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2. About the Contributors

Author

Marston, John, d'Alpoim Guedes, Jade, and Warinner, Christina

Published
2014

3. Contents

Author

Marston, John, d'Alpoim Guedes, Jade, and Warinner, Christina

Published
2014

4. Index

Author

Marston, John, d'Alpoim Guedes, Jade, and Warinner, Christina

Published
2014

5. Figures

Author

Marston, John, d'Alpoim Guedes, Jade, and Warinner, Christina

Published
2014

6. References Cited

Author

Marston, John, d'Alpoim Guedes, Jade, and Warinner, Christina

Published
2014

7. Title Page, Copyright

Author

Marston, John, d'Alpoim Guedes, Jade, and Warinner, Christina

Published
2014

9. Preface

Author

Marston, John, d'Alpoim Guedes, Jade, and Warinner, Christina

Published
2014

15. Tables

Author

Marston, John, d'Alpoim Guedes, Jade, and Warinner, Christina

Published
2014

30. Part V: Interpretation

Author

Marston, John, d'Alpoim Guedes, Jade, and Warinner, Christina

Published
2014

34. Ancient Plasmodium genomes shed light on the history of human malaria

Author

Michel, Megan, Skourtanioti, Eirini, Pierini, Federica, Guevara, Evelyn K., Mötsch, Angela, Kocher, Arthur, Barquera, Rodrigo, Bianco, Raffaela A., Carlhoff, Selina, Coppola Bove, Lorenza, Freilich, Suzanne, Giffin, Karen, Hermes, Taylor, Hiß, Alina, Knolle, Florian, Nelson, Elizabeth A., Neumann, Gunnar U., Papac, Luka, Penske, Sandra, Rohrlach, Adam B., Salem, Nada, Semerau, Lena, Villalba-Mouco, Vanessa, Abadie, Isabelle, Aldenderfer, Mark, Beckett, Jessica F., Brown, Matthew, Campus, Franco G. R., Chenghwa, Tsang, Cruz Berrocal, María, Damašek, Ladislav, Duffett Carlson, Kellie Sara, Durand, Raphaël, Ernée, Michal, Fântăneanu, Cristinel, Frenzel, Hannah, García Atiénzar, Gabriel, Guillén, Sonia, Hsieh, Ellen, Karwowski, Maciej, Kelvin, David, Kelvin, Nikki, Khokhlov, Alexander, Kinaston, Rebecca L., Korolev, Arkadii, Krettek, Kim-Louise, Küßner, Mario, Lai, Luca, Look, Cory, Majander, Kerttu, Mandl, Kirsten, Mazzarello, Vittorio, McCormick, Michael, de Miguel Ibáñez, Patxuka, Murphy, Reg, Németh, Rita E., Nordqvist, Kerkko, Novotny, Friederike, Obenaus, Martin, Olmo-Enciso, Lauro, Onkamo, Päivi, Orschiedt, Jörg, Patrushev, Valerii, Peltola, Sanni, Romero, Alejandro, Rubino, Salvatore, Sajantila, Antti, Salazar-García, Domingo C., Serrano, Elena, Shaydullaev, Shapulat, Sias, Emanuela, Šlaus, Mario, Stančo, Ladislav, Swanston, Treena, Teschler-Nicola, Maria, Valentin, Frederique, Van de Vijver, Katrien, Varney, Tamara L., Vigil-Escalera Guirado, Alfonso, Waters, Christopher K., Weiss-Krejci, Estella, Winter, Eduard, Lamnidis, Thiseas C., Prüfer, Kay, Nägele, Kathrin, Spyrou, Maria, Schiffels, Stephan, Stockhammer, Philipp W., Haak, Wolfgang, Posth, Cosimo, Warinner, Christina, Bos, Kirsten I., Herbig, Alexander, and Krause, Johannes

Published
2024
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35. Ancient genomes reveal insights into ritual life at Chichén Itzá

Author

Barquera, Rodrigo, Del Castillo-Chávez, Oana, Nägele, Kathrin, Pérez-Ramallo, Patxi, Hernández-Zaragoza, Diana Iraíz, Szolek, András, Rohrlach, Adam Benjamin, Librado, Pablo, Childebayeva, Ainash, Bianco, Raffaela Angelina, Penman, Bridget S., Acuña-Alonzo, Victor, Lucas, Mary, Lara-Riegos, Julio César, Moo-Mezeta, María Ermila, Torres-Romero, Julio César, Roberts, Patrick, Kohlbacher, Oliver, Warinner, Christina, and Krause, Johannes

Published
2024
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37. The origins of saddles and riding technology in East Asia: discoveries from the Mongolian Altai

Author

Bayarsaikhan, Jamsranjav, Turbat, Tsagaan, Bayandelger, Chinbold, Tuvshinjargal, Tumurbaatar, Wang, Juan, Chechushkov, Igor, Uetsuki, Manabu, Isahaya, Naoto, Hudson, Mark, Shiraishi, Noriyuki, Li, Yue, Zhang, Chengrui, Eregzen, Gelegdorj, Caspari, Gino, Lopez-Calle, Paula, Conver, Joshua L., Tressieres, Gaetan, Chauvey, Lorelei, Birgel, Julie, Erdene-Ochir, Nasan-Ochir, Bemmann, Jan, Hodgins, Gregory, Richter, Kristine K., Orlando, Ludovic, Warinner, Christina, and Taylor, William Timothy Treal

Subjects
Anthropological research, Horsemanship, Saddlery -- Innovations, Anthropology/archeology/folklore
Abstract

Innovations in horse equipment during the early Middle Ages provided advantages to societies from the steppes, reshaping the social landscape of Eurasia. Comparatively little is known about the precise origin of these crucial advances, although the available evidence points to early adoption in East Asia. The authors present new archaeological discoveries from western and northern Mongolia, dating to the fourth and fifth centuries AD, including a wooden frame saddle with horse hide components from Urd Ulaan Uneet and an iron stirrup from Khukh Nuur. Together, these finds suggest that Mongolian groups were early adopters of stirrups and saddles, facilitating the expansion of nomadic hegemony across Eurasia and shaping the conduct of medieval mounted warfare. Keywords: Mongolia, Middle Ages, horse riding, stirrup, saddle, Introduction Across Eurasia, the development of sophisticated cavalry had tremendous consequences for ancient societies. Beginning with the domestication of the horse and the subsequent invention of the chariot in the [...]

Published
2024
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41. Ancient genomes from the Himalayas illuminate the genetic history of Tibetans and their Tibeto-Burman speaking neighbors

Author

Liu, Chi-Chun, Witonsky, David, Gosling, Anna, Lee, Ju Hyeon, Ringbauer, Harald, Hagan, Richard, Patel, Nisha, Stahl, Raphaela, Novembre, John, Aldenderfer, Mark, Warinner, Christina, Di Rienzo, Anna, and Jeong, Choongwon

Subjects
Human Genome, Genetics, Adaptation, Physiological, Altitude, Genome, History, Ancient, Humans, Nepal, Tibet
Abstract

Present-day Tibetans have adapted both genetically and culturally to the high altitude environment of the Tibetan Plateau, but fundamental questions about their origins remain unanswered. Recent archaeological and genetic research suggests the presence of an early population on the Plateau within the past 40 thousand years, followed by the arrival of subsequent groups within the past 10 thousand years. Here, we obtain new genome-wide data for 33 ancient individuals from high elevation sites on the southern fringe of the Tibetan Plateau in Nepal, who we show are most closely related to present-day Tibetans. They derive most of their ancestry from groups related to Late Neolithic populations at the northeastern edge of the Tibetan Plateau but also harbor a minor genetic component from a distinct and deep Paleolithic Eurasian ancestry. In contrast to their Tibetan neighbors, present-day non-Tibetan Tibeto-Burman speakers living at mid-elevations along the southern and eastern margins of the Plateau form a genetic cline that reflects a distinct genetic history. Finally, a comparison between ancient and present-day highlanders confirms ongoing positive selection of high altitude adaptive alleles.

Published
2022

42. Ethics of DNA research on human remains: five globally applicable guidelines

Author

Alpaslan-Roodenberg, Songül, Anthony, David, Babiker, Hiba, Bánffy, Eszter, Booth, Thomas, Capone, Patricia, Deshpande-Mukherjee, Arati, Eisenmann, Stefanie, Fehren-Schmitz, Lars, Frachetti, Michael, Fujita, Ricardo, Frieman, Catherine J, Fu, Qiaomei, Gibbon, Victoria, Haak, Wolfgang, Hajdinjak, Mateja, Hofmann, Kerstin P, Holguin, Brian, Inomata, Takeshi, Kanzawa-Kiriyama, Hideaki, Keegan, William, Kelso, Janet, Krause, Johannes, Kumaresan, Ganesan, Kusimba, Chapurukha, Kusimba, Sibel, Lalueza-Fox, Carles, Llamas, Bastien, MacEachern, Scott, Mallick, Swapan, Matsumura, Hirofumi, Morales-Arce, Ana Y, Matuzeviciute, Giedre Motuzaite, Mushrif-Tripathy, Veena, Nakatsuka, Nathan, Nores, Rodrigo, Ogola, Christine, Okumura, Mercedes, Patterson, Nick, Pinhasi, Ron, Prasad, Samayamantri PR, Prendergast, Mary E, Punzo, Jose Luis, Reich, David, Sawafuji, Rikai, Sawchuk, Elizabeth, Schiffels, Stephan, Sedig, Jakob, Shnaider, Svetlana, Sirak, Kendra, Skoglund, Pontus, Slon, Viviane, Snow, Meradeth, Soressi, Marie, Spriggs, Matthew, Stockhammer, Philipp W, Szécsényi-Nagy, Anna, Thangaraj, Kumarasamy, Tiesler, Vera, Tobler, Ray, Wang, Chuan-Chao, Warinner, Christina, Yasawardene, Surangi, and Zahir, Muhammad

Subjects
Human Genome, Genetics, Generic health relevance, American Indian or Alaska Native, Anthropology, Archaeology, Cadaver, Community-Institutional Relations, DNA, Ancient, Guidelines as Topic, Human Genetics, Humans, Indigenous Peoples, Internationality, Molecular Biology, Stakeholder Participation, Translations, General Science & Technology
Abstract

We are a group of archaeologists, anthropologists, curators and geneticists representing diverse global communities and 31 countries. All of us met in a virtual workshop dedicated to ethics in ancient DNA research held in November 2020. There was widespread agreement that globally applicable ethical guidelines are needed, but that recent recommendations grounded in discussion about research on human remains from North America are not always generalizable worldwide. Here we propose the following globally applicable guidelines, taking into consideration diverse contexts. These hold that: (1) researchers must ensure that all regulations were followed in the places where they work and from which the human remains derived; (2) researchers must prepare a detailed plan prior to beginning any study; (3) researchers must minimize damage to human remains; (4) researchers must ensure that data are made available following publication to allow critical re-examination of scientific findings; and (5) researchers must engage with other stakeholders from the beginning of a study and ensure respect and sensitivity to stakeholder perspectives. We commit to adhering to these guidelines and expect they will promote a high ethical standard in DNA research on human remains going forward.

Published
2021

43. The Potential of Dental Calculus as a Novel Source of Biological Isotopic Data

Author

Salazar-García, Domingo C., Warinner, Christina, Eerkens, Jelmer W., Henry, Amanda G., Eerkens, Jelmer, Series Editor, Çakırlar, Canan, Editorial Board Member, Iizuka, Fumie, Editorial Board Member, Seetah, Krish, Editorial Board Member, Sugranes, Nuria, Editorial Board Member, Tushingham, Shannon, Editorial Board Member, Wilson, Chris, Editorial Board Member, Beasley, Melanie M., editor, and Somerville, Andrew D., editor

Published
2023
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46. Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT

Author

Borry, Maxime, primary, Forsythe, Adrian, additional, Andrades Valtueña, Aida, additional, Hübner, Alexander, additional, Ibrahim, Anan, additional, Quagliariello, Andrea, additional, White, Anna E., additional, Kocher, Arthur, additional, Vågene‬, Åshild J., additional, Bartholdy, Bjørn Peare, additional, Spurīte, Diāna, additional, Ponce-Soto, Gabriel Yaxal, additional, Neumann, Gunnar, additional, Huang, I-Ting, additional, Light, Ian, additional, Velsko, Irina M., additional, Jackson, Iseult, additional, Frangenberg, Jasmin, additional, Serrano, Javier G., additional, Fumey, Julien, additional, Özdoğan, Kadir T., additional, Blevins, Kelly E., additional, Daly, Kevin G., additional, Lopopolo, Maria, additional, Moraitou, Markella, additional, Michel, Megan, additional, van Os, Meriam, additional, Bravo-Lopez, Miriam J., additional, Sarhan, Mohamed S., additional, Dagtas, Nihan D., additional, Oskolkov, Nikolay, additional, Smith, Olivia S., additional, Lebrasseur, Ophélie, additional, Rozwalak, Piotr, additional, Eisenhofer, Raphael, additional, Wasef, Sally, additional, Ramachandran, Shreya L., additional, Vanghi, Valentina, additional, Warinner, Christina, additional, and Fellows Yates, James A., additional

Published
2024
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47. Emergence and intensification of dairying in the Caucasus and Eurasian steppes

Author

Scott, Ashley, Reinhold, Sabine, Hermes, Taylor, Kalmykov, Alexey A., Belinskiy, Andrey, Buzhilova, Alexandra, Berezina, Natalia, Kantorovich, Anatoliy R., Maslov, Vladimir E., Guliyev, Farhad, Lyonnet, Bertille, Gasimov, Parviz, Jalilov, Bakhtiyar, Eminli, Jeyhun, Iskandarov, Emil, Hammer, Emily, Nugent, Selin E., Hagan, Richard, Majander, Kerttu, Onkamo, Päivi, Nordqvist, Kerkko, Shishlina, Natalia, Kaverzneva, Elena, Korolev, Arkadiy I., Khokhlov, Aleksandr A., Smolyaninov, Roman V., Sharapova, Svetlana V., Krause, Rüdiger, Karapetian, Marina, Stolarczyk, Eliza, Krause, Johannes, Hansen, Svend, Haak, Wolfgang, and Warinner, Christina

Published
2022
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48. "The dead shall be raised": Multidisciplinary analysis of human skeletons reveals complexity in 19th century immigrant socioeconomic history and identity in New Haven, Connecticut.

Author

Aronsen, Gary P, Fehren-Schmitz, Lars, Krigbaum, John, Kamenov, George D, Conlogue, Gerald J, Warinner, Christina, Ozga, Andrew T, Sankaranarayanan, Krithivasan, Griego, Anthony, DeLuca, Daniel W, Eckels, Howard T, Byczkiewicz, Romuald K, Grgurich, Tania, Pelletier, Natalie A, Brownlee, Sarah A, Marichal, Ana, Williamson, Kylie, Tonoike, Yukiko, and Bellantoni, Nicholas F

Subjects
Skeleton, Dental Calculus, Tooth, Humans, DNA, Mitochondrial, Pedigree, Anthropology, Archaeology, Socioeconomic Factors, History, 19th Century, Adolescent, Adult, Aged, Middle Aged, Child, Child, Preschool, Infant, Connecticut, Female, Male, Emigrants and Immigrants, Cemeteries, DNA, Mitochondrial, History, 19th Century, Preschool, General Science & Technology
Abstract

In July 2011, renovations to Yale-New Haven Hospital inadvertently exposed the cemetery of Christ Church, New Haven, Connecticut's first Catholic cemetery. While this cemetery was active between 1833 and 1851, both the church and its cemetery disappeared from public records, making the discovery serendipitous. Four relatively well-preserved adult skeletons were recovered with few artifacts. All four individuals show indicators of manual labor, health and disease stressors, and dental health issues. Two show indicators of trauma, with the possibility of judicial hanging in one individual. Musculoskeletal markings are consistent with physical stress, and two individuals have arthritic indicators of repetitive movement/specialized activities. Radiographic analyses show osteopenia, healed trauma, and other pathologies in several individuals. Dental calculus analysis did not identify any tuberculosis indicators, despite osteological markers. Isotopic analyses of teeth indicate that all four were likely recent immigrants to the Northeastern United States. Nuclear and mitochondrial DNA were recovered from three individuals, and these analyses identified ancestry, hair/eye color, and relatedness. Genetic and isotopic results upended our initial ancestry assessment based on burial context alone. These individuals provide biocultural evidence of New Haven's Industrial Revolution and the plasticity of ethnic and religious identity in the immigrant experience. Their recovery and the multifaceted analyses described here illuminate a previously undescribed part of the city's rich history. The collective expertise of biological, geochemical, archaeological, and historical researchers interprets socioeconomic and cultural identity better than any one could alone. Our combined efforts changed our initial assumptions of a poor urban Catholic cemetery's membership, and provide a template for future discoveries and analyses.

Published
2019

49. The evolution and changing ecology of the African hominid oral microbiome

Author

Yates, James A. Fellows, Velsko, Irina M., Aron, Franziska, Posth, Cosimo, Hofman, Courtney A., Austin, Rita M., Parker, Cody E., Mann, Allison E., Nägele, Kathrin, Arthur, Kathryn Weedman, Arthur, John W., Bauer, Catherine C., Crevecoeur, Isabelle, Cupillard, Christophe, Curtis, Matthew C., Dalén, Love, Bonilla, Marta Díaz-Zorita, Fernández-Lomana, J. Carlos Díez, Drucker, Dorothée G., Escrivá, Elena Escribano, Francken, Michael, Gibbon, Victoria E., Morales, Manuel R. González, Mateu, Ana Grande, Harvati, Katerina, Henry, Amanda G., Humphrey, Louise, Menéndez, Mario, Mihailovic, Dušan, Peresani, Marco, Morodera, Sofía Rodríguez, Roksandic, Mirjana, Rougier, Hélène, Sázelová, Sandra, Stock, Jay T., Straus, Lawrence Guy, Svoboda, Jiří, Teßmann, Barbara, Walker, Michael J., Power, Robert C., Lewis, Cecil M., Sankaranarayanan, Krithivasan, Guschanski, Katerina, Wrangham, Richard W., Dewhirst, Floyd E., Salazar-García, Domingo C., Krause, Johannes, Herbig, Alexander, and Warinner, Christina

Published
2021

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