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Chart question answering (ChartQA) tasks play a critical role in interpreting and extracting insights from visualization charts. While recent advancements in multimodal large language models (MLLMs) like GPT-4o have shown promise in high-level ChartQA tasks, such as chart captioning, their effectiveness in low-level ChartQA tasks (e.g., identifying correlations) remains underexplored. In this paper, we address this gap by evaluating MLLMs on low-level ChartQA using a newly curated dataset, ChartInsights, which consists of 22,347 (chart, task, query, answer) covering 10 data analysis tasks across 7 chart types. We systematically evaluate 19 advanced MLLMs, including 12 open-source and 7 closed-source models. The average accuracy rate across these models is 39.8%, with GPT-4o achieving the highest accuracy at 69.17%. To further explore the limitations of MLLMs in low-level ChartQA, we conduct experiments that alter visual elements of charts (e.g., changing color schemes, adding image noise) to assess their impact on the task effectiveness. Furthermore, we propose a new textual prompt strategy, Chain-of-Charts, tailored for low-level ChartQA tasks, which boosts performance by 14.41%, achieving an accuracy of 83.58%. Finally, incorporating a visual prompt strategy that directs attention to relevant visual elements further improves accuracy to 84.32%., Comment: EMNLP 2024 Conference Paper

3D modeling of biological structures is an inherently complex process, necessitating both biological and geometric understanding. Additionally, the complexity of user interfaces of 3D modeling tools and the associated steep learning curve further exacerbate the difficulty of authoring a 3D model. In this paper, we introduce a novel framework to address the challenge of using 3D modeling software by converting users' textual inputs into modeling actions within an interactive procedural modeling system. The framework incorporates a code generator of a novel code format and a corresponding code interpreter. The major technical innovation includes the user-refinement mechanism that captures the degree of user dissatisfaction with the modeling outcome, offers an interactive revision, and leverages this feedback for future improved 3D modeling. This entire framework is powered by large language models and eliminates the need for a traditional training process. We develop a prototype tool named Chat Modeling, offering both automatic and step-by-step 3D modeling approaches. Our evaluation of the framework with structural biologists highlights the potential of our approach being utilized in their scientific workflows. All supplemental materials are available at https://osf.io/x4qb7/.

Quantitative data is frequently represented using color, yet designing effective color mappings is a challenging task, requiring one to balance perceptual standards with personal color preference. Current design tools either overwhelm novices with complexity or offer limited customization options. We present ColorMaker, a mixed-initiative approach for creating colormaps. ColorMaker combines fluid user interaction with real-time optimization to generate smooth, continuous color ramps. Users specify their loose color preferences while leaving the algorithm to generate precise color sequences, meeting both designer needs and established guidelines. ColorMaker can create new colormaps, including designs accessible for people with color-vision deficiencies, starting from scratch or with only partial input, thus supporting ideation and iterative refinement. We show that our approach can generate designs with similar or superior perceptual characteristics to standard colormaps. A user study demonstrates how designers of varying skill levels can use this tool to create custom, high-quality colormaps. ColorMaker is available at https://colormaker.org, Comment: To appear at the ACM CHI '24 Conference on Human Factors in Computing Systems

The VAST Challenge 2020 Mini-Challenge 1 requires participants to identify the responsible white hat groups behind a fictional Internet outage. To address this task, we have created a visual analytics system named CA2: Cyber Attacks Analytics. This system is designed to efficiently compare and match subgraphs within an extensive graph containing anonymized profiles. Additionally, we showcase an iterative workflow that utilizes our system's capabilities to pinpoint the responsible group., Comment: IEEE Conference on Visual Analytics Science and Technology (VAST) Challenge Workshop 2020

To facilitate the reuse of existing charts, previous research has examined how to obtain a semantic understanding of a chart by deconstructing its visual representation into reusable components, such as encodings. However, existing deconstruction approaches primarily focus on chart styles, handling only basic layouts. In this paper, we investigate how to deconstruct chart layouts, focusing on rectangle-based ones, as they cover not only 17 chart types but also advanced layouts (e.g., small multiples, nested layouts). We develop an interactive tool, called Mystique, adopting a mixed-initiative approach to extract the axes and legend, and deconstruct a chart's layout into four semantic components: mark groups, spatial relationships, data encodings, and graphical constraints. Mystique employs a wizard interface that guides chart authors through a series of steps to specify how the deconstructed components map to their own data. On 150 rectangle-based SVG charts, Mystique achieves above 85% accuracy for axis and legend extraction and 96% accuracy for layout deconstruction. In a chart reproduction study, participants could easily reuse existing charts on new datasets. We discuss the current limitations of Mystique and future research directions., Comment: To appear at the 2023 IEEE Visualization Conference

Line-based density plots are used to reduce visual clutter in line charts with a multitude of individual lines. However, these traditional density plots are often perceived ambiguously, which obstructs the user's identification of underlying trends in complex datasets. Thus, we propose a novel image space coloring method for line-based density plots that enhances their interpretability. Our method employs color not only to visually communicate data density but also to highlight similar regions in the plot, allowing users to identify and distinguish trends easily. We achieve this by performing hierarchical clustering based on the lines passing through each region and mapping the identified clusters to the hue circle using circular MDS. Additionally, we propose a heuristic approach to assign each line to the most probable cluster, enabling users to analyze density and individual lines. We motivate our method by conducting a small-scale user study, demonstrating the effectiveness of our method using synthetic and real-world datasets, and providing an interactive online tool for generating colored line-based density plots., Comment: Published in IEEE Transactions on Visualization and Computer Graphics (Supplementary Material: https://osf.io/jm5yz/)

In this paper, we propose the t-FDP model, a force-directed placement method based on a novel bounded short-range force (t-force) defined by Student's t-distribution. Our formulation is flexible, exerts limited repulsive forces for nearby nodes and can be adapted separately in its short- and long-range effects. Using such forces in force-directed graph layouts yields better neighborhood preservation than current methods, while maintaining low stress errors. Our efficient implementation using a Fast Fourier Transform is one order of magnitude faster than state-of-the-art methods and two orders faster on the GPU, enabling us to perform parameter tuning by globally and locally adjusting the t-force in real-time for complex graphs. We demonstrate the quality of our approach by numerical evaluation against state-of-the-art approaches and extensions for interactive exploration., Comment: To appear in IEEE Transactions on Visualization and Computer Graphics

Color is one of the main visual channels used for highlighting elements of interest in visualization. However, in multi-class scatterplots, color highlighting often comes at the expense of degraded color discriminability. In this paper, we argue for context-preserving highlighting during the interactive exploration of multi-class scatterplots to achieve desired pop-out effects, while maintaining good perceptual separability among all classes and consistent color mapping schemes under varying points of interest. We do this by first generating two contrastive color mapping schemes with large and small contrasts to the background. Both schemes maintain good perceptual separability among all classes and ensure that when colors from the two palettes are assigned to the same class, they have a high color consistency in color names. We then interactively combine these two schemes to create a dynamic color mapping for highlighting different points of interest. We demonstrate the effectiveness through crowd-sourced experiments and case studies., Comment: To appear in CHI'23: ACM Conference on Human Factors in Computing Systems

We present angle-uniform parallel coordinates, a data-independent technique that deforms the image plane of parallel coordinates so that the angles of linear relationships between two variables are linearly mapped along the horizontal axis of the parallel coordinates plot. Despite being a common method for visualizing multidimensional data, parallel coordinates are ineffective for revealing positive correlations since the associated parallel coordinates points of such structures may be located at infinity in the image plane and the asymmetric encoding of negative and positive correlations may lead to unreliable estimations. To address this issue, we introduce a transformation that bounds all points horizontally using an angle-uniform mapping and shrinks them vertically in a structure-preserving fashion; polygonal lines become smooth curves and a symmetric representation of data correlations is achieved. We further propose a combined subsampling and density visualization approach to reduce visual clutter caused by overdrawing. Our method enables accurate visual pattern interpretation of data correlations, and its data-independent nature makes it applicable to all multidimensional datasets. The usefulness of our method is demonstrated using examples of synthetic and real-world datasets., Comment: Computational Visual Media, 2023

Dimensionality Reduction (DR) techniques can generate 2D projections and enable visual exploration of cluster structures of high-dimensional datasets. However, different DR techniques would yield various patterns, which significantly affect the performance of visual cluster analysis tasks. We present the results of a user study that investigates the influence of different DR techniques on visual cluster analysis. Our study focuses on the most concerned property types, namely the linearity and locality, and evaluates twelve representative DR techniques that cover the concerned properties. Four controlled experiments were conducted to evaluate how the DR techniques facilitate the tasks of 1) cluster identification, 2) membership identification, 3) distance comparison, and 4) density comparison, respectively. We also evaluated users' subjective preference of the DR techniques regarding the quality of projected clusters. The results show that: 1) Non-linear and Local techniques are preferred in cluster identification and membership identification; 2) Linear techniques perform better than non-linear techniques in density comparison; 3) UMAP (Uniform Manifold Approximation and Projection) and t-SNE (t-Distributed Stochastic Neighbor Embedding) perform the best in cluster identification and membership identification; 4) NMF (Nonnegative Matrix Factorization) has competitive performance in distance comparison; 5) t-SNLE (t-Distributed Stochastic Neighbor Linear Embedding) has competitive performance in density comparison., Comment: IEEE VIS 2021, to appear in IEEE Transactions on Visualization & Computer Graphics

Creating comprehensible visualizations of highly overlapping set-typed data is a challenging task due to its complexity. To facilitate insights into set connectivity and to leverage semantic relations between intersections, we propose a fast two-step layout technique for Euler diagrams that are both well-matched and well-formed. Our method conforms to established form guidelines for Euler diagrams regarding semantics, aesthetics, and readability. First, we establish an initial ordering of the data, which we then use to incrementally create a planar, connected, and monotone dual graph representation. In the next step, the graph is transformed into a circular layout that maintains the semantics and yields simple Euler diagrams with smooth curves. When the data cannot be represented by simple diagrams, our algorithm always falls back to a solution that is not well-formed but still well-matched, whereas previous methods often fail to produce expected results. We show the usefulness of our method for visualizing set-typed data using examples from text analysis and infographics. Furthermore, we discuss the characteristics of our approach and evaluate our method against state-of-the-art methods.

The manpower scheduling problem is a critical research field in the resource management area. Based on the existing studies on scheduling problem solutions, this paper transforms the manpower scheduling problem into a combinational optimization problem under multi-constraint conditions from a new perspective. It also uses logical paradigms to build a mathematical model for problem solution and an improved multi-dimensional evolution algorithm for solving the model. Moreover, the constraints discussed in this paper basically cover all the requirements of human resource coordination in modern society and are supported by our experiment results. In the discussion part, we compare our model with other heuristic algorithms or linear programming methods and prove that the model proposed in this paper makes a 25.7% increase in efficiency and a 17% increase in accuracy at most. In addition, to the numerical solution of the manpower scheduling problem, this paper also studies the algorithm for scheduling task list generation and the method of displaying scheduling results. As a result, we not only provide various modifications for the basic algorithm to solve different condition problems but also propose a new algorithm that increases at least 28.91% in time efficiency by comparing with different baseline models., Comment: none

Scribble-supervised semantic segmentation has gained much attention recently for its promising performance without high-quality annotations. Due to the lack of supervision, confident and consistent predictions are usually hard to obtain. Typically, people handle these problems to either adopt an auxiliary task with the well-labeled dataset or incorporate the graphical model with additional requirements on scribble annotations. Instead, this work aims to achieve semantic segmentation by scribble annotations directly without extra information and other limitations. Specifically, we propose holistic operations, including minimizing entropy and a network embedded random walk on neural representation to reduce uncertainty. Given the probabilistic transition matrix of a random walk, we further train the network with self-supervision on its neural eigenspace to impose consistency on predictions between related images. Comprehensive experiments and ablation studies verify the proposed approach, which demonstrates superiority over others; it is even comparable to some full-label supervised ones and works well when scribbles are randomly shrunk or dropped., Comment: arXiv admin note: substantial text overlap with arXiv:2011.05621

We propose a visualization method to understand the effect of multidimensional projection on local subspaces, using implicit function differentiation. Here, we understand the local subspace as the multidimensional local neighborhood of data points. Existing methods focus on the projection of multidimensional data points, and the neighborhood information is ignored. Our method is able to analyze the shape and directional information of the local subspace to gain more insights into the global structure of the data through the perception of local structures. Local subspaces are fitted by multidimensional ellipses that are spanned by basis vectors. An accurate and efficient vector transformation method is proposed based on analytical differentiation of multidimensional projections formulated as implicit functions. The results are visualized as glyphs and analyzed using a full set of specifically-designed interactions supported in our efficient web-based visualization tool. The usefulness of our method is demonstrated using various multi- and high-dimensional benchmark datasets. Our implicit differentiation vector transformation is evaluated through numerical comparisons; the overall method is evaluated through exploration examples and use cases.

We present an integrated approach for creating and assigning color palettes to different visualizations such as multi-class scatterplots, line, and bar charts. While other methods separate the creation of colors from their assignment, our approach takes data characteristics into account to produce color palettes, which are then assigned in a way that fosters better visual discrimination of classes. To do so, we use a customized optimization based on simulated annealing to maximize the combination of three carefully designed color scoring functions: point distinctness, name difference, and color discrimination. We compare our approach to state-ofthe-art palettes with a controlled user study for scatterplots and line charts, furthermore we performed a case study. Our results show that Palettailor, as a fully-automated approach, generates color palettes with a higher discrimination quality than existing approaches. The efficiency of our optimization allows us also to incorporate user modifications into the color selection process., Comment: 10 pages

We propose a new method to tackle the mapping challenge from time-series data to spatial image in the field of seismic exploration, i.e., reconstructing the velocity model directly from seismic data by deep neural networks (DNNs). The conventional way of addressing this ill-posed inversion problem is through iterative algorithms, which suffer from poor nonlinear mapping and strong nonuniqueness. Other attempts may either import human intervention errors or underuse seismic data. The challenge for DNNs mainly lies in the weak spatial correspondence, the uncertain reflection-reception relationship between seismic data and velocity model, as well as the time-varying property of seismic data. To tackle these challenges, we propose end-to-end seismic inversion networks (SeisInvNets) with novel components to make the best use of all seismic data. Specifically, we start with every seismic trace and enhance it with its neighborhood information, its observation setup, and the global context of its corresponding seismic profile. From the enhanced seismic traces, the spatially aligned feature maps can be learned and further concatenated to reconstruct a velocity model. In general, we let every seismic trace contribute to the reconstruction of the whole velocity model by finding spatial correspondence. The proposed SeisInvNet consistently produces improvements over the baselines and achieves promising performance on our synthesized and proposed SeisInv data set according to various evaluation metrics. The inversion results are more consistent with the target from the aspects of velocity values, subsurface structures, and geological interfaces. Moreover, the mechanism and the generalization of the proposed method are discussed and verified. Nevertheless, the generalization of deep-learning-based inversion methods on real data is still challenging and considering physics may be one potential solution.

Data science requires time-consuming iterative manual activities. In particular, activities such as data selection, preprocessing, transformation, and mining, highly depend on iterative trial-and-error processes that could be sped-up significantly by providing quick feedback on the impact of changes. The idea of progressive data science is to compute the results of changes in a progressive manner, returning a first approximation of results quickly and allow iterative refinements until converging to a final result. Enabling the user to interact with the intermediate results allows an early detection of erroneous or suboptimal choices, the guided definition of modifications to the pipeline and their quick assessment. In this paper, we discuss the progressiveness challenges arising in different steps of the data science pipeline. We describe how changes in each step of the pipeline impact the subsequent steps and outline why progressive data science will help to make the process more effective. Computing progressive approximations of outcomes resulting from changes creates numerous research challenges, especially if the changes are made in the early steps of the pipeline. We discuss these challenges and outline first steps towards progressiveness, which, we argue, will ultimately help to significantly speed-up the overall data science process.

Deep Neural Networks (DNNs) have recently shown state of the art performance on semantic segmentation tasks, however, they still suffer from problems of poor boundary localization and spatial fragmented predictions. The difficulties lie in the requirement of making dense predictions from a long path model all at once since details are hard to keep when data goes through deeper layers. Instead, in this work, we decompose this difficult task into two relative simple sub-tasks: seed detection which is required to predict initial predictions without the need of wholeness and preciseness, and similarity estimation which measures the possibility of any two nodes belong to the same class without the need of knowing which class they are. We use one branch network for one sub-task each, and apply a cascade of random walks base on hierarchical semantics to approximate a complex diffusion process which propagates seed information to the whole image according to the estimated similarities. The proposed DifNet consistently produces improvements over the baseline models with the same depth and with the equivalent number of parameters, and also achieves promising performance on Pascal VOC and Pascal Context dataset. OurDifNet is trained end-to-end without complex loss functions.