344 results on '"Waters CM"'
Search Results
2. Meeting a primary care challenge in the United States: chronic illness care
- Author
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Waters, CM, Hirsch, JE, Janson, SL, Saxe, JM, Dennehy, PM, and Stringari-Murray, S
- Published
- 2007
3. Assessing resilience to underpin implementation of Land Degradation Neutrality: A case study in the rangelands of western New South Wales, Australia
- Author
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Cowie, AL, Waters, CM, Garland, F, Orgill, SE, Baumber, A, Cross, R, O'Connell, D, and Metternicht, G
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Environmental Sciences - Abstract
© 2019 Elsevier Ltd Land degradation through loss of ground cover, wind erosion and woody scrub encroachment affects rangelands globally, threatening the resilience of communities and ecosystems. Climate change is anticipated to exacerbate land degradation in the rangelands, through increased incidence of drought. In the semi-arid rangelands of Australia, land managers have limited capacity to manage land degradation. Recent Australian climate policy initiatives could provide opportunities to improve land management, and increase resilience of rangeland pastoral systems. The Australian government's Emissions Reduction Fund enables landholders to obtain carbon credits for sequestering carbon in vegetation and soil. In western New South Wales (NSW), landholders have received funding for avoiding clearing or allowing the regrowth of native vegetation. These carbon farming projects could provide financial resources for landholders to manage drivers of land degradation and thus contribute to achieving “land degradation neutrality” (LDN). However, the impacts of carbon farming, particularly at regional level, are highly uncertain. The conceptual framework for LDN proposes that planning for LDN should be underpinned by assessment of resilience of the current and alternative lands use, using tools such as the Resilience Adaptation Pathways and Transformation Approach (RAPTA). RAPTA is a framework developed to guide the application of resilience concepts in management of social-ecological systems. It encourages a systems approach to identify critical linkages in the system, that become the focus of assessment of the system's resilience, and development of management plans to enhance resilience, and facilitate transformation where required. We present a case study of the application of RAPTA to support assessment of the resilience of current management and alternative land use strategies involving carbon farming. RAPTA facilitated a holistic assessment of social, biophysical and economic impacts of carbon farming in western NSW, that improved understanding of the opportunities, trade-offs, synergies and risks. RAPTA was found to be an effective tool to support LDN planning. Constraints to application of RAPTA include gaps in knowledge of thresholds, and resource requirements to enable effective stakeholder engagement, to inform integrated landscape management.
- Published
- 2019
4. Risks to carbon dynamics in semi-arid woodlands of eastern Australia under current and future climates
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Nolan, RH, Sinclair, J, Waters, CM, Mitchell, PJ, Eldridge, DJ, Paul, KI, Roxburgh, S, Butler, DW, and Ramp, D
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Climate Change ,Australia ,Bayes Theorem ,Forests ,Environmental Sciences ,Carbon - Abstract
© 2019 Elsevier Ltd Extreme disturbance events, such as wildfire and drought, have large impacts on carbon storage and sequestration of forests and woodlands globally. Here, we present a modelling approach that assesses the relative impact of disturbances on carbon storage and sequestration, and how this will alter under climate change. Our case study is semi-arid Australia where large areas of land are managed to offset over 122 million tonnes of anthropogenic carbon emissions over a 100-year period. These carbon offsets include mature vegetation that has been protected from clearing and regenerating vegetation on degraded agricultural land. We use a Bayesian Network model to combine multiple probabilistic models of the risk posed by fire, drought, grazing and recruitment failure to carbon dynamics. The model is parameterised from a review of relevant literature and additional quantitative analyses presented here. We found that the risk of vegetation becoming a net source of carbon due to a mortality event, or failing to realise maximum sequestration potential, through recruitment failure in regenerating vegetation, was primarily a function of rainfall in this semi-arid environment. However, the relative size of an emissions event varied across vegetation communities depending on plant attributes, specifically resprouting capacity. Modelled climate change effects were variable, depending on the climate change projection used. Under ‘best-case’ or ‘most-likely’ climate scenarios for 2050, similar or increased projections of mean annual precipitation, associated with a build-up of fuel, were expected to drive an increase in fire activity (a 40–160% increase), but a decrease in drought (a 20–35% decrease). Under a ‘worst-case’ climate scenario, fire activity was expected to decline (a 37% decrease), but drought conditions remain similar (a 5% decrease). These projected changes to the frequency of drought and fire increase the risk that vegetation used for carbon offsetting will fail to provide anticipated amounts of carbon abatement over their lifetime.
- Published
- 2019
5. Surgical management of invasive pulmonary aspergillosis in immunocompromised patients
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K Wong, Waters Cm, and Walesby Rk
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Adult ,Male ,Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Adolescent ,Lymphoma ,medicine.medical_treatment ,Aspergillosis ,Immunocompromised Host ,Postoperative Complications ,medicine ,Humans ,skin and connective tissue diseases ,Mycosis ,Chemotherapy ,Leukemia ,Lung ,Lung Diseases, Fungal ,business.industry ,Incidence (epidemiology) ,Immunosuppression ,General Medicine ,Middle Aged ,medicine.disease ,Surgery ,Radiography ,medicine.anatomical_structure ,Female ,Cardiology and Cardiovascular Medicine ,business - Abstract
The treatment of haematological malignancies with intensive chemotherapy and bone marrow transplantation results in prolonged periods of immunosuppression. This is associated with an increased incidence of invasive pulmonary aspergillosis (IPA) with reported mortalities of 67-83%. The mainstay of treatment is medical therapy, surgery being reserved for patients with haemoptysis. Resection of focal sites of infection has not been routinely considered in view of the high morbidity and mortality reported from the surgery of aspergillomas in past series. After the death of two neutropenic patients from massive haemoptysis following IPA in 1986, we have resected localised pulmonary aspergillus lesions in 16 patients following IPA. Five patients had haemoptysis. The most common procedure performed was a lobectomy. All patients were granulocytopenic and excessive post-operative bleeding occurred in three patients, one of whom required a re-thoracotomy as a result. There was one post-operative death due to cytomegalovirus pneumonia. Surgery was otherwise uneventful. There were no recurrent pulmonary aspergillus infections on follow-up and three patients proceeded to bone marrow transplantation. The success of surgical resection encourages an aggressive policy in the management of IPA to prevent life-threatening haemoptysis and to allow patients to proceed with further chemotherapy and bone marrow transplantation.
- Published
- 1992
6. Alveolar Type II Cell Responses to Stretch + Wounding In Vitro: A Study of Morphometry and Cell Proliferation.
- Author
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Crosby, LM, primary, Desai, LP, additional, Tague, L, additional, Zhang, Z, additional, Luellen, C, additional, Sinclair, SE, additional, and Waters, CM, additional
- Published
- 2009
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7. Steady-state pleural fluid flow and pressure and the effects of lung buoyancy
- Author
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Haber, R, Grotberg, J, Glucksberg, M, Miserocchi, G, Venturoli, D, Del Fabbro, M, Waters, C, Grotberg, JB, Glucksberg, MR, Waters, CM, Haber, R, Grotberg, J, Glucksberg, M, Miserocchi, G, Venturoli, D, Del Fabbro, M, Waters, C, Grotberg, JB, Glucksberg, MR, and Waters, CM
- Abstract
Both theoretical and experimental studies of pleural fluid dynamics and lung buoyancy during steady-state, apneic conditions are presented. The theory, shows that steady-state, top-to-bottom pleural-liquid flow, creates a pressure distribution that opposes lung buoyancy. These two forces may, balance, permitting dynamic lung floating, but when they, do not, pleural-pleural contact is required. The animal experiments examine pleural-liquid pressure distributions in response to simulated reduced gravity, achieved by, lung inflation with perfluorocarbon liquid as compared to air The resulting decrease in lung buoyancy modifies the force balance in the pleural fluid, which is reflected in its vertical pressure gradient. The data and model show that the decrease in buoyancy with perfluorocarbon inflation causes the vertical pressure gradient to approach hydrostatic. In the microgravity analogue, the pleural pressures would be toward a more uniform distribution, consistent with ventilation studies during spaceflight. The pleural liquid turnover predicted by the model is computed and found to be comparable to experimental values from the literature. The model provides the flow field, which can be used to develop a full transport theory for molecular and cellular constituents that are found in pleural fluid.
- Published
- 2001
8. Changes in c-myc expression and the kinetics of dexamethasone-induced programmed cell death (apoptosis) in human lymphoid leukaemia cells
- Author
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Wood, AC, primary, Waters, CM, additional, Garner, A, additional, and Hickman, JA, additional
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- 1994
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9. 118. Changes in the levels of constitutively expressed but not stress-induced heat shock proteins during terminal differentiation of HL-60 human leukemia cells
- Author
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Beere, HM, primary, Morimoto, RI, additional, Waters, CM, additional, Parmar, R, additional, and Hickman, JA, additional
- Published
- 1992
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10. Increasing Community Capacity to Reduce Tobacco-Related Health Disparities in African American Communities.
- Author
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Jones PR, Waters CM, Oka RK, and McGhee EM
- Subjects
- *
BLACK people , *CHURCH buildings , *COMMUNITY health services , *GROUNDED theory , *HEALTH education , *INFORMATION services , *INTERVIEWING , *RESEARCH methodology , *SELF-efficacy , *SMOKING cessation , *SOUND recordings , *STRATEGIC planning , *QUALITATIVE research , *COMMUNITY support , *CULTURAL competence - Abstract
The purpose of this study was to understand the processes and interactions that African American tobacco control organizations use to engage African American communities in tobacco control efforts. The study used grounded theory methods to interpret participant's perspectives on tobacco control. The study sample consisted of African American tobacco control program directors from African American tobacco control organizations throughout the United States. Data collection involved 1 interview per participant using a semistructured interview at a location selected by the participant. Each interview lasted approximately 30-90 min. The results showed that organizations used specific strategies to involve African Americans in tobacco control. The tobacco control organizations built community capacity using 3 processes: developing relationships and partnerships, raising awareness, and creating collective power. Contextual, cultural processes, and historical references used by African American tobacco control organizations provide insight into how to engage African American communities in tobacco control efforts and achieve tobacco-related health parity. Public health professionals and nurses should be aware of these and other strategies that may increase the involvement of African American communities in tobacco control. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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11. Current guidelines and best practice evidence for intensified/enhanced breast cancer screening in women with BRCA mutations.
- Author
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Waters CM, Hoover AC, McClain LC, Moore TT, Rogers CT, and Thornton K
- Abstract
Breast cancer is the second leading cause of cancer deaths in women with a hereditary predisposition. Early detection of this cancer improves treatment outcomes. Based on best practice evidence, advanced practice nurses must be knowledgeable of the most accurate screening tools for diagnosing breast cancer. This article presents the current guidelines and the best practice evidence that supports the addition of MRI as a screening tool for women with BRCA mutations. Recommendations for clinical practice are also presented. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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12. Excitotoxic neurotoxicity in an in vitro brain slice model
- Author
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Mitchell Ij, Waters Cm, Stephen M. Laidlaw, and Clapp I
- Subjects
N-Methylaspartate ,business.industry ,Neurotoxicity ,Brain ,Apoptosis ,In Vitro Techniques ,medicine.disease ,Receptors, N-Methyl-D-Aspartate ,Biochemistry ,In vitro ,Disease Models, Animal ,Mice ,Necrosis ,Slice preparation ,Excitatory Amino Acid Agonists ,Animals ,Medicine ,Ketamine ,business ,Excitatory Amino Acid Antagonists ,Neuroscience - Published
- 1995
13. Change in perceived psychosocial status following a 12-week Tai Chi exercise programme.
- Author
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Taylor-Piliae RE, Haskell WL, Waters CM, and Froelicher ES
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TAI chi ,CARDIOVASCULAR diseases ,DISEASE risk factors ,CHINESE people - Published
- 2006
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14. Parental influence on models of primary prevention of cardiovascular disease in children.
- Author
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Norton DE, Froelicher ES, Waters CM, and Carrieri-Kohlman V
- Abstract
BACKGROUND: Lifestyle behaviors such as overeating and physical inactivity contribute significantly to CVD, the leading cause of morbidity and mortality among adults globally. CVD risk factors that begin in children often track into adulthood. Parents are believed to influence the health behaviors of their children. OBJECTIVE: To review the literature on parental influence on children's health beliefs and behaviors, particularly eating and exercise behaviors as indicators of CV health, school-based CVD risk reduction programs, and racial/ethnic, gender and socioeconomic considerations for models of primary prevention of CVD in children. METHODS: Seventeen studies that included parents as either a source of information, change agent or participant in a CVD risk reduction intervention were identified searching the Medline, CINAHL and PsycINFO databases from 1980 through 2002. RESULTS: Children's lifestyle health beliefs and behaviors are significantly influenced by positive parental modeling and involvement in exercise and healthy eating; parental influence on children's behavior lasts beyond adolescence; parents are effective teachers of health habits at home when prompted by health educators; and parental influences vary by ethnicity/race, socioeconomics and gender. CONCLUSIONS: A broader base of knowledge that is socioculturally sensitive must be developed about what parents and children believe is healthy, how parents model beliefs and behaviors for their children, and how to build self-efficacy for positive health behaviors. [ABSTRACT FROM AUTHOR]
- Published
- 2003
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15. End-of-life care directives among African Americans: lessons learned -- a need for community-centered discussion and education.
- Author
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Waters CM
- Abstract
African Americans appear to be less likely to know about advance directives and, even if known, to complete them. This small, exploratory study used a community-centered educational group discussion to assess African Americans' knowledge, attitudes, and utilization of end-of-life care directives before the occurrence of a health crisis. McNemar and paired t tests were computed to detect immediate changes in participants' initial and final perceptions about advance directives before and after the group discussion. Findings indicated further education is needed to clarify the terms used for advance directives. African Americans rely on a family-centered approach to end-of-life decision making, especially in the absence of written advance directives. They are open to community forums to discuss end-of-life care choices if presented the opportunity. Culture plays an essential role in this issue. There is a need for community health nurses to develop community-based educational programs that are not a 'one-size-fits-all' approach. [ABSTRACT FROM AUTHOR]
- Published
- 2000
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16. Actual and ideal professional support for African American family members.
- Author
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Waters CM
- Abstract
The purposes of this study were to describe and compare, specifically, African American family members of critically ill adult's perceptions of the professional support they would like (ideal) to receive with the professional support they received (actual) from critical care nurses. The Professional Support Questionnaire for Critical Care Nurses Working With Family Members (PSQ) was administered by mail or telephone to 36 African American family members. The PSQ consists of three domains of support--information, comfort, and assurance. Paired t-test analyses indicated there were differences between the descriptions of professional nursing support expected (ideal) by family members and the professional support provided (actual) by critical care nurses. Although there was not an absence of professional nursing support, the degree and frequency to which African American family members wanted nurses to support them were not comparable to the support that nurses provided them. [ABSTRACT FROM AUTHOR]
- Published
- 1998
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17. Professional nursing support for culturally diverse family members of critically ill adults.
- Author
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Waters CM
- Abstract
OBJECTIVE: The purpose of this study was to compare African American, Hispanic, and White family members' perceptions of the professional support they expect from critical care nurses during a family member's critical illness. DESIGN: Nonexperimental, quantitative, between-group comparison. SETTING: ICU waiting room. POPULATION: Family members from three cultural groups were represented: African American, Hispanic, and White. Family member was defined as any non-institutionalized person who self-identified as being at least 21 years old and related by birth, marriage, adoption, or being a significant other/life partner to an adult relative in the ICU. A convenience sample of 90 family members was selected from the ICU waiting rooms of three suburban, private hospitals, and one public city hospital from 1992-3. INTERVENTIONS: The Professional Support Questionnaire for Critical Care Nurses Working with Family Members (PSQ) was used to examine cultural differences in professional nursing support expected. Family members were asked to identify interventions provided specifically by critical care nurses that would be supportive to them. Nurse managers notified staff the family members would be interviewed in the waiting rooms during visiting hours. The PSQ was administered face-to-face in the same manner to all participants. MAIN OUTCOME MEASURE(S): The types of professional nursing support most preferred by a majority of the family members were consistent across cultural groups. An exception were the following two items, which had mean scores that placed them among the five highest for Hispanic family members: 'providing an interpreter for non-English speaking family members' and 'preparing me in advance for my family member's transfer from the ICU to the floor.' Post hoc comparison showed significant differences between African American and White family members on the following items: 'reassuring me that my family member is stable enough that I can leave the waiting area and/or hospital for a while', 'telling me about chaplain services', 'visiting the waiting room at least once a shift to check out the concerns of family members', and 'being concerned about my comfort in the waiting room'. RESULTS/CONCLUSIONS: The recurrent 'theme' appears to be the ability of critical care nurses to keep family members connected, especially ethnic-minority family members. This sample might not be representative of the three cultural groups of family members who visit critically ill adult relatives. Findings of this study provide a beginning foundation for acknowledging and developing interventions that represent some culturally specific needs, as well as the universal concerns of family members who find themselves having to cope with the critical illness of a family member in an ICU setting. [CINAHL abstract] [ABSTRACT FROM AUTHOR]
- Published
- 1999
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18. Increased gastrin-releasing peptide (GRP) receptor expression in tumour cells confers sensitivity to [Arg6,D-Trp7,9,NmePhe8]-substance P (6-11)-induced growth inhibition
- Author
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Waters, CM, MacKinnon, AC, Cummings, J, Tufail-Hanif, U, Jodrell, D, Haslett, C, and Sethi, T
- Subjects
Receptors, Neuropeptide ,Lung Neoplasms ,Vasopressins ,Transplantation, Heterologous ,Mice, Nude ,Antineoplastic Agents ,DNA, Neoplasm ,Fibroblasts ,Substance P ,Bradykinin ,Peptide Fragments ,3. Good health ,Rats ,Receptors, Bombesin ,Mice ,Gastrin-Releasing Peptide ,Drug Resistance, Neoplasm ,Tumor Cells, Cultured ,Animals ,Humans ,Calcium ,Female ,Carcinoma, Small Cell ,Drug Screening Assays, Antitumor ,Cell Division - Abstract
[Arg(6),D-Trp(7,9),N(me)Phe(8)]-substance P (6-11) (SP-G) is a novel anticancer agent that has recently completed phase I clinical trials. SP-G inhibits mitogenic neuropeptide signal transduction and small cell lung cancer (SCLC) cell growth in vitro and in vivo. Using the SCLC cell line series GLC14, 16 and 19, derived from a single patient during the clinical course of their disease and the development of chemoresistance, it is shown that there was an increase in responsiveness to neuropeptides. This was paralleled by an increased sensitivity to SP-G. In a selected panel of tumour cell lines (SCLC, non-SCLC, ovarian, colorectal and pancreatic), the expression of the mitogenic neuropeptide receptors for vasopressin, gastrin-releasing peptide (GRP), bradykinin and gastrin was examined, and their sensitivity to SP-G tested in vitro and in vivo. The tumour cell lines displayed a range of sensitivity to SP-G (IC(50) values from 10.5 to 119 microM). The expression of the GRP receptor measured by reverse transcriptase-polymerase chain reaction, correlated significantly with growth inhibition by SP-G. Moreover, introduction of the GRP receptor into rat-1A fibroblasts markedly increased their sensitivity to SP-G. The measurement of receptor expression from biopsy samples by polymerase chain reaction could provide a suitable diagnostic test to predict efficacy to SP-G clinically. This strategy would be of potential benefit in neuropeptide receptor-expressing tumours in addition to SCLC, and in tumours that are relatively resistant to conventional chemotherapy.
19. Commentary on 'Community-based approaches to strengthen cultural competency in nursing education and practice'.
- Author
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Waters CM
- Published
- 2007
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20. A Vibrio cholerae Type IV restriction system targets glucosylated 5-hydroxymethylcytosine to protect against phage infection.
- Author
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Gomez JB and Waters CM
- Subjects
- Genomic Islands, Bacterial Proteins genetics, Bacterial Proteins metabolism, Vibrio cholerae virology, Vibrio cholerae genetics, 5-Methylcytosine metabolism, 5-Methylcytosine analogs & derivatives, Bacteriophages genetics, Bacteriophages physiology
- Abstract
A major challenge faced by Vibrio cholerae is constant predation by bacteriophage (phage) in aquatic reservoirs and during infection of human hosts. To overcome phage predation, V. cholerae has acquired and/or evolved a myriad of phage defense systems. Although several novel defense systems have been discovered, we hypothesized that more were encoded in V. cholerae given the low diversity of phages that have been isolated, which infect this species. Using a V. cholerae genomic library, we identified a Type IV restriction system consisting of two genes within a 16-kB region of the Vibrio pathogenicity island-2, which we name TgvA and TgvB ( T ype I-embedded g mrSD -like system of V PI-2). We show that both TgvA and TgvB are required for defense against T2, T4, and T6 by targeting glucosylated 5-hydroxymethylcytosine (5hmC). T2 or T4 phages that lose the glucose modifications are resistant to TgvAB defense but exhibit a significant evolutionary tradeoff, becoming susceptible to other Type IV restriction systems that target unglucosylated 5hmC. We also show that the Type I restriction-modification system that embeds the tgvAB genes protects against phage T3, secΦ18, secΦ27, and λ, suggesting that this region is a phage defense island. Our study uncovers a novel Type IV restriction system in V. cholerae , increasing our understanding of the evolution and ecology of V. cholerae, while highlighting the evolutionary interplay between restriction systems and phage genome modification.IMPORTANCEBacteria are constantly being predated by bacteriophage (phage). To counteract this predation, bacteria have evolved a myriad of defense systems. Some of these systems specifically digest infecting phage by recognizing unique base modifications present on the phage DNA. In this study, we discover a Type IV restriction system encoded in V. cholerae, which we name TgvAB, and demonstrate it recognizes and restricts phage that have 5-hydroxymethylcytosine glucosylated DNA. Moreover, the evolution of resistance to TgvAB render phage susceptible to other Type IV restriction systems, demonstrating a significant evolutionary tradeoff. These results enhance our understanding of the evolution of V. cholerae and more broadly how bacteria evade phage predation., Competing Interests: The authors declare no conflict of interest.
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- 2024
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21. Combinatorial control of Pseudomonas aeruginosa biofilm development by quorum-sensing and nutrient-sensing regulators.
- Author
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Chen G, Fanouraki G, Anandhi Rangarajan A, Winkelman BT, Winkelman JT, Waters CM, and Mukherjee S
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- Signal Transduction, Mutation, Nutrients metabolism, Repressor Proteins genetics, Repressor Proteins metabolism, Biofilms growth & development, Quorum Sensing genetics, Pseudomonas aeruginosa physiology, Pseudomonas aeruginosa genetics, Bacterial Proteins genetics, Bacterial Proteins metabolism, Gene Expression Regulation, Bacterial
- Abstract
The human pathogen Pseudomonas aeruginosa , a leading cause of hospital-acquired infections, inhabits and forms sessile antibiotic-resistant communities called biofilms in a wide range of biotic and abiotic environments. In this study, we examined how two global sensory signaling pathways-the RhlR quorum-sensing system and the CbrA/CbrB nutritional adaptation system-intersect to control biofilm development. Previous work has shown that individually these two systems repress biofilm formation. Here, we used biofilm analyses, RNA-seq, and reporter assays to explore the combined effect of information flow through RhlR and CbrA on biofilm development. We find that the Δ rhlR Δ cbrA double mutant exhibits a biofilm morphology and an associated transcriptional response distinct from wildtype and the parent Δ rhlR and Δ cbrA mutants indicating codominance of each signaling pathway. The Δ rhlR Δ cbrA mutant gains suppressor mutations that allow biofilm expansion; these mutations map to the crc gene resulting in loss of function of the carbon catabolite repression protein Crc. Furthermore, the combined absence of RhlR and CbrA leads to a drastic reduction in the abundance of the Crc antagonist small RNA CrcZ. Thus, CrcZ acts as the molecular convergence point for quorum- and nutrient-sensing cues. We find that in the absence of antagonism by CrcZ, Crc promotes the expression of biofilm matrix components-Pel exopolysaccharide, and CupB and CupC fimbriae. Therefore, this study uncovers a regulatory link between nutritional adaption and quorum sensing with potential implications for anti-biofilm targeting strategies.IMPORTANCEBacteria often form multicellular communities encased in an extracytoplasmic matrix called biofilms. Biofilm development is controlled by various environmental stimuli that are decoded and converted into appropriate cellular responses. To understand how information from two distinct stimuli is integrated, we used biofilm formation in the human pathogen Pseudomonas aeruginosa as a model and studied the intersection of two global sensory signaling pathways-quorum sensing and nutritional adaptation. Global transcriptomics on biofilm cells and reporter assays suggest parallel regulation of biofilms by each pathway that converges on the abundance of a small RNA antagonist of the carbon catabolite repression protein, Crc. We find a new role of Crc as it modulates the expression of biofilm matrix components in response to the environment. These results expand our understanding of the genetic regulatory strategies that allow P. aeruginosa to successfully develop biofilm communities., Competing Interests: The authors declare no conflict of interest.
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- 2024
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22. Negative feedback of cyclic di-GMP levels optimizes switching between sessile and motile lifestyles in Vibrio cholerae .
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Rangarajan AA, Schroeder JW, Hurto RL, Severin GB, Pell ME, Hsieh ML, Waters CM, and Freddolino L
- Abstract
The signaling molecule cyclic di-GMP (cdG) controls the switch between bacterial motility and biofilm production, and fluctuations in cellular levels of cdG have been implicated in Vibrio cholerae pathogenesis. Intracellular concentrations of cdG are controlled by the interplay of diguanylate cyclase (DGC) enzymes, which synthesize cdG to promote biofilms, and phosphodiesterase (PDE) enzymes, which hydrolyse cdG to drive motility. To track the complete regulatory logic of how V. cholerae responds to changing cdG levels, we followed a timecourse of overexpression of either the V. harveyi diguanylate cyclase QrgB or a variant of QrgB lacking catalytic activity (QrgB*). We find that QrgB increases cdG levels relative to QrgB* for 30 minutes after overexpression, but the effect of QrgB on cdG levels plateaus at 30 minutes, indicating tight adaptive control of cdG levels. In contrast, loss of VpsR, a master regulator activating biofilm formation upon binding to cdG, leads to higher baseline levels of cdG and continuously increasing cdG through 60 minutes after QrgB induction, revealing the existence of a negative feedback loop on cdG levels operating through VpsR. Through a combination of RNA polymerase ChIP-seq, RNA-seq, and genetic approaches, we show that transcription of a gene encoding a PDE, cdgC , is activated by VpsR at high cdG concentrations, mediating this negative feedback on cdG levels. We further identify a transcript encoded within, and antisense to, the cdgC open reading frame which we name sRNA negative regulator of CdgC (SnrC). RNA polymerase ChIP-seq and RNA-seq demonstrate SnrC to be expressed specifically under conditions of high cdG in the absence of VpsR. Ectopic SnrC expression increases cdG levels in a manner dependent on CdgC, demonstrating that its effect on cdG levels is likely through interference with CdgC production. Further, although cells lacking cdgC exhibit enhanced biofilm formation, these mutants are outcompeted by wild type V. cholerae in colonization assays that reward a combination of attachment, dispersal, and motility behaviors. These results underscore the importance of negative feedback regulation of cdG to maintain appropriate homeostatic levels for efficient transitioning between biofilm formation and motility, both of which are necessary over the course of the V. cholerae infection cycle.
- Published
- 2024
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23. Stem cells, cell therapies, and bioengineering in lung biology and diseases 2023.
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Hynds RE, Magin CM, Ikonomou L, Aschner Y, Beers MF, Burgess JK, Heise RL, Hume PS, Krasnodembskaya AD, Mei SHJ, Misharin AV, Park JA, Reynolds SD, Tschumperlin DJ, Tanneberger AE, Vaidyanathan S, Waters CM, Zettler PJ, Weiss DJ, and Ryan AL
- Subjects
- Humans, Animals, Cell- and Tissue-Based Therapy methods, Stem Cells cytology, Tissue Engineering methods, Regeneration physiology, Stem Cell Transplantation methods, Lung Diseases therapy, Lung Diseases pathology, Lung pathology, Bioengineering methods
- Abstract
Repair and regeneration of a diseased lung using stem cells or bioengineered tissues is an exciting therapeutic approach for a variety of lung diseases and critical illnesses. Over the past decade, increasing evidence from preclinical models suggests that mesenchymal stromal cells, which are not normally resident in the lung, can be used to modulate immune responses after injury, but there have been challenges in translating these promising findings to the clinic. In parallel, there has been a surge in bioengineering studies investigating the use of artificial and acellular lung matrices as scaffolds for three-dimensional lung or airway regeneration, with some recent attempts of transplantation in large animal models. The combination of these studies with those involving stem cells, induced pluripotent stem cell derivatives, and/or cell therapies is a promising and rapidly developing research area. These studies have been further paralleled by significant increases in our understanding of the molecular and cellular events by which endogenous lung stem and/or progenitor cells arise during lung development and participate in normal and pathological remodeling after lung injury. For the 2023 Stem Cells, Cell Therapies, and Bioengineering in Lung Biology and Diseases Conference, scientific symposia were chosen to reflect the most cutting-edge advances in these fields. Sessions focused on the integration of "omics" technologies with function, the influence of immune cells on regeneration, and the role of the extracellular matrix in regeneration. The necessity for basic science studies to enhance fundamental understanding of lung regeneration and to design innovative translational studies was reinforced throughout the conference.
- Published
- 2024
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24. National Beef Quality Audit-2022: in-plant assessments of quality and yield determining carcass characteristics of fed steers and heifers.
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Mayer TR, Borders SE, Schwartz TE, Gehring KB, Griffin DB, Kerth CR, Belk KE, Scanga JA, Nair MN, Pfeiffer MM, Mafi GG, Harr KM, Lawrence TE, Tennant TC, Lucherk LW, O'Quinn TG, Beyer ES, Bass PD, Garcia LG, Bohrer BM, Pempek JA, Garmyn AJ, Maddock RJ, Carr CC, Pringle TD, Scheffler TL, Scheffler JM, Stelzleni AM, Gonzalez JM, Underwood KR, Harsh BN, Waters CM, and Savell JW
- Abstract
The National Beef Quality Audit - 2022 serves as a benchmark of the current fed steer and heifer population of the U.S. beef industry and allows comparison to previous audits as a method of monitoring industry progress. In-plant cooler assessments and collections of beef carcass data took place from July 2021 to November 2022. During in-plant evaluations, 10% of 1-d production was surveyed for quality and yield indicating characteristics of fed beef carcasses ( n = 9,746 beef carcasses). Distributions of sex classes among sampled carcasses were steer (65.0%) and heifer (35.0%), whereas distributions of breed type were native (87.7%), dairy (11.3%), and Bos indicus (0.9%). Mean values were observed for USDA Yield Grades ( YG ; 3.3), USDA Quality Grade ( QG ; Choice
16 ), marbling score (Small98 ), ribeye area (91.0 cm2 ), adjusted fat thickness (1.49 cm), hot carcass weight (401.9 kg), and KPH (2.5%). Mean overall maturity was A66 , with a mean lean maturity of A56 and mean skeletal maturity of A72 . There were 28.1% of carcasses identified for use in a USDA-certified beef G-Schedule Program. Defects, such as dark cutting and blood splash, were observed at 1.8% and 0.5%, respectively. Distributions of USDA YG were YG 1 (8.2%), YG 2 (30.7%), YG 3 (40.2%), YG 4 (16.6%), and YG 5 (4.3%). USDA QGs were observed at 7.5% Prime, 69.2% Choice, 16.4% Select, and 6.8% other. The results of this study provide an updated look at the current grading trends of beef carcasses in the United States to drive progress in the fed beef industry., (© The Author(s) 2024. Published by Oxford University Press on behalf of the American Society of Animal Science.)- Published
- 2024
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25. Slings and arrows: sRNAs mediate intragenomic competition.
- Author
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Ferrell MJ and Waters CM
- Subjects
- RNA, Small Untranslated genetics, RNA, Small Untranslated metabolism, Genome, Bacterial, Bacteriophages genetics, Bacteriophages physiology, Gene Expression Regulation, Bacterial, RNA, Bacterial genetics, RNA, Bacterial metabolism, Vibrio cholerae genetics, Prophages genetics, Prophages physiology
- Abstract
Bacterial genomes are littered with exogenous: competing DNA elements. Here, Sprenger et al. demonstrate that the Vibrio cholerae prophage VP882 modulates host functions via production of regulatory sRNAs to promote phage development. Alternatively, host sRNAs inhibit the VP882 lytic phase by specifically regulating phage genes., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 Elsevier Inc. All rights reserved.)
- Published
- 2024
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26. Women in Facial Plastic and Reconstructive Surgery: The State of the Academy and Why It Matters.
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Loyo M, Krane NA, Waters CM, and Kontis TC
- Abstract
Facial plastic and reconstructive surgery has historically been a male-dominated field. It is critical to assess the current state of female representation within our Society to better gauge how we reflect the changing needs of our community and our patients. Although we have made headway in fostering a community ripe for progress, we must continue to create and promote equal opportunities, dissuade microaggressions, address burnout, and capitalize on the innate strengths of our female constituents. With the data presented in this study, we hope to further illuminate the benefits of women engagement in our Academy while recommending sustainable actions to create a culture of allyship.
- Published
- 2024
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27. Plasmid-free cheater cells commonly evolve during laboratory growth.
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Bedore AM and Waters CM
- Subjects
- Humans, Plasmids genetics, beta-Lactamases genetics, Penicillins pharmacology, Anti-Bacterial Agents pharmacology, Bacteria genetics
- Abstract
It has been nearly a century since the isolation and use of penicillin, heralding the discovery of a wide range of different antibiotics. In addition to clinical applications, such antibiotics have been essential laboratory tools, allowing for selection and maintenance of laboratory plasmids that encode cognate resistance genes. However, antibiotic resistance mechanisms can additionally function as public goods. For example, extracellular beta-lactamases produced by resistant cells that subsequently degrade penicillin and related antibiotics allow neighboring plasmid-free susceptible bacteria to survive antibiotic treatment. How such cooperative mechanisms impact selection of plasmids during experiments in laboratory conditions is poorly understood. Here, we show in multiple bacterial species that the use of plasmid-encoded beta-lactamases leads to significant curing of plasmids in surface-grown bacteria. Furthermore, such curing was also evident for aminoglycoside phosphotransferase and tetracycline antiporter resistance mechanisms. Alternatively, antibiotic selection in liquid growth led to more robust plasmid maintenance, although plasmid loss was still observed. The net outcome of such plasmid loss is the generation of a heterogenous population of plasmid-containing and plasmid-free cells, leading to experimental confounds that are not widely appreciated.IMPORTANCEPlasmids are routinely used in microbiology as readouts of cell biology or tools to manipulate cell function. Central to these studies is the assumption that all cells in an experiment contain the plasmid. Plasmid maintenance in a host cell typically depends on a plasmid-encoded antibiotic resistance marker, which provides a selective advantage when the plasmid-containing cell is grown in the presence of antibiotic. Here, we find that growth of plasmid-containing bacteria on a surface and to a lesser extent in liquid culture in the presence of three distinct antibiotic families leads to the evolution of a significant number of plasmid-free cells, which rely on the resistance mechanisms of the plasmid-containing cells. This process generates a heterogenous population of plasmid-free and plasmid-containing bacteria, an outcome which could confound further experimentation., Competing Interests: The authors declare no conflict of interest.
- Published
- 2024
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28. A Vibrio cholerae Type IV restriction system targets glucosylated 5-hydroxyl methyl cytosine to protect against phage infection.
- Author
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Gomez JB and Waters CM
- Abstract
A major challenge faced by Vibrio cholerae is constant predation by bacteriophage (phage) in aquatic reservoirs and during infection of human hosts. To overcome phage predation, V. cholerae has evolved a myriad of phage defense systems. Although several novel defense systems have been discovered, we hypothesized more were encoded in V. cholerae given the relative paucity of phage that have been isolated which infect this species. Using a V. cholerae genomic library, we identified a Type IV restriction system consisting of two genes within a 16kB region of the Vibrio pathogenicity island-2 that we name TgvA and TgvB ( T ype I-embedded g mrSD-like system of V PI-2). We show that both TgvA and TgvB are required for defense against T2, T4, and T6 by targeting glucosylated 5-hydroxymethylcytosine (5hmC). T2 or T4 phages that lose the glucose modification are resistant to TgvAB defense but exhibit a significant evolutionary tradeoff becoming susceptible to other Type IV restriction systems that target unglucosylated 5hmC. We show that additional phage defense genes are encoded in VPI-2 that protect against other phage like T3, secΦ18, secΦ27 and λ. Our study uncovers a novel Type IV restriction system in V. cholerae , increasing our understanding of the evolution and ecology of V. cholerae while highlighting the evolutionary interplay between restriction systems and phage genome modification., Competing Interests: Declarations of interest: none
- Published
- 2024
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29. Deployment of a Vibrio cholerae ordered transposon mutant library in a quorum-competent genetic background.
- Author
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Grant NA, Donkor GY, Sontz JT, Soto W, and Waters CM
- Abstract
Vibrio cholerae , the causative agent of cholera, has sparked seven pandemics in recent centuries, with the current one being the most prolonged. V. cholerae's pathogenesis hinges on its ability to switch between low and high cell density gene regulatory states, enabling transmission between host and the environment. Previously, a transposon mutant library for V. cholerae was created to support investigations aimed toward uncovering the genetic determinants of its pathogenesis. However, subsequent sequencing uncovered a mutation in the gene luxO of the parent strain, rendering mutants unable to exhibit high cell density behaviors. In this study, we used chitin-independent natural transformation to move transposon insertions from these low cell density mutants into a wildtype genomic background. Library transfer was aided by a novel gDNA extraction we developed using thymol, which also showed high lysis-specificity for Vibrio . The resulting Grant Library comprises 3,102 unique transposon mutants, covering 79.8% of V. cholerae's open reading frames. Whole genome sequencing of randomly selected mutants demonstrates 100% precision in transposon transfer to cognate genomic positions of the recipient strain. Notably, in no instance did the luxO mutation transfer into the wildtype background. Our research uncovered density-dependent epistasis in growth on inosine, an immunomodulatory metabolite secreted by gut bacteria that is implicated in enhancing gut barrier functions. Additionally, Grant Library mutants retain the plasmid that enables rapid, scarless genomic editing. In summary, the Grant Library reintroduces organismal relevant genetic contexts absent in the low cell density locked library equivalent.
- Published
- 2024
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30. National Beef Quality Audit-2022: Transportation, mobility, live cattle, and hide assessments to determine producer-related defects that affect animal welfare and the value of market cows and bulls at processing facilities.
- Author
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Borders SE, Schwartz TE, Mayer TR, Gehring KB, Griffin DB, Kerth CR, Belk KE, Edwards-Callaway L, Scanga JA, Nair MN, Morgan JB, Douglas JB, Pfeiffer MM, Mafi GG, Harr KM, Lawrence TE, Tennant TC, Lucherk LW, O'Quinn TG, Beyer ES, Bass PD, Garcia LG, Bohrer BM, Pempek JA, Garmyn AJ, Maddock RJ, Carr CC, Pringle TD, Scheffler TL, Scheffler JM, Stelzleni AM, Gonzalez JM, Underwood KR, Harsh BN, Waters CM, and Savell JW
- Abstract
The National Beef Quality Audit (NBQA)-2022 serves as a benchmark of the current market cow and bull sectors of the U.S. beef industry and allows comparison to previous audits as a method of monitoring industry progress. From September 2021 through May 2022, livestock trailers ( n = 125), live animals ( n = 5,430), and post-slaughter hide-on animals ( n = 6,674) were surveyed at 20 commercial beef processing facilities across the U.S. Cattle were transported in a variety of trailer types for an average distance of 490.6 km and a mean transport time of 6.3 h. During transit, cattle averaged 2.3 m
2 of trailer space per animal indicating sufficient space was provided according to industry guidelines. Of all trailers surveyed, 55.3% transported cattle from an auction barn to a processing facility. When surveyed, 63.6% of all truck drivers reported to be Beef Quality Assurance certified. The majority (77.0%) of cattle were sound when evaluated for mobility. Mean body condition scores (9-point scale) for beef cows and bulls were 3.8 and 4.4, respectively, whereas mean body condition scores (5-point scale) for dairy cows and bulls were 2.3 and 2.6, respectively. Of the cattle surveyed, 45.1% had no visible live animal defects, and 37.9% had only a single defect. Of defects present in cows, 64.6% were attributed to an udder problem. Full udders were observed in 47.5% of all cows. Nearly all cattle were free of visible abscesses and knots (97.9% and 98.2%, respectively). No horns were observed in 89.4% of all cattle surveyed. Beef cattle were predominantly black-hided (68.9% and 67.4% of cows and bulls, respectively). Holstein was the predominant dairy animal observed and accounted for 85.7% of the cows and 98.0% of the bulls. Only 3.1% of all animals had no form of identification. Findings from the NBQA-2022 show improvements within the industry and identify areas that require continued education and research to improve market cow and bull welfare and beef quality., Competing Interests: There are no known conflicts of interest by any of the authors., (© The Author(s) 2024. Published by Oxford University Press on behalf of the American Society of Animal Science.)- Published
- 2024
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31. Public willingness, attitudes and related factors toward cardiopulmonary resuscitation: A grounded theory study.
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Sun M, Waters CM, and Zhu A
- Subjects
- Humans, Grounded Theory, Health Knowledge, Attitudes, Practice, Surveys and Questionnaires, Qualitative Research, Cardiopulmonary Resuscitation education, Cardiopulmonary Resuscitation methods, Out-of-Hospital Cardiac Arrest therapy
- Abstract
Objectives: Despite receiving cardiopulmonary resuscitation (CPR) training, over 50% of bystanders were unable to actually perform CPR. Understanding public willingness and attitudes toward bystander CPR is crucial in explaining whether people initiate CPR. This study aimed to develop a theoretical understanding of factors that influence the public's willingness and attitudes to perform CPR., Design: This was a qualitative study using the grounded theory method., Methods: The data were collected from semi-structured interviews with 28 participants between August 2022 and November 2022. Purposive sampling and theoretical sampling were used to recruit participants. Interviews were recorded and transcribed. Data were analyzed using open, axial, and selective coding., Results: Nine categories and 24 subcategories were summarized from four aspects: willingness, attitudes, implementation, and training. Willingness included self-willingness, self-perception, and societal factors; attitudes covered personality traits, reactions to patients and environment; implementation comprised knowledge and skills, situational coping, and risk perception; training included CPR training accessibility and barriers to CPR training. A theoretical framework of public CPR willingness, attitudes, and their influencing factors was developed., Conclusion: The public's CPR willingness, attitudes, training, and implementation were interrelated and influential. The findings may have significant implications for the development of legislation and policy related to CPR popularization and training., (© 2023 Wiley Periodicals LLC.)
- Published
- 2024
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32. Two-pore potassium channel TREK-1 (K2P2.1) regulates NLRP3 inflammasome activity in macrophages.
- Author
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Immanuel CN, Teng B, Dong BE, Gordon EM, Luellen C, Lopez B, Harding J, Cormier SA, Fitzpatrick EA, Schwingshackl A, and Waters CM
- Subjects
- Animals, Mice, NLR Family, Pyrin Domain-Containing 3 Protein metabolism, Potassium metabolism, Lipopolysaccharides pharmacology, Lipopolysaccharides metabolism, Mice, Knockout, Macrophages metabolism, Caspase 1 metabolism, Adenosine Triphosphate pharmacology, Adenosine Triphosphate metabolism, Interleukin-1beta metabolism, Inflammasomes metabolism, Potassium Channels, Tandem Pore Domain genetics, Potassium Channels, Tandem Pore Domain metabolism, Tetrahydronaphthalenes, Tetrazoles
- Abstract
Because of the importance of potassium efflux in inflammasome activation, we investigated the role of the two-pore potassium (K2P) channel TREK-1 in macrophage inflammasome activity. Using primary alveolar macrophages (AMs) and bone marrow-derived macrophages (BMDMs) from wild-type (wt) and TREK-1
-/- mice, we measured responses to inflammasome priming [using lipopolysaccharide (LPS)] and activation (LPS + ATP). We measured IL-1β, caspase-1, and NLRP3 via ELISA and Western blot. A membrane-permeable potassium indicator was used to measure potassium efflux during ATP exposure, and a fluorescence-based assay was used to assess changes in membrane potential. Inflammasome activation induced by LPS + ATP increased IL-1β secretion in wt AMs, whereas activation was significantly reduced in TREK-1-/- AMs. Priming of BMDMs using LPS was not affected by either genetic deficiency or pharmacological inhibition of TREK-1 with Spadin. Cleavage of caspase-1 following LPS + ATP treatment was significantly reduced in TREK-1-/- BMDMs. The intracellular potassium concentration in LPS-primed wt BMDMs was significantly lower compared with TREK-1-/- BMDMs or wt BMDMs treated with Spadin. Conversely, activation of TREK-1 with BL1249 caused a decrease in intracellular potassium in wt BMDMs. Treatment of LPS-primed BMDMs with ATP caused a rapid reduction in intracellular potassium levels, with the largest change observed in TREK-1-/- BMDMs. Intracellular K+ changes were associated with changes in the plasma membrane potential (Em), as evidenced by a more depolarized Em in TREK-1-/- BMDMs compared with wt, and Em hyperpolarization upon TREK-1 channel opening with BL1249. These results suggest that TREK-1 is an important regulator of NLRP3 inflammasome activation in macrophages. NEW & NOTEWORTHY Because of the importance of potassium efflux in inflammasome activation, we investigated the role of the two-pore potassium (K2P) channel TREK-1 in macrophage inflammasome activity. Using primary alveolar macrophages and bone marrow-derived macrophages from wild-type and TREK-1-/- mice, we measured responses to inflammasome priming (using LPS) and activation (LPS + ATP). Our results suggest that TREK-1 is an important regulator of NLRP3 inflammasome activation in macrophages.- Published
- 2024
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33. pGpG-signaling regulates virulence and global transcriptomic targets in Erwinia amylovora .
- Author
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Kharadi RR, Hsueh BY, Waters CM, and Sundin GW
- Abstract
Cyclic-di-GMP (c-di-GMP) is a critical bacterial second messenger that enables the physiological phase transition in Erwinia amylovora , the phytopathogenic bacterium that causes fire blight disease. C-di-GMP generation is dependent on diguanylate cyclase enzymes while the degradation of c-di-GMP can occur through the action of phosphodiesterase (PDE) enzymes that contain an active EAL and/or a HD-GYP domain. The HD-GYP-type PDEs, which are absent in E. amylovora , can directly degrade c-di-GMP into two GMP molecules. PDEs that contain an active EAL domain, as found in all active PDEs in E. amylovora, degrade c-di-GMP into pGpG. The signaling function of pGpG is not fully understood in bacterial systems. A transcriptomic approach revealed that elevated levels of pGpG in E. amylovora impacted several genes involved in metabolic and regulatory functions including several type III secretion and extracellular appendage related genes. The heterologous overexpression of an EAL or HD-GYP-type PDE in different background E. amylovora strains with varying c-di-GMP levels revealed that in contrast to the generation of pGpG, the direct breakdown of c-di-GMP into GMP by the HD-GYP-type PDE led to an elevation in amylovoran production and biofilm formation despite a decrease in c-di-GMP levels. The breakdown of c-di-GMP into pGpG (as opposed to GTP) also led to a decrease in virulence in apple shoots. The expression of hrpS was significantly increased in response to the breakdown of c-di-GMP into pGpG. Further, our model suggests that a balance in the intracellular ratio of pGpG and c-di-GMP is essential for biofilm regulation in E. amylovora.
- Published
- 2024
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34. Targeting the Microbiome to Improve Gut Health and Breathing Function After Spinal Cord Injury.
- Author
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Wilson JN, Kigerl KA, Sunshine MD, Taylor CE, Speed SL, Rose BC, Calulot CM, Dong BE, Hawkinson TR, Clarke HA, Bachstetter AD, Waters CM, Sun RC, Popovich PG, and Alilain WJ
- Abstract
Spinal cord injury (SCI) is a devastating condition characterized by impaired motor and sensory function, as well as internal organ pathology and dysfunction. This internal organ dysfunction, particularly gastrointestinal (GI) complications, and neurogenic bowel, can reduce the quality of life of individuals with an SCI and potentially hinder their recovery. The gut microbiome impacts various central nervous system functions and has been linked to a number of health and disease states. An imbalance of the gut microbiome, i.e., gut dysbiosis, contributes to neurological disease and may influence recovery and repair processes after SCI. Here we examine the impact of high cervical SCI on the gut microbiome and find that transient gut dysbiosis with persistent gut pathology develops after SCI. Importantly, probiotic treatment improves gut health and respiratory motor function measured through whole-body plethysmography. Concurrent with these improvements was a systemic decrease in the cytokine tumor necrosis factor-alpha and an increase in neurite sprouting and regenerative potential of neurons. Collectively, these data reveal the gut microbiome as an important therapeutic target to improve visceral organ health and respiratory motor recovery after SCI., Research Highlights: Cervical spinal cord injury (SCI) causes transient gut dysbiosis and persistent gastrointestinal (GI) pathology.Treatment with probiotics after SCI leads to a healthier GI tract and improved respiratory motor recovery.Probiotic treatment decreases systemic tumor necrosis factor-alpha and increases the potential for sprouting and regeneration of neurons after SCI.The gut microbiome is a valid target to improve motor function and secondary visceral health after SCI.
- Published
- 2023
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35. Deficiency of Acute-Phase Serum Amyloid A Exacerbates Sepsis-Induced Mortality and Lung Injury in Mice.
- Author
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Ji A, Trumbauer AC, Noffsinger VP, Meredith LW, Dong B, Wang Q, Guo L, Li X, De Beer FC, Webb NR, Tannock LR, Starr ME, Waters CM, and Shridas P
- Subjects
- Animals, Mice, Serum Amyloid A Protein genetics, Lung pathology, Chemokines, Mice, Inbred C57BL, Disease Models, Animal, Lung Injury pathology, Sepsis pathology
- Abstract
Serum amyloid A (SAA) is a family of proteins, the plasma levels of which may increase >1000-fold in acute inflammatory states. We investigated the role of SAA in sepsis using mice deficient in all three acute-phase SAA isoforms (SAA-TKO). SAA deficiency significantly increased mortality rates in the three experimental sepsis mouse models: cecal ligation and puncture (CLP), cecal slurry (CS) injection, and lipopolysaccharide (LPS) treatments. SAA-TKO mice had exacerbated lung pathology compared to wild-type (WT) mice after CLP. A bulk RNA sequencing performed on lung tissues excised 24 h after CLP indicated significant enrichment in the expression of genes associated with chemokine production, chemokine and cytokine-mediated signaling, neutrophil chemotaxis, and neutrophil migration in SAA-TKO compared to WT mice. Consistently, myeloperoxidase activity and neutrophil counts were significantly increased in the lungs of septic SAA-TKO mice compared to WT mice. The in vitro treatment of HL-60, neutrophil-like cells, with SAA or SAA bound to a high-density lipoprotein (SAA-HDL), significantly decreased cellular transmigration through laminin-coated membranes compared to untreated cells. Thus, SAA potentially prevents neutrophil transmigration into injured lungs, thus reducing exacerbated tissue injury and mortality. In conclusion, we demonstrate for the first time that endogenous SAA plays a protective role in sepsis, including ameliorating lung injury.
- Published
- 2023
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36. Scratching the Surface of Individual Aerosol Particle Properties.
- Author
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Ault AP and Waters CM
- Published
- 2023
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37. Activation of a Vibrio cholerae CBASS anti-phage system by quorum sensing and folate depletion.
- Author
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Severin GB, Ramliden MS, Ford KC, Van Alst AJ, Sanath-Kumar R, Decker KA, Hsueh BY, Chen G, Yoon SH, Demey LM, O'Hara BJ, Rhoades CR, DiRita VJ, Ng W-L, and Waters CM
- Subjects
- Quorum Sensing physiology, Signal Transduction, Vibrio cholerae metabolism, Bacteriophages genetics
- Abstract
Importance: To counteract infection with phage, bacteria have evolved a myriad of molecular defense systems. Some of these systems initiate a process called abortive infection, in which the infected cell kills itself to prevent phage propagation. However, such systems must be inhibited in the absence of phage infection to prevent spurious death of the host. Here, we show that the cyclic oligonucleotide based anti-phage signaling system (CBASS) accomplishes this by sensing intracellular folate molecules and only expressing this system in a group. These results enhance our understanding of the evolution of the seventh Vibrio cholerae pandemic and more broadly how bacteria defend themselves against phage infection., Competing Interests: The authors declare no conflict of interest.
- Published
- 2023
- Full Text
- View/download PDF
38. Vibrio cholerae phage ICP3 requires O1 antigen for infection.
- Author
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Beckman DA and Waters CM
- Subjects
- Humans, Environment, Membrane Proteins, Vibrio cholerae genetics, Cholera, Bacteriophages genetics
- Abstract
In its natural aquatic environment, the bacterial pathogen Vibrio cholerae , the causative agent of the enteric disease cholera, is in constant competition with bacterial viruses known as phages. Following ICP3 infection, V. cholerae cultures that exhibited phage killing always recovered overnight, and clones isolated from these regrowth populations exhibited complete resistance to subsequent infections. Whole-genome sequencing of these resistant mutants revealed seven distinct mutations in genes encoding for enzymes involved in O1 antigen biosynthesis, demonstrating that the O1 antigen is a previously uncharacterized putative receptor of ICP3. To further elucidate the specificity of the resistance conferred by these mutations, they were challenged with the V. cholerae -specific phages ICP1 and ICP2. All seven O1 antigen mutants demonstrated pan-resistance to ICP1 but not ICP2, which utilizes the OmpU outer membrane protein as a receptor. We show that resistant mutations to ICP1 and ICP3 evolve at a significantly higher frequency than ICP2, but these mutations have a significant fitness tradeoff to V. cholerae and are unable to evolve in the presence of an antimicrobial that mimics host cell defensins., Competing Interests: The authors declare no conflict of interest.
- Published
- 2023
- Full Text
- View/download PDF
39. Replication cycle timing determines phage sensitivity to a cytidine deaminase toxin/antitoxin bacterial defense system.
- Author
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Hsueh BY, Ferrell MJ, Sanath-Kumar R, Bedore AM, and Waters CM
- Subjects
- Cytidine Deaminase, Bacteria, Nucleotides, RNA, Antitoxins, Bacteriophages genetics
- Abstract
Toxin-antitoxin (TA) systems are ubiquitous two-gene loci that bacteria use to regulate cellular processes such as phage defense. Here, we demonstrate the mechanism by which a novel type III TA system, avcID, is activated and confers resistance to phage infection. The toxin of the system (AvcD) is a deoxycytidylate deaminase that converts deoxycytidines (dC) to dexoyuridines (dU), while the RNA antitoxin (AvcI) inhibits AvcD activity. We have shown that AvcD deaminated dC nucleotides upon phage infection, but the molecular mechanism that activated AvcD was unknown. Here we show that the activation of AvcD arises from phage-induced inhibition of host transcription, leading to degradation of the labile AvcI. AvcD activation and nucleotide depletion not only decreases phage replication but also increases the formation of defective phage virions. Surprisingly, infection of phages such as T7 that are not inhibited by AvcID also lead to AvcI RNA antitoxin degradation and AvcD activation, suggesting that depletion of AvcI is not sufficient to confer protection against some phage. Rather, our results support that phage with a longer replication cycle like T5 are sensitive to AvcID-mediated protection while those with a shorter replication cycle like T7 are resistant., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2023 Hsueh et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2023
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40. Switching on cyclic di-GMP heterogeneity in Pseudomonas aeruginosa biofilms.
- Author
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Gomez JB and Waters CM
- Subjects
- Cyclic GMP, Pseudomonas aeruginosa genetics, Biofilms
- Published
- 2023
- Full Text
- View/download PDF
41. Plasmid-free cheater cells commonly evolve during laboratory growth.
- Author
-
Bedore AM and Waters CM
- Abstract
It has been nearly a century since the isolation and use of penicillin, heralding the discovery of a wide range of different antibiotics. In addition to clinical applications, such antibiotics have been essential laboratory tools, allowing for selection and maintenance of laboratory plasmids that encode cognate resistance genes. However, antibiotic resistance mechanisms can additionally function as public goods. For example, secretion of beta-lactamase from resistant cells, and subsequent degradation of nearby penicillin and related antibiotics, allows neighboring plasmid-free susceptible bacteria to survive antibiotic treatment. How such cooperative mechanisms impact selection of plasmids during experiments in laboratory conditions is poorly understood. Here, we show that the use of plasmid-encoded beta-lactamases leads to significant curing of plasmids in surface grown bacteria. Furthermore, such curing was also evident for aminoglycoside phosphotransferase and tetracycline antiporter resistance mechanisms. Alternatively, antibiotic selection in liquid growth led to more robust plasmid maintenance, although plasmid loss still occurred. The net outcome of such plasmid loss is the generation of a heterogenous population of plasmid-containing and plasmid-free cells, leading to experimental confounds that are not widely appreciated.
- Published
- 2023
- Full Text
- View/download PDF
42. Spatial metabolomics reveals glycogen as an actionable target for pulmonary fibrosis.
- Author
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Conroy LR, Clarke HA, Allison DB, Valenca SS, Sun Q, Hawkinson TR, Young LEA, Ferreira JE, Hammonds AV, Dunne JB, McDonald RJ, Absher KJ, Dong BE, Bruntz RC, Markussen KH, Juras JA, Alilain WJ, Liu J, Gentry MS, Angel PM, Waters CM, and Sun RC
- Subjects
- Mice, Animals, Humans, Glycogen, Metabolomics methods, Polysaccharides, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization methods, Pulmonary Fibrosis
- Abstract
Matrix assisted laser desorption/ionization imaging has greatly improved our understanding of spatial biology, however a robust bioinformatic pipeline for data analysis is lacking. Here, we demonstrate the application of high-dimensionality reduction/spatial clustering and histopathological annotation of matrix assisted laser desorption/ionization imaging datasets to assess tissue metabolic heterogeneity in human lung diseases. Using metabolic features identified from this pipeline, we hypothesize that metabolic channeling between glycogen and N-linked glycans is a critical metabolic process favoring pulmonary fibrosis progression. To test our hypothesis, we induced pulmonary fibrosis in two different mouse models with lysosomal glycogen utilization deficiency. Both mouse models displayed blunted N-linked glycan levels and nearly 90% reduction in endpoint fibrosis when compared to WT animals. Collectively, we provide conclusive evidence that lysosomal utilization of glycogen is required for pulmonary fibrosis progression. In summary, our study provides a roadmap to leverage spatial metabolomics to understand foundational biology in pulmonary diseases., (© 2023. The Author(s).)
- Published
- 2023
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43. Cervical spinal cord injury leads to injury and altered metabolism in the lungs.
- Author
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Huffman EE, Dong BE, Clarke HA, Young LEA, Gentry MS, Allison DB, Sun RC, Waters CM, and Alilain WJ
- Abstract
High-cervical spinal cord injury often disrupts respiratory motor pathways and disables breathing in the affected population. Moreover, cervically injured individuals are at risk for developing acute lung injury, which predicts substantial mortality rates. While the correlation between acute lung injury and spinal cord injury has been found in the clinical setting, the field lacks an animal model to interrogate the fundamental biology of this relationship. To begin to address this gap in knowledge, we performed an experimental cervical spinal cord injury (N = 18 ) alongside sham injury ( N = 3) and naïve animals ( N = 15) to assess lung injury in adult rats. We demonstrate that animals display some early signs of lung injury two weeks post-spinal cord injury. While no obvious histological signs of injury were observed, the spinal cord injured cohort displayed significant signs of metabolic dysregulation in multiple pathways that include amino acid metabolism, lipid metabolism, and N-linked glycosylation. Collectively, we establish for the first time a model of lung injury after spinal cord injury at an acute time point that can be used to monitor the progression of lung damage, as well as identify potential targets to ameliorate acute lung injury., Competing Interests: The authors report no competing interests., (© The Author(s) 2023. Published by Oxford University Press on behalf of the Guarantors of Brain.)
- Published
- 2023
- Full Text
- View/download PDF
44. Time to lysis determines phage sensitivity to a cytidine deaminase toxin/antitoxin bacterial defense system.
- Author
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Hsueh BY, Sanath-Kumar R, Bedore AM, and Waters CM
- Abstract
Toxin-antitoxin (TA) systems are ubiquitous two-gene loci that bacteria use to regulate cellular processes such as phage defense. Here, we demonstrate the mechanism by which a novel type III TA system, avcID , is activated and confers resistance to phage infection. The toxin of the system (AvcD) is a deoxycytidylate deaminase that converts deoxycytidines (dC) to dexoyuridines (dU), while the RNA antitoxin (AvcI) inhibits AvcD activity. We have shown that AvcD deaminated dC nucleotides upon phage infection, but the molecular mechanism that activated AvcD was unknown. Here we show that the activation of AvcD arises from phage-induced shutoff of host transcription, leading to degradation of the labile AvcI. AvcD activation and nucleotide depletion not only decreases phage replication but also increases the formation of defective phage virions. Surprisingly, infection of phages such as T7 that are not inhibited by AvcID also lead to AvcI RNA antitoxin degradation and AvcD activation, suggesting that depletion of AvcI is not sufficient to confer protection against some phage. Rather, our results support that phage with a longer lysis time like T5 are sensitive to AvcID-mediated protection while those with a shorter lysis time like T7 are resistant., Author’s Summary: Numerous diverse antiphage defense systems have been discovered in the past several years, but the mechanisms of how these systems are activated upon phage infection and why these systems protect against some phage but not others are poorly understood. The AvcID toxin-antitoxin phage defense system depletes nucleotides of the dC pool inside the host upon phage infection. We show that phage inhibition of host cell transcription activates this system by depleting the AvcI inhibitory sRNA, which inhibits production of phage and leads to the formation of defective virions. Additionally, we determined that phage lysis time is a key factor that influences sensitivity to AvcID with faster replicating phage exhibiting resistance to its effects. This study has implications for understanding the factors that influence bacterial host/phage dynamics.
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- 2023
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45. New Insights into Vibrio cholerae Biofilms from Molecular Biophysics to Microbial Ecology.
- Author
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Tai JB, Ferrell MJ, Yan J, and Waters CM
- Subjects
- Humans, Pandemics, Biofilms, Vibrio cholerae, Cholera epidemiology, Cholera microbiology, COVID-19
- Abstract
With the discovery that 48% of cholera infections in rural Bangladesh villages could be prevented by simple filtration of unpurified waters and the detection of Vibrio cholerae aggregates in stools from cholera patients it was realized V. cholerae biofilms had a central function in cholera pathogenesis. We are currently in the seventh cholera pandemic, caused by O1 serotypes of the El Tor biotypes strains, which initiated in 1961. It is estimated that V. cholerae annually causes millions of infections and over 100,000 deaths. Given the continued emergence of cholera in areas that lack access to clean water, such as Haiti after the 2010 earthquake or the ongoing Yemen civil war, increasing our understanding of cholera disease remains a worldwide public health priority. The surveillance and treatment of cholera is also affected as the world is impacted by the COVID-19 pandemic, raising significant concerns in Africa. In addition to the importance of biofilm formation in its life cycle, V. cholerae has become a key model system for understanding bacterial signal transduction networks that regulate biofilm formation and discovering fundamental principles about bacterial surface attachment and biofilm maturation. This chapter will highlight recent insights into V. cholerae biofilms including their structure, ecological role in environmental survival and infection, regulatory systems that control them, and biomechanical insights into the nature of V. cholerae biofilms., (© 2023. The Author(s), under exclusive license to Springer Nature Switzerland AG.)
- Published
- 2023
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46. Activation of TREK-1 ( K 2P 2.1 ) potassium channels protects against influenza A-induced lung injury.
- Author
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Zyrianova T, Lopez B, Zou K, Gu C, Pham D, Talapaneni S, Waters CM, Olcese R, and Schwingshackl A
- Subjects
- Animals, Humans, Mice, Chemokine CXCL10 metabolism, Interleukin-6 metabolism, Lung metabolism, Acute Lung Injury pathology, Influenza A virus, Influenza, Human pathology, Orthomyxoviridae Infections pathology, Potassium Channels, Tandem Pore Domain genetics, Potassium Channels, Tandem Pore Domain metabolism
- Abstract
Influenza-A virus (IAV) infects yearly an estimated one billion people worldwide, resulting in 300,000-650,000 deaths. Preventive vaccination programs and antiviral medications represent the mainstay of therapy, but with unacceptably high morbidity and mortality rates, new targeted therapeutic approaches are urgently needed. Since inflammatory processes are commonly associated with measurable changes in the cell membrane potential (Em), we investigated whether Em hyperpolarization via TREK-1 ( K
2P 2.1 ) K+ channel activation can protect against influenza-A virus (IAV)-induced pneumonia. We infected mice with IAV, which after 5 days caused 10-15% weight loss and a decrease in spontaneous activity, representing a clinically relevant infection. We then started a 3-day intratracheal treatment course with the novel TREK-1 activating compounds BL1249 or ML335. We confirmed TREK-1 activation with both compounds in untreated and IAV-infected primary human alveolar epithelial cells (HAECs) using high-throughput fluorescent imaging plate reader (FLIPR) assays. In mice, TREK-1 activation with BL1249 and ML335 counteracted IAV-induced histological lung injury and decrease in lung compliance and improved BAL fluid total protein levels, cell counts, and inflammatory IL-6, IP-10/CXCL-10, MIP-1α, and TNF-α levels. To determine whether these anti-inflammatory effects were mediated by activation of alveolar epithelial TREK-1 channels, we studied the effects of BL1249 and ML335 in IAV-infected HAEC, and found that TREK-1 activation decreased IAV-induced inflammatory IL-6, IP-10/CXCL10, and CCL-2 secretion. Dissection of TREK-1 downstream signaling pathways and construction of protein-protein interaction (PPI) networks revealed NF-κB1 and retinoic acid-inducible gene-1 (RIG-1) cascades as the most likely targets for TREK-1 protection. Therefore, TREK-1 activation may represent a novel therapeutic approach against IAV-induced lung injury.- Published
- 2023
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47. Anatomic Optical Coherence Tomography (aOCT) for Evaluation of the Internal Nasal Valve.
- Author
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Waters CM, Stepp WH, Conduff J, Balakrishnan S, Bu R, Oldenburg AL, Kimbell JS, Shockley WW, and Clark JM
- Subjects
- Humans, Hydrodynamics, Nasal Septum diagnostic imaging, Nasal Septum surgery, Nose surgery, Tomography, Optical Coherence methods, Tomography, X-Ray Computed methods, Nasal Obstruction surgery, Rhinoplasty methods
- Abstract
Objectives/hypothesis: To establish the utility of anatomic optical coherence tomography (aOCT) in evaluating internal nasal valve (INV)., Study Design: Anatomic specimen imaging study., Methods: Fresh-harvested human specimen heads were evaluated using both computed tomography (CT) imaging as well as using aOCT. Scans were performed at three time points: 1) After septoplasty for cartilage harvest, 2) after placement of butterfly graft (BFG), and 3) after placement of bilateral spreader grafts (SG). Imaging data were then converted into 3D models of the nasal airway. CT- and aOCT-generated models were compared by both static volumetric analysis and computational fluid dynamics (CFD) to predict nasal resistance and pressure., Results: Scans using aOCT showed comparable results to CT in terms of volumetric parameters both before and after intervention. Analysis of aOCT data by CFD demonstrated decrease in pressure after SG or BFG intervention. No statistically significant difference was observed when comparing CT- and aOCT-generated calculations of pressure or resistance., Conclusion: The INV can be imaged in a static fashion using aOCT technology. Advantages over traditional CT imaging include lack of exposure to radiation and rapid scan time. In addition, in-office use is possible as aOCT technology develops. Further investigation will be necessary to define the role of aOCT in the dynamic evaluation of this vital component of the nasal airway., Level of Evidence: 3 Laryngoscope, 132:2148-2156, 2022., (© 2021 The American Laryngological, Rhinological and Otological Society, Inc.)
- Published
- 2022
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48. ACE-Inhibitor or ARB-Induced Refractory Hypotension Treated With Vasopressin in Patients Undergoing General Anesthesia for Dentistry: Two Case Reports.
- Author
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Waters CM, Pelczar K, Adlesic EC, Schwartz PJ, and Giovannitti JA
- Subjects
- Anesthesia, General adverse effects, Angiotensin Receptor Antagonists adverse effects, Angiotensin-Converting Enzyme Inhibitors adverse effects, Dentistry, Humans, Postoperative Complications etiology, Retrospective Studies, Vasopressins adverse effects, Anesthetics, General adverse effects, Hypotension chemically induced, Hypotension drug therapy
- Abstract
Two case reports present the use of vasopressin for treating refractory hypotension associated with continued angiotensin-converting enzyme inhibitor (ACEI) or angiotensin receptor blocker (ARB) therapy prior to general anesthesia for oral surgery. Both patients were treated in an ambulatory dental surgery clinic and took either their ACEI or ARB medication for hypertension within 24 hours prior to undergoing an intubated general anesthetic. Persistent profound hypotension was encountered intraoperatively that was refractory to treatment with traditional methods. However, the ACEI- or ARB-induced refractory hypotension was successfully managed with the administration of vasopressin., (© 2022 by the American Dental Society of Anesthesiology.)
- Published
- 2022
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49. Phage defence by deaminase-mediated depletion of deoxynucleotides in bacteria.
- Author
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Hsueh BY, Severin GB, Elg CA, Waldron EJ, Kant A, Wessel AJ, Dover JA, Rhoades CR, Ridenhour BJ, Parent KN, Neiditch MB, Ravi J, Top EM, and Waters CM
- Subjects
- Cholera Toxin, Genomic Islands, Humans, Bacteriophages genetics, Cholera microbiology, Vibrio cholerae genetics
- Abstract
Vibrio cholerae biotype El Tor is perpetuating the longest cholera pandemic in recorded history. The genomic islands VSP-1 and VSP-2 distinguish El Tor from previous pandemic V. cholerae strains. Using a co-occurrence analysis of VSP genes in >200,000 bacterial genomes we built gene networks to infer biological functions encoded in these islands. This revealed that dncV, a component of the cyclic-oligonucleotide-based anti-phage signalling system (CBASS) anti-phage defence system, co-occurs with an uncharacterized gene vc0175 that we rename avcD for anti-viral cytodine deaminase. We show that AvcD is a deoxycytidylate deaminase and that its activity is post-translationally inhibited by a non-coding RNA named AvcI. AvcID and bacterial homologues protect bacterial populations against phage invasion by depleting free deoxycytidine nucleotides during infection, thereby decreasing phage replication. Homologues of avcD exist in all three domains of life, and bacterial AvcID defends against phage infection by combining traits of two eukaryotic innate viral immunity proteins, APOBEC and SAMHD1., (© 2022. The Author(s), under exclusive licence to Springer Nature Limited.)
- Published
- 2022
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50. Double take: A dual-functional Hypr GGDEF synthesizes both cyclic di-GMP and cyclic GMP-AMP to control predation in Bdellovibrio bacteriovorus.
- Author
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Rangarajan AA and Waters CM
- Subjects
- Antibiosis, Bacterial Proteins genetics, Bacterial Proteins metabolism, Cyclic GMP, Gene Expression Regulation, Bacterial, Nucleotides, Cyclic, Bdellovibrio metabolism, Bdellovibrio bacteriovorus genetics, Bdellovibrio bacteriovorus metabolism
- Abstract
Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2022
- Full Text
- View/download PDF
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