28 results on '"Weeks SC"'
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2. Delineating the W sex chromosome in the clam shrimp, Eulimnadia texana.
- Author
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Ediriweera C and Weeks SC
- Abstract
Introduction: Sex chromosomes have evolved independently across various lineages, often showing convergent degradation of the sex-limited chromosome. While extensively studied in model organisms with ancient sex chromosomal systems, the evolution of early-stage sex chromosomes remains poorly understood. Eulimnadia texana, a freshwater crustacean with a unique androdioecious breeding system (ZZ, ZW, and viable WW genotypes), provides a rare opportunity to study early sex chromosome evolution. This study examines E. texana's W chromosome for evidence of a small localized non-recombining region, characterized by a transposable element (TE) "hotspot", low gene density, and low GC content., Methods: Sex-linked markers were mapped onto the W chromosome (Scaffold 1). TEs in the WW genome were identified using RepeatModeler and RepeatMasker. Statistical analyses compared TE distribution between the genome and Scaffold 1, which was then divided into 20 equal-sized "bins" for finer-scale statistical analyses. Gene density and GC content were analyzed across these bins., Results: While no significant TE accumulation was found across the entire W chromosome compared to the remaining genome, a specific region (6.6-8.8 Mb, fourth bin) showed significantly higher TE accumulation. This region also exhibited low gene density and low GC content, indicative of reduced recombination., Conclusion: Our findings suggest that E. texana's W chromosome contains a smaller region of crossover suppression, supporting the hypothesis that it is in a proto-sex chromosome in early evolutionary development. This study provides valuable insights into early sex chromosome evolution and establishes E. texana as an ideal model for further investigation of evolutionary processes driving proto-sex chromosome differentiation., (S. Karger AG, Basel.)
- Published
- 2024
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3. Preliminary Study of Temperature Effects on Size and Shape in the Modern Spinicaudatan Eulimnadia texana (Crustacea: Branchiopoda).
- Author
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Hethke M, Weeks SC, Schöttle V, and Rogers DC
- Abstract
Studies of temperature effects on morphology in Spinicaudata have focused on length, with no data on shape. To fill this gap, size and shape variability in response to temperature fluctuations was investigated by rearing the modern spinicaudatan Eulimnadia texana . Two days after hydration, juvenile individuals were separated into four different temperature treatments: 20°C, 23°C, 26°C, and 29°C. Hermaphrodite size and shape were analysed by looking at linear combinations of size variables and using Fourier shape analysis; methods that are also used to describe fossil size and shape for better comparison. Size differences were considerable, with reduced growth at low and high temperatures and accelerated growth at the optimum temperature of 26°C, revealing that the reaction of size to increasing temperature is non-linear. The height of the dorsal margin, which is associated with space for egg production in Eulimnadia texana , accounts for a high amount of size variability in this species and, presumably, in most of the Limnadiidae. Hermaphrodite shapes reared under temperatures of 20°C and 29°C are statistically distinct, while intermediate temperatures yield intermediate shapes. The rate of shape change along temperature is comparatively low between 23°C and 26°C and accelerated at lower and higher temperatures. With increasing temperature, the highest point of the dorsal margin is shifted towards the anterior of the carapace, while it assumes a median position at 20°C. Our result that temperature has strong effects on carapace size and shape implies considerable ecophenotypic variability in Spinicaudata.
- Published
- 2021
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4. Testing Weissman's Lineage Selection Model for the Maintenance of Sex: The Evolutionary Dynamics of Clam Shrimp Reproduction over Geologic Time.
- Author
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Astrop TI, Park Boush L, and Weeks SC
- Abstract
One of the most perplexing questions within evolutionary biology is: "why are there so many methods of reproduction?" Contemporary theories assume that sexual reproduction should allow long term survival as dispersal and recombination of genetic material provides a population of organisms with the ability to adapt to environmental change. One of the most frustrating aspects of studying the evolution of reproductive systems is that we have not yet been able to utilize information locked within the fossil record to assess breeding system evolution in deep time. While the fossil record provides us with information on an organism's living environment, as well as some aspects of its ecology, the preservation of biological interactions (reproduction, feeding, symbiosis, communication) is exceedingly rare. Using both information from extant taxa uncovered by a plethora of biological and ecological studies and the rich representation of the Spinicaudata (Branchiopoda: Crustacea) throughout the fossil record (from the Devonian to today), we address two hypotheses of reproductive evolutionary theory: (1) that unisexual species should be short lived and less speciose than their outcrossing counterparts and (2) that androdioecy (mixtures of males and hermaphrodites) is an unstable, transitionary system that should not persist over long periods of time. We find no evidence of all-unisexual spinicaudatan taxa (clam shrimp) in the fossil record, but do find evidence of both androdioecious and dioecious clam shrimp. We find that clades with many androdioecious species are less speciose but persist longer than their mostly dioecious counterparts. These data suggest that all-unisexual lineages likely do not persist long whereas mixtures of unisexual and sexual breeding can persist for evolutionarily long periods but tend to produce fewer species than mostly sexual breeding.
- Published
- 2020
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5. Population Density Effects on Carapace Growth in Clam Shrimp: Implications for Palaeontological Studies.
- Author
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Hethke M and Weeks SC
- Abstract
Fossil morphological data are time-averaged and generally reflect an overlap of different sources of carapace variability. To examine whether a proposed relationship between size and population density in fossil spinicaudatans is biologically meaningful, we set up rearing experiments involving two extant species: Eulimnadia texana and Eocyzicus argillaquus . Three and five days after hydration, clam shrimp were transferred into cups of various population densities that ranged between 1 and 15 inds/400 ml. Size and shape were measured 14 and 16 days after hydration, respectively. Every second day, we recorded length and sex of E. texana , which matured faster in lower-density cups. According to our growth model, population density and maximal carapace length follow a logarithmic relationship. At maturity, hermaphrodites yielded similar lengths across all population densities (~4.7 mm at 24°C), independent of age. Hence, clam shrimp can put off reproductive maturity as a response to decreased growth under higher density conditions. Growth rate generally decreases at maturity, but that effect is more pronounced in clam shrimp of high population densities, while low-density adults keep growing. For both species, multivariate analyses reveal that carapace size of low-density individuals is significantly larger than carapace size of higher-density individuals, while size values of intermediate densities cannot be distinguished. Shape distinction is strong in hermaphrodites of E. texana : 39.8% of the density-dependent shape variation is associated with relative umbo height, which is generally higher in individuals of smaller population densities. The H/L ratio, which is often used as a simple shape indicator, does not contribute to the main variation in shape, but it forms one of several ratios significant for 18.3% of the shape variability. In turn, the H/L ratio drives 30% of the shape variation in E. argillaquus . In addition, higher densities triggered shifts in ontogenetic growth trajectories in one third of the individuals, which led to aberrant morphologies. The present rearing experiment shows that some of the morphological variability on fossil bedding planes can be explained by population density. Also, it implies a considerable amount of ecophenotypic variability in Spinicaudata that affects our understanding of fossil taxonomy and palaeoecology.
- Published
- 2020
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6. A New Standard for Crustacean Genomes: The Highly Contiguous, Annotated Genome Assembly of the Clam Shrimp Eulimnadia texana Reveals HOX Gene Order and Identifies the Sex Chromosome.
- Author
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Baldwin-Brown JG, Weeks SC, and Long AD
- Subjects
- Animals, Female, Gene Order, Genes, Homeobox, Genetic Linkage, Genome, Male, Microsatellite Repeats, Sex Chromosomes, Arthropod Proteins genetics, Crustacea genetics, Genomics methods, Homeodomain Proteins genetics
- Abstract
Vernal pool clam shrimp (Eulimnadia texana) are a promising model system due to their ease of lab culture, short generation time, modest sized genome, a somewhat rare stable androdioecious sex determination system, and a requirement to reproduce via desiccated diapaused eggs. We generated a highly contiguous genome assembly using 46× of PacBio long read data and 216× of Illumina short reads, and annotated using Illumina RNAseq obtained from adult males or hermaphrodites. Of the 120 Mb genome 85% is contained in the largest eight contigs, the smallest of which is 4.6 Mb. The assembly contains 98% of transcripts predicted via RNAseq. This assembly is qualitatively different from scaffolded Illumina assemblies: It is produced from long reads that contain sequence data along their entire length, and is thus gap free. The contiguity of the assembly allows us to order the HOX genes within the genome, identifying two loci that contain HOX gene orthologs, and which approximately maintain the order observed in other arthropods. We identified a partial duplication of the Antennapedia complex adjacent to the few genes homologous to the Bithorax locus. Because the sex chromosome of an androdioecious species is of special interest, we used existing allozyme and microsatellite markers to identify the E. texana sex chromosome, and find that it comprises nearly half of the genome of this species. Linkage patterns indicate that recombination is extremely rare and perhaps absent in hermaphrodites, and as a result the location of the sex determining locus will be difficult to refine using recombination mapping., (© The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.)
- Published
- 2018
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7. A field test of a model for the stability of androdioecy in the freshwater shrimp, Eulimnadia texana.
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Weeks SC, Benvenuto C, Reed SK, Duff RJ, Duan ZH, and David P
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- Animals, Fresh Water, Inbreeding, Longevity, Male, Sex Ratio, Biological Evolution, Decapoda genetics, Hermaphroditic Organisms genetics, Models, Biological
- Abstract
The evolution of hermaphroditism from dioecy is a poorly studied transition. Androdioecy (the coexistence of males and hermaphrodites) has been suggested as an intermediate step in this evolutionary transition or could be a stable reproductive mode. Freshwater crustaceans in the genus Eulimnadia have reproduced via androdioecy for 24+ million years and thus are excellent organisms to test models of the stability of androdioecy. Two related models that allow for the stable maintenance of males and hermaphrodites rely on the counterbalancing of three life history parameters. We tested these models in the field over three field seasons and compared the results to previous laboratory estimates of these three parameters. Male and hermaphroditic ratios within years were not well predicted using either the simpler original model or a version of this model updated to account for differences between hermaphroditic types ('monogenic' and 'amphigenic' hermaphrodites). Using parameter estimates of the previous year to predict the next year's sex ratios revealed a much better fit to the original relative to the updated version of the model. Therefore, counter to expectations, accounting for differences between the two hermaphroditic types did not improve the fit of these models. At the moment, we lack strong evidence that the long-term maintenance of androdioecy in these crustaceans is the result of a balancing of life history parameters; other factors, such as metapopulation dynamics or evolutionary constraints, may better explain the 24+ million year maintenance of androdioecy in clam shrimp., (© 2014 European Society for Evolutionary Biology. Journal of Evolutionary Biology © 2014 European Society For Evolutionary Biology.)
- Published
- 2014
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8. The role of androdioecy and gynodioecy in mediating evolutionary transitions between dioecy and hermaphroditism in the animalia.
- Author
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Weeks SC
- Subjects
- Animals, Female, Male, Biological Evolution, Hermaphroditic Organisms
- Abstract
Dioecy (gonochorism) is dominant within the Animalia, although a recent review suggests hermaphroditism is also common. Evolutionary transitions from dioecy to hermaphroditism (or vice versa) have occurred frequently in animals, but few studies suggest the advantage of such transitions. In particular, few studies assess how hermaphroditism evolves from dioecy or whether androdioecy or gynodioecy should be an "intermediate" stage, as noted in plants. Herein, these transitions are assessed by documenting the numbers of androdioecious and gynodioecious animals and inferring their ancestral reproductive mode. Both systems are rare, but androdioecy was an order of magnitude more common than gynodioecy. Transitions from dioecious ancestors were commonly to androdioecy rather than gynodioecy. Hermaphrodites evolving from sexually dimorphic dioecious ancestors appear to be constrained to those with female-biased sex allocation; such hermaphrodites replace females to coexist with males. Hermaphrodites evolving from sexually monomorphic dioecious ancestors were not similarly constrained. Species transitioning from hermaphroditic ancestors were more commonly androdioecious than gynodioecious, contrasting with similar transitions in plants. In animals, such transitions were associated with size specialization between the sexes, whereas in plants these transitions were to avoid inbreeding depression. Further research should frame these reproductive transitions in a theoretical context, similar to botanical studies., (© 2012 The Author. Evolution© 2012 The Society for the Study of Evolution.)
- Published
- 2012
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9. Sex chromosome evolution in the clam shrimp, Eulimnadia texana.
- Author
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Weeks SC, Benvenuto C, Sanderson TF, and Duff RJ
- Subjects
- Animals, Crossing Over, Genetic genetics, DNA Primers genetics, Disorders of Sex Development, Female, Genotype, Male, Microsatellite Repeats genetics, Alleles, Decapoda genetics, Evolution, Molecular, Genetic Fitness genetics, Sex Chromosomes genetics
- Abstract
Chromosomes that determine sex are predicted to evolve differently than autosomes: a lack of recombination on one of the two sex chromosomes is predicted to allow an accumulation of deleterious alleles that eventually leads to reduced functionality and potential physical degradation of the nonrecombining chromosome. Because these changes should occur at an elevated evolutionary rate, it is difficult to find appropriate species in which to test these evolutionary predictions. The unique genetic sex-determining mechanism of the crustacean Eulimnadia texana prevents major chromosome degeneration because of expression of both 'proto-sex' (i.e. early stage of development) chromosomes in homozygous form (ZZ and WW). Herein, we exploit this unique genetic system to examine the predicted accumulation of deleterious alleles by comparing both homogametic sexual types to their heterogametic counterpart. We report differences in crossing over in a sex-linked region in the ZW hermaphrodites (approximately 3%) relative to the ZZ males (approximately 21%), indicative of cross-over suppression in the ZW hermaphrodites. Additionally, we report that both ZZ and WW genotypes have reduced fitness relative to ZW hermaphrodites, which is consistent with the prediction of harboured recessive mutations embedded on both the Z and the W chromosomes. These results suggest that the proto-sex chromosomes in E. texana accumulate recessive deleterious alleles. We hypothesize that recessive deleterious alleles of large effect cannot accumulate because of expression in both ZZ and WW individuals, keeping both chromosomes from losing significant function.
- Published
- 2010
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10. Evolutionary transitions among dioecy, androdioecy and hermaphroditism in limnadiid clam shrimp (Branchiopoda: Spinicaudata).
- Author
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Weeks SC, Chapman EG, Rogers DC, Senyo DM, and Hoeh WR
- Subjects
- Animals, Disorders of Sex Development, Female, Male, Sex Determination Processes, Crustacea genetics, Phylogeny
- Abstract
Examinations of breeding system transitions have primarily concentrated on the transition from hermaphroditism to dioecy, likely because of the preponderance of this transition within flowering plants. Fewer studies have considered the reverse transition: dioecy to hermaphroditism. A fruitful approach to studying this latter transition can be sought by studying clades in which transitions between dioecy and hermaphroditism have occurred multiple times. Freshwater crustaceans in the family Limnadiidae comprise dioecious, hermaphroditic and androdioecious (males + hermaphrodites) species, and thus this family represents an excellent model system for the assessment of the evolutionary transitions between these related breeding systems. Herein we report a phylogenetic assessment of breeding system transitions within the family using a total evidence comparative approach. We find that dioecy is the ancestral breeding system for the Limnadiidae and that a minimum of two independent transitions from dioecy to hermaphroditism occurred within this family, leading to (1) a Holarctic, all-hermaphrodite species, Limnadia lenticularis and (2) mixtures of hermaphrodites and males in the genus Eulimnadia. Both hermaphroditic derivatives are essentially females with only a small amount of energy allocated to male function. Within Eulimnadia, we find several all-hermaphrodite populations/species that have been independently derived at least twice from androdioecious progenitors within this genus. We discuss two adaptive (based on the notion of 'reproductive assurance') and one nonadaptive explanations for the derivation of all-hermaphroditism from androdioecy. We propose that L. lenticularis likely represents an all-hermaphrodite species that was derived from an androdioecious ancestor, much like the all-hermaphrodite populations derived from androdioecy currently observed within the Eulimnadia. Finally, we note that the proposed hypotheses for the dioecy to hermaphroditism transition are unable to explain the derivation of a fully functional, outcrossing hermaphroditic species from a dioecious progenitor.
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- 2009
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11. When males and hermaphrodites coexist: a review of androdioecy in animals.
- Author
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Weeks SC, Benvenuto C, and Reed SK
- Abstract
Androdioecy (populations consisting of males and hermaphrodites) is a rare mating system in plants and animals: up to 50 plants and only 36 animals have been described as being androdioecious, with most of the latter being crustaceans. To date, a thorough comparative analysis of androdioecy in animals has not been undertaken. Herein we present such an analysis. Androdioecy has only been extensively surveyed in 2 animal taxa: the nematode Caenorhabditis and the clam shrimp Eulimnadia. The other major taxon having androdioecious species is the Cirripedia (barnacles), but there are only limited studies on androdioecy in this group. In animals, androdioecy is found either in species that have morphologically and ecologically distinct sexes (that is, hermaphrodites and small, "complemental" males) that are derived from hermaphroditic ancestors (that is, the barnacles) or in species that have similarly-sized males and hermaphrodites that have been derived from dioecious ancestors (the remaining androdioecious species). We suggest that the barnacles have evolved a sexual specialization in the form of these complemental males that can more efficiently use the constrained habitats that these barnacles often experience. For the remaining species, we suggest that androdioecy has evolved as a response to reproductive assurance in species that experience episodic low densities. Additionally, we hypothesize that the development of mechanisms allowing reproductive assurance in species with a number of sexually differentiated traits is most likely to result in androdioecy rather than gynodioecy (mixtures of females and hermaphrodites), and that these species may be developmentally constrained to stay androdioecious rather than being capable of evolving into populations solely consisting of efficient, self-compatible hermaphrodites. We conclude by suggesting several areas in need of further study to understand more completely the evolution and distribution of this interesting mating system in animals.
- Published
- 2006
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12. Ancient androdioecy in the freshwater crustacean Eulimnadia.
- Author
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Weeks SC, Sanderson TF, Reed SK, Zofkova M, Knott B, Balaraman U, Pereira G, Senyo DM, and Hoeh WR
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- Animals, Base Sequence, Crustacea physiology, DNA chemistry, DNA genetics, Female, Male, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 28S chemistry, RNA, Ribosomal, 28S genetics, Sequence Alignment, Biological Evolution, Crustacea genetics, Disorders of Sex Development genetics
- Abstract
Among the variety of reproductive mechanisms exhibited by living systems, one permutation--androdioecy (mixtures of males and hermaphrodites)--is distinguished by its rarity. Models of mating system evolution predict that androdioecy should be a brief stage between hermaphroditism and dioecy (separate males and females), or vice versa. Herein we report evidence of widespread and ancient androdioecy in crustaceans in the genus Eulimnadia, based on observations of over 33,000 shrimp from 36 locations from every continent except Antarctica. Using phylogenetic, biogeographical and palaeontological evidence, we infer that androdioecy in Eulimnadia has persisted for 24-180 million years and has been maintained through multiple speciation events. These results suggest that androdioecy is a highly successful aspect of the life history of these freshwater crustaceans, and has persisted for orders of magnitude longer than predicted by current models of this rare breeding system.
- Published
- 2006
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13. Levels of inbreeding depression over seven generations of selfing in the androdioecious clam shrimp, Eulimnadia texana.
- Author
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Weeks SC
- Subjects
- Analysis of Variance, Animals, Crustacea physiology, Disorders of Sex Development genetics, Male, Pedigree, Sex Determination Processes, Crustacea genetics, Genetics, Population, Inbreeding, Models, Biological, Sexual Behavior, Animal physiology
- Abstract
Androdioecy (mixtures of males and hermaphrodites) is a rare mating system in both plants and animals. Theory suggests that high levels of inbreeding depression can maintain males in androdioecious populations if hermaphrodites commonly self-fertilize. However, if inbreeding depression (delta) can be 'purged' from selfing populations, maintaining males is more difficult. In the androdioecious clam shrimp, Eulimnadia texana, delta is estimated to be as high as 0.7. Previous work suggests that this high level is maintained in the face of high levels of inbreeding due to an associative overdominance of fitness-related loci with the sex-determining locus. Such associative overdominance would make purging of inbreeding depression difficult to impossible. The current experiment was designed to determine if delta can be purged in these shrimp by tracking fitness across seven generations in selfing and outcrossing treatments. Evidence of purging was found in one of four populations, but the remaining populations demonstrated a consistent pattern of delta across generations. Although the experimental design allowed ample opportunity for purging, the majority of populations were unable to purge their genetic load. Therefore, delta in this species is likely due to associative overdominance caused by deleterious recessive alleles linked to the sex determining locus.
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- 2004
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14. Relative fitness of two hermaphroditic mating types in the androdioecious clam shrimp, Eulimnadia texana.
- Author
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Weeks SC, Crosser BR, and Gray MM
- Abstract
Androdioecy (populations of males and hermaphrodites) is a rare reproductive form, being described from only a handful of plants and animals. One of these is the shrimp Eulimnadia texana, which has populations comprised of three mating types: two hermaphroditic types (monogenics and amphigenics) and males. In a recent study, the amphigenic hermaphrodites were found to be in greater abundance than that predicted from a model of this mating system. Herein, we compare the relative fitness of offspring from amphigenic and monogenic siblings, attempting to understand the greater relative abundance of the former. Populations started with offspring from selfed monogenic hermaphrodites had a net reproductive rate (R) 87% that of offspring from their amphigenic siblings. Additionally, within populations of amphigenic offspring (which included males, monogenics and amphigenics), amphigenics survived longer than monogenics. These differences help to explain the increased relative abundance of amphigenics in natural populations, but amphigenics continue to be more abundant than expected.
- Published
- 2001
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15. Maintenance of androdioecy in the freshwater shrimp, Eulimnadia texana: estimates of inbreeding depression in two populations.
- Author
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Weeks SC, Crosser BR, Bennett R, Gray M, and Zucker N
- Subjects
- Animals, Female, Male, Reproduction, Sexual Behavior, Animal, Decapoda physiology, Inbreeding
- Abstract
Androdioecy is an uncommon form of reproduction in which males coexist with hermaphrodites. Androdioecy is thought to be difficult to evolve in species that regularly inbreed. The freshwater shrimp Eulimnadia texana has recently been described as both androdioecious and highly selfing and is thus anomalous. Inbreeding depression is one factor that may maintain males in these populations. Here we examine the extent of "late" inbreeding depression (after sexual maturity) in these clam shrimp using two tests: (1) comparing the fitness of shrimp varying in their levels of individual heterozygosity from two natural populations that differ in overall genetic diversity; and (2) specifically outcrossing and selfing shrimp from these same populations and comparing fitness of the resulting offspring. The effects of inbreeding differed within each population. In the more genetically diverse population, fecundity, size, and mortality were significantly reduced in inbred shrimp. In the less genetically diverse population, none of the fitness measures was significantly lowered in selfed shrimp. Combining estimates of early inbreeding depression from a previous study with current estimates of late inbreeding depression suggests that inbreeding depression is substantial (delta = 0.68) in the more diverse population and somewhat lower (delta = 0.50) in the less diverse population. However, given that males have higher mortality rates than hermaphrodites, neither estimate of inbreeding depression is large enough to account for the maintenance of males in either population by inbreeding depression alone. Thus, the stability of androdioecy in this system is likely only if hermaphrodites are unable to self-fertilize many of their own eggs when not mated to a male or if male mating success is generally high (or at least high when males are rare). Patterns of fitness responses in the two populations were consistent with the hypothesis that inbreeding depression is caused by partially recessive deleterious alleles, although a formal test of this hypothesis still needs to be conducted.
- Published
- 2000
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16. INBREEDING DEPRESSION IN A SELF-COMPATIBLE, ANDRODIOECIOUS CRUSTACEAN, EULIMNADIA TEXANA.
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Weeks SC, Marcus V, and Crosser BR
- Abstract
The observation that offspring produced by the mating of close relatives are often less fit than those produced by matings between unrelated individuals (i.e., inbreeding depression) has commonly been explained in terms of the increased probability of expressing deleterious recessive alleles among inbred offspring (the partial dominance model). This model predicts that inbreeding depression should be limited in regularly inbreeding populations because the deleterious alleles that cause inbreeding depression (i.e., the genetic load) should be purged by regularly exposing these alleles to natural selection. We indirectly test the partial dominance model using four highly inbred populations of an androdioecious crustacean, the clam shrimp Eulimnadia texana. These shrimp are comprised of males and hermaphrodites, the latter capable of either self-fertilizing or mating with a male (i.e., outcrossing between hermaphrodites is impossible). Hermaphrodites are further subdivided into monogenics (produced via self-fertilization) and amphigenics (produced via self-fertilization or outcrossing). Electrophoretic evidence suggests significant differences in heterozygosity among populations, but that selfing rates were not statistically different (average s = 0.67). Additional electrophoretic analyses reveal that three previously described sex-linked loci (Fum, Idh-1, and Idh-2) are all tightly linked to each other, with crossing over on the order of 1% per generation. Although selfing rates are clearly high, we present evidence that early inbreeding depression (hatching rates, juvenile survival, and age at sexual maturity) exists in all four populations. For all of these factors, inbreeding depression was inferred by the positive correlation of multilocus heterozygosity and fitness. Cumulative inbreeding depression (8) is between 0.41 and 0.47 across all populations, which appears to be too low to limit the effects of purging via identity disequilibrium. Instead, we suggest that the maintenance of inbreeding depression in these populations is due to the observed linkage group, which we suggest contains a large number of genes including many related to fitness. Segregation of such a large linkage group would explain our observations of the predominance of amphigenic hermaphrodites in our field samples and of survival differences between monogenics and amphigenics within selfed clutches. We propose that a modified form of the overdominance model for inbreeding depression operating at the level of linkage groups maintains the observed levels of inbreeding depression in these populations even in the face of high rates of selfing., (© 1999 The Society for the Study of Evolution.)
- Published
- 1999
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17. QUANTITATIVE GENETIC AND OPTIMALITY ANALYSES OF LIFE-HISTORY PLASTICITY IN THE EASTERN MOSQUITOFISH, GAMBUSIA HOLBROOKI.
- Author
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Weeks SC and Meffe GK
- Published
- 1996
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18. Lack of IL-2 cytokine expression despite Il-2 messenger RNA transcription in tumor-infiltrating lymphocytes in primary human breast carcinoma: selective expression of early activation markers.
- Author
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Coventry BJ, Weeks SC, Heckford SE, Sykes PJ, Bradley J, and Skinner JM
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- Breast Neoplasms genetics, Carcinoma genetics, Female, Humans, In Situ Hybridization, Interleukin-2 biosynthesis, Interleukin-2 genetics, Prospective Studies, Receptors, Interleukin-2 biosynthesis, Antigens, Differentiation, T-Lymphocyte biosynthesis, Breast Neoplasms immunology, Carcinoma immunology, Interleukin-2 deficiency, Lymphocytes, Tumor-Infiltrating immunology, RNA, Messenger metabolism, Transcription, Genetic immunology
- Abstract
Tumor-infiltrating lymphocytes (TIL) are found in most human infiltrating ductal breast carcinomas. In studies of other tumors, TIL were capable of activation by IL-2, both in vitro and in vivo, to produce selective tumor cytolysis. Specific TIL-mediated tumor cytolysis in human breast tumors has recently been reported. The large numbers of TIL within human breast cancers imply that an immune response is occurring, since many of these cells express HLA class II as a late activation marker. However, the degree of early activation of the native TIL in breast tumors has not been fully investigated. Early activation markers CD69, CD43, and CD38 together with the IL-2R (CD25) and IL-2 cytokine were examined using mAbs and tissue section immunohistology. In situ hybridization was used to detect IL-2 mRNA (IL-2 mRNA) in parallel with immunohistochemical localization of IL-2. The results revealed the expression of CD69, CD43, and CD38, but markedly low CD25 (IL-2R) and IL-2 protein expression by the TIL. This strongly indicates that the TIL are an activated population of T cells that shows a deficiency in IL-2 protein and IL-2R expression despite adequate levels of IL-2 mRNA. The mechanism for apparent inhibition of IL-2 production and IL-2R expression in the presence of IL-2 mRNA is currently unclear; however, this may explain the relative anergic state of native TIL.
- Published
- 1996
19. Evolutionary models of quantitative disease risk factors.
- Author
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Connor A, Weiss KM, and Weeks SC
- Subjects
- Adolescent, Adult, Age Factors, Aged, Alleles, Biological Evolution, Cholesterol blood, Chronic Disease, Coronary Disease blood, Coronary Disease physiopathology, Genotype, Humans, Infant, Newborn, Life Expectancy, Middle Aged, Mutation, Phenotype, Physical Fitness, Risk Factors, Coronary Disease genetics, Models, Genetic
- Abstract
Numerous mutations are now known that have significant effects on various phenotypes; many of these mutations are of interest because they influence quantitative risk factors for major diseases. Such diversity raises the question of how much genetic heterogeneity we should expect to find in the effects of alleles, that is, the size of the effects, the number of severe alleles, and their frequency in the population. Can evolutionary models suggest a general pattern? In this article we examine what is currently known about several basic aspects of the problem. These include the distribution of quantitative effects of new mutations on a phenotype, the distribution of allelic effects that would be found in a natural population, and the relationship between these effects and Darwinian fitness. We discuss these issues in light of various models that have been proposed and the existing relevant data. Then we consider how these points relate to the distribution of genetic effects on an important human trait, the cholesterol ratio, an important risk factor for coronary heart disease. The complexities of quantitative traits and inadequacies in the available data prevent definitive models that can directly connect the mutational effects, allelic effects, and fitness distributions from being developed, and we consider how sample limitations and the nonequilibrium of human populations caused by our demographic history make rigorous solutions difficult. However, based on what is currently known, we argue that for human quantitative chronic disease risk factors the nearly neutral models of allelic evolution at single loci probably apply reasonably well. In general, and although much is still speculative, the data available for such risk factors are consistent with these expectations and may enable us to predict many aspects of etiologic heterogeneity for human disease.
- Published
- 1993
20. Phenotypic plasticity of life-history traits in clonal and sexual fish (Poeciliopsis) at high and low densities.
- Author
-
Weeks SC
- Abstract
Models of resource allocation strategies predict an array of life-history responses of individuals living in resource-stressed versus non-stressed environments. I tested a number of these predictions using three fish strains (a sexual and two clonal strains) in high and low density treatments. To examine the plasticity of life-history traits in females raised in these two environments, I measured survival, growth, egg production, egg size, and proportion mature at 10 weeks of age. Survival was not affected by density treatment. However, both growth and overall egg production were lower in females from the high density treatments, and reproductive maturity was significantly delayed at the high density for all strains. Egg production per unit size was not affected by density in any strain, signifying that differences in the numbers of eggs produced was merely a reflection of the differences in size of fish in the two density treatments. Egg size was also unaffected by density in all strains. These results are related to models of resource allocation in stressful environments. There was a consistent pattern of increased reproductive investment in the sexual strain relative to the two clonal strains. The sexual strain matured earlier, produced more eggs per unit body weight, and had larger eggs than either clone at both densities. These results are interpreted by considering the predicted adaptive responses of these three strains to the long-term environmental differences in their natural habitats.
- Published
- 1993
- Full Text
- View/download PDF
21. The effects of recurrent clonal formation on clonal invasion patterns and sexual persistence: a Monte Carlo simulation of the frozen niche-variation model.
- Author
-
Weeks SC
- Abstract
The interaction of sexual and asexual organisms in a heterogeneous environment was explored using a Monte Carlo simulation. The model was designed to address sexual persistence and the pattern of clonal invasion in a species that periodically produces clonal mutants. The parameters of the model were the mutation rate of outcrossed sexuals to obligate asexuality, the number of progeny per parent, the within-genotype niche width, and the carrying capacity for nine separate resources. The inclusion of recurrent clonal invasion due to meiosis-disrupting mutations drove the sexual species extinct in temporally stable environments, at a rate dependent on the mutation frequency, sexual niche breadth, and the relative magnitude of the number of progeny per parent and the carrying capacity. In simulations with uniform resource distributions, clonal invasion was distinctly nonrandom. The pattern of clonal invasion was "centripetal'': mutant clones that captured or "froze" the rarely recombined (or marginal) sexual phenotypes were more successful initially than clones freezing frequently recombined (or central) sexual phenotypes. The long-term persistence of the sexuals was confined to simulations that included temporal resource fluctuations. In such instances, sexuals and asexuals coexisted in a mutation/extinction equilibrium, where asexuals were continually produced by mutation and lost by short-term random extinctions. Increased within-genotype niche width reduced the probability of clonal extinction and thus restricted the likelihood of sexual/clonal coexistence.
- Published
- 1993
- Full Text
- View/download PDF
22. The genetic mechanism of sex determination in the conchostracan shrimp Eulimnadia texana.
- Author
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Sassaman C and Weeks SC
- Abstract
We report the results of a laboratory pedigree analysis describing the unique sex-determining mechanism of the conchostracan shrimp, Eulimnadia texana. Natural populations of E. texana are mixtures of self-compatible hermaphrodites and males and represent one of the few known cases of androdioecy in animals. Hermaphrodites are of two types: amphigenic (producing both male and hermaphroditic offspring) and monogenic (producing only hermaphroditic offspring). We propose a simple genetic model to explain this polymorphism and show by genetic analysis that males, amphigenics, and monogenics can be interpreted as three alternative phenotypes of a one-locus system of sex determination. We discuss the implications of this novel system of sex determination for understanding the evolution of reproductive systems.
- Published
- 1993
- Full Text
- View/download PDF
23. Video image analysis of AgNOR distribution in the normal and adenomatous colorectum.
- Author
-
Weeks SC, Beroukas D, Jarvis LR, and Whitehead R
- Subjects
- Adenoma pathology, Colon pathology, Colorectal Neoplasms pathology, Humans, Image Processing, Computer-Assisted, Intestinal Mucosa ultrastructure, Rectum pathology, Silver Staining methods, Video Recording, Adenoma ultrastructure, Cell Nucleus ultrastructure, Colorectal Neoplasms ultrastructure, Intestine, Large ultrastructure, Nucleolus Organizer Region ultrastructure
- Abstract
The nucleolar organizer regions (AgNORs) have been studied by video image analysis in the normal colorectum and in adenomas arising there. Total AgNOR area was measured in conjunction with the total area of nuclei and expressed as a ratio. AgNORs are found to predominate in the proliferative regions of the normal mucosal crypt, and the ratio of AgNOR to nuclear area proved significantly greater in the normal colon than in the rectum and far greater in colorectal adenomas. Further, there is a significant difference between the ratio in tubular as opposed to villous patterns of adenomatous growth in the colon but not in the rectum. When classified according to their degree of dysplasia, adenomas in the rectum exhibit a significantly higher ratio of AgNOR to nuclear area as the degree of dysplasia increases in severity. This correlation is not shown in the colon.
- Published
- 1992
- Full Text
- View/download PDF
24. Competition in phenotypically variable and uniform populations of the tadpole shrimp Triops longicaudatus (Notostraca: Triopsidae).
- Author
-
Weeks SC and Sassaman C
- Abstract
Life-history parameters (growth, reproduction, and survival) were measured from one genetically heterogeneous and three homogeneous populations of tadpole shrimp (Triops longicaudatus) raised under three competitive levels: 5, 10, and 16 shrimp per 38-1 aquarium. Comparisons were made between the homogeneous populations (three monomorphic selfing lines) and a heterogeneous population (a mixture of the three lines) to test for increased productivity in genetically variable populations, a prediction of the tangled bank hypothesis for a short-term advantage to sexual reproduction. In most comparisons, the mixture of inbred lines performed better than expected from their individual performances in pure cultures but did not outperform the best performing line in any comparison. Decomposition of the mixed culture's performance into performances of the component inbred lines showed that not all lines experienced release from competition in the mixed culture. No genotype X environment interaction was found for any of the three fitness correlates, indicating that all three lines performed similarly under the three competitive conditions. These results provide little support for the tangled bank hypothesis and suggest that the levels of heterogeneity necessary for detectable resource partitioning in these shrimp may involve factors not considered in this study.
- Published
- 1990
- Full Text
- View/download PDF
25. Lung immunoglobulins in the sudden infant death syndrome.
- Author
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Forsyth KD, Weeks SC, Koh L, Skinner J, and Bradley J
- Subjects
- Bronchoalveolar Lavage Fluid analysis, Humans, Infant, Infant, Newborn, Lung metabolism, Immunoglobulin A analysis, Immunoglobulin G analysis, Immunoglobulin M analysis, Lung immunology, Sudden Infant Death metabolism
- Abstract
The incidence of the sudden infant death syndrome parallels that of respiratory tract infections in the paediatric community. On the basis that the aetiology of the sudden infant death syndrome may lie in an unusual response to a trivial intercurrent respiratory infection a necropsy study was carried out investigating pulmonary immunoglobulins in 16 victims of the syndrome and a series of infants (controls) who had died of non-pulmonary causes. Compared with the controls victims of the sudden infant death syndrome had grossly raised concentrations of IgG, IgM, and to a less extent IgA in lung lavage samples. In addition, pulmonary interstitial and terminal airway cells expressing these immunoglobulins were identified far more often in victims than controls. The study failed to determine whether the increased immunoglobulin concentrations were a consequence of an unusual response to a trivial infection or an expression of otherwise altered immunological control in the respiratory tract. Epidemiological evidence and the findings of this study suggest that the respiratory tract is the prime target organ in the sudden infant death syndrome.
- Published
- 1989
- Full Text
- View/download PDF
26. Morphometric analysis of nuclear features, ploidy status, and staging in rectal carcinoma.
- Author
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Carter CD, Weeks SC, Jarvis LR, and Whitehead R
- Subjects
- Adenocarcinoma secondary, Adenocarcinoma ultrastructure, DNA, Neoplasm analysis, Humans, Lymphatic Metastasis, Neoplasm Staging, Prognosis, Rectal Neoplasms ultrastructure, Adenocarcinoma pathology, Cell Nucleus pathology, Ploidies, Rectal Neoplasms pathology
- Abstract
Recently, several flow cytometric studies have shown that the nuclear DNA content in colorectal carcinoma gives prognostic information which is independent of that provided by the histological characteristics of the tumour. In this study the nuclear DNA content and nuclear morphology of 39 cases of surgically resected rectal adenocarcinoma were measured in Feulgen-stained histological sections by video image analysis and 97 per cent were aneuploid. Dukes' stage correlated better with the morphometric data than did other classification systems. The extent of local spread and the growth pattern at the invasive margin of the tumour, which are of known prognostic importance, were significantly related to some nuclear features. Discriminant analysis of the nuclear morphometric data alone was highly successful in predicting these tumour characteristics. The results suggest that routine application of this technique to tumour biopsies may be of value in patient management since it provides stage-related information which cannot be obtained by conventional histopathological assessment.
- Published
- 1989
- Full Text
- View/download PDF
27. GENOTYPIC AND ENVIRONMENTAL COMPONENTS OF VARIATION IN GROWTH AND REPRODUCTION OF FISH HEMICLONES (POECILIOPSIS: POECILIIDAE).
- Author
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Wetherington JD, Weeks SC, Kotora KE, and Vrijenhoek RC
- Abstract
The frozen-niche-variation model was proposed to account for the coexistence of genetically related clones in naturally occurring unisexual populations. This model is based on two assumptions: 1) ecologically different clones have multiple independent origins from sexual ancestors; and 2) the population of sexual ancestors contains genetic variability for ecologically relevant traits. To test these assumptions, we produced 14 new "hemiclones" (nonrecombining haploid genotypes) of fish (Poeciliopsis: Poeciliidae). Our ability to synthesize many new hemiclones demonstrates the feasibility of multiple independent origins of nonrecombining genotypes. A substantial proportion (10-50%) of the phenotypic variation among hemiclones in size at birth, juvenile growth rate, and fecundity had a genetic basis. Thus, we conclude that multiple origins can give rise to an assemblage of genetically distinct hemiclones, each with a unique combination of life-history traits. Additionally, a comparative analysis of two natural hemiclones revealed that the synthetic strains represent a broad field of variation from which natural hemiclones can be selected., (© 1989 The Society for the Study of Evolution.)
- Published
- 1989
- Full Text
- View/download PDF
28. Immunocytologic characterization using monoclonal antibodies of lung lavage cell phenotype in infants who have died from sudden infant death syndrome.
- Author
-
Forsyth KD, Bradley J, Weeks SC, Smith MD, Skinner J, and Zola H
- Subjects
- Antibodies, Monoclonal, Antigens, Surface analysis, Child, Preschool, HLA-DQ Antigens analysis, Humans, Immunohistochemistry, Infant, Infant, Newborn, Interleukin-2 analysis, Lung immunology, Macrophages immunology, Phenotype, Bronchoalveolar Lavage Fluid immunology, Sudden Infant Death immunology
- Abstract
The phenotype of cells obtained from pulmonary lavage in infants who have died from sudden infant death syndrome were examined and compared with cells from control subjects. The only striking difference between the groups was a lack of reactivity of lavage cells with antibody of the CD14A cluster in the sudden infant death syndrome subjects, while antibodies of the CD14B cluster reacted strongly with cells from both the sudden infant death syndrome group and controls. Major histocompatibility complex class II antigens were expressed on approximately 95% of lavage cells, with DQ expressed more frequently than DR or DP. The majority of the lavage cells was macrophages, yet they reacted with CD3 (OKT3) and CD8 (OKT8) antibodies. No interleukin 2 was found in the lavage fluid.
- Published
- 1988
- Full Text
- View/download PDF
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