8,801 results on '"WEN Jin"'
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2. A compendium of genetic variations associated with promoter usage across 49 human tissues
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Jiapei Yuan, Yang Tong, Le Wang, Xiaoxiao Yang, Xiaochuan Liu, Meng Shu, Zekun Li, Wen Jin, Chenchen Guan, Yuting Wang, Qiang Zhang, and Yang Yang
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Science - Abstract
Abstract Promoters play a crucial role in regulating gene transcription. However, our understanding of how genetic variants influence alternative promoter selection is still incomplete. In this study, we implement a framework to identify genetic variants that affect the relative usage of alternative promoters, known as promoter usage quantitative trait loci (puQTLs). By constructing an atlas of human puQTLs across 49 different tissues from 838 individuals, we have identified approximately 76,856 independent loci associated with promoter usage, encompassing 602,009 genetic variants. Our study demonstrates that puQTLs represent a distinct type of molecular quantitative trait loci, effectively uncovering regulatory targets and patterns. Furthermore, puQTLs are regulating in a tissue-specific manner and are enriched with binding sites of epigenetic marks and transcription factors, especially those involved in chromatin architecture formation. Notably, we have also found that puQTLs colocalize with complex traits or diseases and contribute to their heritability. Collectively, our findings underscore the significant role of puQTLs in elucidating the molecular mechanisms underlying tissue development and complex diseases.
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- 2024
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3. TCEB2/HIF1A signaling axis promotes chemoresistance in ovarian cancer cells by enhancing glycolysis and angiogenesis
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Zhuo Deng, Bin Li, Wenzhi Wang, Wei Xia, Lu Zhang, Lihong Chen, and Wen Jin
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Ovarian cancer ,TCEB2 ,HIF1A ,Chemoresistance ,Angiogenesis ,Glycolysis ,Medicine - Abstract
Abstract Ovarian cancer is an extremely malignant gynaecological tumour with a poor patient prognosis and is often associated with chemoresistance. Thus, exploring new therapeutic approaches to improving tumour chemosensitivity is important. The expression of transcription elongation factor B polypeptide 2 (TCEB2) gene is reportedly upregulated in ovarian cancer tumour tissues with acquired resistance, but the specific mechanism involved in tumour resistance remains unclear. In this study, we found that TCEB2 was abnormally highly expressed in cisplatin-resistant tumour tissues and cells. TCEB2 silencing also inhibited the growth and glycolysis of SKOV-3/cisplatin (DDP) and A2780/DDP cells. We further incubated human umbilical vein endothelial cells (HUVECs) with culture supernatants from cisplatin-resistant cells having TCEB2 knockdown. Results revealed that the migration, invasion, and angiogenesis of HUVECs were significantly inhibited. Online bioinformatics analysis revealed that the hypoxia-inducible factor-1A (HIF-1A) protein may bind to TCEB2, and TCEB2 silencing inhibited SKOV-3/DDP cell growth and glycolysis by downregulating HIF1A expression. Similarly, TCEB2 promoted HUVEC migration, invasion, and angiogenesis by upregulating HIF1A expression. In vivo experiments showed that TCEB2 silencing enhanced the sensitivity of ovarian cancer nude mice to cisplatin and that TCEB2 knockdown inhibited the glycolysis and angiogenesis of tumour cells. Our findings can serve as a reference for treating chemoresistant ovarian cancer.
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- 2024
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4. DIPAN: Detecting personalized intronic polyadenylation derived neoantigens from RNA sequencing data
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Xiaochuan Liu, Wen Jin, Dengyi Bao, Tongxin He, Wenhui Wang, Zekun Li, Xiaoxiao Yang, Yang Tong, Meng Shu, Yuting Wang, Jiapei Yuan, and Yang Yang
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Intronic polyadenylation ,Cancer ,Neoantigen ,Mass spectrometry ,Biotechnology ,TP248.13-248.65 - Abstract
Intronic polyadenylation (IPA) refers to a particular type of alternative polyadenylation where a gene makes use of a polyadenylation site located within its introns. Aberrant IPA events have been observed in various types of cancer. IPA can produce noncoding transcripts or truncated protein-coding transcripts with altered coding sequences in the resulting protein product. Therefore, IPA events hold the potential to act as a reservoir of tumor neoantigens. Here, we developed a computational method termed DIPAN, which incorporates IPA detection, protein fragmentation, and MHC binding prediction to predict IPA-derived neoantigens. Utilizing RNA-seq from breast cancer cell lines and ovarian cancer clinical samples, we demonstrated the significant contribution of IPA events to the neoantigen repertoire. Through mass spectrometry immunopeptidome analysis, we further illustrated the processing and presentation of IPA-derived neoantigens on the surface of cancer cells. While most IPA-derived neoantigens are sample-specific, shared neoantigens were identified in both cancer cell lines and clinical samples. Furthermore, we demonstrated an association between IPA-derived neoantigen burden and overall survival in cancer patients.
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- 2024
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5. Energy availability and its association with health-related outcomes among national athletes at risk of relative energy deficiency in sports (REDs)
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Nik Shanita Safii, Muhammad Irfan Haiqal Marzuki, Nor Aini Jamil, Mohd Izham Mohamad, Wen Jin Chai, Nor MF Farah, and Jasmiza Khuzairi Jasme
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Medicine (General) ,R5-920 - Abstract
Background Low energy availability (LEA) occurs when athletes’ energy intake fails to match the energy expended during exercise, resulting in insufficient energy to support essential functions for optimal health, a condition known as relative energy deficiency in sports (REDs).Objective This study aims to explore the prevalence of LEA among Malaysian national athletes and its associations with health-related outcomes.Methods A total of 43 athletes (51.2% males, aged 18–40) identified previously as having moderate or high risk of REDs through a questionnaire underwent comprehensive clinical assessments. Resting metabolic rate (RMR) was measured using indirect calorimetry, with an RMR ratio of
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- 2024
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6. Dependence of debris flow susceptibility maps on sampling strategy with data-driven grid-based model
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Ning Jiang, Fenghuan Su, Ruilong Wei, Yu Huang, Wen Jin, Peng Huang, and Qing Zeng
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Debris flow susceptibility ,Sampling strategy ,Weights of evidence ,Logistic regression ,Deep neural network ,Ecology ,QH540-549.5 - Abstract
Different sampling strategies produce varying sample data, serve as the primary input data and directly affect the accuracy of predictions in data-driven grid-based susceptibility models. This study analyzes the accuracy and variation of debris flow susceptibility maps (DFSMs) generated by various sampling strategies. The study area is the Yingxiu region in China, where six sampling strategies were applied, including three sampling locations (deposition area, runout area, and source area) and two sampling types (centroid and polygon) for the debris flow inventory. The effectiveness of 10 conditioning factors used to build the model was assessed by using Pearson correlation coefficient, variance inflation factor, and information gain ratio (IGR) techniques. We then used Weight of Evidence (WofE), Logistic Regression (LR), and Deep Neural Network (DNN) models to produce DFSMs and quantify their performance using the receiver operating characteristic curve (ROC), Accuracy (ACC), Precision, F1 score, and Recall. The results show that the WofE (AUC: 0.754–0.960), LR (AUC: 0.761–0.965), and DNN (AUC: 0.786–0.976) models all perform well, but the DFSMs and dominant factors depend strongly on sampling strategies, especially on sampling location. If the sample areas are excessively large and span across different factor class labels, or if there is a concentration of either large or small sample areas within a specific region, the results of centroid and polygon sampling strategies may differ or even be contradictory.We recommend: (1) determining sampling locations based on the research objectives to provide more accurate evaluation results; (2) selecting the sampling type by first considering the sample size. If the aforementioned conditions are not present, the quicker and more convenient centroid sampling strategy can be chosen; and (3) determining an appropriate sampling strategy and ensuring the accuracy of initial samples are paramount before producing DFSMs.
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- 2024
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7. Formation and Reduction of Toxic Compounds Derived from the Maillard Reaction During the Thermal Processing of Different Food Matrices
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Ke Xiong, Meng-meng Li, Yi-qiang Chen, Yu-meng Hu, and Wen Jin
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Food processing contaminants ,Food safety ,Natural antioxidant ,New processing technology ,Reduction strategies ,Food processing and manufacture ,TP368-456 ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Advanced glycation end products (AGEs), heterocyclic aromatic amines (HAAs), acrylamide (AA), 5-hydroxymethylfurfural (5-HMF), and polycyclic aromatic hydrocarbons (PAHs) are toxic substances that are produced in certain foods during thermal processing by using common high-temperature unit operations such as frying, baking, roasting, grill cooking, extrusion, among others. Understanding the formation pathways of these potential risk factors, which can cause cancer or contribute to the development of many chronic diseases in humans, is crucial for reducing their occurrence in thermally processed foods. During thermal processing, food rich in carbohydrates, proteins, and lipids undergoes a crucial Maillard reaction, leading to the production of highly active carbonyl compounds. These compounds then react with other substances to form harmful substances, which ultimately affect negatively the health of the human body. Although these toxic compounds differ in various forms of formation, they all partake in the common Maillard pathway. This review primarily summarizes the occurrence, formation pathways, and reduction measures of common toxic compounds during the thermal processing of food, based on independent studies for each specific contaminant in its corresponding food matrix. Finally, it provides several approaches for the simultaneous reduction of multiple toxic compounds.
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- 2024
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8. Occurrence of mycotoxins in swine feed from South Korea
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Wen Jin, Soo-Yeon Park, Yo-Han Kim, Sung-Jae Kim, and Jeong-Hee Han
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mycotoxin ,swine farm ,feed ,afla ,zen ,don ,fum ,ota ,Veterinary medicine ,SF600-1100 - Abstract
Objectives: To update recent information on contamination levels of mycotoxins in South Korea. Materials and methods: A total of 208 samples sourced from the feeds of swine farms were collected. The contamination levels of mycotoxins, which are aflatoxin (Afla), ochratoxin A (OTA), deoxynivalenol (DON), zearalenone (ZEN), fumonisin (FUM), and T-2 toxin, were investigated by enzyme-linked immunosorbent assays (ELISAs). Results: The detection levels of the total samples were 78.91% for DON, 75.24% for Afla, 47.02% for ZEN, 68.31% for FUM, and 5.94% for OTA and T-2, which were not detected at all. Most of the analyzed mycotoxins showed significant high occurrences in 47.02%–78.91% of the swine feed samples. 11 of the 152 alfa-positive samples exceeded the maximum residue limit (MRL) of Afla proposed by the Korean regulation. In the analysis of mycotoxin detection levels by growth stage, ZEN was found in the nursery stage at a remarkably high concentration level (126.46 ± 63.76 ppb), exceeding the MRL of ZEN for piglets proposed by the European Commission. This mycotoxin was also found in the samples from the gestation barn (89.04 ± 46.05 ppb) and the farrowing house (105.58 ± 94.12) at a high concentration level. Afla was found in the nursery stage at a high concentration (8.00 ± 2.22 ppb), approaching the MRL (10 ppb) of Afla proposed by the Korean regulation. Conclusion: These results indicate that many swine farms in South Korea are still exposed to mycotoxin risk, and special attention and surveillance are necessary for these mycotoxin risks in swine farms. [J Adv Vet Anim Res 2024; 11(1.000): 125-131]
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- 2024
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9. InPACT: a computational method for accurate characterization of intronic polyadenylation from RNA sequencing data
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Xiaochuan Liu, Hao Chen, Zekun Li, Xiaoxiao Yang, Wen Jin, Yuting Wang, Jian Zheng, Long Li, Chenghao Xuan, Jiapei Yuan, and Yang Yang
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Science - Abstract
Abstract Alternative polyadenylation can occur in introns, termed intronic polyadenylation (IPA), has been implicated in diverse biological processes and diseases, as it can produce noncoding transcripts or transcripts with truncated coding regions. However, a reliable method is required to accurately characterize IPA. Here, we propose a computational method called InPACT, which allows for the precise characterization of IPA from conventional RNA-seq data. InPACT successfully identifies numerous previously unannotated IPA transcripts in human cells, many of which are translated, as evidenced by ribosome profiling data. We have demonstrated that InPACT outperforms other methods in terms of IPA identification and quantification. Moreover, InPACT applied to monocyte activation reveals temporally coordinated IPA events. Further application on single-cell RNA-seq data of human fetal bone marrow reveals the expression of several IPA isoforms in a context-specific manner. Therefore, InPACT represents a powerful tool for the accurate characterization of IPA from RNA-seq data.
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- 2024
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10. Biocontrol and Growth Promotion Potential of Bacillus subtilis CTXW 7-6-2 against Rhizoctonia solani that Causes Tobacco Target Spot Disease
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Huang Ning, Jin Xin, Wen Jin-Tao, Zhang Yi-Fei, Yang Xu, Wei Guang-Yu, Wang Yi-Kun, and Qin Min
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bacillus subtilis ,tobacco target spot ,rhizoctonia solani ,plant growth promotion ,biocontrol potential ,Genetics ,QH426-470 ,Microbiology ,QR1-502 - Abstract
Fungal diseases form perforated disease spots in tobacco plants, resulting in a decline in tobacco yield and quality. The present study investigated the antagonistic effect of Bacillus subtilis CTXW 7-6-2 against Rhizoctonia solani, its ability to promote the growth of tobacco seedlings, and the expression of disease resistance-related genes for efficient and eco-friendly plant disease control. Our results showed that CTXW 7-6-2 had the most vigorous growth after being cultured for 96 h, and its rate of inhibition of R. solani growth in vitro was 94.02%. The volatile compounds produced by CTXW 7-6-2 inhibited the growth of R. solani significantly (by 96.62%). The fungal growthinhibition rate of the B. subtilis CTXW 7-6-2 broth obtained after high-temperature and no-high-temperature sterile fermentation was low, at 50.88% and 54.63%, respectively. The lipopeptides extracted from the B. subtilis CTXW 7-6-2 fermentation broth showed a 74.88% fungal growth inhibition rate at a concentration of 100 mg/l. Scanning and transmission electron microscopy showed some organelle structural abnormalities, collapse, shrinkage, blurring, and dissolution in the R. solani mycelia. In addition, CTXW 7-6-2 increased tobacco seedling growth and improved leaf and root weight compared to the control. After CTXW 7-6-2 inoculation, tobacco leaves showed the upregulation of the PDF1.2, PPO, and PAL genes, which are closely related to target spot disease resistance. In conclusion, B. subtilis CTXW 7-6-2 may be an efficient biological control agent in tobacco agriculture and enhance plant growth potential.
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- 2024
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11. Pan-caner analysis identifies PSMA7 as a targets for amplification at 20q13.33 in tumorigenesis
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Guangying Sheng, Fuyu Li, Wen Jin, and Kankan Wang
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Medicine ,Science - Abstract
Abstract The chromosome 20 long arm (20q) is one of the genomic hotspots where copy number alterations frequently occur in multiple types of tumors. However, it remains elusive which genes are implicated in 20q-related tumorigenesis. Here, by querying TCGA and GEO databases, we observed frequent copy number amplification at 20q and the chromosome subband 20q13.33 was amplificated in multiple cancers. Among those genes at 20q13.33, PSMA7 was found with the strongest correlation with cancers. Further analysis revealed that PSMA7 amplification was the most frequent genetic alteration event conferring adverse prognosis in various cancers. Consistent with the strong positive correlation between PSMA7 amplification and gene expression, elevated PSMA7 expression was observed in 20 of 33 types of cancers with a close link to adverse outcomes in certain tumors. In addition, PSMA7 was essential for the growth of almost 1095 cancer lines. Mechanistically, aberrant PSMA7 most probably influenced the proteasome and protease-related pathways to promote tumorigenesis and might be antagonized by several compounds, e.g., Docetaxel in relevant cancers. The current in-depth pan-cancer analysis refines our understanding of the crucial oncogenic role of copy number amplifications at PSMA7 loci at the novel chromosome amplicon 20q13.33 across different tumors.
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- 2024
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12. Cellular hierarchy insights reveal leukemic stem-like cells and early death risk in acute promyelocytic leukemia
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Wen Jin, Yuting Dai, Li Chen, Honghu Zhu, Fangyi Dong, Hongming Zhu, Guoyu Meng, Junmin Li, Saijuan Chen, Zhu Chen, Hai Fang, and Kankan Wang
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Science - Abstract
Abstract Acute promyelocytic leukemia (APL) represents a paradigm for targeted differentiation therapy, with a minority of patients experiencing treatment failure and even early death. We here report a comprehensive single-cell analysis of 16 APL patients, uncovering cellular compositions and their impact on all-trans retinoic acid (ATRA) response in vivo and early death. We unveil a cellular differentiation hierarchy within APL blasts, rooted in leukemic stem-like cells. The oncogenic PML/RARα fusion protein exerts branch-specific regulation in the APL trajectory, including stem-like cells. APL cohort analysis establishes an association of leukemic stemness with elevated white blood cell counts and FLT3-ITD mutations. Furthermore, we construct an APL-specific stemness score, which proves effective in assessing early death risk. Finally, we show that ATRA induces differentiation of primitive blasts and patients with early death exhibit distinct stemness-associated transcriptional programs. Our work provides a thorough survey of APL cellular hierarchies, offering insights into cellular dynamics during targeted therapy.
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- 2024
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13. An atlas of cell-type-specific interactome networks across 44 human tumor types
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Zekun Li, Gerui Liu, Xiaoxiao Yang, Meng Shu, Wen Jin, Yang Tong, Xiaochuan Liu, Yuting Wang, Jiapei Yuan, and Yang Yang
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Tumor microenvironment ,Cell-type-specific ,Interactome network ,Immune cells ,Medicine ,Genetics ,QH426-470 - Abstract
Abstract Background Biological processes are controlled by groups of genes acting in concert. Investigating gene–gene interactions within different cell types can help researchers understand the regulatory mechanisms behind human complex diseases, such as tumors. Methods We collected extensive single-cell RNA-seq data from tumors, involving 563 patients with 44 different tumor types. Through our analysis, we identified various cell types in tumors and created an atlas of different immune cell subsets across different tumor types. Using the SCINET method, we reconstructed interactome networks specific to different cell types. Diverse functional data was then integrated to gain biological insights into the networks, including somatic mutation patterns and gene functional annotation. Additionally, genes with prognostic relevance within the networks were also identified. We also examined cell–cell communications to investigate how gene interactions modulate cell–cell interactions. Results We developed a data portal called CellNetdb for researchers to study cell-type-specific interactome networks. Our findings indicate that these networks can be used to identify genes with topological specificity in different cell types. We also found that prognostic genes can deconvolved into cell types through analyzing network connectivity. Additionally, we identified commonalities and differences in cell-type-specific networks across different tumor types. Our results suggest that these networks can be used to prioritize risk genes. Conclusions This study presented CellNetdb, a comprehensive repository featuring an atlas of cell-type-specific interactome networks across 44 human tumor types. The findings underscore the utility of these networks in delineating the intricacies of tumor microenvironments and advancing the understanding of molecular mechanisms underpinning human tumors.
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- 2024
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14. How Can Digital Villages Improve Basic Public Services Delivery in Rural Areas? Evidence from 1840 Counties in China
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Zijun Mao, Xiyue Zhu, Qi Zou, and Wen Jin
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digital villages ,basic public services ,digital services ,digital inclusion ,China ,Agriculture (General) ,S1-972 - Abstract
Digital transformation is spreading from urban to rural areas, and the construction of digital villages has become a key growth point for rural sustainable development globally. Digital villages improve the level of basic public services delivery in rural areas via the penetration of digital technology. However, few studies have empirically investigated the theoretical mechanisms underlying the impact of digital villages on various aspects of rural basic public services. To address these gaps, this study investigates the impact mechanisms of digital villages on rural basic public services delivery in terms of accessibility, equity, agility, holistic nature and participation. Using 1840 counties in China as the research sample, this study applies the entropy method to extract a composite index of basic public services and performs correlation, regression, and heterogeneity analyses to examine the effects of digital villages on basic public services delivery. Empirical analysis results show that the construction of digital villages is positively associated with the level of basic public services in rural areas. Meanwhile, heterogeneity analysis results confirms that this relationship is mainly observed in eastern counties but not observed in central and western counties. These findings provide a basis for using digital inclusion to improve basic public services delivery in rural areas and achieve balanced development across regions.
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- 2024
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15. The Proteasome-Family-Members-Based Prognostic Model Improves the Risk Classification for Adult Acute Myeloid Leukemia
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Guangying Sheng, Jingfen Tao, Peng Jin, Yilu Li, Wen Jin, and Kankan Wang
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acute myeloid leukemia ,proteasome family member ,expression ,overall survival ,prognostic model ,ELN stratification ,Biology (General) ,QH301-705.5 - Abstract
Background: The accumulation of diverse molecular and cytogenetic variations contributes to the heterogeneity of acute myeloid leukemia (AML), a cluster of hematologic malignancies that necessitates enhanced risk evaluation for prognostic prediction and therapeutic guidance. The ubiquitin–proteasome system plays a crucial role in AML; however, the specific contributions of 49 core proteasome family members (PSMs) in this context remain largely unexplored. Methods: The expression and survival significance of 49 PSMs in AML were evaluated using the data from BeatAML2.0, TCGA, and the GEO database, mainly through the K-M plots, differential genes enrichment analysis, and candidate compounds screening via R language and statistical software. Results: we employed LASSO and Cox regression analyses and developed a model comprising three PSMs (PSMB8, PSMG1, and PSMG4) aimed at predicting OS in adult AML patients, utilizing expression profiles from the BeatAML2.0 training datasets. Patients with higher risk scores were predominantly found in the AML–M2 subtype, exhibited poorer ELN stratification, showed no complete remission following induction therapies, and had a higher mortality status. Consistently, significantly worse OS was observed in high-risk patients across both the training and three validation datasets, underscoring the robust predictive capability of the three-PSMs model for AML outcomes. This model elucidated the distinct genetic abnormalities landscape between high- and low-risk groups and enhanced the ELN risk stratification system. Ultimately, the three-PSMs risk score captured AML-specific gene expression signatures, providing a molecular basis for selecting potential therapeutic agents. Conclusions: In summary, these findings manifested the significant potential of the PSM model for predicting AML survival and informed treatment strategies.
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- 2024
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16. Identifying the Characteristics and Implications of Post-Earthquake Debris Flow Events Based on Multi-Source Remote Sensing Images
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Wen Jin, Guotao Zhang, Yi Ding, Nanjiang Liu, and Xiaowei Huo
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multi-source remote sensing images ,loose materials ,post-earthquake debris flow ,channel evolution ,accumulation fan ,Science - Abstract
Strong earthquakes often bring amounts of loose material, disrupting the balance of material transportation within a watershed and severely impacting the restoration of the ecological environment and human safety downstream. Therefore, it is crucial to identify the frequency and scale of these debris flow events, as well as to explore their long-term development and impact on internal and external channels. Using multi-source remote sensing images from four perspectives, hillslope, channel, accumulation fan, and their relationship with the mainstream, we reconstructed a debris flow event dataset from 2008 to 2020, explored a method for identifying these events, and analyzed their impacts on channels and accumulation fans in Mozi Gully affected by the Wenchuan earthquake. Loose matter was predominantly found in areas proximate to the channel and at lower elevations during debris flow events. Alterations in channel width, accumulation fans downstream, and their potential to obstruct rivers proved to be vital for identifying the large scale of debris flow event. Finally, we encapsulated the evolution patterns and constraints of post-earthquake debris flows. Determination in frequency and scale could offer valuable supplementary data for scenario hypothesis parameters in post-earthquake disaster engineering prevention and control.
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- 2024
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17. Structural and functional characterization of IgG- and non-IgG-based T-cell-engaging bispecific antibodies
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Nishant Mohan, Safiat Ayinde, Hanjing Peng, Shraboni Dutta, Yi Shen, Vincent M. Falkowski, Thomas G. Biel, Tongzhong Ju, and Wen Jin Wu
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bispecific antibody ,bispecific T-cell engager ,epidermal growth factor receptor (EGFR) ,cluster of differentiation 3 (CD3) ,dual variable domain immunoglobulins (DVD-Ig) ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Bispecific T-cell-engaging antibodies are a growing class of therapeutics with numerous molecules being tested in clinical trials and, currently, seven of them have received market approval. They are structurally complex and function as adaptors to redirect the cytotoxicity of T cells to kill tumor cells. T-cell-engaging bispecific antibodies can be generally divided into two categories: IgG/IgG-like and non-IgG-like formats. Different formats may have different intrinsic potencies and physiochemical properties, and comprehensive studies are needed to gain a better understanding of how the differences in formats impact on structural and functional characteristics. In this study, we designed and generated bispecific T-cell-engaging antibodies with IgG-like (DVD-Ig) and non-IgG (BiTE) formats. Both target the same pair of antigens (EGFR and CD3) to minimize the possible influence of targets on functional characterization. We performed a side-by-side comparison to assess differences in the physiochemical and biological properties of these two bispecific T-cell-engaging antibodies using a variety of breast and ovarian cancer cell-based functional assays to delineate the structural–functional relationships and anti-tumor activities/potency. We found that the Fc portion of T-cell-engaging bispecific antibodies can significantly impact antigen binding activity, potency, and stability in addition to eliciting different mechanisms of action that contribute the killing of cancer cells.
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- 2024
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18. Shared genetic architecture highlights the bidirectional association between major depressive disorder and fracture risk
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Geng Tian, David Karasik, Jianguo Tao, Wen Jin, Haisheng Zhang, Pianpian Zhao, Zhimin Ying, Chengda Yuan, Ao Dong, Xiangjiao Yi, Mengyuan Yang, Weiliang Tian, and Houfeng Zheng
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Psychiatry ,RC435-571 - Abstract
Background There is limited evidence suggesting that osteoporosis might exacerbate depressive symptoms, while more studies demonstrate that depression negatively affects bone density and increases fracture risk.Aims To explore the relationship between major depressive disorder (MDD) and fracture risk.Methods We conducted a nested case-control analysis (32 670 patients with fracture and 397 017 individuals without fracture) and a matched cohort analysis (16 496 patients with MDD and 435 492 individuals without MDD) in the same prospective UK Biobank data set. Further, we investigated the shared genetic architecture between MDD and fracture with linkage disequilibrium score regression and the MiXeR statistical tools. We used the conditional/conjunctional false discovery rate approach to identify the specific shared loci. We calculated the weighted genetic risk score for individuals in the UK Biobank and logistic regression was used to confirm the association observed in the prospective study.Results We found that MDD was associated with a 14% increase in fracture risk (hazard ratio (HR) 1.14, 95% CI 1.14 to 1.15, p
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- 2024
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19. EFFECTS OF A CaO ADDITIVE ON THE STRUCTURE AND PROPERTIES OF ALUMINIUM TITANATE CERAMICS
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Hongquan Zhang, Ke Shi, and Wen Jin
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al₂tio₅ solid solution ,low thermal expansion ,thermal shock resistance ,cao additive ,Clay industries. Ceramics. Glass ,TP785-869 - Abstract
Al₂TiO₅ based ceramics with high mechanical strength and good thermal shock resistance were successfully prepared by adding 1 % -7 % CaO to the alumina titanium dioxide mixtures at 1280-1380 °C for 0.5 h, and the effects of the CaO additive and firing temperature on the phase composition and thermo-mechanical properties of the Al₂TiO₅ ceramics were investigated in the present work. The results show that CaO could promote the formation of the Al₂TiO₅ solid solution, showed a significant impact on the development of the phase composition. The aluminium titanate ceramics sintered with 3% CaO at 1350 °C for 30 min gave an average thermal expansion coefficient of (20-600 °C) 0.83×10-6 K-1, and a bending strength before and after three thermal shock cycles in water from 600 °C to room temperature of 40.59 MPa and 42.23 MPa, respectively.
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- 2024
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20. Preliminary Efficacy of Combined Laparoscopy and Cystoscopy in the Treatment of Bladder Diverticula
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WEI Mengchao, WANG Wenda, WANG Shijun, ZHANG Zhijun, and WEN Jin
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bladder diverticula ,laparoscopy ,cystoscopy ,efficacy ,safety ,Medicine - Abstract
Objective To exploratively analyze the efficacy and safety of combined laparoscopy and cystoscopy in the treatment of bladder diverticula. Methods Clinical data of patients who received bladder diverticulectomy in Peking Union Medical College Hospital from March 2007 to September 2022 were retrospectively collected.The patients were divided into open/laparoscopy alone group and combined laparoscopy and cystoscopy group based on surgical approach.Surgery-related outcomes and complication rates were compared. Results A total of 11 patients with bladder diverticula who met the inclusion and exclusion criteria were enrolled in thestudy, including 6 patients in the open/laparoscopy alone group and 5 patients in the combined laparoscopy and cystoscopy group.The median maximum diameter of diverticula in the open/laparoscopy alone group and combined laparoscopy and cystoscopy group were 7.5(4.5, 11.5) cm and 5.2(5.0, 7.9) cm, respectively, and the median diameter of diverticula neck were 1.1(1.0, 1.6) cm and 1.5(1.1, 1.8) cm, respectively.Operations were successfully performed in both two groups and the patients had normal urination after drawing the catheter.No recurrence of bladder diverticulum at 6 to 60 months of follow-up.The median operative time[150.0(142.5, 180.0) min vs. 160.0(108.8, 300.0) min], blood loss[50.0(35.0, 50.0) mL vs. 50.0(45.0, 62.5) mL]and indwelling time of drainage tube[5.0(3.5, 5.5) d vs. 4.5(4.0, 6.8) d]were similar between the two group.Compared to the open/laparoscopy alone group, the combined laparoscopy and cystoscopy group had a shorter postoperative hospital stay[6.0(6.0, 8.5) d vs. 9.5(7.0, 16.0) d]and longer indwelling time of urinary catheter[14.0(10.5, 14.0) d vs. 11.5(6.5, 13.3) d].No complications occurred in the combined laparoscopy and cystoscopy group.In the open/laparoscopy alone group, 2 patients underwent postoperative complications, including 1 patient with deep vein thrombosis of the lower extremities and 1 patient with hyperpyrexia. Conclusion Preliminary results show that cystoscopy combined with laparoscopic resection for bladder diverticula can achieve similar outcomes as open surgery alone or laparoscopic surgery, and with greater safety and faster postoperative patient recovery.
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- 2023
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21. EFFECT OF ALKALI METAL OXIDES ON THE SURFACE ENERGY OF CERAMIC GLAZE
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Hongquan Zhang, Wenjing Zhao, Wen Jin, and Li Ye
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ceramic glaze ,glossiness ,network structure ,surface energy ,water wettability ,antifouling and easy cleaning ,Clay industries. Ceramics. Glass ,TP785-869 - Abstract
A transparent ceramic glaze with good apparent quality and water wettability was successfully prepared by adjusting the mass fraction ratio of Na₂O/K₂O and R₂O/Al₂O₃ at 1280 °c. The effects of the Na₂O/K₂O and R₂O/Al₂O₃ ratios on the surface energy and glossiness of the ceramic glaze were studied in the present work. The results show that the mass fraction ratio of Na₂O/K₂O and R₂O/Al₂O₃ showed an obvious effect on the high temperature viscosity and melting temperature of the glaze, the density of the glaze network structure and the number of broken bonds on the glaze. When Na₂O/K₂O=0.8-1.6, R₂O/Al₂O₃=0.8-1.2, the glaze showed a glossiness of 88.3-108.3 with a 0.11%-12% increase, and the surface energy of 70.17-78.5 mJ · m-2 with a 5.62%-29.55% increase, being obviously higher than those of the basic glaze. The greater the surface energy of the glaze was, the greater the polarity component was, and the better the wettability of the water on the glaze was, which would be conducive to improving the antifouling and easy cleaning of ceramic products.
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- 2023
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22. PREPARATION AND FERROELECTRIC PROPERTIES OF STRONTIUM-DOPED HYDROXYAPATITE CERAMICS
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Hongquan Zhang, Qi Zhang, Wen Jin, and Yang Jingli
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strontium doping ,hydroxyapatite ,ferroelectric properties ,remnant polarization intensity ,Clay industries. Ceramics. Glass ,TP785-869 - Abstract
Strontium-doped hydroxyapatite ceramics with good ferroelectric properties were prepared using 5% bioactive phosphate glass as an additive at 700 °C in this paper. XRD, FTIR, SEM analyses and a ferroelectric tester were used to analyse the crystal structure, phase composition, microstructure and ferroelectric properties of the prepared ceramics. The results revealed that substitution of Ca2+ by Sr2+ in the HA lattice would lead to an increase in its lattice parameters and a decrease in crystallinity. Moreover, the lattice distortion and the increase in the electric dipole moment caused by the Sr2+ doping enhanced the ferroelectric properties of the Sr-HA ceramics. Increasing the density of the samples could enhance their ferroelectric properties. The remnant polarisation intensity increased from 0.0156 μC/cm² to 0.0728 μC/cm², the maximum polarisation intensity increased from 0.1210 μC/cm² to 0.1628 μC/cm².
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- 2023
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23. Elevated visceral adiposity index linked to improved cognitive function in middle-aged and elderly Chinese: evidence from the China health and retirement longitudinal study
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Zhaohao Zeng, Kunyu Huang, Yanmei Cen, Wen Jin, Yingao Shen, Lijiao Xiong, Fengju Mao, Guo Hong, Yu Luo, and Xiaoguang Luo
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cognitive function ,visceral adiposity index ,visceral obesity ,China health and retirement longitudinal study ,dementia ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
ObjectCognitive decline and obesity are major global public health issues, and their association has been widely acknowledged. The link between the visceral adiposity index (VAI) and cognitive function in the Chinese population remains uncertain. This study aims to investigate the effects of VAI levels on cognitive function in the Chinese middle-aged and elderly population.MethodsWe analyzed longitudinal data from the China Health and Retirement Longitudinal Study (CHARLS) collected in 2011, 2013, 2015, and 2018. VAI levels were divided into three tertiles. Generalized estimating equation (GEE) models were used to explore the relationships between VAI levels and cognitive function, including overall cognitive scores, episodic memory, and mental status. Adjustments were made for potential confounders.ResultsThe study consisted of 2,677 participants. Contrary to expectations, higher VAI levels were associated with higher overall cognitive scores and improved episodic memory scores, while no significant effect was observed on mental status. The GEE models consistently indicated that higher VAI levels were associated with higher overall cognitive scores, primarily due to their association with episodic memory. Stratified analyses revealed that the VAI was associated with better cognitive function primarily in males, individuals under 60 years old, those with lower education levels, rural residents, and married individuals, mainly in relation to episodic memory. No significant interactions were observed between VAI and demographic factors.ConclusionOur findings suggest that higher visceral adiposity is associated with slower cognitive decline in the Chinese middle-aged and elderly population, especially in its association with episodic memory. These results underline the need to further investigate the potential protective role of visceral fat in cognitive function, potentially offering new insights for interventions to enhance cognitive function and prevent dementia in this population.
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- 2023
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24. Association between diverticular disease and colorectal cancer: a bidirectional mendelian randomization study
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Yanxi Zhang, Han Zhang, Jinghan Zhu, Yazhou He, Peng Wang, Doudou Li, Xiaozhuan Liu, Wen Jin, Junxi Zhang, Chuan Xu, Zengli Yu, Xin Zhao, and Lingling Cui
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Colorectal cancer ,Diverticular disease ,Mendelian randomization ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background: Diverticular disease has been inconsistently associated with colorectal cancer risk. We conducted a bidirectional Mendelian randomization study to assess this association. Methods: Forty-three and seventy single-nucleotide polymorphisms associated with diverticular disease and colorectal cancer at the genome-wide significance level (p
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- 2023
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25. Identification of a key ceRNA network associated with ferroptosis in gastric cancer
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Wen Jin, Jianli Liu, Jie Yang, Zongqi Feng, Zhenxing Feng, Na Huang, Tingyu Yang, and Lan Yu
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Medicine ,Science - Abstract
Abstract Ferroptosis, a newly discovered irondependent form of regulated cell death caused by excessive accumulation of lipid peroxides, is linked to the development and treatment response of various types of cancer, including gastric cancer (GC). Noncoding RNAs (ncRNAs), as key regulators in cancer, have both oncogenic and tumor suppressive roles. However, studies on ferroptosis-related ncRNA networks in GC are still lacking. Here, we first identified 61 differentially expressed genes associated with ferroptosis in GC by computing and analyzing gene expression profile of tumor and normal tissues for GC. Then, upstream lncRNAs and miRNAs interacting with them were found through miRNet and miRBase databases, and hub lncRNAs and miRNAs were obtained through topological analysis. Finally, the ceRNA regulatory network linked to ferroptosis in GC was established, which includes two ferroptosis marker genes (TXNIP and TSC22D3), one driver gene (GABARAPL1), and one suppressor gene (CAV1). Kaplan-Meier survival analysis showed that changes in the expression of these genes were associated with the survival of GC patients. Furthermore, our study revealed that this ceRNA network may influence the progression of GC by regulating ferroptosis process. These results will help experimental researchers to design an experiment study to further explore the roles of this regulatory network in GC ferroptosis.
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- 2022
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26. PREPARATION AND THERMAL-MECHANICAL PROPERTIES OF ALUMINUM TITANATE BASED CERAMICS
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Hongquan Zhang, Zhiyong Peng, Wen Jin, Chen Pengjie, and Lin Fengsheng
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al₂tio₅ solid solution ,low thermal expansion ,thermal shock resistance ,cao additive ,Clay industries. Ceramics. Glass ,TP785-869 - Abstract
Aluminium titanate (Al₂TiO₅) based ceramic materials were successfully processed through the addition of porcelain clay and different amounts of CaO to the stoichiometric alumina - titania mixtures that contain commonly used MgO and Fe₂O₃ additives at 1350-1400 ̊C for 1 h. The effect of the addition of CaO and sintering temperatures on the formation of the Al₂TiO₅ ceramics and thermal-mechanical performances were investigated. The results revealed that CaO promoted the formation of a long columnar Al₂TiO₅ solid solution and anorthite as well as gahnite phases. Due to the mismatch of the thermal expansion coefficient between the Al₂TiO₅ solid solution crystals and the anorthite and gahnite phases, a compressive residual stress developed on the surface of the Al₂TiO₅ solid solution particulates, effectively improving the mechanical properties and inhibiting the thermal decomposition of the Al₂TiO₅ solid solution and the microcrack propagation. The average thermal expansion coefficient (20-800 ̊C) of the sample with 3 wt% CaO sintered at 1400 ̊C for 60 min was 0.80×10-6 ̊C-1, and the flexural strength of the sample with 5 wt% CaO sintered at 1380 ̊C was as high as 58.59 MPa, with a 12.43 % increase in the strength after the thermal shock test.
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- 2022
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27. Microbiota and metabolites alterations in proximal and distal gastric cancer patients
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Yan Yang, Daofeng Dai, Wen Jin, Yingying Huang, Yingzi Zhang, Yiran Chen, Wankun Wang, Wu Lin, Xiangliu Chen, Jing Zhang, Haohao Wang, Haibin Zhang, and Lisong Teng
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Proximal gastric cancer ,Distal gastric cancer ,Microbiome ,Metabolomics ,Medicine - Abstract
Abstract Background Globally, gastric cancer is the third most common cancer and the third leading cause of cancer death. Proximal and distal gastric cancers have distinct clinical and biological behaviors. The microbial composition and metabolic differences in proximal and distal gastric cancers have not been fully studied and discussed. Methods In this study, the gastric microbiome of 13 proximal gastric cancer tissues, 16 distal gastric cancer tissues, and their matched non-tumor tissues were characterized using 16S rRNA amplicon sequencing. Additionally, 10 proximal gastric cancer tissues, 11 distal gastric cancer tissues, and their matched non-tumor tissues were assessed by untargeted metabolomics. Results There was no significant difference in microbial diversity and richness between the proximal and distal gastric cancer tissues. At the genus level, the abundance of Rikenellaceae_RC9_gut_group, Porphyromonas, Catonella, Proteus, Oribacterium, and Moraxella were significantly increased in Proximal T, whereas that of Methylobacterium_Methylorubrum was significantly increased in Distal T. The untargeted metabolomics analysis revealed 30 discriminative metabolites between Distal T and Distal N. In contrast, there were only 4 discriminative metabolites between Proximal T and Proximal N. In distal gastric cancer, different metabolites were scattered through multiple pathway, including the sphingolipid signaling pathway, arginine biosynthesis, protein digestion and absorption, alanine, aspartate and, glutamate metabolism, etc.In proximal gastric cancer, differential microbial metabolites were mainly related to hormone metabolism. Conclusion Methylobacterium-Methylorubrum was significantly increased in Distal T, positively correlated with cancer-promoting metabolites, and negatively correlated with cancer-inhibiting metabolites. Rikenellaceae_RC_gut_group was significantly increased in Proximal T and positively correlated with cancer-promoting metabolites. Further studies regarding the functions of the above-mentioned microorganisms and metabolites were warranted as the results may reveal the different mechanisms underlying the occurrence and development of proximal and distal gastric cancers and provide a basis for future treatments. Importance First, the differences in microbial composition and metabolites between the proximal and distal gastric cancers were described; then, the correlation between microbiota and metabolites was preliminarily discussed. These microbes and metabolites deserve further investigations as they may reveal the different mechanisms involved in the occurrence and development of proximal and distal gastric cancers and provide a basis for future treatments.
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- 2022
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28. Stigmasterol attenuates hepatic steatosis in rats by strengthening the intestinal barrier and improving bile acid metabolism
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Yaxin Zhang, Yuyan Gu, Jing Jiang, Xiaobing Cui, Saibo Cheng, Linling Liu, Zhiyong Huang, Rongxin Liao, Peng Zhao, Jieying Yu, Jing Wang, Yuhua Jia, Wen Jin, and Fenghua Zhou
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Nutrition. Foods and food supply ,TX341-641 ,Food processing and manufacture ,TP368-456 - Abstract
Abstract Stigmasterol (ST) has been shown to improve both lipid and bile acid (BA) metabolism. However, the mechanism(s) by which ST prevents dyslipidemia via BA metabolism, and the potential involvement of other regulatory mechanisms, remains unclear. Here, we found that ST treatment effectively alleviates lipid metabolism disorder induced by a high-fat diet (HFD). Moreover, we also show that fecal microbiota transplantation from ST-treated rats displays similar protective effects in rats fed on an HFD. Our data confirm that the gut microbiota plays a key role in attenuating HFD-induced fat deposition and metabolic disorders. In particular, ST reverses HFD-induced gut microbiota dysbiosis in rats by reducing the relative abundance of Erysipelotrichaceae and Allobaculum bacteria in the gut. In addition, ST treatment also modifies the serum and fecal BA metabolome profiles in rats, especially in CYP7A1 mediated BA metabolic pathways. Furthermore, chenodeoxycholic acid combined with ST improves the therapeutic effects in HFD-induced dyslipidemia and hepatic steatosis. In addition, this treatment strategy also alters BA metabolism profiles via the CYP7A1 pathway and gut microbiota. Taken together, ST exerts beneficial effects against HFD-induced hyperlipidemia and obesity with the underlying mechanism being partially related to both the reprogramming of the intestinal microbiota and metabolism of BAs in enterohepatic circulation. This study provides a theoretical basis for further study of the anti-obesity effects of ST and consideration of the gut microbiota as a potential target for the treatment of HFD-induced dyslipidemia.
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- 2022
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29. Above-room-temperature strong intrinsic ferromagnetism in 2D van der Waals Fe3GaTe2 with large perpendicular magnetic anisotropy
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Gaojie Zhang, Fei Guo, Hao Wu, Xiaokun Wen, Li Yang, Wen Jin, Wenfeng Zhang, and Haixin Chang
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Science - Abstract
In isotropic two dimensional systems, long range ferromagnetic order is supressed by thermal fluctuations, and it is due to magnetic anisotropy that van der Waals magnetic materials can have ferromagnetic ordering at finite temperatures. Usually this magnetic anisotropy is relatively small, but in this manuscript Zhang et al make a two dimensional van der Waals material with exceptionally large perpendicular magnetic anisotropy and ferromagnetic ordering that exits up to 350 K.
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- 2022
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30. The Value of Insulin-like Growth Factor 2 in Urinary Exosomes of Bladder Urothelial Carcinoma
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YANG Tingkai, WEN Jin, and JI Zhigang
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bladder urothelial carcinoma ,exosomes ,insulin-like growth factor 2 ,Medicine - Abstract
Objective To explore the expression of insulin-like growth factor 2 (IGF2) in urinary exosomes of patients with bladder urothelial carcinoma, and to evaluate its clinical value in the diagnosis of bladder urothelial carcinoma. Methods Patients with bladder urothelial carcinoma or non-urothelial carcinoma diagnosed and treated by Peking Union Medical College Hospital from September to December 2020 were prospectively selected as the research subjects. Fluorescence quantitative reverse transcription PCR was used to detect the expression levels of IGF2 in the urine exosomes of the two groups. The sensitivity, specificity, positive likelihood ratio, and negative likelihood ratio of IGF2 in urinary exosomes for diagnosing bladder urothelial carcinoma were calculated, using pathological results as the gold standard. Results A total of 35 patients with bladder urothelial carcinoma and 60 non-urothelial carcinoma patients who met the inclusion and exclusion criteria were selected. The positive expression rate of IGF2 in urinary exosomes in patients with bladder urothelial carcinoma was significantly higher than that in patients with non-urothelial carcinoma (71.4% vs. 10.0%, P=0.000). The sensitivity of IGF2 in urinary exosomes for diagnosing bladder urothelial carcinoma was 71.43% (95% CI: 53.48%-84.76%), the specificity was 90.00% (95% CI: 78.83%-95.87%), the positive likelihood ratio was 7.14 (95% CI: 3.25-15.70), the negative likelihood ratio was 0.32 (95% CI: 0.19-0.54). Conclusions IGF2 is highly expressed in urinary exosomes of patients with bladder urothelial carcinoma, which has high diagnostic specificity for bladder urothelial carcinoma, but a slightly lower sensitivity. IGF2 is expected to be used as a primary screening index for bladder urothelial carcinoma.
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- 2022
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31. Advances in Urinary Tumor Markers of Prostate Cancer
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WANG Shijun, LI Yingjie, and WEN Jin
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tumor marker ,prostate cancer ,urine ,diagnosis ,Medicine - Abstract
Prostate cancer (PCa) is currently the second most common cancer in men worldwide.The current gold standard for diagnosing PCa relies on ultrasound-guided systematic core needle biopsy after detection changes in a digital rectal examination and elevated prostate-specific antigen(PSA) level in the blood serum. Yet, serum PSA cannot reliably discriminate between benign pathologies and clinically significant forms of PCa. A common problem caused by the low specificity of this marker is over diagnosis, which leads to unnecessary biopsies and over treatment. This may be associated with various treatment complications (such as bleeding or infection) and generate unnecessary costs. Therefore, there is an urgent need for more specific and predictive biomarkers to effectively discriminate between aggressive and nonaggressive tumors and to avoid unnecessary prostate biopsies. Biomarkers derived from prostate cancer cells are released into prostatic fluids and then into urine. Urine after manipulation of the prostate is enriched with PCa biomarkers, including prostate cancer cells, DNAs, RNAs, proteins and other small molecules. In recent years, several non-invasive, cost-effective, high-accuracy urinary diagnostic biomarkers such as PSA, PCA3, MALAT1 and microRNA have been developed. This article reviews the biomarkers for the non-invasive testing of PCa in urine.
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- 2022
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32. CRNDE: A valuable long noncoding RNA for diagnosis and therapy of solid and hematological malignancies
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Xuefei Ma, Wen Jin, Chaoxian Zhao, Xuefeng Wang, and Kankan Wang
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MT: Non-coding RNAs ,long noncoding RNA ,CRNDE ,clinical value ,molecular mechanism ,solid tumor ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Colorectal neoplasia differentially expressed (CRNDE) is an oncogenic long noncoding RNA (lncRNA). Increased CRNDE expression was initially discovered in colorectal cancer and then in a variety of solid tumors and hematological malignancies. CRNDE participates in multiple biological processes, such as cell proliferation, differentiation, migration, and apoptosis. CRNDE has been shown to modulate target gene expression through multiple mechanisms, including transcriptional regulation, post-transcriptional regulation, and competition for microRNA (miRNA) binding. In this review, we summarize the evidence that supports CRNDE in the diagnosis and prognosis predicting of cancers. The functional roles and molecular mechanisms of CRNDE are further described for major types of solid tumors and hematological malignancies. The therapeutic potential of CRNDE as a target for research and development is also discussed.
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- 2022
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33. Therapy of reprogrammable immune activating supramolecular-based chitosan membranes for skin regeneration
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ShuRui Chen, Jinpeng Gao, Xiang Luo, Yu Sun, Wen Jin, and Rongrong He
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Supramolecular ,Chitosan membranes ,Drug release ,Skin regeneration ,Immune response ,Macrophages ,Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
Immune cells play an important role in the inflammatory and proliferative stages of diabetes skin defect. How to regulate immune response is the key to skin regeneration. To address this challenge, we developed chitosan polymer membrane (CM) to directly deliver solamarine (Sol) for targeting reactive oxygen species (ROS)-enriched microenvironment. The Sol-loaded CM (Sol-CM) inhibits the excessive recruitment of inflammatory cells, and polarizes macrophages into an anti-inflammatory phenotype “M2″ to inhibit excessive inflammatory response. Therefore, the Sol-CM can help maintain immune homoeostasis, which contributes to the pathogenesis of wound. The Sol-CM demonstrated excellent therapeutic efficacy in treating wound. In addition, Sol-CM significantly attenuates focal inflammation and fibrosis level, thus potentially leading to a highly innovative and translational approach to treat diabetic wound efficiently and safely.
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- 2023
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34. Discovering the key genes and important DNA methylation regions in breast cancer
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Yan-Ni Cao, Qian-Zhong Li, Yu-Xian Liu, Wen Jin, and Rui Hou
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Breast cancer ,DNA methylation ,Oncogene ,Tumor suppressor gene ,Biomarker ,Genetics ,QH426-470 - Abstract
Abstract Background Breast cancer is the malignant tumor with the highest incidence in women. DNA methylation has an important effect on breast cancer, but the effect of abnormal DNA methylation on gene expression in breast cancer is still unclear. Therefore, it is very important to find therapeutic targets related to DNA methylation. Results In this work, we calculated the DNA methylation distribution and gene expression level in cancer and para-cancerous tissues for breast cancer samples. We found that DNA methylation in key regions is closely related to gene expression by analyzing the relationship between the distribution characteristics of DNA methylation in different regions and the change of gene expression level. Finally, the 18 key genes (17 tumor suppressor genes and 1 oncogene) related to prognosis were confirmed by the survival analysis of clinical data. Some important DNA methylation regions in these genes that result in breast cancer were found. Conclusions We believe that 17 TSGs and 1 oncogene may be breast cancer biomarkers regulated by DNA methylation in key regions. These results will help to explore DNA methylation biomarkers as potential therapeutic targets for breast cancer.
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- 2022
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35. Severe fever with thrombocytopenia syndrome virus trends and hotspots in clinical research: A bibliometric analysis of global research
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Zhengyu Zhang, Juntao Tan, Wen Jin, Hong Qian, Loulei Wang, Hu Zhou, Yuan Yuan, and Xiaoxin Wu
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SFTSV ,bibliometric ,data visualization ,CiteSpace ,VOSviewer ,Public aspects of medicine ,RA1-1270 - Abstract
BackgroundSince severe fever with thrombocytopenia syndrome virus (SFTSV) was first reported in 2009, a large number of relevant studies have been published. However, no bibliometrics analysis has been conducted on the literature focusing on SFTSV. This study aims to evaluate the research hotspots and future development trends of SFTSV research through bibliometric analysis, and to provide a new perspective and reference for future SFTSV research and the prevention of SFTSV.MethodsWe retrieved global publications on SFTSV from the Web of Science Core Collection (WoSCC) and Scopus databases from inception of the database until 2022 using VOSviewer software and CiteSpace was used for bibliometric analysis.ResultsThe number of SFTSV-related publications has increased rapidly since 2011, peaking in 2021. A total of 45 countries/regions have published relevant publications, with China topping the list with 359. The Viruses-Basel has published the most papers on SFTSV. In addition, Yu et al. have made the greatest contribution to SFTSV research, with their published paper being the most frequently cited. The most popular SFTSV study topics included: (1) pathogenesis and symptoms, (2) characteristics of the virus and infected patients, and (3) transmission mechanism and risk factors for SFTSV.ConclusionsIn this study, we provide a detailed description of the research developments in SFTSV since its discovery and summarize the SFTSV research trends. SFTSV research is in a phase of explosive development, and a large number of publications have been published in the past decade. There is a lack of collaboration between countries and institutions, and international collaboration and exchanges should be strengthened in the future. The current research hotpots of SFTSV is antiviral therapy, immunotherapy, virus transmission mechanism and immune response.
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- 2023
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36. Test Suite Reduction via Submodular Function Maximization
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WEN Jin, ZHANG Xing-yu, SHA Chao-feng, LIU Yan-jun
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software testing ,test suite reduction ,fault detection ,topic model ,submodular function ,Computer software ,QA76.75-76.765 ,Technology (General) ,T1-995 - Abstract
As regression testing size and cost increase,test suite reduction becomes more important to promote its efficiency.Du-ring the selection of test suite subset,we are supposed to consider the representativeness and diversity of subset,and apply an effective algorithm to solve it.Aimed at test suite reduction,a submodular function maximization based algorithm,SubTSR,is proposed in this paper.Although the introduced discrete optimization problem is an NP-hard problem,the heuristic greedy search is used in this paper to find the suboptimal solution with approximation guarantee by exploiting the submodularity of the objective function.To validate the effectiveness of the SubTSR algorithm,the SubTSR algorithm is experimented on fifteen datasets with changes of topic count in LDA and distance for similarity measurement,and compared with other test suite reduction algorithms about the average percentage of fault-detection,fault detection loss rate,first faulty test's index and other metrics.The experiment results show that the SubTSR algorithm has significant improvement in fault detection performance compared with other algorithms,and its performance remains relatively stable on different datasets.Under the text representation change due to topic count change,the SubTSR combined with Manhattan distance keeps relatively stable compared with other algorithms.
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- 2021
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37. Identification of a pharmacological approach to reduce ACE2 expression and development of an in vitro COVID-19 viral entry model
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Yukinori Endo, Brady T. Hickerson, Natalia A. Ilyushina, Nishant Mohan, Hanjing Peng, Kazuyo Takeda, Raymond P. Donnelly, and Wen Jin Wu
- Subjects
SARS-CoV-2 ,ACE2 ,Calu-3 ,Spike protein ,ARP2/3 complex inhibitors ,Sodium-hydrogen exchangers (NHEs) inhibitors ,Microbiology ,QR1-502 ,Public aspects of medicine ,RA1-1270 - Abstract
Because of rapid emergence and circulation of the SARS-CoV-2 variants, especially Omicron which shows increased transmissibility and resistant to antibodies, there is an urgent need to develop novel therapeutic drugs to treat COVID-19. In this study we developed an in vitro cellular model to explore the regulation of ACE2 expression and its correlation with ACE2-mediated viral entry. We examined ACE2 expression in a variety of human cell lines, some of which are commonly used to study SARS-CoV-2. Using the developed model, we identified a number of inhibitors which reduced ACE2 protein expression. The greatest reduction of ACE2 expression was observed when CK869, an inhibitor of the actin-related protein 2/3 (ARP2/3) complex, was combined with 5-(N-ethyl-N-isopropyl)-amiloride (EIPA), an inhibitor of sodium-hydrogen exchangers (NHEs), after treatment for 24 h. Using pseudotyped lentivirus expressing the SARS-CoV-2 full-length spike protein, we found that ACE2-dependent viral entry was inhibited in CK869 + EIPA-treated Calu-3 and MDA-MB-468 cells. This study provides an in vitro model that can be used for the screening of novel therapeutic candidates that may be warranted for further pre-clinical and clinical studies on COVID-19 countermeasures.
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- 2022
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38. EFFECTS OF THE AMOUNT OF STARCH AND THE HOLDING TIME ON THE SYNTHESIS OF SiC-TiC COMPOSITE POWDERS
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Jilin Hu, Yu Cao, Liu Xin, Zhu Ling, Li Jing, Wen Jin, Peng Yangxi, and Chen Zhanjun
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influence ,carbothermal reduction method ,silicon carbide ,titanium carbide ,preparation ,Clay industries. Ceramics. Glass ,TP785-869 - Abstract
SiC-TiC composite powders were synthesised through carbothermal reduction under an argon atmosphere by using silica sol, starch, and TiO₂ as the raw materials. The influences of the starch dosage and holding time on the synthesis of SiC-TiC composite powder are discussed in detail. The samples were characterised using an X-ray diffractometer (XRD), an integrated thermal analyser (TG-DTA), a scanning electron microscope (SEM), and an energy spectrometer (EDS). The results showed that the SiC-TiC composite powders were completely synthesised after holding at 1550 °C for 3 h when the amount of excess starch was 5 wt% and after holding at 1550 °C for 2 h when the amount of excess starch was 10 wt%-20 wt%. The morphological characteristics of the powder samples with 5 wt%-15 wt% excess starch calcined at 1550 °C for 2 h were mainly flake particles, spherical particles, irregularly shaped particles and elongated whiskers. Conversely, no whiskers were found in the powder samples calcined at 1550 °C for 2 h when the amount of excess starch was 20 wt%.
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- 2021
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39. Carotid Body Tumor, Cardiac Paraganglioma, Adrenal Pheochromocytoma: A Contest with Hypercatecholamineemia
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SUN Juan, LIU Jianzhou, WEN Jin, LI Hanzhong, JI Zhigang, DONG Dexin, YE Zixing, MIAO Qi, TONG Anli, HUANG Yuguang, and LONG Yun
- Subjects
paraganglioma ,pheochromocytoma ,adrenal gland ,catecholamine ,Medicine - Abstract
This patient was an elderly man with left carotid body tumor, cardiac paraganglioma and right adrenal pheochromocytoma at the same time. It was a rare case with a complex condition, and the diagnosis and treatment were difficult. After two rounds of discussion in the multidisciplinary team, our hospital successively removed the lesions of the heart and the right adrenal, and the patient was discharged smoothly after the operations. The diagnosis and treatment of this patient reflects the significance of the multidisciplinary team on the diagnosis and treatment of difficult diseases.
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- 2021
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40. Post-selection shifts the transition frequency of helium in an atomic beam
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Wen, Jin-Lu, Tang, Jia-Dong, Lv, Ya-Nan, Sun, Yu R., Zou, Chang-Ling, Dong, Jun-Feng, and Hu, Shui-Ming
- Subjects
Physics - Atomic Physics ,Quantum Physics - Abstract
Post-selecting output states in measurements can effectively amplify weak signals and improve precision. However, post-selection effects may also introduce unintended biases in precision measurements. Here, we investigate the influence of post-selection in the precision spectroscopy of the $2^3S - 2^3P$ transition of helium ($^4$He) using an atomic beam. We directly observe that post-selection based on atomic positions causes a shift in the measured transition frequency, amounting to approximately -55 kHz. After accounting for this post-selection shift, we obtain a corrected frequency of $276,764,094,712.45 \pm 0.86$ kHz for the $2^3S_1 - 2^3P_0$ transition. Combining this result with existing data for $^3$He, we derive a new value for the difference in squared nuclear charge radii, $\delta r^2 [r_{h}^{2} - r_{\alpha}^{2}] = 1.0733 \pm 0.0021$ fm$^2$. This value shows a $2.8\sigma$ deviation from measurements of muonic helium ions, potentially pointing to new physics that challenges lepton universality in quantum electrodynamics., Comment: 14 pages including appendix
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- 2024
41. Case Report: Successful therapy with all-trans retinoic acid combined with chemotherapy followed by hematopoietic stem cell transplantation for acute promyelocytic leukemia carrying the BCOR-RARA fusion gene
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Li Chen, Hongming Zhu, Yongmei Zhu, Wen Jin, Fangyi Dong, Jianfeng Li, Jiong Hu, Qiusheng Chen, Kankan Wang, and Junmin Li
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acute promyelocytic leukemia ,variant ,BCOR-RARA ,all-trans retinoic acid ,allogeneic hematopoietic stem cell transplantation ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Acute promyelocytic leukemia (APL) is characterized by the balanced translocation of chromosomes 15 and 17, resulting in the formation of PML-RARA fusion gene. More than 98% of APL have PML-RARA fusion, and less than 2% have other types of RARA gene partners, which named variant APL (vAPL). In the present study, we reported a vAPL with BCOR-RARA, which was the third case of BCOR-RARA APL published. The patient achieved complete remission (CR) with all-trans retinoic acid (ATRA) monotherapy, and molecular CR with ATRA plus standard chemotherapy. After that, he underwent allogeneic hematopoietic stem cell transplantation (allo-HSCT) and ATRA maintenance and maintained a molecular CR status. This case provided valuable insights into the accurate identification of vAPL. Moreover, ATRA combined with chemotherapy followed by allo-HSCT was suggested as an optimal choice for those vAPL patients who had a high risk of relapse.
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- 2022
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42. Optimizing Urban Stock Space through District Boundary Reorganization: Hangzhou’s Administrative Adjustment
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Fei Chao, Chen You, and Wen Jin
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central city ,scale restructuring ,regional reconstruction ,Hangzhou ,urban administrative district adjustments ,Agriculture - Abstract
Since China is the largest developing country in the world, its urban reconstruction has significance for countries undergoing rapid urbanization. The recent development of its central cities has gradually changed from large-scale incremental expansion to stock optimization. District boundary reorganization has become a new trend in reforming China’s administrative division of central cities. From the perspective of scalar reorganization and regional reconstruction, the adjustment of urban administrative divisions can be regarded as a regional construction strategy initiated by city governments to reshape the spatial structure, improve the governance relationship, and enhance the cities’ competitiveness. This study takes Hangzhou, an important central city in eastern China, as a case study to illustrate two ways in which a central city can optimize its urban spaces through district boundary recombination: scale recombination and regional recombination. The findings demonstrate two advantages of district boundary reorganization for China’s central cities: it eases the integration of new city districts and urban areas and promotes balanced development within the city. In the future, more Chinese cities will likely choose to reorganize their district boundaries.
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- 2023
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43. CircNR3C2 promotes HRD1-mediated tumor-suppressive effect via sponging miR-513a-3p in triple-negative breast cancer
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Ya Fan, Jia Wang, Wen Jin, Yifei Sun, Yuemei Xu, Yipin Wang, Xiubin Liang, and Dongming Su
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HRD1 ,Vimentin ,CircRNA ,Breast cancer ,Metastasis ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background E3 ubiquitin ligase HRD1 (HMG-CoA reductase degradation protein 1, alias synoviolin with SYVN1 as the official gene symbol) was found downregulated and acting as a tumor suppressor in breast cancer, while the exact expression profile of HRD1 in different breast cancer subtypes remains unknown. Recent studies characterized circular RNAs (circRNAs) playing an regulatory role as miRNA sponge in tumor progression, presenting a new viewpoint for the post-transcriptional regulation of cancer-related genes. Methods Examination of the expression of HRD1 protein and mRNA was implemented using public microarray/RNA-sequencing datasets and breast cancer tissues/cell lines. Based on public RNA-sequencing results, online databases and enrichment/clustering analyses were used to predict the specific combinations of circRNA/miRNA that potentially govern HRD1 expression. Gain-of-function and rescue experiments in vitro and in vivo were executed to evaluate the suppressive effects of circNR3C2 on breast cancer progression through HRD1-mediated proteasomal degradation of Vimentin, which was identified using immunoblotting, immunoprecipitation, and in vitro ubiquitination assays. Results HRD1 is significantly underexpressed in triple-negative breast cancer (TNBC) against other subtypes and has an inverse correlation with Vimentin, inhibiting the proliferation, migration, invasion and EMT (epithelial-mesenchymal transition) process of breast cancer cells via inducing polyubiquitination-mediated proteasomal degradation of Vimentin. CircNR3C2 (hsa_circ_0071127) is also remarkably downregulated in TNBC, negatively correlated with the distant metastasis and lethality of invasive breast carcinoma. Overexpressing circNR3C2 in vitro and in vivo leads to a crucial enhancement of the tumor-suppressive effects of HRD1 through sponging miR-513a-3p. Conclusions Collectively, we elucidated a bona fide circNR3C2/miR-513a-3p/HRD1/Vimentin axis that negatively regulates the metastasis of TNBC, suggesting that circNR3C2 and HRD1 can act as potential prognostic biomarkers. Our study may facilitate the development of therapeutic agents targeting circNR3C2 and HRD1 for patients with aggressive breast cancer.
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- 2021
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44. Interplay between hypertriglyceridemia and acute promyelocytic leukemia mediated by the cooperation of peroxisome proliferator-activated receptor-α with the PML/RAR α fusion protein on super-enhancers
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Shishuang Wu, Shufen Li, Peng Jin, Yi Zhang, Li Chen, Wen Jin, Junmin Li, and Kankan Wang
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Patients with newly diagnosed acute promyelocytic leukemia (APL) are often obese or overweight, accompanied by metabolic disorders, such as dyslipidemia. However, the link between dyslipidemia and leukemia is obscure. Here, we conducted a retrospective study containing 1,412 cases (319 newly diagnosed APL patients, 393 newly diagnosed non-APL acute myeloid leukemia patients, and 700 non-tumor controls) and found that APL patients had higher triglyceride levels than non- APL and control groups. Using clinical data, we revealed that hypertriglyceridemia served as a risk factor for early death in APL patients, and there was a positive correlation between triglyceride levels and leukocyte counts. RNA sequencing analysis of APL patients having high or normal triglyceride levels highlighted the contribution of peroxisome proliferatoractivated receptor-α (PPARα), a crucial regulator of cell metabolism and a transcription factor involved in cancer development. The genome-wide chromatin occupancy of PPARα revealed that PPARα co-existed with PML/RARα within the super-enhancer regions to promote cell proliferation. PPARα knockdown affected the expression of target genes responsible for APL proliferation, including FLT3, and functionally inhibited the proliferation of APL cells. Moreover, in vivo results in mice having high fat diet-induced high triglyceride levels supported the connection between high triglyceride levels and the leukemic burden, as well as the involvement of PPARα-mediated-FLT3 activation in the proliferation of APL cells. Our findings shed light on the association between APL proliferation and high triglyceride levels and provide a genetic link to PPARα-mediated hyperlipidemia in APL.
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- 2022
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45. A Retrospective and Multicenter Study on COVID-19 in Inner Mongolia: Evaluating the Influence of Sampling Locations on Nucleic Acid Test and the Dynamics of Clinical and Prognostic Indexes
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Lan Yu, Ailan Wang, Tianbao Li, Wen Jin, Geng Tian, Chunmei Yun, Fei Gao, Xiuzhen Fan, Huimin Wang, Huajun Zhang, and Dejun Sun
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COVID-19 ,clinical characteristics ,prognosis model ,feces testing ,machine learning ,Medicine (General) ,R5-920 - Abstract
COVID-19 is spreading widely, and the pandemic is seriously threatening public health throughout the world. A comprehensive study on the optimal sampling types and timing for an efficient SARS-CoV-2 test has not been reported. We collected clinical information and the values of 55 biochemical indices for 237 COVID-19 patients, with 37 matched non-COVID-19 pneumonia patients and 131 healthy people in Inner Mongolia as control. In addition, the results of dynamic detection of SARS-CoV-2 using oropharynx swab, pharynx swab, and feces were collected from 197 COVID-19 patients. SARS-CoV-2 RNA positive in feces specimen was present in approximately one-third of COVID-19 patients. The positive detection rate of SARS-CoV-2 RNA in feces was significantly higher than both in the oropharynx and nasopharynx swab (P < 0.05) in the late period of the disease, which is not the case in the early period of the disease. There were statistically significant differences in the levels of blood LDH, CRP, platelet count, neutrophilic granulocyte count, white blood cell number, and lymphocyte count between COVID-19 and non-COVID-19 pneumonia patients. Finally, we developed and compared five machine-learning models to predict the prognosis of COVID-19 patients based on biochemical indices at disease onset and demographic characteristics. The best model achieved an area under the curve of 0.853 in the 10-fold cross-validation.
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- 2022
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46. Enhancing Accuracy and Numerical Stability for Repetitive Time-Varying System Identification: An Iterative Learning Approach
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Fazhi Song, Yang Liu, Xianli Wang, Wen Jin, and Li Li
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Iterative learning algorithm ,time-varying system ,parameter estimation ,output-error system ,bias compensation ,singular value decomposition ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
Time-varying system identification is an appealing but challenging research area. Existing identification algorithms are usually subject to either low estimation accuracy or bad numerical stability. These deficiencies motivate the development of an iterative learning identification algorithm in this paper. Three distinguished features of the proposed method result in the achievement of high estimation accuracy and high numerical stability: i) recursion along the iteration axis, ii) bias compensation, and iii) singular value decomposition (SVD). Firstly, an extra iteration axis associated with the original time axis is introduced in the parameter estimation process. A norm-optimal identification approach with the balance between convergence speed and noise robustness is then proposed along the iteration axis, followed by further analysis on the accuracy and the numerical stability. Secondly, in order to eliminate the estimation bias in the presence of noise and thus to improve the accuracy, a bias compensation algorithm along the iteration axis is proposed. Thirdly, a SVD-based update algorithm for the covariance matrix is developed to avoid the possible numerical instability during iterations. Numerical examples are finally provided to validate the algorithm and confirm its effectiveness.
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- 2020
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47. An Agent-Based Approach to Integrate Human Dynamics Into Disaster Risk Management
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Shengnan Wu, Yu Lei, Saini Yang, Peng Cui, and Wen Jin
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disaster risk management ,early warning system ,agent-based modeling ,human dynamics ,debris flows ,Science - Abstract
Disaster risk management (DRM) is the application of disaster risk reduction policies and strategies to reduce existing disaster risk and manage residual risk. However, due to dynamic human factors, it is challenging to depict and assess the effectiveness of DRM measures, and their implementation usually lacks a sufficient evidence-based evaluation process. Therefore, this study developed an agent-based model to integrate dynamic human behaviors into the DRM measures and evaluated their effectiveness in casualty reduction. The model was calibrated to simulate the debris flow event at Longchi town, China in 13 August 2010. The early warning system (EWS) and related DRM measures were taken as examples. The effectiveness of different DRM measures was quantitated by comparing the number of potential casualties. The main findings were: 1) EWS was very effective for community-based DRM as it could significantly decrease the average casualties by 30%. 2) Credibility of EWS was critical to its effectiveness. Less credible EWS might reduce its effectiveness by 9%. 3) EWS could be supplemented by other measures to further reduce casualties by 6%. 4) The downside effects of other DRM measures to EWS might exist and reduce its effectiveness by up to 5%. This study put forward an evidence-based approach to help policymakers select more cost-effective DRM measure, especially in the less developed countries where the available resources for DRM are limited.
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- 2022
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48. Highly‐Tunable Intrinsic Room‐Temperature Ferromagnetism in 2D van der Waals Semiconductor CrxGa1−xTe
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Gaojie Zhang, Hao Wu, Liang Zhang, Shanfei Zhang, Li Yang, Pengfei Gao, Xiaokun Wen, Wen Jin, Fei Guo, Yuanmiao Xie, Hongda Li, Boran Tao, Wenfeng Zhang, and Haixin Chang
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CrxGa1−xTe ,room‐temperature ferromagnetism ,semiconductors ,van der Waals ,Science - Abstract
Abstract The combination of semiconductivity and tunable ferromagnetism is pivotal for electrical control of ferromagnetism and next‐generation low‐power spintronic devices. However, Curie temperatures (TC) for most traditional intrinsic ferromagnetic semiconductors (≤200 K) and recently discovered two‐dimensional (2D) ones (
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- 2022
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49. Calculation Model of the Axial Dispersion Distribution of Cylindrical-Warhead Fragments
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Ning Jiang, Wen Bin Li, Wen Jin Yao, and Da Cheng Gao
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Physics ,QC1-999 - Abstract
The dispersion distribution characteristics of prefabricated fragments from an improvised explosive device (IED) are essential in defense technology development. To improve warhead design, it is essential to predict a fragment’s velocity and dispersion distribution accurately. This paper investigates a fragment’s flying angle from a detonated warhead with a cylindrical charge under a one-end central detonation. A modified formula for calculating the fragment dispersion distribution at each axial position of the warhead was obtained based on experimental data and model analysis. The impacts of the following parameters on the flying angle were considered in the formula: ratio of charge mass to shell mass, charge diameter, axial sparse effect, and relative axial shell position. The formula was verified by experimentation to be suitable for wide applications using different validation samples. Theoretical calculations with the formula show good accuracy in predicting the flying angle of cylindrical-shell fragments, agreeing with experimental data. The proposed model meets the error requirements of engineering applications. This work provides a theoretical foundation for subsequent research on damage effectiveness and IED damage assessment.
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- 2022
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50. Artificial Intelligence Systems for Diagnosis and Clinical Classification of COVID-19
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Lan Yu, Xiaoli Shi, Xiaoling Liu, Wen Jin, Xiaoqing Jia, Shuxue Xi, Ailan Wang, Tianbao Li, Xiao Zhang, Geng Tian, and Dejun Sun
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COVID-19 ,CT images ,laboratory findings ,artificial intelligence ,correlation analysis ,Microbiology ,QR1-502 - Abstract
Objectives: COVID-19 is highly infectious and has been widely spread worldwide, with more than 159 million confirmed cases and more than 3 million deaths as of May 11, 2021. It has become a serious public health event threatening people’s lives and safety. Due to the rapid transmission and long incubation period, shortage of medical resources would easily occur in the short term of discovering disease cases. Therefore, we aimed to construct an artificial intelligent framework to rapidly distinguish patients with COVID-19 from common pneumonia and non-pneumonia populations based on computed tomography (CT) images. Furthermore, we explored artificial intelligence (AI) algorithms to integrate CT features and laboratory findings on admission to predict the clinical classification of COVID-19. This will ease the burden of doctors in this emergency period and aid them to perform timely and appropriate treatment on patients.Methods: We collected all CT images and clinical data of novel coronavirus pneumonia cases in Inner Mongolia, including domestic cases and those imported from abroad; then, three models based on transfer learning to distinguish COVID-19 from other pneumonia and non-pneumonia population were developed. In addition, CT features and laboratory findings on admission were combined to predict clinical types of COVID-19 using AI algorithms. Lastly, Spearman’s correlation test was applied to study correlations of CT characteristics and laboratory findings.Results: Among three models to distinguish COVID-19 based on CT, vgg19 showed excellent diagnostic performance, with area under the curve (AUC) of the receiver operating characteristic (ROC) curve at 95%. Together with laboratory findings, we were able to predict clinical types of COVID-19 with AUC of the ROC curve at 90%. Furthermore, biochemical markers, such as C-reactive protein (CRP), LYM, and lactic dehydrogenase (LDH) were identified and correlated with CT features.Conclusion: We developed an AI model to identify patients who were positive for COVID-19 according to the results of the first CT examination after admission and predict the progression combined with laboratory findings. In addition, we obtained important clinical characteristics that correlated with the CT image features. Together, our AI system could rapidly diagnose COVID-19 and predict clinical types to assist clinicians perform appropriate clinical management.
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- 2021
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