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5. Molecular Characterization of the Human Stomach Microbiota in Gastric Cancer Patients

Author

Yu, Guoqin, Torres, Javier, Hu, Nan, Medrano-Guzman, Rafael, Herrera-Goepfert, Roberto, Humphrys, Michael S, Wang, Lemin, Wang, Chaoyu, Ding, Ti, Ravel, Jacques, Taylor, Philip R, Abnet, Christian C, and Goldstein, Alisa M

Subjects
Microbiology, Biological Sciences, Genetics, Nutrition, Infectious Diseases, Digestive Diseases - (Peptic Ulcer), Rare Diseases, Cancer, Prevention, Emerging Infectious Diseases, Digestive Diseases, Adult, Aged, Bacteria, China, Female, Gastrointestinal Microbiome, Helicobacter pylori, Humans, Male, Mexico, Middle Aged, Stomach, Stomach Neoplasms, Young Adult, 16S rRNA, KEGG modules, gastric cancer, microbiome, Biochemistry and Cell Biology, Medical microbiology
Abstract

Helicobacter pylori (Hp) is the primary cause of gastric cancer but we know little of its relative abundance and other microbes in the stomach, especially at the time of gastric cancer diagnosis. Here we characterized the taxonomic and derived functional profiles of gastric microbiota in two different sets of gastric cancer patients, and compared them with microbial profiles in other body sites. Paired non-malignant and tumor tissues were sampled from 160 gastric cancer patients with 80 from China and 80 from Mexico. The 16S rRNA gene V3-V4 region was sequenced using MiSeq platform for taxonomic profiles. PICRUSt was used to predict functional profiles. Human Microbiome Project was used for comparison. We showed that Hp is the most abundant member of gastric microbiota in both Chinese and Mexican samples (51 and 24%, respectively), followed by oral-associated bacteria. Taxonomic (phylum-level) profiles of stomach microbiota resembled oral microbiota, especially when the Helicobacter reads were removed. The functional profiles of stomach microbiota, however, were distinct from those found in other body sites and had higher inter-subject dissimilarity. Gastric microbiota composition did not differ by Hp colonization status or stomach anatomic sites, but did differ between paired non-malignant and tumor tissues in either Chinese or Mexican samples. Our study showed that Hp is the dominant member of the non-malignant gastric tissue microbiota in many gastric cancer patients. Our results provide insights on the gastric microbiota composition and function in gastric cancer patients, which may have important clinical implications.

Published
2017

12. Data from Genomic Landscape of Somatic Alterations in Esophageal Squamous Cell Carcinoma and Gastric Cancer

Author

Hu, Nan, primary, Kadota, Mitsutaka, primary, Liu, Huaitian, primary, Abnet, Christian C., primary, Su, Hua, primary, Wu, Hailong, primary, Freedman, Neal D., primary, Yang, Howard H., primary, Wang, Chaoyu, primary, Yan, Chunhua, primary, Wang, Lemin, primary, Gere, Sheryl, primary, Hutchinson, Amy, primary, Song, Guohong, primary, Wang, Yuan, primary, Ding, Ti, primary, Qiao, You-Lin, primary, Koshiol, Jill, primary, Dawsey, Sanford M., primary, Giffen, Carol, primary, Goldstein, Alisa M., primary, Taylor, Philip R., primary, and Lee, Maxwell P., primary

Published
2023
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13. Supplementary table 8 from Genomic Landscape of Somatic Alterations in Esophageal Squamous Cell Carcinoma and Gastric Cancer

Author

Hu, Nan, primary, Kadota, Mitsutaka, primary, Liu, Huaitian, primary, Abnet, Christian C., primary, Su, Hua, primary, Wu, Hailong, primary, Freedman, Neal D., primary, Yang, Howard H., primary, Wang, Chaoyu, primary, Yan, Chunhua, primary, Wang, Lemin, primary, Gere, Sheryl, primary, Hutchinson, Amy, primary, Song, Guohong, primary, Wang, Yuan, primary, Ding, Ti, primary, Qiao, You-Lin, primary, Koshiol, Jill, primary, Dawsey, Sanford M., primary, Giffen, Carol, primary, Goldstein, Alisa M., primary, Taylor, Philip R., primary, and Lee, Maxwell P., primary

Published
2023
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14. Supplementary table 6 from Genomic Landscape of Somatic Alterations in Esophageal Squamous Cell Carcinoma and Gastric Cancer

Author

Hu, Nan, primary, Kadota, Mitsutaka, primary, Liu, Huaitian, primary, Abnet, Christian C., primary, Su, Hua, primary, Wu, Hailong, primary, Freedman, Neal D., primary, Yang, Howard H., primary, Wang, Chaoyu, primary, Yan, Chunhua, primary, Wang, Lemin, primary, Gere, Sheryl, primary, Hutchinson, Amy, primary, Song, Guohong, primary, Wang, Yuan, primary, Ding, Ti, primary, Qiao, You-Lin, primary, Koshiol, Jill, primary, Dawsey, Sanford M., primary, Giffen, Carol, primary, Goldstein, Alisa M., primary, Taylor, Philip R., primary, and Lee, Maxwell P., primary

Published
2023
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15. Supplementary table 2 from Genomic Landscape of Somatic Alterations in Esophageal Squamous Cell Carcinoma and Gastric Cancer

Author

Hu, Nan, primary, Kadota, Mitsutaka, primary, Liu, Huaitian, primary, Abnet, Christian C., primary, Su, Hua, primary, Wu, Hailong, primary, Freedman, Neal D., primary, Yang, Howard H., primary, Wang, Chaoyu, primary, Yan, Chunhua, primary, Wang, Lemin, primary, Gere, Sheryl, primary, Hutchinson, Amy, primary, Song, Guohong, primary, Wang, Yuan, primary, Ding, Ti, primary, Qiao, You-Lin, primary, Koshiol, Jill, primary, Dawsey, Sanford M., primary, Giffen, Carol, primary, Goldstein, Alisa M., primary, Taylor, Philip R., primary, and Lee, Maxwell P., primary

Published
2023
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16. Supplementary table 4 from Genomic Landscape of Somatic Alterations in Esophageal Squamous Cell Carcinoma and Gastric Cancer

Author

Hu, Nan, primary, Kadota, Mitsutaka, primary, Liu, Huaitian, primary, Abnet, Christian C., primary, Su, Hua, primary, Wu, Hailong, primary, Freedman, Neal D., primary, Yang, Howard H., primary, Wang, Chaoyu, primary, Yan, Chunhua, primary, Wang, Lemin, primary, Gere, Sheryl, primary, Hutchinson, Amy, primary, Song, Guohong, primary, Wang, Yuan, primary, Ding, Ti, primary, Qiao, You-Lin, primary, Koshiol, Jill, primary, Dawsey, Sanford M., primary, Giffen, Carol, primary, Goldstein, Alisa M., primary, Taylor, Philip R., primary, and Lee, Maxwell P., primary

Published
2023
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17. Table Legend from Genomic Landscape of Somatic Alterations in Esophageal Squamous Cell Carcinoma and Gastric Cancer

Author

Hu, Nan, primary, Kadota, Mitsutaka, primary, Liu, Huaitian, primary, Abnet, Christian C., primary, Su, Hua, primary, Wu, Hailong, primary, Freedman, Neal D., primary, Yang, Howard H., primary, Wang, Chaoyu, primary, Yan, Chunhua, primary, Wang, Lemin, primary, Gere, Sheryl, primary, Hutchinson, Amy, primary, Song, Guohong, primary, Wang, Yuan, primary, Ding, Ti, primary, Qiao, You-Lin, primary, Koshiol, Jill, primary, Dawsey, Sanford M., primary, Giffen, Carol, primary, Goldstein, Alisa M., primary, Taylor, Philip R., primary, and Lee, Maxwell P., primary

Published
2023
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18. Supplementary table 3 from Genomic Landscape of Somatic Alterations in Esophageal Squamous Cell Carcinoma and Gastric Cancer

Author

Hu, Nan, primary, Kadota, Mitsutaka, primary, Liu, Huaitian, primary, Abnet, Christian C., primary, Su, Hua, primary, Wu, Hailong, primary, Freedman, Neal D., primary, Yang, Howard H., primary, Wang, Chaoyu, primary, Yan, Chunhua, primary, Wang, Lemin, primary, Gere, Sheryl, primary, Hutchinson, Amy, primary, Song, Guohong, primary, Wang, Yuan, primary, Ding, Ti, primary, Qiao, You-Lin, primary, Koshiol, Jill, primary, Dawsey, Sanford M., primary, Giffen, Carol, primary, Goldstein, Alisa M., primary, Taylor, Philip R., primary, and Lee, Maxwell P., primary

Published
2023
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19. Supplementary table 5 from Genomic Landscape of Somatic Alterations in Esophageal Squamous Cell Carcinoma and Gastric Cancer

Author

Hu, Nan, primary, Kadota, Mitsutaka, primary, Liu, Huaitian, primary, Abnet, Christian C., primary, Su, Hua, primary, Wu, Hailong, primary, Freedman, Neal D., primary, Yang, Howard H., primary, Wang, Chaoyu, primary, Yan, Chunhua, primary, Wang, Lemin, primary, Gere, Sheryl, primary, Hutchinson, Amy, primary, Song, Guohong, primary, Wang, Yuan, primary, Ding, Ti, primary, Qiao, You-Lin, primary, Koshiol, Jill, primary, Dawsey, Sanford M., primary, Giffen, Carol, primary, Goldstein, Alisa M., primary, Taylor, Philip R., primary, and Lee, Maxwell P., primary

Published
2023
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20. Supplementary table 1 from Genomic Landscape of Somatic Alterations in Esophageal Squamous Cell Carcinoma and Gastric Cancer

Author

Hu, Nan, primary, Kadota, Mitsutaka, primary, Liu, Huaitian, primary, Abnet, Christian C., primary, Su, Hua, primary, Wu, Hailong, primary, Freedman, Neal D., primary, Yang, Howard H., primary, Wang, Chaoyu, primary, Yan, Chunhua, primary, Wang, Lemin, primary, Gere, Sheryl, primary, Hutchinson, Amy, primary, Song, Guohong, primary, Wang, Yuan, primary, Ding, Ti, primary, Qiao, You-Lin, primary, Koshiol, Jill, primary, Dawsey, Sanford M., primary, Giffen, Carol, primary, Goldstein, Alisa M., primary, Taylor, Philip R., primary, and Lee, Maxwell P., primary

Published
2023
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21. Supplementary table 7 from Genomic Landscape of Somatic Alterations in Esophageal Squamous Cell Carcinoma and Gastric Cancer

Author

Hu, Nan, primary, Kadota, Mitsutaka, primary, Liu, Huaitian, primary, Abnet, Christian C., primary, Su, Hua, primary, Wu, Hailong, primary, Freedman, Neal D., primary, Yang, Howard H., primary, Wang, Chaoyu, primary, Yan, Chunhua, primary, Wang, Lemin, primary, Gere, Sheryl, primary, Hutchinson, Amy, primary, Song, Guohong, primary, Wang, Yuan, primary, Ding, Ti, primary, Qiao, You-Lin, primary, Koshiol, Jill, primary, Dawsey, Sanford M., primary, Giffen, Carol, primary, Goldstein, Alisa M., primary, Taylor, Philip R., primary, and Lee, Maxwell P., primary

Published
2023
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22. Supplementary Figure 1 and Supplementary Tables 1 through 4 from PLCE1 mRNA and Protein Expression and Survival of Patients with Esophageal Squamous Cell Carcinoma and Gastric Adenocarcinoma

Author

Li, Wen-Qing, primary, Hu, Nan, primary, Burton, Victoria H., primary, Yang, Howard H., primary, Su, Hua, primary, Conway, Catherine M., primary, Wang, Lemin, primary, Wang, Chaoyu, primary, Ding, Ti, primary, Xu, Yi, primary, Giffen, Carol, primary, Abnet, Christian C., primary, Goldstein, Alisa M., primary, Hewitt, Stephen M., primary, and Taylor, Philip R., primary

Published
2023
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23. Association Between Circulating Levels of Sex Steroid Hormones and Barrett’s Esophagus in Men: A Case–Control Analysis

Author

Cook, Michael B., Wood, Shannon N., Cash, Brooks D., Young, Patrick, Acosta, Ruben D., Falk, Roni T., Pfeiffer, Ruth M., Hu, Nan, Su, Hua, Wang, Lemin, Wang, Chaoyu, Gherman, Barbara, Giffen, Carol, Dykes, Cathy, Turcotte, Veronique, Caron, Patrick, Guillemette, Chantal, Dawsey, Sanford M., Abnet, Christian C., Hyland, Paula L., and Taylor, Philip R.

Published
2015
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31. Efficacy and Safety of Different Aerobic Exercise Intensities in Patients With Heart Failure With Reduced Ejection Fraction: Design of a Multicenter Randomized Controlled Trial (HF-EI Trial)

Author

Shen, Ting, primary, Liu, Xiaoling, additional, Zhuang, Bo, additional, Luo, Qian, additional, Jin, Yishan, additional, Li, Guanghe, additional, Jiang, Yumei, additional, Li, Dejie, additional, Chen, Xianchuan, additional, Tang, Nuo, additional, Xu, Zhimin, additional, Wang, Lemin, additional, Zheng, Liang, additional, and Shen, Yuqin, additional

Published
2021
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32. Genetic variants in fas signaling pathway genes and risk of gastric cancer

Author

Hyland, Paula L., Lin, Shih-Wen, Hu, Nan, Zhang, Han, Wang, Lemin, Su, Hua, Wang, Chaoyu, Ding, Ti, Tang, Ze-Zhong, Fan, Jin-Hu, Qiao, You-Lin, Xiong, Xiaoqin, Wheeler, William, Giffen, Carol, Yu, Kai, Yuenger, Jeff, Burdett, Laurie, Wang, Zhaoming, Chanock, Stephen J., Tucker, Margaret A., Dawsey, Sanford M., Freedman, Neal D., Goldstein, Alisa M., Abnet, Christian C., and Taylor, Philip R.

Published
2014
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45. Prevalence, characteristics and survival of pulmonary hypertension due to chronic heart failure: a national multicenter prospective registry study

Author

Quan, Ruilin, primary, Huang, Shian, additional, Pang, Lingpin, additional, Shen, Jieyan, additional, Wu, Weifeng, additional, Tang, Fangming, additional, Zhu, Xiulong, additional, Su, Weiqing, additional, Sun, Jingzhi, additional, Yu, Zaixin, additional, Wang, Lemin, additional, Zhu, Xianyang, additional, Changming, Xiong, additional, and He, Jianguo, additional

Published
2020
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49. AVAILABILITY AND CHARACTERISTICS OF CARDIAC REHABILITATION PROGRAMS IN CHINA: A FOLLOW-UP NATIONAL SURVEY FROM THE NATIONAL SURVEY WRITING GROUP OF CHINESE SOCIETY OF CARDIAC PREVENTION AND REHABILITATION

Author

Ding, Rongjing, primary, Thomas, Randal, additional, Zhao, Dong, additional, Smith, Sidney, additional, Zhang, Zhixin, additional, Francisco, Lopez-Jimenez, additional, Squires, Ray, additional, Wang, Lemin, additional, and Hu, Dayi, additional

Published
2018
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