41 results on '"Wei-Bing Liu"'
Search Results
2. Regioselective synthesis of anilines and β-dibrominated acetamides from N-aryl acetoacetamides mediated by Cu(I) salts
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Li-Quan Tan, Wei-Bing Liu, Peng Zhou, Cui Chen, and Qing Zhang
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Anilines ,β-Dibrominated acetamides ,Regioselective synthesis ,Cleavage of carbon–carbon bond ,Cleavage of carbon–nitrogen bond ,Chemistry ,QD1-999 - Abstract
A highly regioselective synthetic strategy mediated by Cu(I) salts is presented for the synthesis of anilines and β-dibrominated acetamides from N-aryl acetoacetamides. A variety of N-aryl acetoacetamides were used in this protocol, and a wide range of polysubstituted anilines and β-dibrominated acetamides were obtained in moderate to good yields. When employing CuI as the additive in this strategy, anilines are obtained, however, when using CuBr as the partner of CuI under a mild condition, β-dibrominated acetamides are afforded.
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- 2016
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3. GlnR-Mediated Regulation of Short-Chain Fatty Acid Assimilation in Mycobacterium smegmatis
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Xin-Xin Liu, Meng-Jia Shen, Wei-Bing Liu, and Bang-Ce Ye
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propionyl-CoA/acetyl-CoA synthetase ,GlnR ,short-chain fatty acid ,nitrogen metabolism ,post-translational modification ,acylation ,Microbiology ,QR1-502 - Abstract
Assimilation of short-chain fatty acids (SCFAs) plays an important role in the survival and lipid biosynthesis of Mycobacteria. However, regulation of this process has not been thoroughly described. In the present work, we demonstrate that GlnR as a well-known nitrogen-sensing regulator transcriptionally modulates the AMP-forming propionyl-CoA synthetase (MsPrpE), and acetyl-CoA synthetases (MsAcs) is associated with SCFAs assimilation in Mycobacterium smegmatis, a model Mycobacterium. GlnR can directly activate the expression of MsprpE and Msacs by binding to their promoter regions based upon sensed nitrogen starvation in the host. Moreover, GlnR can activate the expression of lysine acetyltransferase encoding Mspat, which significantly decreases the activity of MsPrpE and MsAcs through increased acylation. Next, growth curves and resazurin assay show that GlnR can further regulate the growth of M. smegmatis on different SCFAs to control the viability. These results demonstrate that GlnR-mediated regulation of SCFA assimilation in response to the change of nitrogen signal serves to control the survival of M. smegmatis. These findings provide insights into the survival and nutrient utilization mechanisms of Mycobacteria in their host, which may enable new strategies in drug discovery for the control of tuberculosis.
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- 2018
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4. Organic synthesis using (diacetoxyiodo)benzene (DIB): Unexpected and novel oxidation of 3-oxo-butanamides to 2,2-dihalo-N-phenylacetamides
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Wei-Bing Liu, Cui Chen, Qing Zhang, and Zhi-Bo Zhu
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cleavage of carbon–carbon bond ,(diacetoxyiodo)benzene ,difunctionalized acetamides ,novel oxidation ,3-oxo-N-phenylbutanamides ,Science ,Organic chemistry ,QD241-441 - Abstract
A novel and reliable method for the direct preparation of 2,2-dihalo-N-phenylacetamides is reported. The key transformation involves the cleavage of a carbon–carbon bond in the presence of DIB and a Lewis acid as the halogen source, and thus this method significantly expands the value of DIB as a unique and powerful tool in chemical synthesis. This protocol not only adds a new aspect to reactions that use other hypervalent iodine reagents but also provides a wide space for the synthesis of disubstituted acetamides.
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- 2012
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5. Hypervalent iodine(III)-induced methylene acetoxylation of 3-oxo-N-substituted butanamides
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Wei-Bing Liu, Cui Chen, Qing Zhang, and Zhi-Bo Zhu
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1-carbamoyl-2-oxopropyl acetate derivatives ,C-hetero bond ,(diacetoxyiodo)benzene ,methylene acetoxylation ,Science ,Organic chemistry ,QD241-441 - Abstract
1-Carbamoyl-2-oxopropyl acetate derivatives were synthesized through an acetoxylation process to methylene with the aid of (diacetoxyiodo)benzene (DIB) as the oxidant. Not only mild reaction conditions, but also excellent yields and good substrate scope make the present protocol potentially useful in organic synthesis.
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- 2011
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6. Prediction and characterization of small non-coding RNAs related to secondary metabolites in Saccharopolyspora erythraea.
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Wei-Bing Liu, Yang Shi, Li-Li Yao, Ying Zhou, and Bang-Ce Ye
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Medicine ,Science - Abstract
Saccharopolyspora erythraea produces a large number of secondary metabolites with biological activities, including erythromycin. Elucidation of the mechanisms through which the production of these secondary metabolites is regulated may help to identify new strategies for improved biosynthesis of erythromycin. In this paper, we describe the systematic prediction and analysis of small non-coding RNAs (sRNAs) in S. erythraea, with the aim to elucidate sRNA-mediated regulation of secondary metabolite biosynthesis. In silico and deep-sequencing technologies were applied to predict sRNAs in S. erythraea. Six hundred and forty-seven potential sRNA loci were identified, of which 382 cis-encoded antisense RNA are complementary to protein-coding regions and 265 predicted transcripts are located in intergenic regions. Six candidate sRNAs (sernc292, sernc293, sernc350, sernc351, sernc361, and sernc389) belong to four gene clusters (tpc3, pke, pks6, and nrps5) that are involved in secondary metabolite biosynthesis. Deep-sequencing data showed that the expression of all sRNAs in the strain HL3168 E3 (E3) was higher than that in NRRL23338 (M), except for sernc292 and sernc361 expression. The relative expression of six sRNAs in strain M and E3 were validated by qRT-PCR at three different time points (24, 48, and 72 h). The results showed that, at each time point, the transcription levels of sernc293, sernc350, sernc351, and sernc389 were higher in E3 than in M, with the largest difference observed at 72 h, whereas no signals for sernc292 and sernc361 were detected. sernc293, sernc350, sernc351, and sernc389 probably regulate iron transport, terpene metabolism, geosmin synthesis, and polyketide biosynthesis, respectively. The major significance of this study is the successful prediction and identification of sRNAs in genomic regions close to the secondary metabolism-related genes in S. erythraea. A better understanding of the sRNA-target interaction would help to elucidate the complete range of functions of sRNAs in S. erythraea, including sRNA-mediated regulation of erythromycin biosynthesis.
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- 2013
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7. Overexpression of Capsular Polysaccharide Biosynthesis Protein in Lactobacillus plantarum P1 to Enhance Capsular Polysaccharide Production for Di-n-butyl Phthalate Adsorption
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Wei-Bing Liu, Bang-Ce Ye, Ying Zhou, and Zhi-Wei Lin
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chemistry.chemical_classification ,biology ,Microorganism ,Phthalate ,General Medicine ,Carbohydrate ,biology.organism_classification ,Polysaccharide ,Applied Microbiology and Biotechnology ,Lactic acid ,chemistry.chemical_compound ,chemistry ,Generally recognized as safe ,Food science ,Bacteria ,Lactobacillus plantarum ,Biotechnology - Abstract
Exopolysaccharides (EPSs) are important bioactive carbohydrate compound such as Capsular polysaccharide (CPS). EPSs are often used as bioenrichment agents and bioabsorbers to remove environmental pollutants like di-n-butyl phthalate (DBP). Among the EPSs producing bacteria, lactic acid bacteria (LAB) have gained the most attention. As generally recognized as safe (GRAS) microorganisms, LAB can produce EPSs with many different structures without any health risks. However, the EPSs production of LAB is usually not enough for large-scale application in industrial production. Here, capA gene (encoding CPS biosynthesis protein) was overexpressed in Lactobacillus plantarum P1 to improve the production of EPSs and further enhance the capability of the adsorption of DBP. Compared with P1, the CPS production in capA overexpressed strain was increased by 11.3 mg/L, and the EPSs thickness was increased from 0.0786±0.0224μm in P1 to 0.1160±0.0480μm in P1-capA. These caused the adsorption ratio of DBP in P1-capA to be doubled. Overall, the findings in this study provided a safe solution for the adsorption and removing of DBP.
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- 2021
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8. Multi-agent Decision Model and Application Based on Recurrent Neural Network and Particle Swarm Optimization.
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Ming Li, Wei-bing Liu, and Xian-Jia Wang
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- 2008
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9. GlnR‐mediated regulation of KstR controls cholesterol catabolism in Mycobacterium smegmatis
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Xiao-Peng Zhang, Hao-Qi Hu, Hao Yuan, Heng Ma, Bang-Ce Ye, Sheng-Di Gu, and Wei-Bing Liu
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0106 biological sciences ,Nitrogen ,Mycobacterium smegmatis ,Biomedical Engineering ,Regulator ,Bioengineering ,01 natural sciences ,Applied Microbiology and Biotechnology ,Microbiology ,Mycobacterium tuberculosis ,03 medical and health sciences ,Bacterial Proteins ,Downregulation and upregulation ,010608 biotechnology ,Drug Discovery ,Humans ,Tuberculosis ,Gene ,030304 developmental biology ,0303 health sciences ,biology ,Chemistry ,Process Chemistry and Technology ,Promoter ,Gene Expression Regulation, Bacterial ,General Medicine ,biology.organism_classification ,In vitro ,Cholesterol ,Molecular Medicine ,Energy source ,Biotechnology - Abstract
Tuberculosis, caused by mycobacteria, continues to pose a substantial public health threat. Mycobacteria typically use cholesterol from the membranes of host macrophages as a carbon and energy source. Most genes that control cholesterol degradation are regulated by KstR, which is highly conserved in Mycobacterium tuberculosis and Mycobacterium smegmatis. Through bioinformatic analysis, we found a typical global nitrogen regulator (GlnR)-binding motif (CCGAC-AACAGT-GACAC) in the promoter region of kstR of M. smegmatis, and we determined its binding activity in vitro using electrophoretic mobility shift assays. Using RT-qPCR, we found that nine genes involved in side-chain or sterol-ring oxidation were upregulated in a ΔglnR M. smegmatis strain compared to the WT strain and glnR-complemented strains under nitrogen limitation. ATP assays in macrophages revealed that coordinated GlnR-KstR regulation significantly reduced the viability of M. smegmatis in macrophages. Thus, we found that various genes involved in cholesterol catabolism are regualted by GlnR via KstR in response to environmental nitrogen, and that they further affect the invasive ability of M. smegmatis. These findings revealed a novel regulatory mechanism of cholesterol catabolism, which may be useful in the development of new strategies for controlling tuberculosis. This article is protected by copyright. All rights reserved.
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- 2021
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10. Low-dose lipopolysaccharide protects nerve cells against spinal cord injury via regulating the PI3K-AKT-Nrf2 signaling pathway
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Jie Liu, Cheng-Kui Geng, Jun Zhang, Shao-Ping Yao, Wei-Bing Liu, and Wei-Chao Li
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Lipopolysaccharides ,NF-E2-Related Factor 2 ,Caspase 3 ,Apoptosis ,medicine.disease_cause ,Protective Agents ,Biochemistry ,PC12 Cells ,Flow cytometry ,Phosphatidylinositol 3-Kinases ,medicine ,Animals ,Molecular Biology ,Protein kinase B ,PI3K/AKT/mTOR pathway ,Cells, Cultured ,Spinal Cord Injuries ,Neurons ,TUNEL assay ,medicine.diagnostic_test ,Dose-Response Relationship, Drug ,Chemistry ,Cell Biology ,Cell biology ,Rats ,Signal transduction ,Proto-Oncogene Proteins c-akt ,Oxidative stress ,Signal Transduction - Abstract
This study explored the molecular mechanism behind the protective effects from low-dose lipopolysaccharide (LPS) on an in-vitro model of spinal cord injury (SCI). For this, PC12 cells were treated with different concentrations of LPS and the cell counting kit-8 assay was used to measure the toxicity of LPS to the cells. Next, we used immunofluorescence to measure nuclear translocation of Nrf2 in PC12 cells. PC12 cells were then treated with IGF-1 (PI3K agonist) and LY294002 (PI3K inhibitor). An in-vitro model of SCI was then established via oxygen–glucose deprivation/reoxygenation. Rates of apoptosis were measured using flow cytometry and the TUNEL assay. Low-dose LPS increased the expression levels of Nrf2, p-PI3K/PI3K, and p-AKT/AKT, and facilitated nuclear translocation of Nrf2. The activation of PI3K–AKT signaling by IGF-1 significantly increased the expression of Nrf2, whereas inhibition of PI3K–AKT signaling significantly decreased the expression of Nrf2. Low-dose LPS reduced the apoptotic ratio of PC12 cells, decreased the expression levels of caspase 3 and caspase 9, and increased the expression levels of HO-1, NQO1, and γ-GCS. Low-dose LPS also reduced the rate of apoptosis and oxidative stress by activating the PI3K–AKT–Nrf2 signaling pathway. Collectively, the results indicate that PI3K–AKT–Nrf2 signaling participates in the protective effects from low-dose LPS in an in-vitro PC12 cell model of SCI.
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- 2021
11. miR-25 Promotes Melanoma Progression by regulating RNA binding motif protein 47
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Qun-Qun Jiang and Wei-Bing Liu
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0301 basic medicine ,Skin Neoplasms ,Biology ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Cell Movement ,medicine ,Humans ,Melanoma ,Protein kinase B ,Cells, Cultured ,PI3K/AKT/mTOR pathway ,Cell Proliferation ,Regulation of gene expression ,Reporter gene ,Cell growth ,RNA-Binding Proteins ,General Medicine ,medicine.disease ,Gene Expression Regulation, Neoplastic ,MicroRNAs ,030104 developmental biology ,Tumor progression ,Disease Progression ,Cancer research ,Skin cancer - Abstract
Melanoma is the most aggressive skin cancer, and accounts for the major part of skin cancer-related deaths in the world. In addition, the underlying mechanism of tumor progression in melanoma remains far from being elucidated. In this study, we have evaluated the function of miR-25 in melanoma. First, we examined the expression of miR-25 in four melanoma cell lines (A875, MV3, M14 and uacc-257) and in a normal melanocyte cell line (HEM-a). Then, we overexpressed miR-25 in M14 cells. Our results show that miR-25 promotes M14 cell proliferation and migration. We found that miR-25 up-regulates the PI3K/Akt/mTOR signaling pathway in these tumor cells. Furthermore, a luciferase-based reporter gene assay showed that miR-25 could directly target the RNA-binding motif protein 47 (RBM47). Taken together, our findings suggest that RBM47 is a promising target for the treatment of melanoma.
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- 2018
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12. Lycorine inhibits melanoma A375 cell growth and metastasis through the inactivation of the PI3K/AKT signaling pathway
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Qun-Qun Jiang and Wei-Bing Liu
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0301 basic medicine ,Skin Neoplasms ,Apoptosis ,General Biochemistry, Genetics and Molecular Biology ,Metastasis ,Phosphatidylinositol 3-Kinases ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Immune system ,Cell Movement ,medicine ,Humans ,Neoplasm Metastasis ,Melanoma ,Cells, Cultured ,PI3K/AKT/mTOR pathway ,Cell Proliferation ,Phosphoinositide-3 Kinase Inhibitors ,biology ,Akt/PKB signaling pathway ,General Medicine ,Lycorine ,medicine.disease ,Antineoplastic Agents, Phytogenic ,Phenanthridines ,030104 developmental biology ,chemistry ,030220 oncology & carcinogenesis ,Amaryllidaceae Alkaloids ,Cancer research ,biology.protein ,Antibody ,Proto-Oncogene Proteins c-akt ,Signal Transduction - Abstract
Malignant melanoma, one of the most aggressive skin cancers, has a very high mortality rate. Currently, the number of drugs to treat melanoma is low. Although new immunotherapeutic approaches based on the use of antibodies against immune checkpoints have shown long term responses, it is urgent to develop novel anti-melanoma drugs with a high efficiency and a low toxicity in a large number of patients. Lycorine, a natural product, has been reported to exert antitumor effects on some cancers. However, the impact of lycorine on melanoma cells is still unknown. Using the CCK8 assay, we found that lycorine can suppress the proliferation of melanoma A375 cells in a dose-time-dependent manner. Moreover, a transwell assay showed that lycorine inhibited the migration and invasion of A375 cells significantly. Further, lycorine treatment could induce the apoptosis of the A375 cells. Biochemical analyses showed that the expression level of the anti-apoptosis Bcl-2 protein decreased, while the expression of the pro-apoptosis protein Bax and active caspase-3 increased after lycorine treatment. Finally, using western blot assay, we found that the antitumor effects of lycorine on A375 cells might be through the inactivation of the PI3K/Akt signaling pathway. Based on these observations, we suggest that lycorine may be an interesting candidate for further studies on its ability to represent a novel antitumor drug for human melanoma treatment in the future.
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- 2018
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13. The Nitrogen Regulator GlnR Directly Controls Transcription of the prpDBC Operon Involved in Methylcitrate Cycle in Mycobacterium smegmatis
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Bang-Ce Ye, Wei-Bing Liu, Xin-Xin Liu, Guo-Lan She, and Meng-Jia Shen
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0303 health sciences ,biology ,030306 microbiology ,Operon ,Mycobacterium smegmatis ,Promoter ,Methylisocitrate lyase ,Metabolism ,biology.organism_classification ,Microbiology ,03 medical and health sciences ,Biochemistry ,Transcription (biology) ,Dehydratase ,Binding site ,Molecular Biology ,030304 developmental biology - Abstract
Mycobacterium tuberculosis utilizes fatty acids of the host as the carbon source. Metabolism of odd-chain fatty acids by Mycobacterium tuberculosis produces propionyl coenzyme A (propionyl-CoA). The methylcitrate cycle is essential for mycobacteria to utilize the propionyl-CoA to persist and grow on these fatty acids. In M. smegmatis, methylcitrate synthase, methylcitrate dehydratase, and methylisocitrate lyase involved in the methylcitrate cycle are encoded by prpC, prpD, and prpB, respectively, in operon prpDBC. In this study, we found that the nitrogen regulator GlnR directly binds to the promoter region of the prpDBC operon and inhibits its transcription. The binding motif of GlnR was identified by bioinformatic analysis and validated using DNase I footprinting and electrophoretic mobility shift assays. The GlnR-binding motif is separated by a 164-bp sequence from the binding site of PrpR, a pathway-specific transcriptional activator of methylcitrate cycle, but the binding affinity of GlnR to prpDBC is much stronger than that of PrpR. Deletion of glnR resulted in faster growth in propionate or cholesterol medium compared with the wild-type strain. The ΔglnR mutant strain also showed a higher survival rate in macrophages. These results illustrated that the nitrogen regulator GlnR regulates the methylcitrate cycle through direct repression of the transcription of the prpDBC operon. This finding not only suggests an unprecedented link between nitrogen metabolism and the methylcitrate pathway but also reveals a potential target for controlling the growth of pathogenic mycobacteria. IMPORTANCE The success of mycobacteria survival in macrophage depends on its ability to assimilate fatty acids and cholesterol from the host. The cholesterol and fatty acids are catabolized via β-oxidation to generate propionyl coenzyme A (propionyl-CoA), which is then primarily metabolized via the methylcitrate cycle. Here, we found a typical GlnR binding box in the prp operon, and the affinity is much stronger than that of PrpR, a transcriptional activator of methylcitrate cycle. Furthermore, GlnR repressed the transcription of the prp operon. Deletion of glnR significantly enhanced the growth of Mycobacterium tuberculosis in propionate or cholesterol medium, as well as viability in macrophages. These findings provide new insights into the regulatory mechanisms underlying the cross talk of nitrogen and carbon metabolisms in mycobacteria.
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- 2019
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14. The Nitrogen Regulator GlnR Directly Controls Transcription of the
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Wei-Bing, Liu, Xin-Xin, Liu, Meng-Jia, Shen, Guo-Lan, She, and Bang-Ce, Ye
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DNA, Bacterial ,Binding Sites ,Transcription, Genetic ,Mycobacterium smegmatis ,Citrate (si)-Synthase ,Gene Expression Regulation, Bacterial ,Repressor Proteins ,Bacterial Proteins ,Operon ,Citrates ,Carbon-Carbon Lyases ,Promoter Regions, Genetic ,Gene Deletion ,Hydro-Lyases ,Metabolic Networks and Pathways ,Protein Binding ,Research Article - Abstract
Mycobacterium tuberculosis utilizes fatty acids of the host as the carbon source. Metabolism of odd-chain fatty acids by Mycobacterium tuberculosis produces propionyl coenzyme A (propionyl-CoA). The methylcitrate cycle is essential for mycobacteria to utilize the propionyl-CoA to persist and grow on these fatty acids. In M. smegmatis, methylcitrate synthase, methylcitrate dehydratase, and methylisocitrate lyase involved in the methylcitrate cycle are encoded by prpC, prpD, and prpB, respectively, in operon prpDBC. In this study, we found that the nitrogen regulator GlnR directly binds to the promoter region of the prpDBC operon and inhibits its transcription. The binding motif of GlnR was identified by bioinformatic analysis and validated using DNase I footprinting and electrophoretic mobility shift assays. The GlnR-binding motif is separated by a 164-bp sequence from the binding site of PrpR, a pathway-specific transcriptional activator of methylcitrate cycle, but the binding affinity of GlnR to prpDBC is much stronger than that of PrpR. Deletion of glnR resulted in faster growth in propionate or cholesterol medium compared with the wild-type strain. The ΔglnR mutant strain also showed a higher survival rate in macrophages. These results illustrated that the nitrogen regulator GlnR regulates the methylcitrate cycle through direct repression of the transcription of the prpDBC operon. This finding not only suggests an unprecedented link between nitrogen metabolism and the methylcitrate pathway but also reveals a potential target for controlling the growth of pathogenic mycobacteria. IMPORTANCE The success of mycobacteria survival in macrophage depends on its ability to assimilate fatty acids and cholesterol from the host. The cholesterol and fatty acids are catabolized via β-oxidation to generate propionyl coenzyme A (propionyl-CoA), which is then primarily metabolized via the methylcitrate cycle. Here, we found a typical GlnR binding box in the prp operon, and the affinity is much stronger than that of PrpR, a transcriptional activator of methylcitrate cycle. Furthermore, GlnR repressed the transcription of the prp operon. Deletion of glnR significantly enhanced the growth of Mycobacterium tuberculosis in propionate or cholesterol medium, as well as viability in macrophages. These findings provide new insights into the regulatory mechanisms underlying the cross talk of nitrogen and carbon metabolisms in mycobacteria.
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- 2019
15. Regulation of a Protein Acetyltransferase in Myxococcus xanthus by the Coenzyme NADP +
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Xin-Xin Liu, Wei-Bing Liu, and Bang-Ce Ye
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0301 basic medicine ,Myxococcus xanthus ,Rossmann fold ,Molecular Sequence Data ,Coenzymes ,Acetate-CoA Ligase ,Microbiology ,Gene Expression Regulation, Enzymologic ,Cofactor ,03 medical and health sciences ,Bacterial Proteins ,Amino Acid Sequence ,Binding site ,Molecular Biology ,Binding Sites ,biology ,Gene Expression Regulation, Bacterial ,Articles ,biology.organism_classification ,Kinetics ,030104 developmental biology ,Biochemistry ,Acetylation ,Acetyltransferase ,biology.protein ,NAD+ kinase ,Sequence Alignment ,NADP ,Binding domain - Abstract
NADP + is a vital cofactor involved in a wide variety of activities, such as redox potential and cell death. Here, we show that NADP + negatively regulates an acetyltransferase from Myxococcus xanthus , Mxan_3215 ( Mx Kat), at physiologic concentrations. Mx Kat possesses an NAD(P)-binding domain fused to the Gcn5-type N -acetyltransferase (GNAT) domain. We used isothermal titration calorimetry (ITC) and a coupled enzyme assay to show that NADP + bound to Mx Kat and that the binding had strong effects on enzyme activity. The Gly11 residue of Mx Kat was confirmed to play an important role in NADP + binding using site-directed mutagenesis and circular dichroism spectrometry. In addition, using mass spectrometry, site-directed mutagenesis, and a coupling enzymatic assay, we demonstrated that Mx Kat acetylates acetyl coenzyme A (acetyl-CoA) synthetase (Mxan_2570) at Lys622 in response to changes in NADP + concentration. Collectively, our results uncovered a mechanism of protein acetyltransferase regulation by the coenzyme NADP + at physiological concentrations, suggesting a novel signaling pathway for the regulation of cellular protein acetylation. IMPORTANCE Microorganisms have developed various protein posttranslational modifications (PTMs), which enable cells to respond quickly to changes in the intracellular and extracellular milieus. This work provides the first biochemical characterization of a protein acetyltransferase ( Mx Kat) that contains a fusion between a GNAT domain and NADP + -binding domain with Rossmann folds, and it demonstrates a novel signaling pathway for regulating cellular protein acetylation in M. xanthus . We found that NADP + specifically binds to the Rossmann fold of Mx Kat and negatively regulates its acetyltransferase activity. This finding provides novel insight for connecting cellular metabolic status (NADP + metabolism) with levels of protein acetylation, and it extends our understanding of the regulatory mechanisms underlying PTMs.
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- 2016
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16. Nitrogen regulator GlnR controls uptake and utilization of non-phosphotransferase-system carbon sources in actinomycetes
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Bang-Ce Ye, Wei-Bing Liu, Ya Xu, Ying Zhou, Chengheng Liao, and Li-Li Yao
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Multidisciplinary ,Carbohydrate transport ,Nitrogen ,PII Nitrogen Regulatory Proteins ,Regulator ,Mannose ,PEP group translocation ,Metabolism ,Maltose ,Biological Sciences ,Biology ,biology.organism_classification ,Carbon ,Actinobacteria ,chemistry.chemical_compound ,chemistry ,Biochemistry ,ATP-Binding Cassette Transporters ,Pii nitrogen regulatory proteins ,Saccharopolyspora erythraea ,Saccharopolyspora - Abstract
The regulatory mechanisms underlying the uptake and utilization of multiple types of carbohydrates in actinomycetes remain poorly understood. In this study, we show that GlnR (central regulator of nitrogen metabolism) serves as a universal regulator of nitrogen metabolism and plays an important, previously unknown role in controlling the transport of non-phosphotransferase-system (PTS) carbon sources in actinomycetes. It was observed that GlnR can directly interact with the promoters of most (13 of 20) carbohydrate ATP-binding cassette (ABC) transporter loci and can activate the transcription of these genes in response to nitrogen availability in industrial, erythromycin-producing Saccharopolyspora erythraea. Deletion of the glnR gene resulted in severe growth retardation under the culture conditions used, with select ABC-transported carbohydrates (maltose, sorbitol, mannitol, cellobiose, trehalose, or mannose) used as the sole carbon source. Furthermore, we found that GlnR-mediated regulation of carbohydrate transport was highly conserved in actinomycetes. These results demonstrate that GlnR serves a role beyond nitrogen metabolism, mediating critical functions in carbon metabolism and crosstalk of nitrogen- and carbon-metabolism pathways in response to the nutritional states of cells. These findings provide insights into the molecular regulation of transport and metabolism of non-PTS carbohydrates and reveal potential applications for the cofermentation of biomass-derived sugars in the production of biofuels and bio-based chemicals.
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- 2015
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17. Nitrogen regulator GlnR directly controls transcription ofprpDBCoperon involved in methylcitrate cycle inMycobacterium smegmatis
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Bang-Ce Ye, Meng-Jia Shen, Wei-Bing Liu, and Xin-Xin Liu
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biology ,Biochemistry ,Operon ,Transcription (biology) ,Chemistry ,Mycobacterium smegmatis ,Dehydratase ,Methylisocitrate lyase ,Promoter ,Electrophoretic mobility shift assay ,Binding site ,biology.organism_classification - Abstract
Mycobacterium tuberculosisutilizes the fatty acids of the host as the carbon source. While the metabolism of odd chain fatty acids produces propionyl-CoA. Methylcitrate cycle is essential for Mycobacteria to utilize the propionyl-CoA to persist and grow on these fatty acids. InM. smegmatis, methylcitrate synthase, methylcitrate dehydratase, and methylisocitrate lyase involved in methylcitrate cycle were respectively encoded byprpC,prpD,and prpBin operonprpDBC. In this study, we found that the nitrogen regulator GlnR directly binds to the promoter region ofprpDBCoperon and inhibits its transcription. The typical binding sequence of GlnR was identified by bioinformatics analysis and electrophoretic mobility shift assay. The GlnR-binding motif was seperated by 164 bp with the binding site of PrpR which was a pathway-specific transcriptional activator of methylcitrate cycle. Moreover, the affinity constant of GlnR was much stronger than that of PrpR toprpDBC. The deletion ofglnRresulted in poor growth in propionate or cholesterol medium comparing with wild-type strain. The ΔglnRmutant strain also showed a higher survival in macrophages. These results illustrated that the nitrogen regulator GlnR regulated methylcitrate cycle through directly repressing the transcription ofprpDBCoperon. The finding reveals an unprecedented link between nitrogen metabolism and methylcitrate pathway, and provides a potential application for controlling populations of pathogenic mycobacteria.Author SummaryNutrients are crucial for the survival and pathogenicity ofMycobacterium tuberculosis. The success of this pathogen survival in macrophage due to its ability to assimilate fatty acids and cholesterol from host. The cholesterol and fatty acids are catabolized via β-oxidation to generate propionyl-CoA, which is then mainly metabolized via the methylcitrate cycle. The assimilation of propionyl-CoA needs to be tightly regulated to prevent its accumulation and alleviate toxicity in cell. Here, we identified a new regulator GlnR (the nitrogen transcriptional regulator) that repressed the transcription ofprpoperon involved in methylcitrate cycle inM. smegmatis. In this study, we found a typical GlnR binding box inprpoperon, and the affinity is much stronger than that of PrpR which is known as a pathway-specific transcriptional activator of methylcitrate cycle. In addition, deletion ofglnRobviously affect the growth of mutant in propionate or cholesterol medium, and show a better viability in macrophage. The findings not only provide the insights into the regulatory mechanism underlying crosstalk of nitrogen metabolism and carbon metabolism, but also reveal a potential application for controlling populations of pathogenic mycobacteria.
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- 2018
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18. Transcriptional and post-translational regulation of AccD6 in Mycobacterium smegmatis
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Xin-Xin Liu, Bang-Ce Ye, Wei-Bing Liu, and Meng-Jia Shen
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0301 basic medicine ,Transcription, Genetic ,Protein subunit ,030106 microbiology ,Mutant ,Mycobacterium smegmatis ,Microbiology ,Gene Expression Regulation, Enzymologic ,03 medical and health sciences ,Bacterial Proteins ,Transcription (biology) ,Genetics ,Post-translational regulation ,RNA Processing, Post-Transcriptional ,Molecular Biology ,biology ,Chemistry ,Promoter ,Acetylation ,Gene Expression Regulation, Bacterial ,biology.organism_classification ,Pyruvate carboxylase ,Cell biology ,Carbon-Carbon Ligases ,lipids (amino acids, peptides, and proteins) ,Acyl Coenzyme A ,Acetyl-CoA Carboxylase ,Protein Binding - Abstract
AccD6 is an important component of acetyl-CoA/propionyl-CoA carboxylase, which acts as a key role in mycolic acid synthesis and short chain fatty acyl-coenzyme A metabolism. In this study, we demonstrated that AccD6 of Mycobacterium smegmatis associates with AccA3 (α subunit of acetyl-CoA carboxylase, MSMEG_1807) and AccE (e subunit, MSMEG_1812) to form the acetyl-CoA (propionyl-CoA) carboxylase. Results showed that the MSMEG_4331 subunit is a regulator that interacts with the promoter region of accD6 to inhibit its transcription. Transcription of accD6 was reduced by 50% in the mutant M. smegmatis strain overexpressing MSMEG_4331. Moreover, the activity of AccD6 was inhibited by acylation (such as acetylation and propionylation). These results demonstrate that AccD6 of M. smegmatis is regulated at both the transcriptional and post-translational levels. Our findings highlight the novel regulatory mechanism underlying mycolic acid biosynthesis in mycobacteria.
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- 2017
19. Expression and Displaying of β-Glucosidase from Streptomyces Coelicolor A3 in Escherichia coli
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Wei-Bing Liu, Jing-Chao Wang, Bang-Ce Ye, Ying Zhou, and Ming-Zhu Gu
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Cell ,Streptomyces coelicolor ,Bioengineering ,Biology ,Protein Engineering ,Transfection ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,Biochemistry ,law.invention ,law ,Enzyme Stability ,Escherichia coli ,medicine ,Molecular Biology ,β glucosidase ,Gene ,chemistry.chemical_classification ,Molecular mass ,beta-Glucosidase ,General Medicine ,biology.organism_classification ,Recombinant Proteins ,Enzyme Activation ,medicine.anatomical_structure ,Enzyme ,chemistry ,Recombinant DNA ,Biotechnology - Abstract
Two genes encoding β-glucosidase from Streptomyces coelicolor A3(2) were cloned and expressed in Escherichia coli BL21 (DE3). Two recombinant enzymes (SC1059 and SC7558) were purified and characterized. The molecular mass of the purified SC1059 and SC7558 as determined by SDS-PAGE agrees with the calculated values (51.0 and 52.2 kDa, respectively). Optimal temperature and pH for the two enzymes were both at 35 °C and 6.0. SC7558 exhibited to be much more active than SC1059 under optimal conditions, and it was recombined with ice nucleation protein which could anchor on the surface of the cell. The optimal temperature and pH of the recombinant cells were 55 °C and 8.0, respectively. The resultant cells were to be used as material for immobilized β-glucosidase, which is convenient to catalyze substrates in various complicated conditions.
- Published
- 2013
- Full Text
- View/download PDF
20. Treatment of oral lichen planus using 308-nm excimer laser
- Author
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Yan-Fei Wang, Wei-Bing Liu, Li-Wei Sun, and Hua Yang
- Subjects
Adult ,Male ,medicine.medical_specialty ,medicine.medical_treatment ,T-Lymphocytes ,Apoptosis ,Dermatology ,Narrow spectrum ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,stomatognathic system ,308 nm excimer laser ,Medicine ,Effective treatment ,Humans ,Aged ,Lymphocytic infiltration ,integumentary system ,Excimer laser ,Mild pain ,business.industry ,Therapeutic effect ,Remission Induction ,030206 dentistry ,General Medicine ,Middle Aged ,medicine.disease ,stomatognathic diseases ,Treatment Outcome ,Oral lichen planus ,Female ,Lasers, Excimer ,business ,Lichen Planus, Oral - Abstract
Oral lichen planus (OLP) is a chronic inflammatory disease, has prolonged courses, repeated attacks and resistance to treatment. The traditional narrow spectrum UVB treatment has an established efficacy on skin lichen planus, and high safety. However, most of ultraviolet phototherapy devices have a huge volume, thereby cannot be used in the treatment of OLP. Lymphocytic infiltration is evident in the lesions of lichen planus, and the direct irradiation of 308-nm excimer laser can induce apoptosis of the T lymphocytes in skin lesions, thereby has a unique therapeutic effect on the diseases involving T lymphocytes. This study aims to investigate the efficacy of 308-nm excimer laser in the treatment of OLP. A total of six OLP patients were enrolled into this study, and further pathological diagnosis was conducted, then 308-nm excimer laser was used in the treatment. The efficacy of 308-nm excimer laser in the treatment of OLP was satisfactory. The clinical symptoms of five patients were significantly improved. In two patients, the erosion surface based on congestion and the surrounding white spots completely disappeared, and clinical recovery was achieved. Three patients achieved partial remission, that is, the erosion surface healed, congestion and white spot area shrunk by more than 1/2 of the primary skin lesions. In the remaining one patient, the erosion surface had not completely healed after treatment, and congestion and white spot area shrunk by less than 1/2 of the primary skin lesions. Only one patients had developed mild pain during the treatment, and this symptom alleviated by itself. The 308-nm excimer laser therapy can serve as a safe and effective treatment for OLP.
- Published
- 2016
21. Synthesis and Structural Diversity of Four Coordination Polymers with the Ligand 1-(3-Aminopropyl)-imidazole
- Author
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Pei-Yu Li, Zhao-Peng Qi, Wei-Bing Liu, Chang-Jiang Li, Xing Cheng, Long Chen, and Zong-Hui Kang
- Subjects
chemistry.chemical_classification ,Ligand ,Chemistry ,Metal ions in aqueous solution ,chemistry.chemical_element ,Polymer ,Copper ,Inorganic Chemistry ,Metal ,Nickel ,Crystallography ,chemistry.chemical_compound ,visual_art ,visual_art.visual_art_medium ,Organic chemistry ,Imidazole ,Self-assembly - Abstract
Four new metal complexes {[Cu(api)2(H2O)]·(ClO4)2·CH3CN}n (1), [Cu(api)2(ClO4)2]n (2), [Cd(api)2(SCN)2]n (3) and [Ni(api)2(SCN)2]n (4) (api = 1-(3-Aminopropyl)-imidazole) were synthesized by reactions of api and different metal salts under different conditions. Interestingly, complexes 1–3 exhibit various one dimensional (1D) double chain structures, while complex 4 shows a 2D layer structure. The results indicate that metal ions, anions, solvents, and the synthesis methods, have great influence on the formation and structure of the complexes.
- Published
- 2012
- Full Text
- View/download PDF
22. Evolution of Cooperation in Continuous Prisoner's Dilemma Games on Barabasi—Albert Networks with Degree-Dependent Guilt Mechanism
- Author
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Ji Quan, Wei-Bing Liu, and Xianjia Wang
- Subjects
Microeconomics ,Dilemma ,education.field_of_study ,Physics and Astronomy (miscellaneous) ,Computer science ,Stochastic game ,Population ,Network structure ,Convex combination ,Prisoner's dilemma ,Baseline level ,education - Abstract
This paper studies the continuous prisoner's dilemma games (CPDG) on Barabasi—Albert (BA) networks. In the model, each agent on a vertex of the networks makes an investment and interacts with all of his neighboring agents. Making an investment is costly, but which benefits its neighboring agents, where benefit and cost depend on the level of investment made. The payoff of each agent is given by the sum of payoffs it receives in its interactions with all its neighbors. Not only payoff, individual's guilty emotion in the games has also been considered. The negative guilty emotion produced in comparing with its neighbors can reduce the utility of individuals directly. We assume that the reduction amount depends on the individual's degree and a baseline level parameter. The group's cooperative level is characterized by the average investment of the population. Each player makes his investment in the next step based on a convex combination of the investment of his best neighbors in the last step, his best history strategies in the latest steps which number is controlled by a memory length parameter, and a uniformly distributed random number. Simulation results show that this degree-dependent guilt mechanism can promote the evolution of cooperation dramatically comparing with degree-independent guilt or no guilt cases. Imitation, memory, uncertainty coefficients and network structure also play determinant roles in the cooperation level of the population. All our results may shed some new light on studying the evolution of cooperation based on network reciprocity mechanisms.
- Published
- 2012
- Full Text
- View/download PDF
23. 1:1 and 2:1 Copper(II) Adduct Complexes with a Tripodal Ligand and Imidazole, Pyridine, and 4,4′-Bipyridine
- Author
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Fengkai Hu, Zhao-Peng Qi, Wei-Bing Liu, Han Xu, Hui Zhang, and Jin‐Yu Sun
- Subjects
Ligand ,Inorganic chemistry ,chemistry.chemical_element ,Medicinal chemistry ,Copper ,Adduct ,4,4'-Bipyridine ,Inorganic Chemistry ,Metal ,chemistry.chemical_compound ,chemistry ,Tripodal ligand ,visual_art ,Pyridine ,visual_art.visual_art_medium ,Imidazole - Abstract
Four new copper(II) complexes [Cu(HL)(im)](ClO4)2 (1), [Cu(HL)(py)](ClO4)2 (2), [Cu2(HL)2(bpy)2](ClO4)4·H2O (3), and [Cu2(HL)2(bpy)](ClO4)4·H2O (4) (im = imidazole; py = pyridine; bpy = 4,4′-bipyridine) were synthesized by reactions of tripodal ligandN1-(2-aminoethyl)-N1-(1H-imidazol-4-ylmethyl)-ethane-1,2-diamine(HL) and Cu(ClO4)2·6H2O with different nitrogen-containing aromatic ligands. It was found that the size of the N-containing aromatic ligand, and the ratio of the ligand and metal ion, have great influence on the formation and structure of the complexes.
- Published
- 2011
- Full Text
- View/download PDF
24. Study on Numerical Simulation Method of Periodic Symmetric Struts Support Coupling with Heat Flow and Solid
- Author
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Wei Bing Liu, Zhen Shi Li, Mamtimin Gheni, Lie Yu, and Wei Cheng
- Subjects
Coupling ,Materials science ,Computer simulation ,Scale (ratio) ,Field (physics) ,business.industry ,Mechanical Engineering ,Structural engineering ,Mechanics ,Finite element method ,Thermal conductivity ,Mechanics of Materials ,Thermal ,General Materials Science ,Boundary value problem ,business - Abstract
In this paper, the fluid solid coupling method is used and the FE (Finite Element) analysis is conducted for the PSSS (Periodic Symmetric Struts Support) of the large scale GT(Gas Turbine), and the overall thermal stress and thermal deformation are obtained. From the structure feature of the gas turbine, the initial boundary conditions of the high-temperature gas flow field and thermal deformation are analyzed at first. Then the coupling relationship between fluid and solid two phases is expressed mathematically, and the thermal conductivity is considered for calculation of heat transfer process, and the overall temperature field is obtained. Finally the thermal boundary condition of PSSS is defined and the structural FE analysis is conducted. At the same time, the thermal stress field and thermal deformation field are discussed for overall PSSS structure.
- Published
- 2011
- Full Text
- View/download PDF
25. Numerical Study on Self-Consistency Centering Process of Periodic Symmetric Struts Support
- Author
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Ji Zhe Hai, Wei Chen, Mamtimin Gheni, Wei Bing Liu, and Lie Yu
- Subjects
Coupling ,Engineering ,Bearing (mechanical) ,Field (physics) ,business.industry ,Internal flow ,Turbulence ,Mechanical Engineering ,Process (computing) ,Structural engineering ,Mechanics ,Computational fluid dynamics ,law.invention ,Software ,Mechanics of Materials ,law ,General Materials Science ,business - Abstract
In this paper,the simplified three-dimensional model of Periodic Symmetric Struts Support (PSSS) was established, which is applied to a certain type of gas turbine. The software of computational fluid Dynamics (CFD) and the standard k-ε turbulence model are used in the numerical simulation.To simulate the coupling problems of fluid and solid,the numerical models by considering the heat transfer problem coupling with the solid and fluid have been developed.The internal flow field in PSSS was numerically simulated by an effective method for solving integrated coupling problems. The temperature field and thermal deformation rule of the PSSS was obtained. Through comparison coordinate values of the checked points before and after thermal deformation, the impact of thermal deformation on bearing center level height under temperature load was studied. The centering process of the PSSS at high temperature state was verified.
- Published
- 2011
- Full Text
- View/download PDF
26. Effect of Mesh Size of Finite Element Analysis in Modal Analysis for Periodic Symmetric Struts Support
- Author
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Wei Bing Liu, Mamtimin Gheni, and Lie Yu
- Subjects
Engineering ,Basis (linear algebra) ,Computer simulation ,business.industry ,Mechanical Engineering ,Modal analysis ,Modal analysis using FEM ,Mixed finite element method ,Structural engineering ,Finite element method ,Mechanics of Materials ,Mesh generation ,General Materials Science ,Element (category theory) ,business - Abstract
Meshing for finite element analysis accuracy plays a very important part in numerical simulation of Periodic Symmetric Struts Support (PSSS). Different accuracy can be obtained by different element sizes or types. Three element types and eight element sizes are used for comparing the accuracy of modal analysis in this paper. Comparing with the mutual relations of different accuracy, the scientific basis is provided for selecting the correct mesh size and improves the efficiency of numerical calculation in modal analysis.
- Published
- 2011
- Full Text
- View/download PDF
27. Study on Dynamic Response and the Effect to Center Level Height of Periodic Symmetric Struts Support
- Author
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Lie Yu, Wei Bing Liu, and Mamtimin Gheni
- Subjects
Gas turbines ,Engineering ,Field (physics) ,business.industry ,Mechanical Engineering ,Process (computing) ,Structural engineering ,Center (group theory) ,Stability (probability) ,Finite element method ,Mechanics of Materials ,Thermal ,General Materials Science ,business ,Parametric statistics - Abstract
In this paper, in order to overcome the technical difficulty of center level height of Periodic Symmetric Struts Support (PSSS) by using the test in the field and reduce the high cost of testing, the method of the finite element analysis by considering thermal condition and the dynamic response is used and the center level height of PSSS is evaluated. Some relations for center level height changing process of PSSS were found and some parametric effects are obtained for the stability analysis of gas turbine by changing the number of struts support and angle.
- Published
- 2011
- Full Text
- View/download PDF
28. Dynamic Decision Model in Evolutionary Games Based on Reinforcement Learning
- Author
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Wei-bing Liu and Xianjia Wang
- Subjects
Learning classifier system ,Sequential game ,business.industry ,Combinatorial game theory ,Evolutionary robotics ,Evolutionary game theory ,Reinforcement learning ,Artificial intelligence ,Temporal difference learning ,business ,Game theory ,Mathematics - Abstract
In evolutionary games, it becomes more difficult to choose optimal strategies for players because of incomplete information and bounded rationality. For bounded rational players, how to maximize the expected sum of payoffs by learning and changing strategies is an important question in evolutionary game theory. Reinforcement learning does not need a model of its environment and can be used online, it is well-suited for problems with incomplete and uncertain information. Evolutionary game theory is the subject about the decision problems of multiagent with incomplete information. In this article, reinforcement learning is introduced in evolutionary games, multiagent reinforcement learning model is constructed, and the learning algorithm is presented based on Q -learning. The results of simulation experiments show that the multiagent reinforcement learning model can be applied successfully in evolutionary games for finding the optimal strategies.
- Published
- 2009
- Full Text
- View/download PDF
29. [Acupuncture for 30 cases of RNERD]
- Author
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Ji, Zhang, Wei-Bing, Liu, and Hong-Yu, Li
- Subjects
Adult ,Male ,Treatment Outcome ,Acupuncture Therapy ,Gastroesophageal Reflux ,Humans ,Female ,Middle Aged ,Aged - Published
- 2014
30. Genome Sequence of Saccharopolyspora erythraea D, a Hyperproducer of Erythromycin
- Author
-
Wen-Bang Yu, Bang-Ce Ye, Shu-Hong Gao, and Wei-Bing Liu
- Subjects
Genetics ,Whole genome sequencing ,biology ,Strain (biology) ,fungi ,Industrial setting ,Erythromycin ,food and beverages ,biology.organism_classification ,medicine ,Saccharopolyspora erythraea ,Prokaryotes ,Molecular Biology ,Bacteria ,medicine.drug - Abstract
Saccharopolyspora erythraea is a Gram-positive bacterium that can produce antibiotics. However, this microorganism must often be genetically improved for higher production before it can be used in an industrial setting. Here, we report the whole-genome sequence of the industrial hyperproducer strong mutator Saccharopolyspora erythraea strain D.
- Published
- 2013
31. ChemInform Abstract: Iodobenzene Diacetate (PIDA)/Zn(II)-Mediated Oxidation and Cleavage of C-C Bond: Formation of Substituted N-Aryl Carbamoyl Methyl Diacetates and Derivatives from 3-Oxo-butanamides
- Author
-
Cui Chen, Deng Zhaohui, Hu Wenjun, and Wei-Bing Liu
- Subjects
chemistry.chemical_compound ,PIDA ,chemistry ,Aryl ,education ,Iodobenzene ,Organic chemistry ,General Medicine ,Bond formation ,Cleavage (embryo) ,Medicinal chemistry ,Bond cleavage - Abstract
A mechanistic proposal for this novel transformation involving both C—O bond formation and C—C bond cleavage is given.
- Published
- 2013
- Full Text
- View/download PDF
32. Prediction and characterization of small non-coding RNAs related to secondary metabolites in Saccharopolyspora erythraea
- Author
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Bang-Ce Ye, Ying Zhou, Yang Shi, Wei-Bing Liu, and Li-Li Yao
- Subjects
In silico ,Science ,Secondary Metabolism ,Biology ,Intergenic region ,Transcription (biology) ,Secondary metabolism ,Gene ,Genetics ,Multidisciplinary ,Gene Expression Profiling ,High-Throughput Nucleotide Sequencing ,Reproducibility of Results ,Epistasis, Genetic ,Genomics ,biology.organism_classification ,Antisense RNA ,RNA, Bacterial ,Transfer RNA ,RNA, Small Untranslated ,Medicine ,Saccharopolyspora erythraea ,Research Article ,Genome-Wide Association Study ,Saccharopolyspora - Abstract
Saccharopolyspora erythraea produces a large number of secondary metabolites with biological activities, including erythromycin. Elucidation of the mechanisms through which the production of these secondary metabolites is regulated may help to identify new strategies for improved biosynthesis of erythromycin. In this paper, we describe the systematic prediction and analysis of small non-coding RNAs (sRNAs) in S. erythraea, with the aim to elucidate sRNA-mediated regulation of secondary metabolite biosynthesis. In silico and deep-sequencing technologies were applied to predict sRNAs in S. erythraea. Six hundred and forty-seven potential sRNA loci were identified, of which 382 cis-encoded antisense RNA are complementary to protein-coding regions and 265 predicted transcripts are located in intergenic regions. Six candidate sRNAs (sernc292, sernc293, sernc350, sernc351, sernc361, and sernc389) belong to four gene clusters (tpc3, pke, pks6, and nrps5) that are involved in secondary metabolite biosynthesis. Deep-sequencing data showed that the expression of all sRNAs in the strain HL3168 E3 (E3) was higher than that in NRRL23338 (M), except for sernc292 and sernc361 expression. The relative expression of six sRNAs in strain M and E3 were validated by qRT-PCR at three different time points (24, 48, and 72 h). The results showed that, at each time point, the transcription levels of sernc293, sernc350, sernc351, and sernc389 were higher in E3 than in M, with the largest difference observed at 72 h, whereas no signals for sernc292 and sernc361 were detected. sernc293, sernc350, sernc351, and sernc389 probably regulate iron transport, terpene metabolism, geosmin synthesis, and polyketide biosynthesis, respectively. The major significance of this study is the successful prediction and identification of sRNAs in genomic regions close to the secondary metabolism-related genes in S. erythraea. A better understanding of the sRNA-target interaction would help to elucidate the complete range of functions of sRNAs in S. erythraea, including sRNA-mediated regulation of erythromycin biosynthesis.
- Published
- 2013
33. Transcriptional and post-translational regulation of AccD6 in Mycobacterium smegmatis.
- Author
-
Xin-Xin Liu, Meng-Jia Shen, Wei-Bing Liu, and Bang-Ce Ye
- Subjects
MYCOBACTERIUM smegmatis ,GENE expression - Abstract
AccD6 is an important component of acetyl-CoA/propionyl-CoA carboxylase, which acts as a key role in mycolic acid synthesis and short chain fatty acyl-coenzyme A metabolism. In this study, we demonstrated that AccD6 of Mycobacterium smegmatis associates with AccA3 (α subunit of acetyl-CoA carboxylase, MSMEG 1807) and AccE (ε subunit, MSMEG 1812) to form the acetyl-CoA (propionyl-CoA) carboxylase. Results showed that the MSMEG 4331 subunit is a regulator that interacts with the promoter region of accD6 to inhibit its transcription. Transcription of accD6 was reduced by 50% in the mutant M. smegmatis strain overexpressing MSMEG 4331. Moreover, the activity of AccD6 was inhibited by acylation (such as acetylation and propionylation). These results demonstrate that AccD6 of M. smegmatis is regulated at both the transcriptional and post-translational levels. Our findings highlight the novel regulatory mechanism underlying mycolic acid biosynthesis in mycobacteria. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
34. Dynamic decision making in social security system
- Author
-
Min Li and Wei-bing Liu
- Subjects
Actuarial science ,ComputingMilieux_THECOMPUTINGPROFESSION ,Behavioural sciences ,Markov process ,Computer security model ,Social security ,Microeconomics ,symbols.namesake ,Economics ,symbols ,Markov decision process ,Decision model ,Dynamic decision-making ,Retirement age - Abstract
This paper studies the decision behavior of workers and characteristics of retirement age in social security system. Based on overlapping-generation model and Markov decision process, this paper constructs a dynamic decision model for social security system. In this model, workers choose their optimal retirement age taking into account the current social security system. In addition, this paper analyzes the equilibrium results. In the end, experiment simulation shows that social security system has some effects on the retirement behavior of workers.
- Published
- 2011
- Full Text
- View/download PDF
35. Serotype, genotype, and antimicrobial susceptibility profiles of Salmonella from chicken farms in Shanghai
- Author
-
Wei-Bing, Liu, Jing, Chen, Yan-Yan, Huang, Bin, Liu, and Xian-Ming, Shi
- Subjects
DNA, Bacterial ,China ,Genotype ,Food Contamination ,Microbial Sensitivity Tests ,Anti-Bacterial Agents ,Feces ,Consumer Product Safety ,Salmonella ,Drug Resistance, Multiple, Bacterial ,Food Microbiology ,Animals ,Humans ,Salmonella Food Poisoning ,Serotyping ,Chickens ,Phylogeny - Abstract
Five hundred fifty samples were collected from five chicken farms in Shanghai during March 2005 to October 2006. Twenty-five samples tested positive for Salmonella from a total of 550 samples, of which 500 were obtained from feces of healthy chickens and 50 were obtained from diseased chicks. The 25 presumptive Salmonella isolates were confirmed by the API 20E identification kit. Serotyping of these isolates by agglutination tests with antiserum displayed seven serovars; genotyping of these isolates with multilocus sequence typing demonstrated six sequence type (ST) patterns (i.e., ST-11, ST-19, ST-92, ST-96, ST-290, and ST-367). The multilocus sequence typing data revealed that some of these strains, isolated from different farms, might have the same ST and might come from the same source. The susceptibilities of these strains to 14 antimicrobials were determined; most of the isolates (13 of 25) were resistant to doxycycline and tetracycline, and two isolates were resistant to cefotaxime and ceftazidime, but none was resistant to gentamicin or kanamycin.
- Published
- 2010
36. Multi-agent Decision Model and Application Based on Recurrent Neural Network and Particle Swarm Optimization
- Author
-
Xian-jia Wang, Ming Li, and Wei-bing Liu
- Subjects
Artificial neural network ,Computer science ,business.industry ,Multi-agent system ,Particle swarm optimization ,Computer Science::Multiagent Systems ,Recurrent neural network ,Control theory ,Artificial intelligence ,Adaptive learning ,Multi-swarm optimization ,business ,Decision model ,Game theory - Abstract
This paper proposes a multi-agent decision model based on recurrent neural networks and particle swarm optimization technology. In this paper, the recurrent neural network is used for strategy decision controller. The inputs of the recurrent neural network are decided by the last strategies of other agents. Then the outputs determine the next strategy that the agent will choose. The weight values are updated by particle swarm optimization algorithm. The multi-agent decision model is applied in public goods games, and numerical results show that this decision model has the ability of adaptive learning and can prevent the collision between agents to realize the total social utility maximum.
- Published
- 2008
- Full Text
- View/download PDF
37. Iodobenzene Diacetate (PIDA)/Zn(II)-Mediated Oxidation and Cleavage of C–C Bond: Formation of Substituted N-aryl Carbamoyl Methyl Diacetates and Derivatives from 3-oxo-butanamides
- Author
-
Hu Wenjun, Cui Chen, Wei-Bing Liu, and Deng Zhaohui
- Subjects
PIDA ,chemistry.chemical_compound ,chemistry ,Aryl ,Iodobenzene ,General Chemistry ,Bond formation ,Cleavage (embryo) ,Medicinal chemistry ,Bond cleavage - Abstract
Various substituted N-aryl carbamoyl methyl diacetates have been synthesized from N-aryl-3-oxobutanamides via a diacetoxylation mediated by the combination of iodobenzene diacetate (PIDA)/Zn(OAc)2. This provides a new convenient method to form C–O bonds and cleave C–C bonds. Ten examples were obtained from easily available materials in good to excellent yields.
- Published
- 2012
- Full Text
- View/download PDF
38. Regulation of a Protein Acetyltransferase in Myxococcus xanthus by the Coenzyme NADP+.
- Author
-
Xin-Xin Liu, Wei-bing Liu, and Bang-Ce Ye
- Subjects
- *
ACETYLTRANSFERASES regulation , *MYXOCOCCUS xanthus , *NICOTINAMIDE adenine dinucleotide phosphate , *BACTERIOLYSIS , *ISOTHERMAL titration calorimetry , *SITE-specific mutagenesis - Abstract
NADP+ is a vital cofactor involved in a wide variety of activities, such as redox potential and cell death. Here, we show that NADP+ negatively regulates an acetyltransferase from Myxococcus xanthus, Mxan_3215 (MxKat), at physiologic concentrations. MxKat possesses an NAD(P)-binding domain fused to the Gcn5-type N-acetyltransferase (GNAT) domain. We used isothermal titration calorimetry (ITC) and a coupled enzyme assay to show that NADP+ bound to MxKat and that the binding had strong effects on enzyme activity. The Gly11 residue of MxKat was confirmed to play an important role in NADP+ binding using sitedirected mutagenesis and circular dichroism spectrometry. In addition, using mass spectrometry, site-directed mutagenesis, and a coupling enzymatic assay, we demonstrated that MxKat acetylates acetyl coenzyme A (acetyl-CoA) synthetase (Mxan_2570) at Lys622 in response to changes in NADP+ concentration. Collectively, our results uncovered a mechanism of protein acetyltransferase regulation by the coenzyme NADP+ at physiological concentrations, suggesting a novel signaling pathway for the regulation of cellular protein acetylation. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
39. Nitrogen regulator GlnR controls uptake and utilization of non-phosphotransferase-system carbon sources in actinomycetes.
- Author
-
Cheng-Heng Liao, Lili Yao, Ya Xu, Wei-Bing Liu, Ying Zhoua, and Bang-Ce Ye
- Subjects
ACTINOMYCETALES ,CARBOHYDRATE metabolism ,ATP-binding cassette transporters ,NITROGEN metabolism ,PHOSPHOTRANSFERASES - Abstract
The regulatory mechanisms underlying the uptake and utilization of multiple types of carbohydrates in actinomycetes remain poorly understood. In this study, we show that GlnR (central regulator of nitrogen metabolism) serves as a universal regulator of nitrogen metabolism and plays an important, previously unknown role in controlling the transport of non-phosphotransferase-system (PTS) carbon sources in actinomycetes. It was observed that GlnR can directly interact with the promoters of most (13 of 20) carbohydrate ATP-binding cassette (ABC) transporter loci and can activate the transcription of these genes in response to nitrogen availability in industrial, erythromycin-producing Saccharopolyspora erythraea. Deletion of the glnR gene resulted in severe growth retardation under the culture conditions used, with select ABC-transported carbohydrates (maltose, sorbitol, mannitol, cellobiose, trehalose, or mannose) used as the sole carbon source. Furthermore, we found that GlnR-mediated regulation of carbohydrate transport was highly conserved in actinomycetes. These results demonstrate that GlnR serves a role beyond nitrogen metabolism, mediating critical functions in carbon metabolism and crosstalk of nitrogen- and carbon-metabolism pathways in response to the nutritional states of cells. These findings provide insights into the molecular regulation of transport and metabolism of non-PTS carbohydrates and reveal potential applications for the cofermentation of biomass-derived sugars in the production of biofuels and bio-based chemicals. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
40. Two-Player and Two-Strategy Symmetric Evolutionary Game with Fluctuations
- Author
-
Wei-Bing, Liu, primary and Xian-Jia, Wang, additional
- Published
- 2007
- Full Text
- View/download PDF
41. Dynamic decision making in social security system.
- Author
-
Wei-bing Liu and Min Li
- Published
- 2011
- Full Text
- View/download PDF
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