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Chlorinated hydrocarbons (CHCs) are often used in industrial processes, and they have been found in groundwater with increasing frequency in recent years. Several typical CHCs, including trichloroethylene (TCE), 1,1,1-trichloroethane (TCA), carbon tetrachloride (CT), etc., have strong cytotoxicity and carcinogenicity, posing a serious threat to human health and ecological environment. Advanced persulfate (PS) oxidation technology based on nano zero-valent iron (nZVI) has become a research hotspot for CHCs degradation in recent years. However, nZVI is easily oxidized to form the surface passivation layer and prone to aggregation in practical application, which significantly reduces the activation efficiency of PS. In order to solve this problem, various nZVI modification solutions have been proposed. This review systematically summarizes four commonly used modification methods of nZVI, and the theoretical mechanisms of PS activated by primitive and modified nZVI. Besides, the influencing factors in the engineering application process are discussed. In addition, the controversial views on which of the two (SO4·- and ·OH) is dominant in the nZVI/PS system are summarized. Generally, SO4·- predominates in acidic conditions while ·OH prefers neutral and alkaline environments. Finally, challenges and prospects for practical application of CHCs removal by nZVI-based materials activating PS are also analyzed.

Anastomosing hemangioma (AH) is a rare, benign vascular neoplasm with distinctive histopathology and characteristic tumor distribution. AHs show marked proclivity to involve the kidneys, gonads and the retroperitoneal soft tissues; kidney is the most common target site often in the context of end stage renal disease. Recent studies have identified activating mutations of GNA genes that drive the molecular pathogenesis of AHs. AH appears as a solitary, well-circumscribed, hypervascular tumor that charters a benign course with an excellent prognosis. The purpose of this article is to provide a current update on clinical, pathological and imaging features of anastomotic hemangioma.

Risk stratification of gastrointestinal stromal tumors (GISTs) is based on experience with tumors of the stomach, small bowel, and rectum, which are far more common than GISTs of other sites. In this study from 47 institutions, we analyzed GISTs of the esophagus (n = 102), colon (n = 136), and appendix (n = 27) for their size, mitotic rate, morphology, and outcome to determine which criteria predict their behavior. Esophageal GISTs were small (median: 2.5 cm) with spindle cell morphology and a low mitotic rate (mean: 3.6/5 mm2). Twelve (12%) tumors progressed, including 11 with a mitotic rate >5/5 mm2 and one large (6.8 cm) GIST with a mitotic rate of 2/5 mm2. Colonic GISTs were smaller (median: 1.4 cm) and presented with abdominal pain or bleeding in 29% of cases. Most (92%) were composed of spindle cells with a mean mitotic rate of 4.6/5 mm2. Sixteen (12%) tumors progressed: 14 had mitotic rates >5/5 mm2, and two were >5.0 cm with a mitotic rate 5/5 mm2) and size >5.0 cm. These findings support the use of size and mitotic rate for prognostication of GISTs in these locations, similar to tumors of the stomach, small bowel, and rectum.

Background The prognostic significance of histology in ileal pouch-anal anastomosis (IPAA) remains unclear. The aim of this study was to evaluate if histologic variables are predictive of IPAA clinical outcomes and healthcare utilization. Methods This was a retrospective cohort study of patients with IPAA undergoing surveillance pouchoscopy at a tertiary care institution. Pouch body biopsies were reviewed by gastrointestinal pathologists, who were blinded to clinical outcomes, for histologic features of acute or chronic inflammation. Charts were reviewed for clinical outcomes including development of acute pouchitis, chronic pouchitis, biologic or small molecule initiation, hospitalizations, and surgery. Predictors of outcomes were analyzed using univariable and multivariable logistic and Cox regression. Results A total of 167 patients undergoing surveillance pouchoscopy were included. Polymorphonuclear leukocytes (odds ratio [OR], 1.67), ulceration and erosion (OR, 2.44), chronic inflammation (OR, 1.97), and crypt distortion (OR, 1.89) were associated with future biologic or small molecule initiation for chronic pouchitis. Loss of goblet cells was associated with development of chronic pouchitis (OR, 4.65). Pyloric gland metaplasia was associated with hospitalizations (OR, 5.24). No histologic variables were predictive of development of acute pouchitis or surgery. In an exploratory subgroup analysis of new IPAA ( Conclusions Histologic findings may be predictive of IPAA outcomes. Pathologists should incorporate key histologic variables into pouchoscopy pathology reports. Clinicians may need to more closely monitor IPAA patients with significant histologic findings.

Context.— Cytomegalovirus (CMV) immunohistochemistry (IHC) is the most widely used method to diagnose CMV infection/reactivation in tissues in a pathology laboratory. Objective.— To improve the efficiency of CMV IHC testing by evaluating immunopositive staining trends of tissue-invasive CMV in the gastrointestinal system. Design.— A total of 1479 individual orders for CMV IHC on gastrointestinal biopsy specimens from 2016 to 2018 were included. The analysis was performed to identify the significant factors contributory to CMV-positive test results. Results.— The overall positivity rate of CMV IHC in our institution was 4.73% (70 of 1479). The positivity rate from physician-requested and pathologist-initiated tests was significantly different (7.54% versus 3.83%, P = .004). Cases with severe inflammation showed a higher positive CMV rate than those with mild inflammation (5.37% versus 2.60%, P = .04). Cytomegalovirus positivity in biopsies from posttransplant patients, inflammatory bowel disease, human immunodeficiency virus (HIV)/common variable immunodeficiency (CVID), cancer, and others was 19.69%, 3.84%, 23.33%, 9.00%, and 2.84%, respectively. The positivity rate among posttransplant, HIV/CVID, or cancer patients was significantly higher than in other populations. Cases tested with multiple tissue blocks generated a higher positivity rate than those with a single block (7.77% versus 3.23%, P < .001). Testing 3 to 4 blocks per case almost tripled the positive CMV detection rate (9.04%). Interestingly, using 5 or more blocks did not further ameliorate the positive CMV detection rate. Conclusions.— The data revealed that physician request, immunosuppression, multiple blocks, and severe inflammation were strongly related to positive CMV IHC detection rate. These findings might provide value in helping pathologists manage CMV IHC testing more efficiently.

Gastrointestinal (GI) symptoms of SARS-CoV-2/COVID-19 in the form of anorexia, nausea, vomiting, abdominal pain and diarrhea are usually preceded by respiratory manifestations and are associated with a poor prognosis. Hematochezia is an uncommon clinical presentation of COVID-19, and we hypothesize that older patients with significant comorbidities (obesity and cardiovascular) and prolonged hospitalization are susceptible to ischemic injury to the bowel. We reviewed the clinical course, key laboratory data including acute-phase reactants, and drug/medication history in 2 elderly male patients admitted for COVID-19 respiratory failure. Both patients had a complicated clinical course and suffered from hematochezia, acute blood loss, and anemia which led to hemodynamic instability requiring blood transfusion around day 40 of their hospitalization. Colonoscopic impressions were correlated with the histopathological findings in the colonic biopsies that included changes compatible with ischemia and nonspecific acute inflammation, edema, and increased eosinophils in the lamina propria. Both patients were hemodynamically stable, on prophylactic anticoagulants, multiple antibiotics, and antifungal agents due to respiratory infections at the time of lower GI bleeding. Hematochezia resolved spontaneously with supportive care. Both patients eventually recovered and were discharged. Elderly patients with significant comorbid conditions are uniquely at risk for ischemic injury to the bowel. This case report highlights hematochezia as an uncommon GI manifestation of spectrum of COVID-19 complications. The causes of bleeding in these COVID-19 associated cases are likely multifactorial and can be attributed to concomitant etiologies based on their age, multiple comorbid conditions, prolonged hospitalization compounded by lung injury, and hypoxia precipitated by the virus. We hypothesize that rather than a direct viral cytopathic effect, ischemia and hypoperfusion may be unleashed due to the cytokine storm orchestrated by the virus that leads to abnormal coagulation profile. Additional factors that may contribute to ischemic injury are prophylactic use of anticoagulants and polypharmacy. There were no other causes to explain the brisk lower GI bleeding. Presentation of hematochezia was followed by hemodynamic instability that may further increase the mortality and morbidity of COVID-19 patients, and prompt consultation and management by gastroenterology is therefore warranted.

Although coronavirus disease 2019 (COVID-19) is transmitted via respiratory droplets, there are multiple gastrointestinal and hepatic manifestations of the disease, including abnormal liver-associated enzymes. However, there are not many published articles on the pathological findings in the liver of patients with COVID-19. We collected the clinical data from 17 autopsy cases of patients with COVID-19 including age, sex, Body mass index (BMI), liver function test (alanine aminotransaminase (ALT), aspartate aminotransaminase (AST), alkaline phosphatase (ALP), direct bilirubin, and total bilirubin), D-dimer, and anticoagulation treatment. We examined histopathologic findings in postmortem hepatic tissue, immunohistochemical (IHC) staining with antibody against COVID-19 spike protein, CD68 and CD61, and electron microscopy. We counted the number of megakaryocytes in liver sections from these COVID-19-positive cases. Abnormal liver-associated enzymes were observed in 12 of 17 cases of COVID-19 infection. With the exception of three cases that had not been tested for D-dimer, all 14 patients' D-dimer levels were increased, including the cases that received varied doses of anticoagulation treatment. Microscopically, the major findings were widespread platelet-fibrin microthrombi, steatosis, histiocytic hyperplasia in the portal tract, mild lobular inflammation, ischemic-type hepatic necrosis, and zone 3 hemorrhage. Rare megakaryocytes were found in sinusoids. COVID-19 IHC demonstrates positive staining of the histiocytes in the portal tract. Under electron microscopy, histiocyte proliferation is present in the portal tract containing lipid droplets, lysosomes, dilated ribosomal endoplasmic reticulum, microvesicular bodies, and coronavirus. The characteristic findings in the liver of patients with COVID-19 include numerous amounts of platelet-fibrin microthrombi, as well as various degrees of steatosis and histiocytic hyperplasia in the portal tract. Possible mechanisms are also discussed.

Additional file 1: Figure S1. Correlation between CD47 expression and CD163+ macrophage counts.

Human zinc (Zn) and iron (Fe) deficiencies can partly be alleviated by enhancing cereal concentrations of these micronutrients. Soil nitrogen (N) levels codetermine cereal grain yields and Zn and Fe nutrition of plants and grains. Grain Zn and Fe concentrations have been reported to be affected by both yield dilution and enhanced acquisition and grain allocation of Zn and Fe. A global meta-analysis of 100 publications concerning wheat, maize, and rice providing 785 records of Zn and 506 records of Fe allowed us to assess their relative importance and quantify the concentrations and bioavailability of Zn and Fe in major cereal grains over a wide range of N fertilization levels. Compared with the no N controls, N application significantly increased grain Zn and Fe concentrations in all crops except maize Zn. The increase in grain protein concentration correlated positively with the increases in Zn and Fe concentrations in all cereals except Zn in maize. In rice, the grain Zn and Fe concentration increase was independent of the rate of N applied. Grain concentrations of Zn and Fe in wheat and Fe in maize were positively correlated with N rate but were only higher than those in the controls above 40–60 kg N ha−1. At lower N rates, the dilution effect was thus stronger than the enhancement effect. N supply had a larger effect on Zn and Fe concentrations in loamy textured soils or at lower soil available N and phosphorus (P), or higher soil organic matter and available Zn contents or with P and Zn fertilization, but the effect sizes differed among crops. Reductions in phytic acid concentration after N fertilization occurred in wheat, potentially improving micronutrient bioavailability. Thus, our findings indicate that N fertilization could be managed in ways that simultaneously support high grain yields and enhance nutritional quality for major cereals.

Ultrafiltration membrane fouling in chemical process especially for protein adhesion and bacterial attachment has become the biggest obstacle for its development. Mussel-inspired polydopamine (PDA) modification obtained more and more research to solve the above problem because of easily fabricating multifunctional coatings with various materials. Herein, a novel mussel-inspired anti-protein fouling membrane was prepared via co-deposition of PDA and polyethylene glycol (PEG), and Cu NPs was fixed by CuSO 4 /H 2 O 2 rapid deposition to improve its antibacterial performance. The surface elementary composition and morphologies of modified membranes were characterized by X-ray photoelectron spectroscopy (XPS) and field emission scanning electron microscopy (FE-SEM). The modified PVDF membranes were confirmed to have excellent hydrophilicity, enhanced coating stability, good anti-protein adhesion properties (both dynamic and static anti-protein adsorption). And the anti-antibacterial performance was increased with the incorporation of copper nanoparticles. This work provides a useful method for surface modification of PVDF membranes and suggests a time-saving fabrication of bio-inspired coatings for anti-fouling ultrafiltration membranes in wastewater treatment field.

Although it is generally accepted that eukaryotic gene order is not random, the basic principles of gene arrangement on a chromosome remain poorly understood. Here, we extended existing population genetics theories that were based on two-locus models and proposed a hypothesis that genetic interaction networks drive the evolution of eukaryotic gene order. We predicted that genes with positive epistasis would move toward each other in evolution, during which a negative correlation between epistasis and gene distance formed. We tested and confirmed our prediction with computational simulations and empirical data analyses. Importantly, we demonstrated that gene order in the budding yeast could be successfully predicted from the genetic interaction network. Taken together, our study reveals the role of the genetic interaction network in the evolution of gene order, extends our understanding of the encoding principles in genomes, and potentially offers new strategies to improve synthetic biology.

Codon usage bias (CUB) refers to the observation that synonymous codons are not used equally frequently in a genome. CUB is stronger in more highly expressed genes, a phenomenon commonly explained by stronger natural selection on translational accuracy and/or efficiency among these genes. Nevertheless, this phenomenon could also occur if CUB regulates gene expression at the mRNA level, a hypothesis that has not been tested until recently. Here, we attempt to quantify the impact of synonymous mutations on mRNA level in yeast using 3,556 synonymous variants of a heterologous gene encoding green fluorescent protein (GFP) and 523 synonymous variants of an endogenous gene TDH3. We found that mRNA level was positively correlated with CUB among these synonymous variants, demonstrating a direct role of CUB in regulating transcript concentration, likely via regulating mRNA degradation rate, as our additional experiments suggested. More importantly, we quantified the effects of individual synonymous mutations on mRNA level and found them dependent on 1) CUB and 2) mRNA secondary structure, both in proximal sequence contexts. Our study reveals the pleiotropic effects of synonymous codon usage and provides an additional explanation for the well-known correlation between CUB and gene expression level.

Familial adenomatous polyposis (FAP) is an autosomal dominant syndrome associated with mutation in the adenomatous polyposis coli (APC) gene, a tumour suppressor located on chromosome 5q21. Attenuated familial adenomatous polyposis (AFAP) is a variant associated with fewer and later onset of colon polyps. AFAP-associated APC mutations have largely been found before codon 157, in exon 9 or after codon 1595. We present the case of a 44-year-old man incidentally found to have numerous gastric polyps during bariatric surgery, with innumerable polyps in the remaining part of the stomach and the entire colon, with rectal sparing, consistent with AFAP phenotype. Genetic testing demonstrated the c.7682dup (p.Ser2562Lysfs*21) variant in exon 15 of APC. This represents a previously undescribed APC mutation. This mutation likely yields end-binding protein 1 and human disc large binding protein inactivation, causing cell cycle microtubule dysregulation and tumour suppressor inactivation. Through loss of these regulatory mechanisms, this mutation is associated with AFAP phenotype. The patient was treated surgically and is doing well.

ObjectivesTo investigate the diagnostic potential of AEG-1 and GPC-3 in hepatocellular carcinoma (HCC).MethodsAEG-1 and GPC-3 immunohistochemistry were performed on HCC, adjacent nontumor tissue (ANT), and dysplastic nodules (DN).ResultsH score of AEG-1 or GPC-3 in HCC was significantly higher than in ANT or DN. In HCC, 92% and 54% showed AEG-1 and GPC-3 positivity, respectively. In ANT, 16.2% were AEG-1 and 7.6% GPC-3 positive. AEG-1 staining was mostly diffuse, whereas GPC-3 frequently showed focal staining. AEG-1 alone showed high sensitivity but low specificity and accuracy. GPC-3, on the other hand, showed high specificity but low sensitivity and accuracy. Combination of both stains boosted the sensitivity, specificity, and accuracy to 94.6%, 89.5%, and 90.5%, respectively, when only diffuse staining was considered as positive.ConclusionsAEG-1 or GPC-3 alone seemed not an ideal marker for HCC. The combination of AEG-1 and GPC-3 might improve early diagnosis of HCC.

Background & Aims Collagenous colitis (CC) is an inflammatory bowel disorder with unknown etiopathogenesis involving HLA-related immune-mediated responses and environmental and genetic risk factors. We carried out an array-based genetic association study in a cohort of patients with CC and investigated the common genetic basis between CC and Crohn's disease (CD), ulcerative colitis (UC), and celiac disease. Methods DNA from 804 CC formalin-fixed, paraffin-embedded tissue samples was genotyped with Illumina Immunochip. Matching genotype data on control samples and CD, UC, and celiac disease cases were provided by the respective consortia. A discovery association study followed by meta-analysis with an independent cohort, polygenic risk score calculation, and cross-phenotype analyses were performed. Enrichment of regulatory expression quantitative trait loci among the CC variants was assessed in hemopoietic and intestinal cells. Results Three HLA alleles (HLA-B∗08:01, HLA-DRB1∗03:01, and HLA-DQB1∗02:01), related to the ancestral haplotype 8.1, were significantly associated with increased CC risk. We also identified an independent protective effect of HLA-DRB1∗04:01 on CC risk. Polygenic risk score quantifying the risk across multiple susceptibility loci was strongly associated with CC risk. An enrichment of expression quantitative trait loci was detected among the CC-susceptibility variants in various cell types. The cross-phenotype analysis identified a complex pattern of polygenic pleiotropy between CC and other immune-mediated diseases. Conclusions In this largest genetic study of CC to date with histologically confirmed diagnosis, we strongly implicated the HLA locus and proposed potential non-HLA mechanisms in disease pathogenesis. We also detected a shared genetic risk between CC, celiac disease, CD, and UC, which supports clinical observations of comorbidity.

Embedding nanomaterials in thin film composite membranes to overcome the dynamic balance between salt rejection and permeability has become a research hotspot. Apparently, the filling positions of nanomaterials in membranes have a significant influence on membrane properties. In this work, GO@CS core-shell nanomaterials was firstly successfully synthesized, with good hydrophilicity and fast water transmission channels. Then the influences of addition amounts and loading positions of GO@CS on membrane performance were explored. Results demonstrated that embedding GO@CS with 0.01 wt% in the polyamide layer could give full play to the advantages of core-shell nanomaterials and improve the water flux and salt rejection (water flux increased by 115%, salt rejection increased to 99.10%), as well as the performance stability. Compared with TFN membrane with GO@CS embedded between the polyamide layer and supporting layer, the TFN membrane with GO@CS embedded in the polyamide layer could make full use of advantages provided by GO@CS that fast water transmission channels and the interlayer spacing assisting in salt rejection. This work provided guidances for the effect of nanomaterials with hierarchical pores embedding position on membrane performance.

Solitary fibrous tumor is a rare, benign spindle cell neoplasm that was first described in the thoracic pleura. This tumor is now known to occur at many extrapleural sites. There are established criteria for the diagnosis of malignant solitary fibrous tumor including ≥4 mitotic figures per 10 high-power fields, increased cellularity, cytologic atypia, infiltrative margins, and/or necrosis. Although all solitary fibrous tumors have the potential to recur or metastasize, those with malignant histologic features tend to behave more aggressively. We report a case of solitary fibrous tumor, with malignant histologic features, in a 21-year-old woman which arose from the serosal surface of the sigmoid colon.

A method was developed for the determination of biomarkers related to toxicity of deltamethrin in rabbit urine by high performance liquid chromatography-tandem mass spectrometry (HPLC-MS/MS). The target analytes in this method are as follows:deltamethrin and its two metabolites (1

Histoplasmosis is a self-limited and asymptomatic disease in immunocompetent individuals. Patients with untreated human immunodeficiency virus (HIV) or immune suppression due to medications such as corticosteroids can present with disseminated and life-threatening infections. We present a case of a 60-year-old female that presented with recurrent diarrhea that was found to have isolated gastrointestinal (GI) histoplasmosis. The rarity of this case is due to the isolated colonic involvement and lack of respiratory symptoms (the portal of infection). In conclusion, clinicians should be aware of isolated histoplasmosis affecting the GI tract and careful endoscopic evaluation with adequate sampling is warranted to confirm the diagnosis.

Objectives The precise measurement of fat accumulation in the liver, or steatosis, is an important clinical goal. Our previous studies in phantoms and mouse livers support the hypothesis that, starting with a normal liver, increasing accumulations of microsteatosis and macrosteatosis will increase the lossy viscoelastic properties of shear waves in a medium. This increase results in an increased dispersion (or slope) of the shear wave speed in the steatotic livers. Methods In this study, we moved to a larger animal model, lean versus obese rat livers ex vivo, and a higher-frequency imaging system to estimate the shear wave speed from crawling waves. Results The results showed elevated dispersion in the obese rats and a separation of the lean versus obese liver parameters in a 2-dimensional parameter space of the dispersion (slope) and shear wave speed at a reference frequency of 150 Hz. Conclusions We have confirmed in 3 separate studies the validity of our dispersion hypothesis in animal models.

Background The current American Joint Committee on Cancer Seventh Edition (AJCC7) pathologic staging for esophageal adenocarcinoma (EAC) is derived from data assessing the outcomes of patients having undergone esophagectomy without neoadjuvant treatment and has unclear significance in patients who have received multimodality therapy. Lymph nodes with evidence of neoadjuvant treatment effect without residual cancer cells may be observed and are not traditionally considered in pathologic reports, but may have prognostic significance. Methods All patients who underwent esophagectomy after completing neoadjuvant therapy for EAC at our institution between 2006 and 2012 were reviewed. Slides of pathologic specimens were reexamined for locoregional treatment-response nodes lacking viable cancer cells but with evidence of acellular mucin pools, central fibrosis, necrosis, or calcifications suggesting prior tumor involvement. Kaplan-Meier survival functions were estimated, and Cox proportional hazards regression models were used to compare staging models. Results Ninety patients (82 men) underwent esophagectomy after neoadjuvant therapy for EAC (mean age, 61.8 ± 8.9 years). All patients received preoperative chemotherapy, and 50 patients also underwent preoperative radiotherapy. Median Kaplan-Meier survival was 55.6 months, and 5-year survival was 35% (95% confidence interval, 19% to 62%). A total of 100 treatment-response nodes were found in 38 patients. For patients with limited nodal disease (62 ypN0-N1), the presence of treatment-response nodes was associated with significantly worse survival ( p = 0.03) compared with patients lacking such nodes. Adjusting for patient age and AJCC7 pathologic stage showed the presence of treatment-response nodes significantly increased the risk of death (hazard ratio, 2.7; 95% confidence interval, 1.1 to 6.9; p = 0.04). When stage-adjusted survival was modeled, counting treatment-response nodes as positive nodes offered a better model fit than ignoring them. Conclusions Treatment-response lymph nodes detected from esophagectomy specimens in patients having undergone neoadjuvant chemotherapy or combined chemoradiation for EAC provide valuable prognostic information, particularly in patients with limited nodal disease. The current practice of considering lymph nodes lacking viable cancer cells, but with evidence of tumor necrosis, as pathologically negative likely results in understaging. Future efforts at revising the staging system for EAC should consider incorporating treatment-response lymph nodes in the analysis.

A 69 year-old male with a past medical history of hypertension, diabetes, and atrial fibrillation presented to the Urology clinic with asymptomatic microscopic hematuria. His work up for hematuria included a negative cystoscopy and a computed tomography (CT) scan, which revealed what appeared to be a fluid collection around the left kidney with a perinephric infiltrative mass and two para-aortic enlarged lymph nodes.

In this study, the spatial distribution and seasonal variation of large tintinnids (>76 μm) were investigated in Shenhu Bay during three seasons of 2012. Of the 36 species identified, 9 were dominant (i.e. Tintinnopsis radix, Leprotintinnus simplex, Tintinnopsis japonica, Tintinnopsis tubulosoides, Leprotintinnus nordqvisti, Tintinnopsis beroidea, Stenosemella parvicollis, Tintinnidium primitivum, Tintinnopsis nana). A clear seasonal shift of the taxonomic composition as well as the lorica size of the dominant species was observed. The highest numbers of tintinnid species occurred in spring, while the highest abundance and biomass occurred in summer. Clustering indicated that the seasonal variations of the community structure were more obvious than spatial variations. Spearman correlation analysis revealed that density of phytoplankton prey had a significant impact on the tintinnid abundance. Redundancy analysis (RDA) illustrated that temperature, salinity and the nutrient level were the most important abiotic factors affecting the spatial and seasonal pattern of tintinnid communities in Shenhu Bay.

The near-cosmopolitan genusClytiais abundantly found in coastal waters, but difficulties of identification in this genus make nearly all species records of medusae suspect. Complex life histories, ambiguous taxonomic characters, and phenotypic plasticity pose serious problems for accurate species-level identifications and future revisions ofClytiaspecies. In the present study, morphological investigations and molecular analyses ofClytiaspecimens from the coastal waters of the East China Sea revealedClytia gulangensissp. nov. as a new species. DNA barcoding based on the mitochondrial cytochrome oxidase I (COI) gene supported the new species as a separate species withinClytia, and phylogenetic analyses based on mitochondrial 16S rDNA and nuclear 18S rDNA further confirmed this new species to be a distinct lineage. Moreover, detailed observation of medusae and polyps of this species showed sufficient morphological differences from otherClytiaspecies for a diagnosis. Our results indicated that life cycle and DNA-based studies should be a standard approach in future biodiversity investigations ofClytiaspecies.

Identification of hydrozoan species is challenging, even for taxonomic experts, due to the scarcity of distinct morphological characters and phenotypic plasticity. DNA barcoding provides an efficient method for species identification, however, the choice between mitochondrial cytochrome c oxidase subunit I (COI) and large subunit ribosomal RNA gene (16S) as a standard barcode for hydrozoans is subject to debate. Herein, we directly compared the barcode potential of COI and 16S in hydrozoans using 339 sequences from 47 pelagic hydrozoan species. Analysis of Kimura 2-parameter genetic distances (K2P) documented the mean intraspecific/interspecific variation for COI and 16S to be 0.004/0.204 and 0.003/0.223, respectively. An obvious “barcoding gap” was detected for all species in both markers and all individuals of a species clustered together in both the COI and 16S trees. These results suggested that the species within the studied taxa can be efficiently and accurately identified by COI and 16S. Furthermore, our results confirmed that 16S was a better phylogenetic marker for hydrozoans at the genus level, and in some cases at the family level. Considering the resolution and effectiveness for barcoding and phylogenetic analyses of Hydrozoa, we strongly recommend 16S as the standard barcode for hydrozoans.

A direct current glow discharge microplasma source permits ambient ionization directly and can provide fast and accurate in situ detection combined with a spectrometer. In this study, a stable microplasma-based detector for nerve agent detection has been developed. The innovative concept of this new nerve agent detector is to detect two parts of the nerve agent components, the element phosphorus and the organic part, CH radicals, at the same time. Because there are two detection targets, our microplasma-based detector has enhanced selectivity for nerve agents. The reasons for this characteristic are studied through comparing the emission spectra of the microplasma and microwave plasma. We suggest that it's the very low gas temperature of our microplasma source that makes it possible to excite the nerve agent molecules without decomposition or splitting of the CH component. Thus the spectrometer can detect the emission lines of the element phosphorus and the organic CH radicals simultaneously. The influence of discharge current and gas flow rate on phosphorus signal intensity has been investigated. The emission intensity of phosphorus at 253.6 nm increases linearly with the discharge current in our tested range, but non-linearly with the gas flow rate. The detection curve has been calibrated. The emission intensity at 253.6 nm is in proportion to the concentration of the specimen triethyl phosphate (TEP) in the range from 41 ppm to 500 ppm by volume. The detection limit was calculated to be 5 ppm by volume. Small size, low power, low cost, and high selectivity make our device very suitable for nerve agent scanning in the field.

Surface water samples were collected from 19 sites in the northern Beibu Gulf in April 2011. Species composition and abundance of planktonic ciliates were investigated. They were combined with environmental data to obtain the spatial pattern of the ciliate community and its relationship with the environment. A total of 36 species belonging to 13 genera and 3 orders (Oligotrichida, Haptorida and Tintinnida) were identified, including 10 dominant species. All 19 samples were divided into three groups using cluster analysis and multidimensional scaling (MDS) on the basis of the ciliate species composition and abundance. Group 1 was the least abundant. The species of the order Oligotrichida dominated in Group 2. In contrast, Mesodinium species were of increased importance in Group 3. Redundancy analysis (RDA) revealed that ciliate communities were more closely related to the level of nitrogen (total nitrogen, nitrate nitrogen, nitrite nitrogen) and phosphorus (total phosphorus, active phosphorus) rather than other variables. As the levels of nitrogen and phosphorus increased, communities dominated by species from the order Oligotrichida were replaced by those dominated by Mesodinium species.

The genusClytiais distributed worldwide, but most accepted species in this genus have been examined either only at the hydroid or medusa stage. The challenge in identifyingClytiaspecies reflects their complex life cycles and phenotypic plasticity. In this study, molecular and morphological investigations ofClytiaspecimens from the coastal waters of China revealed an as yet unreported species, designatedC. xiamenensissp. nov., that was considered as conspecific to two nearly cosmopolitan species,C. hemisphaericaandC. gracilis. DNA barcoding based on partial mitochondrial cytochrome c oxidase subunit I (COI) and large subunit ribosomal RNA gene (16S) confirmed the highly distinct lineage ofC. xiamenensissp. nov. These results were corroborated by the detailed observations of its mature medusae and its colonies, which showed thatC. xiamenensissp. nov. was morphologically distinct from other species ofClytia. Thus, based on our findings, the nearly cosmopolitan distribution attributed to some species ofClytiamight rather be due to the misidentification, and it is necessary to elucidate their whole life cycle in order to establish the systematic validity of all species within the genusClytia.

Aims Biopsies from the ampulla of Vater and the common bile duct often pose diagnostic challenges. The aim of this study was to investigate the expression patterns of HMGA1, HMGA2, β-catenin and p53 in biopsy specimens, in order to evaluate the potential diagnostic value of these proteins in differentiating adenocarcinoma from reactive atypia or adenoma. Methods and results Forty-eight biopsies (10 from the common bile duct and 38 from the ampulla) were selected for immunohistochemical studies; they included 14 cases of reactive atypia, 12 adenomas, and 22 adenocarcinomas. Expression of HMGA1 was seen in 21% of the reactive atypia cases, 42% of adenomas, and 91% of adenocarcinomas. HMGA2 was positive in 14% of reactive atypias, 42% of adenomas, and 86% of adenocarcinomas. The staining intensity of HMGA1 and HMGA2 was also significantly higher in adenocarcinomas than in adenomas or reactive atypias. Interestingly, coexpression of HMGA1 and HMGA2 was found in 86% of adenocarcinomas, 0% of reactive atypias, and 8% of adenomas. p53 and β-catenin expression seemed not to provide additional value for discriminating adenocarcinoma from reactive atypia or adenoma. Conclusions HMGA1 and HMGA2 might serve to discriminate between reactive atypia, adenoma and adenocarcinoma in ampulla and common bile duct biopsies.

Bisphenol A (BPA) is a high production volume endocrine disrupting chemical that is widely used in many consumer products and prevalent in human biological fluids. Recent studies suggest that BPA is active even at low levels, raising concern about its potential harm to human health. Given that the main route of exposure to BPA is oral, via the consumption of BPA-tainted foods and beverages, intestinal tissues could be particularly vulnerable to BPA-induced changes. A novel examination is reported here of whether oral exposure to BPA affects inflammatory bowel disease (IBD), an immune-mediated disease of the colon, using a mouse model of inflammatory colitis. In addition to direct exposure, the possible contribution of maternal BPA exposure to disease later in life is explored. It was found that daily oral exposure to BPA at the US Environmental Protection Agency described oral reference dose (50 µg/kg/day), either via direct oral route or through maternal sources (i.e. developmental exposure), did not significantly alter disease outcomes of body weight, survival, or colonic pathology. These observations suggest that oral BPA exposure, at this dose and for this exposure duration, has minimal influence on aspects of the inflammatory response that regulate immune mediated diseases of the gastrointestinal tract.

A low power micro-plasma device was designed, constructed and evaluated for nonmetal detection, particularly for the direct measurement of phosphorus and sulfur. The device employed an open discharge chamber to generate an argon plasma discharge at atmospheric pressure of about 2 watts power and 150 nL volume for elemental excitation and molecular fragmentation. The emission light from the miroplasma source was collected and coupled to a palm-sized spectrometer through an optical fiber for spectral measurement. The characteristics of the low power micro-nano-plasma discharge, such as relationship of voltage–current, were studied to optimize discharge parameters. Two spectral lines of 253.6 nm and 469.4 nm were used for detection of phosphorus and sulfur, respectively. The stability of the low power micro-plasma device was quantitatively evaluated, and the analytical figures of merit for nonmetal detection were reported. The detection limits are 68 ppbv for phosphorus, and 1.0 ppmv for sulfur, respectively. The sensitivities of the device for nonmetal detection are comparable with those of conventional methods. However, our device provides significant advantages of small size, low power, low cost, and fieldable detection.

We used inter-simple sequence repeat fingerprinting to analyze the genetic structure of 16 populations of Stentor coeruleus from three lakes and three ponds in China. Using 14 polymorphic primers, a total of 99 discernible DNA fragments were detected, among which 76 (76.77%) were polymorphic, indicating median genetic diversity in these populations. Further, both Nei's gene diversity (h) and Shannon's information index (I) between the different populations revealed a median genetic diversity. At the same time, gene flow was interpreted to be low. The main factors responsible for the median level of diversity and low gene flow within populations are probably due to a low frequency of sexual recombinations. Analysis of molecular variance showed that there was high genetic differentiation among the five water bodies. Both cluster analysis and a nonmetric multidimensional scaling analysis suggested that genotypes isolated from the same locations displayed a higher genetic similarity than those from different ones, separating populations into subgroups according to their geographical locations. However, there is a weak positive correlation between the genetic distance and geographical distance.