22 results on '"Wenying Tang"'
Search Results
2. Influence of Frictional Stress Models on Simulation Results of High-Pressure Dense-Phase Pneumatic Conveying in Horizontal Pipe
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Shengxian Ding, Haijun Zhou, Wenying Tang, Ruien Xiao, and Jiaqi Zhou
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high-pressure dense-phase pneumatic conveying ,horizontal pipe ,frictional stress model ,numerical simulation ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Based on the two-fluid model, a three-zone drag model was developed, and the kinetic theory of granular flows and the Schneiderbauer solids wall boundary model were modified to establish a new three-dimensional (3D) unsteady mathematical model for high-pressure dense-phase pneumatic conveying in horizontal pipe. With this mathematical model, the influence of the three frictional stress models, namely Dartevelle frictional stress model, Srivastava and Sundaresan frictional stress model, and the modified Berzi frictional stress model, on the simulation result was explored. The simulation results showed that the three frictional stress models accurately predicted the pressure drop and its variations with supplementary gas in the horizontal pipe, with relative errors ranging from −4.91% to +7.60%. Moreover, the predicted solids volume fraction distribution in the cross-section of the horizontal pipe using these frictional stress models exhibited good agreement with the electrical capacitance tomography (ECT) images. Notably, the influence of the three frictional stress models on the simulation results was predominantly observed in the transition region and deposited region. In the deposited region, stronger frictional stress resulting in lower solids volume fraction and a higher pressure drop in the horizontal pipe were observed. Among the three frictional stress models, the simulation results with the modified Berzi frictional stress model aligned better with the experimental data. Therefore, the modified Berzi frictional stress model is deemed more suitable for simulating high-pressure dense-phase pneumatic conveying in horizontal pipe.
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- 2024
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3. Corrigendum: Alterations of cerebral perfusion and functional connectivity in children with idiopathic generalized epilepsy
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Guiqin Chen, Jie Hu, Haifeng Ran, Lei Nie, Wenying Tang, Xuhong Li, Qinhui Li, Yulun He, Junwei Liu, Ganjun Song, Gaoqiang Xu, Heng Liu, and Tijiang Zhang
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idiopathic generalized epilepsy ,cerebral blood flow ,functional connectivity ,arterial spin labeling ,resting state fMRI ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Published
- 2022
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4. Alterations of Cerebral Perfusion and Functional Connectivity in Children With Idiopathic Generalized Epilepsy
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Guiqin Chen, Jie Hu, Haifeng Ran, Lei Nie, Wenying Tang, Xuhong Li, Qinhui Li, Yulun He, Junwei Liu, Ganjun Song, Gaoqiang Xu, Heng Liu, and Tijiang Zhang
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idiopathic generalized epilepsy ,cerebral blood flow ,functional connectivity ,arterial spin labeling ,resting state fMRI ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
BackgroundStudies have demonstrated that adults with idiopathic generalized epilepsy (IGE) have functional abnormalities; however, the neuropathological pathogenesis differs between adults and children. This study aimed to explore alterations in the cerebral blood flow (CBF) and functional connectivity (FC) to comprehensively elucidate the neuropathological mechanisms of IGE in children.MethodsWe obtained arterial spin labeling (ASL) and resting state functional magnetic resonance imaging data of 28 children with IGE and 35 matched controls. We used ASL to determine differential CBF regions in children with IGE. A seed-based whole-brain FC analysis was performed for regions with significant CBF changes. The mean CBF and FC of brain areas with significant group differences was extracted, then its correlation with clinical variables in IGE group was analyzed by using Pearson correlation analysis.ResultsCompared to controls, children with IGE had CBF abnormalities that were mainly observed in the right middle temporal gyrus, right middle occipital gyrus (MOG), right superior frontal gyrus (SFG), left inferior frontal gyrus (IFG), and triangular part of the left IFG (IFGtriang). We observed that the FC between the left IFGtriang and calcarine fissure (CAL) and that between the right MOG and bilateral CAL were decreased in children with IGE. The CBF in the right SFG was correlated with the age at IGE onset. FC in the left IFGtriang and left CAL was correlated with the IGE duration.ConclusionThis study found that CBF and FC were altered simultaneously in the left IFGtriang and right MOG of children with IGE. The combination of CBF and FC may provide additional information and insight regarding the pathophysiology of IGE from neuronal and vascular integration perspectives.
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- 2022
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5. Research Progress in Isolation and Enrichment of Fetal Cells from Maternal Blood
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Ying Tang, Qiaojin Tang, Haiyan Luo, Xuehui Zhang, Qiuyu Chen, Wenying Tang, Ting Wang, Lihua Yang, and Hongwu Liao
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Chemistry ,QD1-999 - Abstract
Prenatal diagnosis is an important means of early diagnosis of genetic diseases, which can effectively reduce the risk of birth defects. Free fetal cells, as a carrier of intact fetal genetic material, provide hope for the development of high-sensitivity and high-accuracy prenatal diagnosis technology. However, the number of fetal cells is small and it is difficult to apply clinically. In recent years, noninvasive prenatal diagnosis (NIPD) technology for fetal genetic material in maternal peripheral blood has developed rapidly, which makes it possible to diagnose genetic diseases by fetal cells in maternal peripheral blood. This article reviewed the current status of fetal cell separation and enrichment technology and its application in noninvasive prenatal diagnosis technology.
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- 2022
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6. Cadmium-Rich Plant Powder/PAN/PU Foams with Low Thermal Conductivity
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Wenying Tang, Jin Sun, Jie Tang, Zheng Chen, Yidong Shi, Ruifang Zhao, Yuanzhang Jiang, and Lin Tan
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cadmium-rich plant ,composite foams ,low thermal conductivity ,high cadmium immobilization rate ,Organic chemistry ,QD241-441 - Abstract
Treating and utilizing heavy metal enriched plants have become growing problems. In this work, a series of composite foams were made from the powder of Cadmium-rich plant, polyacrylonitrile (PAN) and polyurethane (PU). Test results indicated that the addition of plant powder can not only increase the specific surface area, but also improve the apparent density and thermal stability of the foams. Besides, compared with the foam without plant powder, the powder-added foams exhibited a decreasing trend for thermal conductivity, and the minimum was 0.048 w/(m·k), which indicated that the addition of plant powder can help to enhance the thermal insulation of composite foam. More importantly, the results of leaching experiment showed that the leaching rate of heavy metal cadmium in the composite foam with 50% plant powder content was as low as 0.14% after being immersed in the acidic (pH = 3) solution for 5 days, which implies that the foam materials are very safe. This study provides a new way to realize high value-added resource utilization of heavy metal-enriched plants.
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- 2022
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7. Combination of FACS and homologous recombination for the generation of stable and high-expression engineered cell lines.
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Lei Shi, Xuesi Chen, Wenying Tang, Zhenyi Li, Jin Liu, Feng Gao, and Jianli Sang
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Medicine ,Science - Abstract
Traditionally, cell line generation requires several months and involves screening of over several hundred cell clones for high productivity before dozens are selected as candidate cell lines. Here, we have designed a new strategy for the generation of stable and high-expression cell lines by combining homologous recombination (HR) and fluorescence-activated cell sorting (FACS). High expression was indicated by the expression of secreted green fluorescent protein (SEGFP). Parental cell lines with the highest expression of SEGFP were then selected by FACS and identified by stability analysis. Consequently, HR vectors were constructed using the cassette for SEGFP as the HR region. After transfecting the HR vector, the cells with negative SEGFP expression were enriched by FACS. The complete exchange between SEGFP and target gene (TNFR-Fc) cassettes was demonstrated by DNA analysis. Compared with the traditional method, by integrating the cassette containing the gene of interest into the pre-selected site, the highest producing cells secreted a more than 8-fold higher titer of target protein. Hence, this new strategy can be applied to isolated stable cell lines with desirable expression of any gene of interest. The stable cell lines can rapidly produce proteins for researching protein structure and function and are even applicable in drug discovery.
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- 2014
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8. Fast Probabilistic Consensus Protocol (FPC) under Different Network Topologies.
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Fu Chen, Huizhu Li, Zhiyuan Sui, Kun Liu, and Wenying Tang
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- 2022
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9. A New Attack Method for Malicious Nodes in Tangle Network.
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Fu Chen, Huoyu Jia, Kun Liu, Wenying Tang, Jianming Zhu, and Weiyu Guo
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- 2020
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10. A Study on MQTT Node Selection.
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Fu Chen, Yujia Huo, Kun Liu, Wenying Tang, Jianming Zhu, and Zhiyuan Sui
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- 2020
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11. Microheater Integrated Nanotube Array Gas Sensor for Parts-Per-Trillion Level Gas Detection and Single Sensor-Based Gas Discrimination
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Wenying Tang, Zhesi Chen, Zhilong Song, Chen Wang, Zhu’an Wan, Chak Lam Jonathan Chan, Zhuo Chen, Wenhao Ye, and Zhiyong Fan
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Heating ,Nanotubes, Carbon ,Limit of Detection ,General Engineering ,Humans ,General Physics and Astronomy ,General Materials Science ,Gases ,Electronic Nose - Abstract
Real-time monitoring of health threatening gases for chemical safety and human health protection requires detection and discrimination of trace gases with proper gas sensors. In many applications, costly, bulky, and power-hungry devices, normally employing optical gas sensors and electrochemical gas sensors, are used for this purpose. Using a single miniature low-power semiconductor gas sensor to achieve this goal is hardly possible, mostly due to its selectivity issue. Herein, we report a dual-mode microheater integrated nanotube array gas sensor (MINA sensor). The MINA sensor can detect hydrogen, acetone, toluene, and formaldehyde with the lowest measured limits of detection (LODs) as 40 parts-per-trillion (ppt) and the theoretical LODs of ∼7 ppt, under the continuous heating (CH) mode, owing to the nanotubular architecture with large sensing area and excellent surface catalytic activity. Intriguingly, unlike the conventional electronic noses that use arrays of gas sensors for gas discrimination, we discovered that when driven by the pulse heating (PH) mode, a single MINA sensor possesses discrimination capability of multiple gases through a transient feature extraction method. These above features of our MINA sensors make them highly attractive for distributed low-power sensor networks and battery-powered mobile sensing systems for chemical/environmental safety and healthcare applications.
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- 2022
12. Temperature-Modulated Selective Detection of Part-per-Trillion NOsub2/subUsing Platinum Nanocluster Sensitized 3D Metal Oxide Nanotube Arrays
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Zhilong Song, Wenying Tang, Zhesi Chen, Zhu'an Wan, Chak Lam Jonathan Chan, Chen Wang, Wenhao Ye, and Zhiyong Fan
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Biomaterials ,Nanotubes ,Nitrogen Dioxide ,Temperature ,General Materials Science ,Oxides ,General Chemistry ,Gases ,Biotechnology ,Platinum - Abstract
Semiconductor chemiresistive gas sensors play critical roles in a smart and sustainable city where a safe and healthy environment is the foundation. However, the poor limits of detection and selectivity are the two bottleneck issues limiting their broad applications. Herein, a unique sensor design with a 3D tin oxide (SnOsub2/sub) nanotube array as the sensing layer and platinum (Pt) nanocluster decoration as the catalytic layer, is demonstrated. The Pt/SnOsub2/subsensor significantly enhances the sensitivity and selectivity of NOsub2/subdetection by strengthening the adsorption energy and lowering the activation energy toward NOsub2/sub. It not only leads to ultrahigh sensitivity to NOsub2/subwith a record limit of detection of 107 parts per trillion, but also enables selective NOsub2/subsensing while suppressing the responses to interfering gases. Furthermore, a wireless sensor system integrated with sensors, a microcontroller, and a Bluetooth unit is developed for the practical indoor and on-road NOsub2/subdetection applications. The rational design of the sensors and their successful demonstration pave the way for future real-time gas monitoring in smart home and smart city applications.
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- 2022
13. Robust hollow Bowl-like α-Fe
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Qiaoling, Kang, Yezhi, Qin, Jiangwei, Shi, Boru, Xiong, Wenying, Tang, Feng, Gao, and Qingyi, Lu
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The design and synthesis of hollow-nanostructured transition metal oxide-based anodes is of great importance for long-term operation of lithium ion batteries (LIBs). Herein, a special hollow bowl-like α-Fe
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- 2022
14. Wireless Self-Powered High-Performance Integrated Nanostructured-Gas-Sensor Network for Future Smart Homes
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Mutian Li, Zhuo Chen, Wenying Tang, Wenhao Ye, Zhiyong Fan, Zhilong Song, Xiaolin Wen, Qingfeng Zhou, Chen Wang, Chen Zhesi, Zhu'an Wan, Xiaofang Pan, Swapnadeep Poddar, and Yuanjing Lin
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business.industry ,Computer science ,General Engineering ,Electrical engineering ,General Physics and Astronomy ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Home automation ,Smart city ,Pattern recognition (psychology) ,Wireless ,General Materials Science ,Sensitivity (control systems) ,0210 nano-technology ,business ,Wireless sensor network ,5G ,Leakage (electronics) - Abstract
The accelerated evolution of communication platforms including Internet of Things (IoT) and the fifth generation (5G) wireless communication network makes it possible to build intelligent gas sensor networks for real-time monitoring chemical safety and personal health. However, this application scenario requires a challenging combination of characteristics of gas sensors including small formfactor, low cost, ultralow power consumption, superior sensitivity, and high intelligence. Herein, self-powered integrated nanostructured-gas-sensor (SINGOR) systems and a wirelessly connected SINGOR network are demonstrated here. The room-temperature operated SINGOR system can be self-driven by indoor light with a Si solar cell, and it features ultrahigh sensitivity to H2, formaldehyde, toluene, and acetone with the record low limits of detection (LOD) of 10, 2, 1, and 1 ppb, respectively. Each SINGOR consisting of an array of nanostructured sensors has the capability of gas pattern recognition and classification. Furthermore, multiple SINGOR systems are wirelessly connected as a sensor network, which has successfully demonstrated flammable gas leakage detection and alarm function. They can also achieve gas leakage localization with satisfactory precision when deployed in one single room. These successes promote the development of using nanostructured-gas-sensor network for wide range applications including smart home/building and future smart city.
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- 2021
15. A Study on MQTT Node Selection
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Zhiyuan Sui, Jianming Zhu, Kun Liu, Yujia Huo, Fu Chen, and Wenying Tang
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MQTT ,Password ,business.industry ,Computer science ,Node (networking) ,010401 analytical chemistry ,020206 networking & telecommunications ,02 engineering and technology ,Encryption ,Login ,01 natural sciences ,0104 chemical sciences ,0202 electrical engineering, electronic engineering, information engineering ,The Internet ,business ,Communications protocol ,Message queue ,Computer network - Abstract
The Internet of Things (IOT) is an Internet-based network that covers everything. Message Queuing Telemetry Transport (MQTT) is one of the commonly used communication protocols for any platform in the Internet of Things. Whether it is from the perspective of overall security or device compatibility and resource consumption, the MQTT protocol has certain advantages and is the most competitive communication protocol in the current Internet of Things. However, the user password login form adopted by the MQTT protocol has a certain degree of security problems. IOTA is an encrypted currency, and the Tangle network it uses is a new distributed structure. Based on this situation, this article innovatively combines the Tangle network with the MQTT protocol, and proposes a new communication option for MQTT nodes. When a new node enters the network, start from the Broker with the help of a “walker”, by judging the connection and survival of the node, using the Markov Chain Monte Carlo (MCMC) random walk algorithm to complete the node selection, and finally realize MQTT Communication between nodes. This article puts forward the design idea of this scheme, and realizes the scheme through simulation experiment.
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- 2020
16. Topic Logistics Based on Node Resource Status
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Kun Liu, Fu Chen, Weiyu Guo, Jianming Zhu, Yujia Huo, and Wenying Tang
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MQTT ,Computer science ,business.industry ,Node (networking) ,Energy consumption ,law.invention ,Resource (project management) ,Transmission (telecommunications) ,Relay ,law ,The Internet ,business ,Computer network ,Data transmission - Abstract
The Internet of things (IoT) is an expansion and extension based on the Internet, from network interconnection to the interrelationship of things. Most of the Internet of Things are using the publish/subscribe model, which stipulates the one-to-many situation of nodes in the Internet of Things’ uses a publish/subscribe model to achieve communication, using Broker as a relay and topic as a designated transmission path to deliver information to subscribers. But when a large amount of data is being transmitted, there will be node congestion. This will not only reduce the efficiency of data transmission, but also increase and waste the energy consumption of the entire Internet of Things. Therefore, this paper proposes topic logistics based on node resource status, and designs a new network data transmission algorithm. Based on the value of node resource status, it realizes the selection of possible data communication paths. It is verified through experiments that this algorithm can realize node resources. The full utilization of, thereby reducing communication energy consumption and improving transmission efficiency.
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- 2020
17. Predicted Congestion Using a Density-based Fast Neural Network Algorithm in Global Routing
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Zhiming Xiao, Jingxuan Chen, Weibo Hu, Xiaosai Liu, Wenying Tang, Fuhai Zhang, Zhonghua Zhou, Yaotong Cheng, and Tong Zhang
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Router ,Interconnection ,Artificial neural network ,Computer science ,ComputerSystemsOrganization_COMPUTER-COMMUNICATIONNETWORKS ,010401 analytical chemistry ,Real-time computing ,02 engineering and technology ,Integrated circuit design ,01 natural sciences ,020202 computer hardware & architecture ,0104 chemical sciences ,Identification (information) ,Test case ,Feature (computer vision) ,Hardware_INTEGRATEDCIRCUITS ,0202 electrical engineering, electronic engineering, information engineering ,Routing (electronic design automation) - Abstract
As the feature size of devices decreases and the number of transistor interconnect exceeds billions, the runtime of global router becomes a problem in very large-scale integrated circuit design. The congestion prediction in the global routing, which can cost huge time, is one of the most important and challenging problems. In this paper, we propose a density and pins peaks-based fast neural network algorithm (NNA) to predict congestion map. In order to save runtime, traditional prediction methods are replaced by a machine learning method with local density and pins as features. Furthermore, to improve the performance of proposed method, the predictive identification method to specify order of the rip-up and reroute for congested regions is also proposed. Compared with state-of-the-art router, NTHU-Route 2.0, on ISPD08 benchmarks, our method greatly improves the speed of predicting routing congestion information by 1094% in test cases, and saves runtime of the global router.
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- 2019
18. Measurement of Phenotype and Absolute Number of Circulating Heparin-Binding Hemagglutinin, ESAT-6 and CFP-10, and Purified Protein Derivative Antigen-Specific CD4 T Cells Can Discriminate Active from Latent Tuberculosis Infection
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David M. Kemeny, Paul Edward Hutchinson, Yee T. Wang, Wenying Tang, Timothy Barkham, and Cynthia B.E. Chee
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Microbiology (medical) ,Adult ,CD4-Positive T-Lymphocytes ,Male ,Tuberculosis ,Clinical Biochemistry ,Immunology ,Tuberculin ,Mycobacterium tuberculosis ,Diagnosis, Differential ,Young Adult ,Antigen ,Bacterial Proteins ,Antigens, CD ,Diagnostic Laboratory Immunology ,Lectins ,Immunology and Allergy ,Medicine ,Humans ,Interferon gamma ,CD154 ,Aged ,Antigens, Bacterial ,Singapore ,CFP-10 ,Latent tuberculosis ,biology ,business.industry ,Middle Aged ,medicine.disease ,biology.organism_classification ,Flow Cytometry ,Virology ,ROC Curve ,ESAT-6 ,Cytokines ,Female ,business ,medicine.drug - Abstract
The tuberculin skin test (TST) and interferon gamma (IFN-γ) release assays (IGRAs) are used as adjunctive tests for the evaluation of suspected cases of active tuberculosis (TB). However, a positive test does not differentiate latent from active TB. We investigated whether flow cytometric measurement of novel combinations of intracellular cytokines and surface makers on CD4 T cells could differentiate between active and latent TB after stimulation withMycobacterium tuberculosis-specific proteins. Blood samples from 60 patients referred to the Singapore Tuberculosis Control Unit for evaluation for active TB or as TB contacts were stimulated with purified protein derivative (PPD), ESAT-6 and CFP-10, or heparin-binding hemagglutinin (HBHA). The CD4 T cell cytokine response (IFN-γ, interleukin-2 [IL-2], interleukin-17A [IL-17A], interleukin-22 [IL-22], granulocyte-macrophage colony-stimulating factor [GM-CSF], and tumor necrosis factor alpha [TNF-α]) and surface marker expression (CD27, CXCR3, and CD154) were then measured. We found that the proportion of PPD-specific CD4 T cells, defined as CD154+TNF-α+cells that were negative for CD27 and positive for GM-CSF, gave the strongest discrimination between subjects with latent and those with active TB (area under the receiver operator characteristic [ROC] curve of 0.9277;P< 0.0001). Also, the proportions and absolute numbers of HBHA-specific CD4 T cells were significantly higher in those with latent TB infection, particularly CD154+TNF-α+IFN-γ+IL-2+and CD154+TNF-α+CXCR3+. Finally, we found that the ratio of ESAT-6- and CFP-10-responding to HBHA-responding CD4 T cells was significantly different between the two study populations. In conclusion, we found novel markers ofM. tuberculosis-specific CD4 cells which differentiate between active and latent TB.
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- 2015
19. [Construction and expression analysis of micro-linear vector as a new general gene therapy vector]
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Hongsheng, Wang, Xiaoqing, Li, Yuwen, He, Bailu, Xie, Wenying, Tang, and Jun, Du
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Mice ,Genetic Vectors ,Green Fluorescent Proteins ,Animals ,Humans ,CpG Islands ,3T3 Cells ,Genetic Therapy ,Kidney ,Promoter Regions, Genetic ,Transfection - Abstract
The most difficult field in gene therapy is that vector system should offer both a means of successful transfection and a maximum of safety for the patient. Viral vectors and plasmid vectors are traditional vectors; they may cause unwanted immunological side effects resulting from the expression of nontherapeutic genes. Our aim is to develop a new general gene therapy vector which is suggested to be called as Micro-Linear Vector. The gene expression cassette is capped by our designed cap, including promoter, enhancer, objective gene, and RNA-stabilizing sequence, so it can defend the exnuclease in the eukaryotic cell, at the same time, DNA not encoding the objective gene is reduced to a minimum. The GFP gene is separated from the pEGFP-N3 plasmid, and acts as a reporter gene to construct the Micro-Linear Vector, then both the new vector and the plasmid are transfected to cells, the results are tested by fluorescence microscope and flow cytometry. The results show that the Micro-Linear Vector has a high effective of transfection and safety in 293, 3T3, CNE2 and B95-8 cell lines, at the same time it is less toxicity than the plasmid. We can get the rudiments of conclusion that Micro-Linear Vector has high effection of the transfection and more safety than tradition plasmid in eukaryotic cell.
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- 2008
20. Expression, purification, crystallization and preliminary X-ray diffraction analysis of human phosphoribosyl pyrophosphate synthetase 1 (PRS1)
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Maikun Teng, Xu Li, Liwen Niu, Wenying Tang, Xiaowu Li, Shuilong Tong, Zhiqiang Zhu, and Xiao Zhang
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Purine ,Pyrimidine ,Stereochemistry ,Metabolite ,Biophysics ,medicine.disease_cause ,Crystallography, X-Ray ,Biochemistry ,law.invention ,chemistry.chemical_compound ,Biosynthesis ,Structural Biology ,law ,Genetics ,medicine ,Ribose-Phosphate Pyrophosphokinase ,Humans ,Crystallization ,Escherichia coli ,Chemistry ,Phosphoribosyl pyrophosphate ,Brain ,Condensed Matter Physics ,Crystallography ,Crystallization Communications - Abstract
Phosphoribosyl pyrophosphate synthetase (PRS; EC 2.7.6.1) catalyzes the reaction of ribose-5-phosphate (R5P) with ATP to yield AMP and PRPP (5-phosphoribosyl-1-pyrophosphate), which is necessary for the de novo and salvage pathways of purine-, pyrimidine- and pyridine-nucleotide biosynthesis. PRPP is a metabolite that is required at all times in the cell and is thus central to life. In this study, human PRS1 was produced in Escherichia coli in soluble form and purified to homogeneity. Crystals in complex with Mg2+, inorganic phosphate (P(i)) and ATP were obtained by the hanging-drop vapour-diffusion method. Diffraction data were collected to 2.6 A resolution. The crystal belongs to space group R3, with unit-cell parameters a = b = 168.846, c = 61.857 angstroms, assuming two molecules in the asymmetric unit and a volume-to-weight ratio of 2.4 angstroms3 Da(-1), which was consistent with the result calculated from the self-rotation function.
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- 2006
21. Crystal structure of 3-hydroxyanthranilic acid 3,4-dioxygenase from Saccharomyces cerevisiae: A special subgroup of the type III extradiol dioxygenases
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Hui Rong, Liwen Niu, Deqiang Wang, Wenying Tang, Maikun Teng, Min Guo, Qun Liu, Quan Hao, Jun Fan, Honghua Ge, and Xiaowu Li
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Models, Molecular ,2-His-1-carboxylate facial triad ,Stereochemistry ,Protein Conformation ,Saccharomyces cerevisiae ,Molecular Sequence Data ,Sequence alignment ,Crystallography, X-Ray ,Biochemistry ,Catalysis ,Substrate Specificity ,Protein structure ,Dioxygenase ,Animals ,Humans ,3-Hydroxyanthranilate 3,4-Dioxygenase ,Amino Acid Sequence ,Binding site ,Kynurenine pathway ,Molecular Biology ,Peptide sequence ,Extradiol dioxygenase ,X-ray crystallography ,Cupin superfamily ,Binding Sites ,biology ,MAD ,Active site ,Articles ,biology.organism_classification ,3-hydroxyanthranilic acid 3,4-dioxygenase ,biology.protein ,Oxygenases ,NAD+ kinase ,Crystallization ,Dimerization ,Sequence Alignment - Abstract
3-Hydroxyanthranilic acid 3,4-dioxygenase (3HAO) is a non-heme ferrous extradiol dioxygenase in the kynurenine pathway from tryptophan. It catalyzes the conversion of 3-hydroxyanthranilate (HAA) to quinolinic acid (QUIN), an endogenous neurotoxin, via the activation of N-methyl-D-aspartate (NMDA) receptors and the precursor of NAD + biosynthesis. The crystal structure of 3HAO from S. cerevisiae at 2.4 Å resolution shows it to be a member of the functionally diverse cupin superfamily. The structure represents the first eukaryotic 3HAO to be resolved. The enzyme forms homodimers, with two nickel binding sites per molecule. One of the bound nickel atoms occupies the proposed ferrous-coordinated active site, which is located in a conserved double-strand b-helix domain. Examination of the structure reveals the participation of a series of residues in catalysis different from other extradiol dioxygenases. Together with two iron-binding residues (His49 and Glu55), Asp120, Asn51, Glu111, and Arg114 form a hydrogen-bonding network; this hydrogen-bond network is key to the catalysis of 3HAO. Residues Arg101, Gln59, and the substrate-binding hydrophobic pocket are crucial for substrate specificity. Structure comparison with 3HAO from Ralstonia metallidurans reveals similarities at the active site and suggests the same catalytic mechanism in prokaryotic and eukaryotic 3HAO. Based on sequence comparison, we suggest that bicupin of human 3HAO is the first example of evolution from a monocupin dimer to bicupin monomer in the diverse cupin superfamilies. Based on the model of the substrate HAA at the active site of Y3HAO, we propose a mechanism of catalysis for 3HAO. Copyright © 2006 The Protein Society., link_to_subscribed_fulltext
- Published
- 2006
22. Expression, purification, crystallization and preliminary X-ray diffraction analysis of human phosphoribosyl pyrophosphate synthetase 1 (PRS1).
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Wenying Tang, Xiaowu Li, Zhiqiang Zhu, Shuilong Tong, Xu Li, Xiao Zhang, Maikun Teng, and Liwen Niu
- Subjects
- *
PYROPHOSPHATES , *PYRIMIDINES , *PYRIDINE nucleotides , *ESCHERICHIA coli , *ADENOSINE triphosphate , *PURINES - Abstract
Phosphoribosyl pyrophosphate synthetase (PRS; EC 2.7.6.1) catalyzes the reaction of ribose-5-phosphate (R5P) with ATP to yield AMP and PRPP (5-phosphoribosyl-1-pyrophosphate), which is necessary for the de novo and salvage pathways of purine-, pyrimidine- and pyridine-nucleotide biosynthesis. PRPP is a metabolite that is required at all times in the cell and is thus central to life. In this study, human PRS1 was produced in Escherichia coli in soluble form and purified to homogeneity. Crystals in complex with Mg2+, inorganic phosphate (Pi) and ATP were obtained by the hanging-drop vapour-diffusion method. Diffraction data were collected to 2.6 Å resolution. The crystal belongs to space group R3, with unit-cell parameters a = b = 168.846, c = 61.857 Å, assuming two molecules in the asymmetric unit and a volume-to-weight ratio of 2.4 Å3 Da−1, which was consistent with the result calculated from the self-rotation function. [ABSTRACT FROM AUTHOR]
- Published
- 2006
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