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The magnetotelluric (MT) sounding of a layered Earth model involving a transitional layer has been widely studied, and MT responses of the model with dipping anisotropic conductivity have also been treated. However, a model incorporating both a transitional layer and dipping anisotropy has seldom been considered. The analytical solution of such a geoelectrical model including three layers was derived in this study. The middle layer was a transitional layer with conductivity exponentially varying with depth, which was covered by a homogeneous layer and underlaid by a dipping anisotropic half-space. The electromagnetic (EM) fields in the transitional layer were explicitly solved with modified Bessel functions. The surface impedance was calculated recursively. The dependence of the apparent resistivity and impedance phase as well as the EM fields on different model parameters were investigated in detail. We believe that our analytical solution provides a useful complement to the theory of the one-dimensional (1D) inversion and interpretation based on the layered model with fixed conductivity.

Scale insects are hemimetabolous, showing "incomplete" metamorphosis and no true pupal stage. Ericerus pela, commonly known as the white wax scale insect (hereafter, WWS), is a wax-producing insect found in Asia and Europe. WWS displays dramatic sexual dimorphism, with notably different metamorphic fates in males and females. Males develop into winged adults, while females are neotenic and maintain a nymph-like appearance, which are flightless and remain stationary. Here, we report the de novo assembly of the WWS genome with a size of 638.30 Mbp (69.68 Mbp for scaffold N50) by PacBio sequencing and Hi-C. These data allowed us to perform a robust phylogenetic analysis comprising 24,923 gene orthogroups from 16 representative insect genomes. This analysis indicated that holometabola evolved from insects with incomplete metamorphosis in the Late Carboniferous, about 50 million years earlier than previously thought. To study the distinct developmental fates of males and females, we analysed the methylome landscape in either sex. Surprisingly, WWS displayed high methylation levels (4.42% for males) when compared to other insects. We observed differential methylation patterns in males and females for genes involved in steroid and sesquiterpenoid production as well as genes acting in fatty acid metabolism pathways. We measured titre profiles for ecdysone, the principal insect steroid hormone, and juvenile hormone (a sesquiterpenoid) in both males and females, which suggested that these hormones are the primary drivers of sexually dimorphic development. Our results provide a comprehensive genomic and epigenomic resource of scale insects that provide new insights into the evolution of metamorphosis and sexual dimorphism in insects.

Background Small nucleolar RNA host gene (SNHG) family members are newly recognized lncRNAs, which have been revealed to be oncogenes in several cancers. However, little studies investigated the expression and clinical implications of SNHGs in AML. Methods Herein, we systemically determined the prognostic role of the expression of SNHG family members in acute myeloid leukemia (AML). Results Among the expression of all SNHG family members, we identified that only SNHG7 and SNHG12 expression were found to have prognostic effects on overall survival (OS) and leukemia-free survival (LFS) in AML by Cox regression univariate analysis. Furthermore, Kaplan-Meier analysis showed that SNHG7 higher-expressed cases had markedly longer OS and LFS time than SNHG7 lower-expressed cases, whereas SNHG12 higher-expressed cases had markedly shorter OS and LFS time than SNHG12 lower-expressed cases. Interestingly, SNHG7 and SNHG12 expression were also associated with several prognosis-related clinical/molecular features such as white blood cell counts, FAB/cytogenetic classifications, IDH1 mutation, RUNX1 mutation, and NPM1 mutation. Despite the associations, Cox regression multivariate analysis confirmed the independent prognostic impact of SNHG7 and SNHG12 expression in AML. Notably, we further validated that both SNHG7 and SNHG12 expression was significantly increased in newly diagnosed AML patients. Conclusion Our findings demonstrated that SNHG7 and SNHG12 expression act as independent prognostic indicators in AML.

The Rindler spacetime describing a series of accelerating observers is Ricci flat, but it still has novel optical effects. In the case of WKB approximation, we derive the light geodesics in the Rindler frame based on the covariant wave equation and geodesic equations. Then, we use ABCD matrix optics method to explore the propagation characteristics of Rindler frame, thus link three different optical transformation scenes (geometry, gravity and vacuum refractive index) together. Moreover, the propagation characteristics of hollow beam in Rindler spacetime are described analytically. Those characteristics are quite different from the ones in the flat spacetime. Based on these calculations, we simply demonstrate the position uncertain relationship between the transverse beam size and the momentum, which surprisingly coincides with the derivation of quantization. We hope that we can provide one simple method to analyze the beam propagation in the accelerated frame., 7 pages,4 figures

DNA condensed agents can improve the transfection efficiency of the cationic liposome delivery system. However, various condensed agents have distinct transfection efficiency and cellular cytotoxicity. The object of this study was to screen the optimal agents with the high transfection efficiency and low cytotoxicity from four polymer compressive materials, polyethylenimine (PEI), chitosan, poly-l-lysine (PLL), and spermidine. DNA was precompressed with these four agents and then combined to cationic liposomes. Subsequently, the entrapment and transfection efficiency of the obtained complexes were investigated. Finally, the particle sizes, cytotoxicity, and endocytosis fashion of these copolymers (Lipo-PEI, Lipo-chitosan, Lipo-PLL, and Lipo-spermidine) were examined. It was found that these four copolymers had significantly lower cytotoxicity and higher transfection efficiency (45.5%, 42.4%, 36.8%, and 47.4%, respectively) than those in the control groups. The transfection efficiency of Lipo-PEI and Lipo-spermidine copolymers were better than the other two copolymers. In 293T cells, nystatin significantly inhibited the transfection efficiency of Lipo-PEI-DNA and Lipo-spermidine-DNA (51.88% and 46.05%, respectively), which suggest that the endocytosis pathway of Lipo-spermidine and Lipo-PEI copolymers was probably caveolin dependent. Our study indicated that these dual-degradable copolymers especially liposome-spermidine copolymer could be used as the potential biocompatible gene delivery carriers.

Background Aberrant DNA methylation has been firmly established as a factor contributing to the pathogenesis of colorectal cancer (CRC) via its capacity to silence tumour suppressor genes. However, the methylation status of multiple tumour suppressor genes and their roles in promoting CRC metastasis are not well characterised. Methods We explored the methylation and expression profiles of CPEB1 (the gene encoding cytoplasmic polyadenylation element-binding protein 1), a candidate CRC tumour suppressor gene, using The Cancer Genome Atlas (TCGA) database and validated these results in both CRC cell lines and cells from Han Chinese CRC patients (n = 104). The functional role of CPEB1 in CRC was examined in experiments performed in vitro and in vivo. A candidate transcription factor capable of regulating CPEB1 expression was predicted in silico and validated by luciferase reporter, DNA pull-down, and electrophoretic mobility shift assays. Results Hypermethylation and decreased expression of CPEB1 in CRC tumour tissues were revealed by TCGA database. We also identified a significant inverse correlation (Pearson’s R = − 0.43, P CPEB1 expression. We validated these results in CRC samples and two CRC cell lines. We also demonstrated that up-regulation of CPEB1 resulted in significantly decreased tumour growth, migration, invasion, and tumorigenicity and promoted tumour cell apoptosis both in vitro and in vivo. We identified the transcription factors CCAAT enhancer-binding protein beta (CEBPB) and transcription factor CP2 (TFCP2) as critical regulators of CPEB1 expression. Hypermethylation of the CPEB1 promoter resulted in a simultaneous increase in the capacity for TFCP2 binding and a decreased likelihood of CEBPB binding, both of which led to diminished expression of CPEB1. Conclusions Our results identified a novel tumour-suppressive role of CPEB1 in CRC and found that hypermethylation of the CPEB1 promoter may lead to diminished expression due to decreased chromatin accessibility and transcription factor binding. Collectively, these results suggest a potential role for CPEB1 in the diagnosis and treatment of CRC.

Although the baculovirus expression vector system (BEVS) is widely used in the production of recombinant proteins, only a few lepidopteran insect cell lines have been successfully used so far. This study aimed at evaluating the characteristics of an embryonic cell line from the American cockroach Periplaneta americana L., RIRI-PA1, and determining whether it could be used in recombinant protein expression. Wild type Autographa californica multiple nucleopolyhedrovirus (AcMNPV-wt) and green fluorescent protein (GFP)-replicating recombinant baculoviruses (AcMNPV-GFP) were used to infect RIRI-PA1 respectively, demonstrating that RIRI-PA1 cells could be infected by AcMNPV and express recombinant proteins. Within 24 h of infection with AcMNPV-GFP, the GFP expression was higher than that in Sf21 cells. Furthermore, the infection of RIRI-PA1 cells increased gradually (multiplicity of infection, 10) within 24 h, while in Sf21 cells, the infection only began to increase within 48 h. However, after exposure for 96-168 h, the virus progeny and recombinant protein production of RIRI-PA1 cells was lower than those of Sf21 cells. Western blotting revealed that RIRI-PA1 cells could express recombinant GFP, and the protein expression level positively correlated with the multiplicity of infection. In conclusion, this is the first report that a cell line from P. americana has shown susceptibility to infection from a baculovirus and likewise express recombinant protein. Although the yield of recombinant GFP was not as high as that of Sf21 cells, the results nonetheless showed that RIRI-PA1 had an infection rate advantage in the short term (within 24 h of infection), which is of great value for further development and utilization.

PurposeThe objective of this report was to introduce a new suture augmentation of coracoclavicular and acromioclavicular ligament reconstruction for acute Rockwood grade III to V acromioclavicular dislocations.MethodsFrom January 2015 to January 2019, 43 patients with Rockwood III to VI acute acromioclavicular dislocations were retrospective reviewed. The outcome evaluations included coracoclavicular space, loss of reduction, and acromioclavicular space. The Disabilities of the Arm, Shoulder, and Hand questionnaire was used to assess the limb function. Clinical evaluation of patients was performed using the University of California-Los Angeles scoring systems. For comparison, another series of 28 patients treated with double Endobutton technique from January 2011 to December 2014 was reviewed. A P0.05), respectively. There were significant differences regarding coracoclavicular space (11.62±2.54 mm vs 16.78±5.53 mm; P

Accurate wind power forecasting is of great significance for power system operation. In this study, a triple-stage multi-step wind power forecasting approach is proposed by applying attention-based deep residual gated recurrent unit (GRU) network combined with ensemble empirical mode decomposition (EEMD) and crisscross optimization algorithm (CSO). In the data processing stage, the EEMD is used to decompose the wind power/speed time series and a bi-attention mechanism (BA) is applied to enhance the sensitivity of model to the important information from both time and feature dimension. In the prediction stage, a series-connected deep learning model called RGRU consisting of the residual network and GRU is proposed as the forecasting model, aiming to make full use of extracting the static and dynamic coupling relationship among the input features. In the retraining-stage, a high-performance CSO algorithm is adopted to further optimize the fully-connected layer of RGRU model so as to improve the generalization ability of the model. The proposed method is validated on a wind farm located in Spain and the experimental results demonstrate that the proposed hybrid model has significant advantage over other state-of-the-art models involved in this study in terms of prediction accuracy and stability.

The North Palawan Canyon is a large, previously undescribed submarine canyon that incises the continental shelf and slope of the southern South China Sea. Using multibeam bathymetric data and two-d...

For galling aphids and their hosts, tannins are crucial for plant-insect interactions and for protecting the host plant from herbivory. Due to their peculiar chemical characteristics, tannins from plant galls have been used for medical and chemical purposes for more than 2000 years. In this study, hydrolyzable tannin concentrations in galls increased from gall initiation (38.34% on June 21) to maturation (74.79% on August 8), then decreased gradually thereafter (58.83% on October 12). We identified a total of 81 genes (named as GTS1-81) with putative roles in gallotannin biosynthesis and 22 genes (TS1-22) in condensed tannin biosynthesis. We determined the expression profiles of these genes by real-time PCR over the course of gall development. Multiple genes encoding 1-beta-D-glucosyl transferases were identified, which may play a vital role in gallotannin accumulation in plant galls. This study is the first attempt to examine the molecular basis for the regulation of tannin accumulation in insect gallnuts. The differentially expressed genes we identified may play important roles in both tannin biosynthesis and plant-insect interactions.

Epigenetic modifications, including DNA methylation, play an important role in the pathogenesis of autoimmune diseases. In this study, we characterized the DNA methylome in primary T cells of patients with systemic sclerosis. Genome-wide DNA methylation assays of CD4+ and CD8+ T cells from 24 systemic sclerosis patients and 24 matched controls were conducted and differentially methylated regions were validated. In the discovery stage, we found that hypomethylation of genes involved in the type I IFN signaling pathway was significantly enriched in both CD4+ (P = 7.59 × 10−6) and CD8+ (P = 2.10 × 10−8) differentially methylated regions. In the validation stage, we confirmed these changes for five type I IFN−associated genes. In addition, protein levels of both type I IFN-α (P

The objective of this report was to introduce a new suture augmentation of coracoclavicular (CC) and acromioclavicular ligament reconstruction for acute Rockwood grade III to V acromioclavicular dislocations. From January 2015 to January 2019, 43 patients with Rockwood III to VI acute acromioclavicular dislocations were retrospectively reviewed. For comparison, another series of 28 patients treated with double Endobutton technique from January 2011 to December 2014 were reviewed. A P .05), respectively. There were significant differences regarding CC space (11.62 ± 2.54 mm vs 16.78 ± 5.53 mm; P

In this paper, ABCD matrix is introduced to study the paraxial transmission of light on a constant gaussian curvature surface (CGCS), which is the first time to our knowledge. It is also proved that the curved surface can be used as the implementation of fractional Fourier transform, we further generalize that we can obtain the transfer matrix of an arbitrary surface with gently varying curvature by matrix optics. As a beam propagation example, based on the Collins integral, an analytical propagation formula for the hollow Gaussian beams (HGBs) on the CGCS is derived. The propagation characteristics of HGBs on one CGCS are illustrated graphically in detail, including the change of dark spots size and splitting rays. Besides its propagation periodicity and diffraction properties, a criterion for convergence and divergence of the spot size is proposed. The area of the dark region of the HGBs can easily be controlled by proper choice of the beam parameters and the shape of CGCS. In addition, we also study the special propagation properties of the hollow beam with a fractional order. Compared with HGBs in flat space, these novel characteristics of HGBs propagation on curved surface may further expand the application range of hollow beam., Comment: 11 pages, 5 figures

Behçet’s disease (BD) is a multi-systemic inflammatory disease. Previous reports indicated that MICA*009 confers susceptibility to BD. MICA*049 differs from MICA*009:01, a major MICA*009 subtype, only at codon 335 in exon 6. However, the potential association of MICA*049 with BD has not been addressed. In this study, we differentiated association among MICA*049, MICA*009 and HLA-B*51 with BD. A Han Chinese cohort consisting of 41 BD patients and 197 ethnically matched controls were examined with sequencing and T-ARMS-PCR for genotyping of MICA, and ARMS-PCR for HLA-B*51. The phenotype frequency of MICA*049 (41.5% versus 8.1%, OR = 8.01, P = 1.91 × 10−8) and HLA-B*51 (46.3% versus 15.7%, OR = 4.62, P = 1.21 × 10−5) were significantly higher in BD patients than those in controls, whereas MICA*009 showed no significant difference between the two groups (17.1% versus 13.2%, OR = 1.35, P = 0.51). After stratification for the effect of HLA-B*51, MICA*049 was still associated with BD in HLA-B*51 negative patients (OR = 40.61, P = 0.02). Our results indicate that MICA*049, not MICA*009, is a risk factor to BD, and that is independent from HLA-B*51 in the Han Chinese cohort.

With the development of communication technology and network technology, as well as the rising popularity of digital electronic products, an image has become an important carrier of access to outside information. However, images are vulnerable to noise interference during collection, transmission and storage, thereby decreasing image quality. Therefore, image noise reduction processing is necessary to obtain higher-quality images. For the characteristics of its multi-analysis, relativity removal, low entropy, and flexible bases, the wavelet transform has become a powerful tool in the field of image de-noising. The wavelet transform in application mathematics has a rapid development. De-noising methods based on wavelet transform is proposed and achieved with good results, but shortcomings still remain. Traditional threshold functions have some deficiencies in image de-noising. A hard threshold function is discontinuous, whereas a soft threshold function causes constant deviation. To address these shortcomings, a method for removing image noise is proposed in this paper. First, the method decomposes the noise image to determine the wavelet coefficients. Second, the wavelet coefficient is applied on the high-frequency part of the threshold processing by using the improved threshold function. Finally, the de-noised images are obtained to rebuild the images in accordance with the estimation in the wavelet-based conditions. Experiment results show that this method, discussed in this paper, is better than traditional hard threshold de-noising and soft threshold de-noising methods, in terms of objective effects and subjective visual effects.

Reviews are collaboratively generated by users on items and generally contain rich information than ratings in a recommender system scenario. Ratings are modeled successfully with latent space models by capturing interaction between users and items. However, only a few models collaboratively deal with documents such as reviews. In this study, by modeling reviews as a three-order tensor, we propose a refined tensor topic model (TTM) for text tensors inspired by Tucker decomposition. User and item dimensions are co-reduced with vocabulary space, and interactions between users and items are captured using a core tensor in dimension-reduced form. TTM is proposed to obtain low-rank representations of words as well as of users and items. Furthermore, general rules are developed to transform a decomposition model into a probabilistic model. TTM is augmented further to predict ratings with the assistance of a low-dimensional representation of users and items obtained by TTM. This augmented model is called matrix factorization by learning a bilinear map. A core regularized version is further developed to incorporate additional information from the TTM. Encouraging experimental results not only show that the TTM outperforms existing topic models in modeling texts with a user-item-word structure, but also show that our proposed rating prediction models outperform state-of-the-art approaches.

Background The genes of SPARC, CCR2, and SMAD3 are implicated in orchestrating inflammatory response that leads to fibrosis in scleroderma and other fibrotic disorders. The aim of the studies is to evaluate synergistic anti-fibrotic potency of the siRNAs of these genes. Methods The efficacy of the siRNA-combination was evaluated in bleomycin-induced mouse fibrosis. The pathological changes of skin and lungs of the mice were assessed by hematoxylin and eosin and Masson's trichrome stains. The expression of inflammation and fibrosis associated genes and proteins in the tissues were assessed by real-time RT-PCR, RNA sequencing, Western blots and ELISA. Non-crosslinked fibrillar collagen was measured by the Sircol colorimetric assay. Findings The applications of the combined siRNAs in bleomycin-induced mice achieved favorable anti-inflammatory and anti-fibrotic effects. Activation of fibroblasts was suppressed in parallel with inhibition of inflammation evidenced by reduced inflammatory cells and proinflammatory cytokines in the BALF and/or the tissues by the treatment. Aberrant expression of the genes normally expressed in fibroblasts, monocytes/ macrophage, endothelial and epithelial cells were significantly restrained after the treatment. In addition, transcriptome profiles indicated that some bleomycin-induced alterations of multiple biological pathways were recovered to varying degrees by the treatment. Interpretation The application of the combined siRNAs of SPARC, CCR2, and SMAD3 genes ameliorated inflammation and fibrosis in bleomycin-induced mice. It systemically reinstated multiple biopathways, probably through controlling on different cell types including fibroblasts, monocytes/macrophages, endothelial cells and others. The multi-target-combined therapeutic approach examined herein may represent a novel and effective therapy for fibrosis., Graphical abstract Synopsis Through combined siRNAs targeting triple genes of Sparc, Ccr2, and Smad3 to control on different cell types including fibroblasts, monocytes/macrophages, endothelial cells systemically recovered multiple signaling biopathways of fibrogenesis, indicating a novel effective strategy for anti-fibrosis.•Triple combination of siRNAs targeting on Sparc, Ccr2 and Smad3 achieved favorable anti-inflammatory and anti-fibrotic effects.•Inhibition of inflammation was evidenced by reduced inflammatory cells and proinflammatory cytokines in the BALF and/or the tissues.•Activation of fibroblasts was suppressed in mouse tissues in which α-Sma and collagens were significantly reduced.•Aberrant expression of the genes in fibroblasts, monocytes/macrophage, endothelial and epithelial cells were reinstalled after the treatment.•Transcriptome profiles indicated that some bleomycin-induced alterations of multiple biological pathways were recovered to varying degrees by the treatment.Unlabelled Image

Endothelial cell injury and subsequent inflammation play pivotal roles in the pathogenesis of pulmonary fibrosis, a progressive and fatal disorder. We found previously that salvianolic acid B (SAB) attenuated experimental pulmonary fibrosis. Pulmonary fibrosis is driven by inflammation, but the anti-inflammatory role and mechanism of SAB on the treatment of pulmonary fibrosis is still unknown. Here, our in vivo studies showed that SAB had a strong anti-inflammatory effect on bleomycin-instilled mice by inhibiting inflammatory cell infiltration and inflammatory cytokine production. Moreover, SAB protected endothelial cells against oxidative stress injury and inhibited endothelial cell apoptosis in bleomycin-treated mice. The in vitro studies also showed that SAB decreased the H2O2-induced overproduction of reactive oxygen species to protect EA.hy926 endothelial cells from oxidative damage, and further inhibited H2O2-induced permeability and overexpression of pro-inflammatory molecules. The next studies revealed that SAB inhibited the H2O2-induced cell apoptosis and attenuated the decrease of tight junction-related gene expression, resulting in a decrease of the endothelial permeability in injured endothelial cells. Furthermore, Western blot analysis suggested that SAB decreased endothelial cell permeability and expression of pro-inflammatory cytokines by inhibiting MAPK and NF-κB signaling pathways. Taken together, these data indicate that SAB exerted anti-inflammatory roles in pulmonary fibrosis by protection of the endothelial cells against oxidative stress injury, mediated by inhibition of endothelial permeability and expression of pro-inflammatory cytokine via the MAPK and NF-κB signaling pathways.

Epigenetic modifications, including DNA methylation, play an important role in the pathogenesis of autoimmune diseases. In this study, we characterized the DNA methylome in primary T cells of patients with systemic sclerosis. Genome-wide DNA methylation assays of CD4

Scleroderma is a fibrosis-related disorder characterized by cutaneous and internal organ fibrosis, and excessive collagen deposition in extracellular matrix (ECM) is a major cause of fibrosis. Transforming growth factor-β (TGF-β)/SMAD signaling has a central role in the pathogenesis of fibrosis by inducing abnormal collagen accumulation in ECM, and latent TGF-β-binding protein 4 (LTBP-4) affects the secretion of latent TGF-β to ECM. A previous study indicated that bleomycin (BLM) treatment increased LTBP-4 expression in lung fibroblasts of Thy-1 knockout mice with lung fibrosis, and LTBP-4 further promoted TGF-β bioavailability as well as SMAD3 phosphorylation. However, the expression and function of LTBP-4 in human scleroderma remain unclear. We aimed to investigate the potential role of LTBP-4 in scleroderma through clinical, in vivo and in vitro studies. LTBP-4 and TGF-β expressions were significantly upregulated in systemic scleroderma (SSc) patients' plasma compared with normal controls (LTBP-4, 1,215±100.2 vs 542.8±41.7 ng/ml, P