Search

The growing number of citations to original publications highlighted their utility across academia, but the dissemination of knowledge from tacit conceptualization to scientific publications and its global applications remains understudied, and the prediction of knowledge trends in a disciplinary context is rare. Addressing the gaps, this paper constructed a tree-like hierarchical model (Geotree) to dissect the knowledge evolution paths of the Geodetector theory (a case) using the Web of Science citation database. Our results revealed that the knowledge evolution of 932 citations to Geodetector was partitioned into periods: a budding period of initial theoretical exploration, a growing period for emerging topics in application, and a mature period marked by significant citation growth. Our test R2 of the predicting model over the next decade, considering the tree-like hierarchy across research directions and disciplines, was 100% higher than that of the other two (from 0.29 to 0.58). The knowledge spreading, from China to North America in 2011, Europe in 2012, Oceania in 2017, South America in 2018, and Africa in 2019, was more associated with a country s production of scientific publications (q-statistic = 0.307***) than its income level. The Geotree modeling of two other cases from space science and physics confirmed the reliability of the source publication-based approach in tracking knowledge diffusion. Our established research framework enriched the current methodology of information science and provided valuable references for policymakers and scholars to enhance their decision-making processes., Comment: 34 pages and 7 figures

Invariant Contrastive Learning (ICL) methods have achieved impressive performance across various domains. However, the absence of latent space representation for distortion (augmentation)-related information in the latent space makes ICL sub-optimal regarding training efficiency and robustness in downstream tasks. Recent studies suggest that introducing equivariance into Contrastive Learning (CL) can improve overall performance. In this paper, we revisit the roles of augmentation strategies and equivariance in improving CL's efficacy. We propose CLeVER (Contrastive Learning Via Equivariant Representation), a novel equivariant contrastive learning framework compatible with augmentation strategies of arbitrary complexity for various mainstream CL backbone models. Experimental results demonstrate that CLeVER effectively extracts and incorporates equivariant information from practical natural images, thereby improving the training efficiency and robustness of baseline models in downstream tasks and achieving state-of-the-art (SOTA) performance. Moreover, we find that leveraging equivariant information extracted by CLeVER simultaneously enhances rotational invariance and sensitivity across experimental tasks, and helps stabilize the framework when handling complex augmentations, particularly for models with small-scale backbones., Comment: Preprint. Under review

With the proposal of the Segment Anything Model (SAM), fine-tuning SAM for medical image segmentation (MIS) has become popular. However, due to the large size of the SAM model and the significant domain gap between natural and medical images, fine-tuning-based strategies are costly with potential risk of instability, feature damage and catastrophic forgetting. Furthermore, some methods of transferring SAM to a domain-specific MIS through fine-tuning strategies disable the model's prompting capability, severely limiting its utilization scenarios. In this paper, we propose an Auto-Prompting Module (APM), which provides SAM-based foundation model with Euclidean adaptive prompts in the target domain. Our experiments demonstrate that such adaptive prompts significantly improve SAM's non-fine-tuned performance in MIS. In addition, we propose a novel non-invasive method called Incremental Pattern Shifting (IPS) to adapt SAM to specific medical domains. Experimental results show that the IPS enables SAM to achieve state-of-the-art or competitive performance in MIS without the need for fine-tuning. By coupling these two methods, we propose ProMISe, an end-to-end non-fine-tuned framework for Promptable Medical Image Segmentation. Our experiments demonstrate that both using our methods individually or in combination achieves satisfactory performance in low-cost pattern shifting, with all of SAM's parameters frozen.

Purpose: Congenital heart defect (CHD) is the most common birth defect. Thoracic echocardiography (TTE) can provide sufficient cardiac structure information, evaluate hemodynamics and cardiac function, and is an effective method for atrial septal defect (ASD) examination. This paper aims to study a deep learning method based on cardiac ultrasound video to assist in ASD diagnosis. Materials and methods: We select two standard views of the atrial septum (subAS) and low parasternal four-compartment view (LPS4C) as the two views to identify ASD. We enlist data from 300 children patients as part of a double-blind experiment for five-fold cross-validation to verify the performance of our model. In addition, data from 30 children patients (15 positives and 15 negatives) are collected for clinician testing and compared to our model test results (these 30 samples do not participate in model training). We propose an echocardiography video-based atrial septal defect diagnosis system. In our model, we present a block random selection, maximal agreement decision and frame sampling strategy for training and testing respectively, resNet18 and r3D networks are used to extract the frame features and aggregate them to build a rich video-level representation. Results: We validate our model using our private dataset by five-cross validation. For ASD detection, we achieve 89.33 AUC, 84.95 accuracy, 85.70 sensitivity, 81.51 specificity and 81.99 F1 score. Conclusion: The proposed model is multiple instances learning-based deep learning model for video atrial septal defect detection which effectively improves ASD detection accuracy when compared to the performances of previous networks and clinical doctors.

Intrinsic topological superconducting materials are exotic and vital to develop the next-generation topological superconducting devices, topological quantum calculations, and quantum information technologies. Here, we predict the topological and nodal superconductivity of MS (M = Nb and Ta) transition-metal sulfides by using the density functional theory for superconductors combining with the symmetry indicators. We reveal their higher-order topology nature with an index of Z4 = 2. These materials have a higher Tc than the Nb or Ta metal superconductors due to their flat-band and strong electron-phonon coupling nature. Electron doping and lighter isotopes can effectively enhance the Tc. Our findings show that the MS (M = Nb and Ta) systems can be new platforms to study exotic physics in the higher-order topological superconductors, and provide a theoretical support to utilize them as the topological superconducting devices in the field of advanced topological quantum calculations and information technologies., Comment: 7 pages, 4 figures

Self-supervised learning is well known for its remarkable performance in representation learning and various downstream computer vision tasks. Recently, Positive-pair-Only Contrastive Learning (POCL) has achieved reliable performance without the need to construct positive-negative training sets. It reduces memory requirements by lessening the dependency on the batch size. The POCL method typically uses a single loss function to extract the distortion invariant representation (DIR) which describes the proximity of positive-pair representations affected by different distortions. This loss function implicitly enables the model to filter out or ignore the distortion variant representation (DVR) affected by different distortions. However, existing POCL methods do not explicitly enforce the disentanglement and exploitation of the actually valuable DVR. In addition, these POCL methods have been observed to be sensitive to augmentation strategies. To address these limitations, we propose a novel POCL framework named Distortion-Disentangled Contrastive Learning (DDCL) and a Distortion-Disentangled Loss (DDL). Our approach is the first to explicitly disentangle and exploit the DVR inside the model and feature stream to improve the overall representation utilization efficiency, robustness and representation ability. Experiments carried out demonstrate the superiority of our framework to Barlow Twins and Simsiam in terms of convergence, representation quality, and robustness on several benchmark datasets., Comment: Oral in WACV2024

Accurate fovea localization is essential for analyzing retinal diseases to prevent irreversible vision loss. While current deep learning-based methods outperform traditional ones, they still face challenges such as the lack of local anatomical landmarks around the fovea, the inability to robustly handle diseased retinal images, and the variations in image conditions. In this paper, we propose a novel transformer-based architecture called DualStreamFoveaNet (DSFN) for multi-cue fusion. This architecture explicitly incorporates long-range connections and global features using retina and vessel distributions for robust fovea localization. We introduce a spatial attention mechanism in the dual-stream encoder to extract and fuse self-learned anatomical information, focusing more on features distributed along blood vessels and significantly reducing computational costs by decreasing token numbers. Our extensive experiments show that the proposed architecture achieves state-of-the-art performance on two public datasets and one large-scale private dataset. Furthermore, we demonstrate that the DSFN is more robust on both normal and diseased retina images and has better generalization capacity in cross-dataset experiments., Comment: This paper is the camera-ready version with the IEEE template. Please check the final published version, which was published in the IEEE Journal of Biomedical and Health Informatics (10.1109/JBHI.2024.3445112)

Transformer-based models have been widely demonstrated to be successful in computer vision tasks by modelling long-range dependencies and capturing global representations. However, they are often dominated by features of large patterns leading to the loss of local details (e.g., boundaries and small objects), which are critical in medical image segmentation. To alleviate this problem, we propose a Dual-Aggregation Transformer Network called DuAT, which is characterized by two innovative designs, namely, the Global-to-Local Spatial Aggregation (GLSA) and Selective Boundary Aggregation (SBA) modules. The GLSA has the ability to aggregate and represent both global and local spatial features, which are beneficial for locating large and small objects, respectively. The SBA module is used to aggregate the boundary characteristic from low-level features and semantic information from high-level features for better preserving boundary details and locating the re-calibration objects. Extensive experiments in six benchmark datasets demonstrate that our proposed model outperforms state-of-the-art methods in the segmentation of skin lesion images, and polyps in colonoscopy images. In addition, our approach is more robust than existing methods in various challenging situations such as small object segmentation and ambiguous object boundaries.

Spatial statistics is dominated by spatial autocorrelation (SAC) based Kriging and BHM, and spatial local heterogeneity based hotspots and geographical regression methods, appraised as the first and second laws of Geography (Tobler 1970; Goodchild 2004), respectively. Spatial stratified heterogeneity (SSH), the phenomena of a partition that within strata is more similar than between strata, examples are climate zones and landuse classes and remote sensing classification, is prevalent in geography and understood since ancient Greek, is surprisingly neglected in Spatial Statistics, probably due to the existence of hundreds of classification algorithms. In this article, we go beyond the classifications and disclose that SSH is the sources of sample bias, statistic bias, modelling confounding and misleading CI, and recommend robust solutions to overcome the negativity. In the meantime, we elaborate four benefits from SSH: creating identical PDF or equivalent to random sampling in stratum; the spatial pattern in strata, the borders between strata as a specific information for nonlinear causation; and general interaction by overlaying two spatial patterns. We developed the equation of SSH and discuss its context. The comprehensive investigation formulates the statistics for SSH, presenting a new principle and toolbox in spatial statistics.