltonian formulation of the Schwinger model discretized on a spatial lattice. With the thermal scalar fields traced out, the Schwinger model can be treated as an open quantum system and its real-time dynamics are governed by a Lindblad equation in the Markovian limit. The interaction with the environment ultimately drives the system to thermal equilibrium. In the quantum Brownian motion limit, the Lindblad equation is related to a field theoretical Caldeira-Leggett equation. By using the Stinespring dilation theorem with ancillary qubits, we perform studies of both the non-equilibrium dynamics and the preparation of a thermal state in the Schwinger model using IBM's simulator and quantum devices. The real-time dynamics of field theories as open quantum systems and the thermal state preparation studied here are relevant for a variety of applications in nuclear and particle physics, quantum information and cosmology., 18 pages, 8 figures; v2: minor change in appendix; v3: minor change; v4: published version
- Published
- 2022
27. Algebraic compression of quantum circuits for Hamiltonian evolution
- Author
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Efekan Kökcü, Daan Camps, Lindsay Bassman Oftelie, J. K. Freericks, Wibe A. de Jong, Roel Van Beeumen, and Alexander F. Kemper
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Quantum Physics ,General Physics ,Physical Sciences ,Chemical Sciences ,FOS: Mathematics ,FOS: Physical sciences ,Numerical Analysis (math.NA) ,Mathematics - Numerical Analysis ,Quantum Physics (quant-ph) ,Mathematical Sciences - Abstract
Unitary evolution under a time-dependent Hamiltonian is a key component of simulation on quantum hardware. Synthesizing the corresponding quantum circuit is typically done by breaking the evolution into small time steps, also known as Trotterization, which leads to circuits the depth of which scales with the number of steps. When the circuit elements are limited to a subset of SU(4) - or equivalently, when the Hamiltonian may be mapped onto free fermionic models - several identities exist that combine and simplify the circuit. Based on this, we present an algorithm that compresses the Trotter steps into a single block of quantum gates using algebraic relations between adjacent circuit elements. This results in a fixed depth time evolution for certain classes of Hamiltonians. We explicitly show how this algorithm works for several spin models, and demonstrate its use for adiabatic state preparation of the transverse field Ising model.
- Published
- 2022
28. The Effect of Geometry, Spin, and Orbital Optimization in Achieving Accurate, Correlated Results for Iron-Sulfur Cubanes
- Author
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Carlos Mejuto-Zaera, Demeter Tzeli, David Williams-Young, Norm M. Tubman, Mikuláš Matoušek, Jiri Brabec, Libor Veis, Sotiris S. Xantheas, and Wibe A. de Jong
- Subjects
Chemical Physics (physics.chem-ph) ,Chemical Physics ,010304 chemical physics ,Strongly Correlated Electrons (cond-mat.str-el) ,physics.chem-ph ,FOS: Physical sciences ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Computer Science Applications ,Computer Software ,Condensed Matter - Strongly Correlated Electrons ,Theoretical and Computational Chemistry ,Physics - Chemical Physics ,0103 physical sciences ,Biochemistry and Cell Biology ,Physical and Theoretical Chemistry ,cond-mat.str-el - Abstract
Iron-sulfur clusters comprise an important functional motif of the catalytic centers of biological systems, capable of enabling important chemical transformations at ambient conditions. This remarkable capability derives from a notoriously complex electronic structure that is characterized by a high density of states that is sensitive to geometric changes. The spectral sensitivity to subtle geometric changes has received little attention from fully-correlated calculations, owing partly to the exceptional computational complexity for treating these large and correlated systems accurately. To provide insight into this aspect, we report the first Complete Active Space Self Consistent Field (CASSCF) calculations for different geometries of cubane-based clusters using two complementary, fully-correlated solvers: spin-pure Adaptive Sampling Configuration Interaction (ASCI) and Density Matrix Renormalization Group (DMRG). We find that the previously established picture of a double-exchange driven magnetic structure, with minute energy gaps (< 1 mHa) between consecutive spin states, has a weak dependence on the underlying geometry. However, the spin gap between the lowest singlet and the highest spin states is strongly geometry dependent, changing by an order of magnitude upon slight deformations that are still within biologically relevant parameters. The CASSCF orbital optimization procedure, using active spaces as large as 86 electrons in 52 orbitals, was found to reduce this gap by a factor of two compared to typical mean-field orbital approaches. Our results clearly demonstrate the need for performing highly correlated calculations to unveil the challenging electronic structure of these complex catalytic centers., 16 pages, 7 figures, 6 tables plus SI (12 pages, 3 figures, 9 tables)
- Published
- 2022
29. Achieving performance portability in Gaussian basis set density functional theory on accelerator based architectures in NWChemEx
- Author
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Wibe A. de Jong, Douglas W. Doerfler, David B. Williams-Young, Abhishek Bagusetty, Hubertus J. J. van Dam, Theresa L. Windus, Chao Yang, and Álvaro Vázquez-Mayagoitia
- Subjects
Scheme (programming language) ,Computer Networks and Communications ,Computer science ,Accelerator ,Theoretical Computer Science ,Set (abstract data type) ,Software portability ,Software ,Artificial Intelligence ,computer.programming_language ,business.industry ,Design pattern ,Performance portability ,Computer Graphics and Computer-Aided Design ,Numerical integration ,Range (mathematics) ,Graphics processing unit ,Computer engineering ,Hardware and Architecture ,Key (cryptography) ,Density functional theory ,Cognitive Sciences ,business ,Distributed Computing ,computer - Abstract
The numerical integration of the exchange–correlation (XC) potential is one of the primary computational bottlenecks in Gaussian basis set Kohn–Sham density functional theory (KS-DFT). To achieve optimal performance and accuracy, care must be taken in this numerical integration to preserve local sparsity as to allow for near linear weak scaling with system size. This leads to an integration scheme with several performance critical kernels which must be hand optimized for each architecture of interest. As the set of available accelerator hardware goes more diverse, a key challenge for developers of KS-DFT software is to maintain performance portability across a wide range of computational architectures. In this work, we examine a modular software design pattern which decouples the implementation details of performance critical kernels from the expression of high-level algorithmic workflows in a device-agnostic language such as C++; thus allowing for developers to target existing and emerging accelerator hardware within a single code base. We consider the efficacy of such a design pattern in the numerical integration of the XC potential by demonstrating its ability to achieve performance portability across a set of accelerator architectures which are representative of those on current and future U.S. Department of Energy Leadership Computing Facilities.
- Published
- 2021
30. Scalable Programming Workflows for Validation of Quantum Computers
- Author
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Thien Nguyen, Lindsay Bassman Oftelie, Dmitry Lyakh, Phillip C. Lotshaw, Alexander McCaskey, Ryan S. Bennink, Vicente Leyton-Ortega, Raphael C. Pooser, Travis S. Humble, and Wibe A. de Jong
- Subjects
quantum programming ,quantum computing - Abstract
Hybrid quantum-classical workflows have become standard methods for executing variational algorithms and other quantum simulation techniques, which are key applications for noisy intermediate scale quantum (NISQ) computers. Validating these simulations is an important task which helps gauge the progress of quantum computer development, and classical simulation can serve as a tool to this end. Both exact and more scalable approximate methods with quantifiable error bounds can be used in validation tasks where the applicable metrics include the distance from a calculable ground truth, the quality of an error model fit to data, etc. Here we present a library extension that includes methods for validation of quantum simulations based on scalable hybrid workflows executable on high performance computers. We provide examples that use approximate methods based on tensor networks and stabilizer simulators to bound the error of quantum simulations on NISQ hardware.
- Published
- 2021
31. Computationally Efficient Zero Noise Extrapolation for Quantum Gate Error Mitigation
- Author
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Vincent R. Pascuzzi, Andre He, Christian W. Bauer, Wibe A. de Jong, and Benjamin Nachman
- Subjects
General Physics ,Quantum Physics ,Physical Sciences ,Chemical Sciences ,FOS: Physical sciences ,Quantum Physics (quant-ph) ,Mathematical Sciences - Abstract
Zero noise extrapolation (ZNE) is a widely used technique for gate error mitigation on near term quantum computers because it can be implemented in software and does not require knowledge of the quantum computer noise parameters. Traditional ZNE requires a significant resource overhead in terms of quantum operations. A recent proposal using a targeted (or random) instead of fixed identity insertion method (RIIM versus FIIM) requires significantly fewer quantum gates for the same formal precision. We start by showing that RIIM can allow for ZNE to be deployed on deeper circuits than FIIM, but requires many more measurements to maintain the same statistical uncertainty. We develop two extensions to FIIM and RIIM. The List Identity Insertion Method (LIIM) allows to mitigate the error from certain CNOT gates, typically those with the largest error. Set Identity Insertion Method (SIIM) naturally interpolates between the measurement-efficient FIIM and the gate-efficient RIIM, allowing to trade off fewer CNOT gates for more measurements. Finally, we investigate a way to boost the number of measurements, namely to run ZNE in parallel, utilizing as many quantum devices as are available. We explore the performance of RIIM in a parallel setting where there is a non-trivial spread in noise across sets of qubits within or across quantum computers., 10 pages, 10 figures
- Published
- 2021
32. Simulating quantum materials with digital quantum computers
- Author
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Wibe A. de Jong, Miroslav Urbanek, Jonathan Carter, Mekena Metcalf, Alexander F. Kemper, and Lindsay Bassman
- Subjects
Quantum Physics ,Physics and Astronomy (miscellaneous) ,Computer science ,Materials Science (miscellaneous) ,Computation ,Information processing ,FOS: Physical sciences ,quantum simulations ,Data science ,Atomic and Molecular Physics, and Optics ,Field (computer science) ,quantum computing ,Variety (cybernetics) ,Domain (software engineering) ,Quantum realm ,quant-ph ,materials simulations ,Electrical and Electronic Engineering ,Quantum Physics (quant-ph) ,Quantum ,Quantum computer - Abstract
Quantum materials exhibit a wide array of exotic phenomena and practically useful properties. A better understanding of these materials can provide deeper insights into fundamental physics in the quantum realm as well as advance technology for entertainment, healthcare, and sustainability. The emergence of digital quantum computers (DQCs), which can efficiently perform quantum simulations that are otherwise intractable on classical computers, provides a promising path forward for testing and analyzing the remarkable, and often counter-intuitive, behavior of quantum materials. Equipped with these new tools, scientists from diverse domains are racing towards achieving physical quantum advantage (i.e., using a quantum computer to learn new physics with a computation that cannot feasibly be run on any classical computer). The aim of this review, therefore, is to provide a summary of progress made towards this goal that is accessible to scientists across the physical sciences. We will first review the available technology and algorithms, and detail the myriad ways to represent materials on quantum computers. Next, we will showcase the simulations that have been successfully performed on currently available DQCs, emphasizing the variety of properties, both static and dynamic, that can be studied with this nascent technology. Finally, we work through two examples of how to map a materials problem onto a DQC, with full code included in the Supplementary Material. It is our hope that this review can serve as an organized overview of progress in the field for domain experts and an accessible introduction to scientists in related fields interested in beginning to perform their own simulations of quantum materials on DQCs., Comment: 46 pages, 6 figures, 1 table, Topical Review
- Published
- 2021
33. Reactions of U
- Author
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Wen-Jing, Zhang, Maria, Demireva, JungSoo, Kim, Wibe A, de Jong, and P B, Armentrout
- Abstract
The kinetic energy-dependent reactions of the atomic actinide uranium cation (U
- Published
- 2021
34. Exploring Finite Temperature Properties of Materials with Quantum Computers
- Author
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Connor Powers, Lindsay Bassman Oftelie, Daan Camps, and Wibe A. de Jong
- Subjects
Quantum Physics ,Multidisciplinary ,FOS: Physical sciences ,Quantum Physics (quant-ph) - Abstract
Thermal properties of nanomaterials are crucial to not only improving our fundamental understanding of condensed matter systems, but also to developing novel materials for applications spanning research and industry. Since quantum effects arise at the nano-scale, these systems are difficult to simulate on classical computers. Quantum computers can efficiently simulate quantum many-body systems, yet current quantum algorithms for calculating thermal properties of these systems incur significant computational costs in that they either prepare the full thermal state on the quantum computer, or they must sample a number of pure states from a distribution that grows with system size. Canonical thermal pure quantum (TPQ) states provide a promising path to estimating thermal properties of quantum materials as they neither require preparation of the full thermal state nor require a growing number of samples with system size. Here, we present an algorithm for preparing canonical TPQ states on quantum computers. We compare three different circuit implementations for the algorithm and demonstrate their capabilities in estimating thermal properties of quantum materials. Due to its increasing accuracy with system size and flexibility in implementation, we anticipate that this method will enable finite temperature explorations of relevant quantum materials on near-term quantum computers., 10 pages, 8 figures
- Published
- 2021
35. Liquid water: obtaining the right answer for the right reasons.
- Author
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Edoardo Aprà, Alistair P. Rendell, Robert J. Harrison, Vinod Tipparaju, Wibe A. de Jong, and Sotiris S. Xantheas
- Published
- 2009
- Full Text
- View/download PDF
36. QuaSiMo: A Composable Library to Program Hybrid Workflows for Quantum Simulation
- Author
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Lindsay Bassman, Wael R. Elwasif, Wibe A. de Jong, Vicente Leyton-Ortega, Dmitry I. Lyakh, Alexander McCaskey, Raphael C. Pooser, Thien Nguyen, Phillip C. Lotshaw, and Travis S. Humble
- Subjects
Scheme (programming language) ,Computer Networks and Communications ,Computer science ,Quantum simulator ,FOS: Physical sciences ,TK5101-6720 ,computer.software_genre ,quantum computing ,Theoretical Computer Science ,Set (abstract data type) ,quant-ph ,quantum information ,Electrical and Electronic Engineering ,IBM ,Quantum information ,computer.programming_language ,Quantum computer ,Quantum Physics ,Programming language ,Data structure ,Computer Science Applications ,Workflow ,Computational Theory and Mathematics ,Telecommunication ,Quantum Physics (quant-ph) ,computer - Abstract
We present a composable design scheme for the development of hybrid quantum/classical algorithms and workflows for applications of quantum simulation. Our object-oriented approach is based on constructing an expressive set of common data structures and methods that enable programming of a broad variety of complex hybrid quantum simulation applications. The abstract core of our scheme is distilled from the analysis of the current quantum simulation algorithms. Subsequently, it allows a synthesis of new hybrid algorithms and workflows via the extension, specialization, and dynamic customization of the abstract core classes defined by our design. We implement our design scheme using the hardware-agnostic programming language QCOR into the QuaSiMo library. To validate our implementation, we test and show its utility on commercial quantum processors from IBM and Rigetti, running some prototypical quantum simulations., arXiv admin note: substantial text overlap with arXiv:2101.08151
- Published
- 2021
37. From NWChem to NWChemEx: Evolving with the Computational Chemistry Landscape
- Author
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Jeff Daily, Theresa L. Windus, Ajay Panyala, David B. Williams-Young, Erdal Mutlu, Niranjan Govind, Hubertus J. J. van Dam, Suraj Kumar, Jeffery S. Boschen, Robert W. Harrison, Wibe A. de Jong, Ryan M. Richard, Peter V. Sushko, Marat Valiev, Kristopher Keipert, Karol Kowalski, Sriram Krishnamoorthy, Bo Peng, Edward F. Valeev, Bruce J. Palmer, Marcin Zalewski, T. P. Straatsma, Raymond A. Bair, Chao Yang, Murat Keçeli, Nicholas P. Bauman, Eric J. Bylaska, Jonathan M. Waldrop, and Thom H. Dunning
- Subjects
010405 organic chemistry ,business.industry ,Chemistry ,General Chemistry ,010402 general chemistry ,01 natural sciences ,Field (computer science) ,0104 chemical sciences ,Petascale computing ,Software ,Computational chemistry ,Paradigm shift ,Chemical Sciences ,business ,Massively parallel - Abstract
Since the advent of the first computers, chemists have been at the forefront of using computers to understand and solve complex chemical problems. As the hardware and software have evolved, so have the theoretical and computational chemistry methods and algorithms. Parallel computers clearly changed the common computing paradigm in the late 1970s and 80s, and the field has again seen a paradigm shift with the advent of graphical processing units. This review explores the challenges and some of the solutions in transforming software from the terascale to the petascale and now to the upcoming exascale computers. While discussing the field in general, NWChem and its redesign, NWChemEx, will be highlighted as one of the early codesign projects to take advantage of massively parallel computers and emerging software standards to enable large scientific challenges to be tackled.
- Published
- 2021
38. Mitigating depolarizing noise on quantum computers with noise-estimation circuits
- Author
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Miroslav Urbanek, Benjamin Nachman, Vincent R. Pascuzzi, Andre He, Christian W. Bauer, and Wibe A. de Jong
- Subjects
General Physics ,Quantum Physics ,Computer Science::Hardware Architecture ,Engineering ,Computer Science::Emerging Technologies ,quant-ph ,Physical Sciences ,FOS: Physical sciences ,General Physics and Astronomy ,Quantum Physics (quant-ph) ,Mathematical Sciences ,Hardware_LOGICDESIGN - Abstract
A significant problem for current quantum computers is noise. While there are many distinct noise channels, the depolarizing noise model often appropriately describes average noise for large circuits involving many qubits and gates. We present a method to mitigate the depolarizing noise by first estimating its rate with a noise-estimation circuit and then correcting the output of the target circuit using the estimated rate. The method is experimentally validated on a simulation of the Heisenberg model. We find that our approach in combination with readout-error correction, randomized compiling, and zero-noise extrapolation produces close to exact results even for circuits containing hundreds of CNOT gates. We also show analytically that zero-noise extrapolation is improved when it is applied to the output of our method.
- Published
- 2021
39. Constant-Depth Circuits for Dynamic Simulations of Materials on Quantum Computers
- Author
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Lindsay Bassman Oftelie, Roel Van Beeumen, Ed Younis, Ethan Smith, Costin Iancu, and Wibe A. de Jong
- Subjects
Quantum Physics ,Computer Science::Emerging Technologies ,quant-ph ,FOS: Physical sciences ,Quantum Physics (quant-ph) - Abstract
Dynamic simulation of materials is a promising application for near-term quantum computers. Current algorithms for Hamiltonian simulation, however, produce circuits that grow in depth with increasing simulation time, limiting feasible simulations to short-time dynamics. Here, we present a method for generating circuits that are constant in depth with increasing simulation time for a subset of one-dimensional materials Hamiltonians, thereby enabling simulations out to arbitrarily long times. Furthermore, by removing the effective limit on the number of feasibly simulatable time-steps, the constant-depth circuits enable Trotter error to be made negligibly small by allowing simulations to be broken into arbitrarily many time-steps. Composed of two-qubit matchgates on nearest-neighbor qubits, these constant-depth circuits are constructed based on a set of multi-matchgate identity relationships. For an $N$-spin system, the constant-depth circuit contains only $\mathcal{O}(N^2)$ CNOT gates. When compared to standard Hamiltonian simulation algorithms, our method generates circuits with order-of-magnitude fewer gates, which allows us to successfully simulate the long-time dynamics of systems with up to 5 spins on available quantum hardware. This paves the way for simulations of long-time dynamics for scientifically and technologically relevant quantum materials, enabling the observation of interesting and important atomic-level physics., 11 pages, 3 figures, 1 table
- Published
- 2021
40. Quantum Markov Chain Monte Carlo with Digital Dissipative Dynamics on Quantum Computers
- Author
-
Mekena Metcalf, Emma Stone, Katherine Klymko, Alexander F Kemper, Mohan Sarovar, and Wibe A de Jong
- Subjects
Quantum Physics ,Physics and Astronomy (miscellaneous) ,Statistical Mechanics (cond-mat.stat-mech) ,Materials Science (miscellaneous) ,thermal state preparation ,FOS: Physical sciences ,Atomic and Molecular Physics, and Optics ,quantum algorithm ,quant-ph ,Electrical and Electronic Engineering ,Quantum Physics (quant-ph) ,cond-mat.stat-mech ,Condensed Matter - Statistical Mechanics ,algorithmic cooling - Abstract
Modeling the dynamics of a quantum system connected to the environment is critical for advancing our understanding of complex quantum processes, as most quantum processes in nature are affected by an environment. Modeling a macroscopic environment on a quantum simulator may be achieved by coupling independent ancilla qubits that facilitate energy exchange in an appropriate manner with the system and mimic an environment. This approach requires a large, and possibly exponential number of ancillary degrees of freedom which is impractical. In contrast, we develop a digital quantum algorithm that simulates interaction with an environment using a small number of ancilla qubits. By combining periodic modulation of the ancilla energies, or spectral combing, with periodic reset operations, we are able to mimic interaction with a large environment and generate thermal states of interacting many-body systems. We evaluate the algorithm by simulating preparation of thermal states of the transverse Ising model. Our algorithm can also be viewed as a quantum Markov chain Monte Carlo process that allows sampling of the Gibbs distribution of a multivariate model. To demonstrate this we evaluate the accuracy of sampling Gibbs distributions of simple probabilistic graphical models using the algorithm.
- Published
- 2021
41. Quantum Algorithm for High Energy Physics Simulations
- Author
-
Davide Provasoli, Benjamin Philip Nachman, Wibe A. de Jong, and Christian W. Bauer
- Subjects
Quantum Physics ,General Physics ,Field (physics) ,Markov chain ,Computer science ,FOS: Physical sciences ,General Physics and Astronomy ,hep-ph ,01 natural sciences ,Mathematical Sciences ,Scattering amplitude ,High Energy Physics - Phenomenology ,High Energy Physics - Phenomenology (hep-ph) ,Engineering ,quant-ph ,0103 physical sciences ,Physical Sciences ,Quantum algorithm ,Statistical physics ,Quantum field theory ,Quantum Physics (quant-ph) ,010306 general physics ,Time complexity ,Quantum ,Quantum computer - Abstract
Particles produced in high energy collisions that are charged under one of the fundamental forces will radiate proportionally to their charge, such as photon radiation from electrons in quantum electrodynamics. At sufficiently high energies, this radiation pattern is enhanced collinear to the initiating particle, resulting in a complex, many-body quantum system. Classical Markov Chain Monte Carlo simulation approaches work well to capture many of the salient features of the shower of radiation, but cannot capture all quantum effects. We show how quantum algorithms are well-suited for describing the quantum properties of final state radiation. In particular, we develop a polynomial time quantum final state shower that accurately models the effects of intermediate spin states similar to those present in high energy electroweak showers. The algorithm is explicitly demonstrated for a simplified quantum field theory on a quantum computer., Comment: 5 pages plus 10 pages of appendices. v2 uses a newer quantum computer and includes readout and gate error corrections
- Published
- 2021
42. Composable Programming of Hybrid Workflows for Quantum Simulation
- Author
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Dmitry I. Lyakh, Travis S. Humble, Raphael C. Pooser, Alexander McCaskey, Wibe A. de Jong, Vicente Leyton-Ortega, Wael R. Elwasif, Lindsay Bassman, and Thien Nguyen
- Subjects
Scheme (programming language) ,Quantum Physics ,Computer science ,Quantum simulator ,FOS: Physical sciences ,Parallel computing ,Data structure ,quantum computing ,Set (abstract data type) ,quantum programming ,Workflow ,quant-ph ,programming languages ,IBM ,Quantum Physics (quant-ph) ,Quantum ,computer ,Stationary state ,computer.programming_language - Abstract
We present a composable design scheme for the development of hybrid quantum/classical algorithms and workflows for applications of quantum simulation. Our object-oriented approach is based on constructing an expressive set of common data structures and methods that enable programming of a broad variety of complex hybrid quantum simulation applications. The abstract core of our scheme is distilled from the analysis of the current quantum simulation algorithms. Subsequently, it allows a synthesis of new hybrid algorithms and workflows via the extension, specialization, and dynamic customization of the abstract core classes defined by our design. We implement our design scheme using the hardware-agnostic programming language QCOR into the QuaSiMo library. To validate our implementation, we test and show its utility on commercial quantum processors from IBM, running some prototypical quantum simulations.
- Published
- 2021
- Full Text
- View/download PDF
43. Classical Optimizers for Noisy Intermediate-Scale Quantum Devices
- Author
-
Ana Tudor, W. Lavrijsen, Wibe A. de Jong, Juliane Müller, and Costin Iancu
- Subjects
Hyperparameter ,Quantum Physics ,Computer science ,VQE ,Quantum noise ,FOS: Physical sciences ,Hybrid algorithm ,quantum computing ,Noise ,Range (mathematics) ,Quantum circuit ,quant-ph ,Quantum Physics (quant-ph) ,optimizers ,Algorithm ,Quantum ,Quantum computer - Abstract
We present a collection of optimizers tuned for usage on Noisy Intermediate-Scale Quantum (NISQ) devices. Optimizers have a range of applications in quantum computing, including the Variational Quantum Eigensolver (VQE) and Quantum Approximate Optimization (QAOA) algorithms. They are also used for calibration tasks, hyperparameter tuning, in machine learning, etc. We analyze the efficiency and effectiveness of different optimizers in a VQE case study. VQE is a hybrid algorithm, with a classical minimizer step driving the next evaluation on the quantum processor. While most results to date concentrated on tuning the quantum VQE circuit, we show that, in the presence of quantum noise, the classical minimizer step needs to be carefully chosen to obtain correct results. We explore state-of-the-art gradient-free optimizers capable of handling noisy, black-box, cost functions and stress-test them using a quantum circuit simulation environment with noise injection capabilities on individual gates. Our results indicate that specifically tuned optimizers are crucial to obtaining valid science results on NISQ hardware, and will likely remain necessary even for future fault tolerant circuits., 11 pages, 17 figures
- Published
- 2020
44. Resource-Efficient Chemistry on Quantum Computers with the Variational Quantum Eigensolver and the Double Unitary Coupled-Cluster Approach
- Author
-
Nicholas P. Bauman, Mekena Metcalf, Wibe A. de Jong, and Karol Kowalski
- Subjects
Chemical Physics ,010304 chemical physics ,Basis (linear algebra) ,Electronic correlation ,Quantum simulator ,01 natural sciences ,Unitary state ,Computer Science Applications ,Computer Software ,Coupled cluster ,quant-ph ,physics.comp-ph ,Theoretical and Computational Chemistry ,Qubit ,0103 physical sciences ,Statistical physics ,Biochemistry and Cell Biology ,Physical and Theoretical Chemistry ,Quantum ,Quantum computer - Abstract
Applications of quantum simulation algorithms to obtain electronic energies of molecules on noisy intermediate-scale quantum (NISQ) devices require careful consideration of resources describing the complex electron correlation effects. In modeling second-quantized problems, the biggest challenge confronted is that the number of qubits scales linearly with the size of the molecular basis. This poses a significant limitation on the size of the basis sets and the number of correlated electrons included in quantum simulations of chemical processes. To address this issue and enable more realistic simulations on NISQ computers, we employ the double unitary coupled-cluster (DUCC) method to effectively downfold correlation effects into the reduced-size orbital space, commonly referred to as the active space. Using downfolding techniques, we demonstrate that properly constructed effective Hamiltonians can capture the effect of the whole orbital space in small-size active spaces. Combining the downfolding preprocessing technique with the variational quantum eigensolver, we solve for the ground-state energy of H2, Li2, and BeH2 in the cc-pVTZ basis using the DUCC-reduced active spaces. We compare these results to full configuration-interaction and high-level coupled-cluster reference calculations.
- Published
- 2020
45. Open Chemistry, <scp>JupyterLab</scp> , <scp>REST</scp> , and quantum chemistry
- Author
-
Patrick Avery, Wibe A. de Jong, Johannes Hachmann, Mojtaba Haghighatlari, Marcus D. Hanwell, Alessandro Genova, Muammar El Khatib, and Chris Harris
- Subjects
Quantum chemical ,Rest (physics) ,Complex data type ,Computer science ,business.industry ,Condensed Matter Physics ,Automation ,Atomic and Molecular Physics, and Optics ,Visualization ,World Wide Web ,Leverage (statistics) ,The Internet ,Chemistry (relationship) ,Physical and Theoretical Chemistry ,business - Abstract
Author(s): Hanwell, MD; Harris, C; Genova, A; Haghighatlari, M; El Khatib, M; Avery, P; Hachmann, J; de Jong, WA | Abstract: Quantum chemistry must evolve if it wants to fully leverage the benefits of the internet age, where the worldwide web offers a vast tapestry of tools that enable users to communicate and interact with complex data at the speed and convenience of a button press. The Open Chemistry project has developed an open-source framework that offers an end-to-end solution for producing, sharing, and visualizing quantum chemical data interactively on the web using an array of modern tools and approaches. These tools build on some of the best open-source community projects such as Jupyter for interactive online notebooks, coupled with 3D accelerated visualization, state-of-the-art computational chemistry codes including NWChem and Psi4, and emerging machine learning and data mining tools such as ChemML and ANI. They offer flexible formats to import and export data, along with approaches to compare computational and experimental data.
- Published
- 2020
46. Response to the reviewers of 'Open Chemistry, JupyterLab, REST, and Quantum Chemistry'
- Author
-
Johannes Hachmann, Wibe A. de Jong, and Marcus D. Hanwell
- Subjects
Rest (physics) ,Library science ,Chemistry (relationship) ,Quantum chemistry - Abstract
The following provides excerpts from the reviews of the manuscript along with responses to them from the authors of the paper (italicized).Referee #1 (Report openly available here after publication of the article)Detailed Report
- Published
- 2020
47. Chemistry on quantum computers with virtual quantum subspace expansion
- Author
-
Miroslav Urbanek, Roel Van Beeumen, Wibe A. de Jong, and Daan Camps
- Subjects
Chemical Physics (physics.chem-ph) ,Quantum Physics ,Chemical Physics ,010304 chemical physics ,physics.chem-ph ,Stability (learning theory) ,FOS: Physical sciences ,01 natural sciences ,Quantum chemistry ,Computer Science Applications ,Computer Software ,quant-ph ,Simple (abstract algebra) ,Theoretical and Computational Chemistry ,Physics - Chemical Physics ,Qubit ,0103 physical sciences ,Statistical physics ,Biochemistry and Cell Biology ,Physical and Theoretical Chemistry ,Quantum Physics (quant-ph) ,Quantum ,Subspace topology ,Eigendecomposition of a matrix ,Quantum computer - Abstract
Author(s): Urbanek, Miroslav; Camps, Daan; Van Beeumen, Roel; Jong, Wibe A de | Abstract: Several novel methods for performing calculations relevant to quantum chemistry on quantum computers have been proposed but not yet explored experimentally. Virtual quantum subspace expansion [T. Takeshita et al., Phys. Rev. X 10, 011004 (2020)] is one such algorithm developed for modeling complex molecules using their full orbital space and without the need for additional quantum resources. We implement this method on the IBM Q platform and calculate the potential energy curves of the hydrogen and lithium dimers using only two qubits and simple classical post-processing. A comparable level of accuracy would require twenty qubits with previous approaches. We also develop an approach to minimize the impact of experimental noise on the stability of a generalized eigenvalue problem that is a crucial component of the algorithm. Our results demonstrate that virtual quantum subspace expansion works well in practice.
- Published
- 2020
48. Open Chemistry, JupyterLab, REST, and Quantum Chemistry
- Author
-
Muammar El Khatib, Wibe A. de Jong, Alessandro Genova, Chris Harris, Johannes Hachmann, Mojtaba Haghighatlari, Patrick Avery, and Marcus D. Hanwell
- Subjects
World Wide Web ,Quantum chemical ,Complex data type ,Open source ,Computer science ,Button press ,business.industry ,Experimental data ,The Internet ,business ,Visualization - Abstract
Quantum chemistry must evolve if it wants to fully leverage the benefits of the internet age, where the world wide web offers a vast tapestry of tools that enable users to communicate and interact with complex data at the speed and convenience of a button press. The Open Chemistry project has developed an open source framework that offers an end-to-end solution for producing, sharing, and visualizing quantum chemical data interactively on the web using an array of modern tools and approaches. These tools build on some of the best open source community projects such as Jupyter for interactive online notebooks, coupled with 3D accelerated visualization, state-of-the-art computational chemistry codes including NWChem and Psi4 and emerging machine learning and data mining tools such as ChemML and ANI. They offer flexible formats to import and export data, along with approaches to compare computational and experimental data.
- Published
- 2020
49. Zero-noise extrapolation for quantum-gate error mitigation with identity insertions
- Author
-
Benjamin Philip Nachman, Wibe A. de Jong, Andre He, and Christian W. Bauer
- Subjects
Physics ,General Physics ,Polynomial ,Extrapolation ,01 natural sciences ,Mathematical Sciences ,Identity (music) ,010305 fluids & plasmas ,Term (time) ,Noise ,Computer Science::Hardware Architecture ,Quantum gate ,quant-ph ,Physical Sciences ,Chemical Sciences ,0103 physical sciences ,010306 general physics ,Quantum ,Algorithm ,Electronic circuit - Abstract
Quantum-gate errors are a significant challenge for achieving precision measurements on noisy intermediate-scale quantum (NISQ) computers. This paper focuses on zero-noise extrapolation (ZNE), a technique that can be implemented on existing hardware, studying it in detail and proposing modifications to existing approaches. In particular, we consider identity insertion methods for amplifying noise because they are hardware agnostic. We build a mathematical formalism for studying existing ZNE techniques and show how higher order polynomial extrapolations can be used to systematically reduce depolarizing errors. Furthermore, we introduce a method for amplifying noise that uses far fewer gates than traditional methods. This approach is compared with existing methods for simulated quantum circuits. Comparable or smaller errors are possible with fewer gates, which illustrates the potential for empowering an entirely new class of moderate-depth circuits on near term hardware.
- Published
- 2020
50. Engineered thermalization and cooling of quantum many-body systems
- Author
-
Jonathan E. Moussa, Wibe A. de Jong, Mekena Metcalf, and Mohan Sarovar
- Subjects
Physics ,Quantum Physics ,Statistical Mechanics (cond-mat.stat-mech) ,Computer simulation ,FOS: Physical sciences ,Quantum simulator ,Fixed point ,Thermalisation ,quant-ph ,Lattice (order) ,Master equation ,Dissipative system ,Statistical physics ,Quantum Physics (quant-ph) ,cond-mat.stat-mech ,Quantum ,Condensed Matter - Statistical Mechanics - Abstract
We develop a scheme for engineering genuine thermal states in analog quantum simulation platforms by coupling local degrees of freedom to driven, dissipative ancilla pseudospins. We demonstrate the scheme in a many-body quantum spin lattice simulation setting. A Born-Markov master equation describing the dynamics of the many-body system is developed, and we show that if the ancilla energies are periodically modulated, with a carefully chosen hierarchy of timescales, one can effectively thermalize the many-body system. Through analysis of the time-dependent dynamical generator, we determine the conditions under which the true thermal state is an approximate dynamical fixed point for general system Hamiltonians. Finally, we evaluate the thermalization protocol through numerical simulation and discuss prospects for implementation on current quantum simulation hardware., Comment: 8 pages + Appendix. Published version
- Published
- 2020
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