30 results on '"Vleugel M"'
Search Results
2. Expression of HIF-1α in human tumours
- Author
-
van Diest, P J, Vleugel, M M, and van der Wall, E
- Published
- 2005
3. Differential prognostic impact of hypoxia induced and diffuse HIF-1α expression in invasive breast cancer
- Author
-
Vleugel, M M, Greijer, A E, Shvarts, A, van der Groep, P, van Berkel, M, Aarbodem, Y, van Tinteren, H, Harris, A L, van Diest, P J, and van der Wall, E
- Published
- 2005
4. Investigating wind-driven surface currents in the Rheic Ocean through modelling
- Author
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Vleugel, M., Meijer, Dr. P. Th. (Thesis Advisor), Trabucho Alexandre, Dr. J., Vleugel, M., Meijer, Dr. P. Th. (Thesis Advisor), and Trabucho Alexandre, Dr. J.
- Abstract
The Rheic Ocean was one of the most important oceans of the Paleozoic, evidenced by remnants that can be found across present-day Central America, North America, Europe, and Northern Africa. Its closure led to the formation of Pangea and has been attributed to the abrupt change in climate and mass extinctions that occurred at the end of the Devonian. Although geological evidence of the shallow environments of the Rheic Ocean can be found at its former margin edges, subduction of the ocean and subsequent destruction of its lithosphere leaves no direct evidence of its deep-sea environment. Inferences of the mid-Paleozoic oceanic surface circulation within the Rheic Ocean have thus far been made through the application of general oceanic theory in schematic reconstructions. This study was aimed at testing several published schematic reconstructions through numerical modelling, thereby increasing the understanding of the Rheic Ocean surface circulation. A numerical ocean model was constructing with the Princeton Ocean Model (POM). An additional aim of this study involved determining whether the model could be used to infer the position of peri-Gondwanan terranes and the paleoposition of Gondwana in the mid-Paleozoic. Experiments were carried out to test various aspects of three known controls on surface circulation, namely the paleogeography, wind stress, and Coriolis force. The experiments showed that the model was sensitive to wind stress, throughflow and bathymetry in particular. The resulting circulation patterns justify the depiction of certain oceanographic phenomena in the schematic reconstructions, such as a Western Boundary Current (WBC) and gyres. Higher velocities gave some indication of the position of Gondwana as well as the peri-Gondwanan terranes. The sensitivity of the model to bathymetry, however, makes it difficult to make directly correlate terrane orientation and Gondwanan paleoposition to an increase in velocity. We propose the model be further impr
- Published
- 2019
5. Lack of lymphangiogenesis during breast carcinogenesis
- Author
-
Vleugel, M M, Bos, R, van der Groep, P, Greijer, A E, Shvarts, A, Stel, H V, van der Wall, E, and van Diest, P J
- Published
- 2004
6. Guided by light: Optical control of microtubule gliding assays
- Author
-
Tas, Roderick P. (author), Chen, Chiung Yi (author), Katrukha, Eugene A. (author), Vleugel, M. (author), Kok, M.W.A. (author), Dogterom, A.M. (author), Akhmanova, Anna (author), Kapitein, Lukas C. (author), Tas, Roderick P. (author), Chen, Chiung Yi (author), Katrukha, Eugene A. (author), Vleugel, M. (author), Kok, M.W.A. (author), Dogterom, A.M. (author), Akhmanova, Anna (author), and Kapitein, Lukas C. (author)
- Abstract
Force generation by molecular motors drives biological processes such as asymmetric cell division and cell migration. Microtubule gliding assays in which surface-immobilized motor proteins drive microtubule propulsion are widely used to study basic motor properties as well as the collective behavior of active self-organized systems. Additionally, these assays can be employed for nanotechnological applications such as analyte detection, biocomputation, and mechanical sensing. While such assays allow tight control over the experimental conditions, spatiotemporal control of force generation has remained underdeveloped. Here we use light-inducible protein-protein interactions to recruit molecular motors to the surface to control microtubule gliding activity in vitro. We show that using these light-inducible interactions, proteins can be recruited to the surface in patterns, reaching a â5-fold enrichment within 6 s upon illumination. Subsequently, proteins are released with a half-life of 13 s when the illumination is stopped. We furthermore demonstrate that light-controlled kinesin recruitment results in reversible activation of microtubule gliding along the surface, enabling efficient control over local microtubule motility. Our approach to locally control force generation offers a way to study the effects of nonuniform pulling forces on different microtubule arrays and also provides novel strategies for local control in nanotechnological applications., BN/Marileen Dogterom Lab, BN/Bionanoscience
- Published
- 2018
- Full Text
- View/download PDF
7. Understanding force-generating microtubule systems through in vitro reconstitution
- Author
-
Vleugel, M. (author), Kok, M.W.A. (author), Dogterom, A.M. (author), Vleugel, M. (author), Kok, M.W.A. (author), and Dogterom, A.M. (author)
- Abstract
Microtubules switch between growing and shrinking states, a feature known as dynamic instability. The biochemical parameters underlying dynamic instability are modulated by a wide variety of microtubule-associated proteins that enable the strict control of microtubule dynamics in cells. The forces generated by controlled growth and shrinkage of microtubules drive a large range of processes, including organelle positioning, mitotic spindle assembly, and chromosome segregation. In the past decade, our understanding of microtubule dynamics and microtubule force generation has progressed significantly. Here, we review the microtubule-intrinsic process of dynamic instability, the effect of external factors on this process, and how the resulting forces act on various biological systems. Recently, reconstitution-based approaches have strongly benefited from extensive biochemical and biophysical characterization of individual components that are involved in regulating or transmitting microtubule-driven forces. We will focus on the current state of reconstituting increasingly complex biological systems and provide new directions for future developments., BN/Marileen Dogterom Lab, BN/Bionanoscience
- Published
- 2016
- Full Text
- View/download PDF
8. Reconstitution of basic mitotic spindles in spherical emulsion droplets
- Author
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Vleugel, M. (author), Roth, S.C.A. (author), Groenendijk, Celebrity F. (author), Dogterom, A.M. (author), Vleugel, M. (author), Roth, S.C.A. (author), Groenendijk, Celebrity F. (author), and Dogterom, A.M. (author)
- Abstract
Mitotic spindle assembly, positioning and orientation depend on the combined forces generated by microtubule dynamics, microtubule motor proteins and cross-linkers. Growing microtubules can generate pushing forces, while depolymerizing microtubules can convert the energy from microtubule shrinkage into pulling forces, when attached, for example, to cortical dynein or chromosomes. In addition, motor proteins and diffusible cross-linkers within the spindle contribute to spindle architecture by connecting and sliding anti-parallel microtubules. In vivo, it has proven difficult to unravel the relative contribution of individual players to the overall balance of forces. Here we present the methods that we recently developed in our efforts to reconstitute basic mitotic spindles bottom-up in vitro. Using microfluidic techniques, centrosomes and tubulin are encapsulated in water-in-oil emulsion droplets, leading to the formation of geometrically confined (double) microtubule asters. By additionally introducing cortically anchored dynein, plus-end directed microtubule motors and diffusible cross-linkers, this system is used to reconstitute spindle-like structures. The methods presented here provide a starting point for reconstitution of more complete mitotic spindles, allowing for a detailed study of the contribution of each individual component, and for obtaining an integrated quantitative view of the force-balance within the mitotic spindle., BN/Marileen Dogterom Lab, BN/Bionanoscience
- Published
- 2016
- Full Text
- View/download PDF
9. A molecular basis for the differential roles of Bub1 and BubR1 in the spindle assembly checkpoint
- Author
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Overlack, K, Primorac, I, Vleugel, M, Krenn, V, Maffini, S, Hoffmann, I, Kops, G, Musacchio, A, Overlack, Katharina, Primorac, Ivana, Vleugel, Mathijs, Krenn, Veronica, Maffini, Stefano, Hoffmann, Ingrid, Kops, Geert J P L, Musacchio, Andrea, Overlack, K, Primorac, I, Vleugel, M, Krenn, V, Maffini, S, Hoffmann, I, Kops, G, Musacchio, A, Overlack, Katharina, Primorac, Ivana, Vleugel, Mathijs, Krenn, Veronica, Maffini, Stefano, Hoffmann, Ingrid, Kops, Geert J P L, and Musacchio, Andrea
- Abstract
The spindle assembly checkpoint (SAC) monitors and promotes kinetochoremicrotubule attachment during mitosis. Bubl and BubRl, SAC components, originated from duplication of an ancestor gene. Subsequent subfunctionalization established subordination: Bubl, recruited first to kinetochores, promotes successive BubRl recruitment. Because both Bubl and BubRl hetero- dimerize with Bub3, a targeting adaptor for phosphorylated kinetochores, the molecular basis for such sub-functionalization is unclear. We demonstrate that Bubl, but not BubRl, enhances binding of Bub3 to phosphorylated kinetochores. Grafting a short motif of Bubl onto BubRl promotes Bubl-independent kinetochore recruitment of BubRl. Such gain-of-function BubRl mutant cannot sustain a functional checkpoint. We demonstrate that kinetochore localization of BubRl relies on direct hetero-dimerization with Bubl at a pseudo-symmetric interface. Such pseudo-symmetric interaction underpins a template-copy relationship crucial for kinetochore-microtubule attachment and SAC signaling. Our results illustrate how gene duplication and sub-functionalization shape the workings of an essential molecular network.
- Published
- 2015
10. Evolution and regulation of mitotic checkpoint protein recruitment by the kinetochore scaffold KNL1
- Author
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Kops, G.J.P.L., Vleugel, M., Kops, G.J.P.L., and Vleugel, M.
- Published
- 2014
11. The vertebrate mitotic checkpoint protein BUBR1 is an unusual pseudokinase.
- Author
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Suijkerbuijk, S.J., Dam, T.J.P. van, Karagoz, G.E., Castelmur, E. von, Hubner, N.C., Duarte, A.M., Vleugel, M., Perrakis, A., Rudiger, S.G., Snel, B., Kops, G.J., Suijkerbuijk, S.J., Dam, T.J.P. van, Karagoz, G.E., Castelmur, E. von, Hubner, N.C., Duarte, A.M., Vleugel, M., Perrakis, A., Rudiger, S.G., Snel, B., and Kops, G.J.
- Abstract
Item does not contain fulltext, Chromosomal stability is safeguarded by a mitotic checkpoint, of which BUB1 and Mad3/BUBR1 are core components. These paralogs have similar, but not identical, domain organization. We show that Mad3/BUBR1 and BUB1 paralogous pairs arose by nine independent gene duplications throughout evolution, followed by parallel subfunctionalization in which preservation of the ancestral, amino-terminal KEN box or kinase domain was mutually exclusive. In one exception, vertebrate BUBR1-defined by the KEN box-preserved the kinase domain but allowed nonconserved degeneration of catalytic motifs. Although BUBR1 evolved to a typical pseudokinase in some vertebrates, it retained the catalytic triad in humans. However, we show that putative catalysis by human BUBR1 is dispensable for error-free chromosome segregation. Instead, residues that interact with ATP in conventional kinases are essential for conformational stability in BUBR1. We propose that parallel evolution of BUBR1 orthologs rendered its kinase function dispensable in vertebrates, producing an unusual, triad-containing pseudokinase.
- Published
- 2012
12. p300 and p53 levels determine activation of HIF-1 downstream targets in invasive breast cancer☆
- Author
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VLEUGEL, M, primary, SHVARTS, D, additional, VANDERWALL, E, additional, and VANDIEST, P, additional
- Published
- 2006
- Full Text
- View/download PDF
13. A molecular basis for the differential roles of Bub1 and BubR1 in the spindle assembly checkpoint
- Author
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Ingrid Hoffmann, Stefano Maffini, Mathijs Vleugel, Andrea Musacchio, Katharina Overlack, Veronica Krenn, Ivana Primorac, Geert J. P. L. Kops, Overlack, K, Primorac, I, Vleugel, M, Krenn, V, Maffini, S, Hoffmann, I, Kops, G, and Musacchio, A
- Subjects
cell division ,Mad2 ,Gene duplication ,Amino Acid Motifs ,Cell Cycle Proteins ,Biochemistry ,Protein Structure, Secondary ,Divergence ,Escape from adaptive conflict ,Phosphorylation ,Biology (General) ,Kinetochores ,Mps1 ,Kinetochore ,General Neuroscience ,Sub-functionalization ,General Medicine ,Protein-Tyrosine Kinases ,Cell biology ,kinetochore ,Protein Transport ,Spindle checkpoint ,centromere ,Medicine ,cell cycle ,Bub1 ,Bub3 ,Biologie ,Reversine ,Research Article ,Protein Binding ,BubR1 ,Evolution ,QH301-705.5 ,BUB3 ,Science ,Molecular Sequence Data ,BUB1 ,Mitotic checkpoint ,CDC20 ,Protein Serine-Threonine Kinases ,Biology ,Models, Biological ,General Biochemistry, Genetics and Molecular Biology ,spindle assembly checkpoint ,Centromere ,Humans ,human ,Amino Acid Sequence ,Cdc20 ,Mitosis ,General Immunology and Microbiology ,Knl1 ,BIO/13 - BIOLOGIA APPLICATA ,Cell Biology ,Casc5 ,Mis12 ,M Phase Cell Cycle Checkpoints ,Mutant Proteins ,HeLa Cells ,KMN network - Abstract
The spindle assembly checkpoint (SAC) monitors and promotes kinetochore–microtubule attachment during mitosis. Bub1 and BubR1, SAC components, originated from duplication of an ancestor gene. Subsequent sub-functionalization established subordination: Bub1, recruited first to kinetochores, promotes successive BubR1 recruitment. Because both Bub1 and BubR1 hetero-dimerize with Bub3, a targeting adaptor for phosphorylated kinetochores, the molecular basis for such sub-functionalization is unclear. We demonstrate that Bub1, but not BubR1, enhances binding of Bub3 to phosphorylated kinetochores. Grafting a short motif of Bub1 onto BubR1 promotes Bub1-independent kinetochore recruitment of BubR1. This gain-of-function BubR1 mutant cannot sustain a functional checkpoint. We demonstrate that kinetochore localization of BubR1 relies on direct hetero-dimerization with Bub1 at a pseudo-symmetric interface. This pseudo-symmetric interaction underpins a template–copy relationship crucial for kinetochore–microtubule attachment and SAC signaling. Our results illustrate how gene duplication and sub-functionalization shape the workings of an essential molecular network. DOI: http://dx.doi.org/10.7554/eLife.05269.001, eLife digest The genetic material within our cells is arranged in structures called chromosomes. Before a cell divides it makes an accurate copy of all of its DNA. The genetic material then needs to be equally split so that both daughter cells have a complete set of chromosomes. As the cell prepares to divide, each chromosome—consisting of two identical sister chromatids—lines up on a structure known as the spindle, which is made of filaments called microtubules. Cells have a sophisticated safety mechanism known as the spindle assembly checkpoint to ensure that chromosomes have time to correctly line up on the spindle before the cell can divide. Once this checkpoint is satisfied, the microtubules pull the sister chromatids apart so that each daughter cell receives one chromatid from each pair. The microtubules attach to the chromosomes through a large protein complex known as the kinetochore that assembles on each sister chromatid. The spindle assembly checkpoint monitors the attachment of the kinetochores to the microtubules; and two proteins, called Bub1 and BubR1, play an essential role in this process. These proteins bind to another protein called Bub3 that is also part of the spindle assembly checkpoint. Although Bub1 and BubR1 are very similar, they do not appear to perform the same roles, but the precise molecular details of their differences remain unclear. In this study, Overlack, Primorac et al. studied Bub1 and BubR1 in human cells. The experiments show that Bub1 can be recruited to kinetochores in the absence of BubR1, but BubR1 will only move to kinetochores when Bub1 is present. Furthermore, BubR1 needs to bind to Bub1 directly to move to the kinetochores. Overlack, Primorac et al. also identified a region in Bub1 that binds to Bub3, and which is considerably different in BubR1. When this region of Bub1 was grafted into BubR1, the resulting protein was able to bind kinetochores even in the absence of Bub1. The genes that encode the Bub1 and BubR1 proteins originate from a single ancestor gene that was duplicated during evolution. Therefore, the findings of Overlack, Primorac et al. show how the duplication of a gene can be beneficial for cells by creating products that have different roles in cells. DOI: http://dx.doi.org/10.7554/eLife.05269.002
- Published
- 2015
14. Guided by Light: Optical Control of Microtubule Gliding Assays.
- Author
-
Tas RP, Chen CY, Katrukha EA, Vleugel M, Kok M, Dogterom M, Akhmanova A, and Kapitein LC
- Abstract
Force generation by molecular motors drives biological processes such as asymmetric cell division and cell migration. Microtubule gliding assays in which surface-immobilized motor proteins drive microtubule propulsion are widely used to study basic motor properties as well as the collective behavior of active self-organized systems. Additionally, these assays can be employed for nanotechnological applications such as analyte detection, biocomputation, and mechanical sensing. While such assays allow tight control over the experimental conditions, spatiotemporal control of force generation has remained underdeveloped. Here we use light-inducible protein-protein interactions to recruit molecular motors to the surface to control microtubule gliding activity in vitro. We show that using these light-inducible interactions, proteins can be recruited to the surface in patterns, reaching a ∼5-fold enrichment within 6 s upon illumination. Subsequently, proteins are released with a half-life of 13 s when the illumination is stopped. We furthermore demonstrate that light-controlled kinesin recruitment results in reversible activation of microtubule gliding along the surface, enabling efficient control over local microtubule motility. Our approach to locally control force generation offers a way to study the effects of nonuniform pulling forces on different microtubule arrays and also provides novel strategies for local control in nanotechnological applications.
- Published
- 2018
- Full Text
- View/download PDF
15. Inner centromere localization of the CPC maintains centromere cohesion and allows mitotic checkpoint silencing.
- Author
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Hengeveld RCC, Vromans MJM, Vleugel M, Hadders MA, and Lens SMA
- Subjects
- Anaphase, Cell Cycle Proteins metabolism, Chromatids metabolism, Chromosome Segregation, Chromosomes metabolism, Gene Silencing, HeLa Cells, Humans, M Phase Cell Cycle Checkpoints, Phosphorylation, RNA, Small Interfering metabolism, Spindle Apparatus metabolism, Aurora Kinase B metabolism, Centromere ultrastructure, Kinetochores metabolism, Microtubule-Associated Proteins metabolism, Microtubules metabolism, Mitosis
- Abstract
Faithful chromosome segregation during mitosis requires that the kinetochores of all sister chromatids become stably connected to microtubules derived from opposite spindle poles. How stable chromosome bi-orientation is accomplished and coordinated with anaphase onset remains incompletely understood. Here we show that stable chromosome bi-orientation requires inner centromere localization of the non-enzymatic subunits of the chromosomal passenger complex (CPC) to maintain centromeric cohesion. Precise inner centromere localization of the CPC appears less relevant for Aurora B-dependent resolution of erroneous kinetochore-microtubule (KT-MT) attachments and for the stabilization of bi-oriented KT-MT attachments once sister chromatid cohesion is preserved via knock-down of WAPL. However, Aurora B inner centromere localization is essential for mitotic checkpoint silencing to allow spatial separation from its kinetochore substrate KNL1. Our data infer that the CPC is localized at the inner centromere to sustain centromere cohesion on bi-oriented chromosomes and to coordinate mitotic checkpoint silencing with chromosome bi-orientation.
- Published
- 2017
- Full Text
- View/download PDF
16. Understanding force-generating microtubule systems through in vitro reconstitution.
- Author
-
Vleugel M, Kok M, and Dogterom M
- Subjects
- Animals, Biomechanical Phenomena, Humans, Models, Biological, Polymerization, Protein Binding, Tubulin chemistry, Tubulin metabolism, Microtubules metabolism
- Abstract
Microtubules switch between growing and shrinking states, a feature known as dynamic instability. The biochemical parameters underlying dynamic instability are modulated by a wide variety of microtubule-associated proteins that enable the strict control of microtubule dynamics in cells. The forces generated by controlled growth and shrinkage of microtubules drive a large range of processes, including organelle positioning, mitotic spindle assembly, and chromosome segregation. In the past decade, our understanding of microtubule dynamics and microtubule force generation has progressed significantly. Here, we review the microtubule-intrinsic process of dynamic instability, the effect of external factors on this process, and how the resulting forces act on various biological systems. Recently, reconstitution-based approaches have strongly benefited from extensive biochemical and biophysical characterization of individual components that are involved in regulating or transmitting microtubule-driven forces. We will focus on the current state of reconstituting increasingly complex biological systems and provide new directions for future developments.
- Published
- 2016
- Full Text
- View/download PDF
17. Reconstitution of Basic Mitotic Spindles in Spherical Emulsion Droplets.
- Author
-
Vleugel M, Roth S, Groenendijk CF, and Dogterom M
- Subjects
- Centrosome, Microtubules, Tubulin, Mitosis, Spindle Apparatus
- Abstract
Mitotic spindle assembly, positioning and orientation depend on the combined forces generated by microtubule dynamics, microtubule motor proteins and cross-linkers. Growing microtubules can generate pushing forces, while depolymerizing microtubules can convert the energy from microtubule shrinkage into pulling forces, when attached, for example, to cortical dynein or chromosomes. In addition, motor proteins and diffusible cross-linkers within the spindle contribute to spindle architecture by connecting and sliding anti-parallel microtubules. In vivo, it has proven difficult to unravel the relative contribution of individual players to the overall balance of forces. Here we present the methods that we recently developed in our efforts to reconstitute basic mitotic spindles bottom-up in vitro. Using microfluidic techniques, centrosomes and tubulin are encapsulated in water-in-oil emulsion droplets, leading to the formation of geometrically confined (double) microtubule asters. By additionally introducing cortically anchored dynein, plus-end directed microtubule motors and diffusible cross-linkers, this system is used to reconstitute spindle-like structures. The methods presented here provide a starting point for reconstitution of more complete mitotic spindles, allowing for a detailed study of the contribution of each individual component, and for obtaining an integrated quantitative view of the force-balance within the mitotic spindle.
- Published
- 2016
- Full Text
- View/download PDF
18. Dissecting the roles of human BUB1 in the spindle assembly checkpoint.
- Author
-
Vleugel M, Hoek TA, Tromer E, Sliedrecht T, Groenewold V, Omerzu M, and Kops GJ
- Subjects
- Cdc20 Proteins metabolism, Cell Cycle Proteins genetics, Cell Cycle Proteins metabolism, Chromosome Segregation genetics, Humans, Kinetochores metabolism, Mitosis genetics, Nuclear Proteins genetics, Poly-ADP-Ribose Binding Proteins, Protein Serine-Threonine Kinases metabolism, Spindle Apparatus genetics, Cdc20 Proteins genetics, M Phase Cell Cycle Checkpoints genetics, Protein Serine-Threonine Kinases genetics
- Abstract
Mitotic chromosome segregation is initiated by the anaphase promoting complex/cyclosome (APC/C) and its co-activator CDC20 (forming APC/C(CDC20)). APC/C(CDC20) is inhibited by the spindle assembly checkpoint (SAC) when chromosomes have not attached to spindle microtubules. Unattached kinetochores catalyze the formation of a diffusible APC/C(CDC20) inhibitor that comprises BUBR1 (also known as BUB1B), BUB3, MAD2 (also known as MAD2L1) and a second molecule of CDC20. Recruitment of these proteins to the kinetochore, as well as SAC activation, rely on the mitotic kinase BUB1, but the molecular mechanism by which BUB1 accomplishes this in human cells is unknown. We show that kinetochore recruitment of BUBR1 and BUB3 by BUB1 is dispensable for SAC activation. Unlike its yeast and nematode orthologs, human BUB1 does not associate stably with the MAD2 activator MAD1 (also known as MAD1L1) and, although required for accelerating the loading of MAD1 onto kinetochores, BUB1 is dispensable for the maintenance of steady-state levels of MAD1 there. Instead, we identify a 50-amino-acid segment that harbors the recently reported ABBA motif close to a KEN box as being crucial for the role of BUB1 in SAC signaling. The presence of this segment correlates with SAC activity and efficient binding of CDC20 but not of MAD1 to kinetochores., (© 2015. Published by The Company of Biologists Ltd.)
- Published
- 2015
- Full Text
- View/download PDF
19. Sequential multisite phospho-regulation of KNL1-BUB3 interfaces at mitotic kinetochores.
- Author
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Vleugel M, Omerzu M, Groenewold V, Hadders MA, Lens SMA, and Kops GJPL
- Subjects
- Amino Acid Motifs genetics, Amino Acid Sequence, Cell Cycle Proteins chemistry, Cell Cycle Proteins genetics, HeLa Cells, Humans, Immunoblotting, Kinetochores drug effects, M Phase Cell Cycle Checkpoints genetics, Microtubule-Associated Proteins genetics, Models, Molecular, Molecular Sequence Data, Mutation, Nocodazole pharmacology, Phosphorylation, Poly-ADP-Ribose Binding Proteins, Protein Binding, Protein Serine-Threonine Kinases genetics, Protein Structure, Tertiary, Protein-Tyrosine Kinases genetics, Protein-Tyrosine Kinases metabolism, RNA Interference, Repetitive Sequences, Amino Acid genetics, Sequence Homology, Amino Acid, Time-Lapse Imaging, Tubulin Modulators pharmacology, Cell Cycle Proteins metabolism, Kinetochores metabolism, Microtubule-Associated Proteins metabolism, Mitosis, Protein Serine-Threonine Kinases metabolism
- Abstract
Regulated recruitment of the kinase-adaptor complex BUB1/BUB3 to kinetochores is crucial for correcting faulty chromosome-spindle attachments and for spindle assembly checkpoint (SAC) signaling. BUB1/BUB3 localizes to kinetochores by binding phosphorylated MELT motifs (MELpT) in the kinetochore scaffold KNL1. Human KNL1 has 19 repeats that contain a MELT-like sequence. The repeats are, however, larger than MELT, and repeat sequences can vary significantly. Using systematic screening, we show that only a limited number of repeats is "active." Repeat activity correlates with the presence of a vertebrate-specific SHT motif C-terminal to the MELT sequence. SHT motifs are phosphorylated by MPS1 in a manner that requires prior phosphorylation of MELT. Phospho-SHT (SHpT) synergizes with MELpT in BUB3/BUB1 binding in vitro and in cells, and human BUB3 mutated in a predicted SHpT-binding surface cannot localize to kinetochores. Our data show sequential multisite regulation of the KNL1-BUB1/BUB3 interaction and provide mechanistic insight into evolution of the KNL1-BUB3 interface., (Copyright © 2015 Elsevier Inc. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
20. A molecular basis for the differential roles of Bub1 and BubR1 in the spindle assembly checkpoint.
- Author
-
Overlack K, Primorac I, Vleugel M, Krenn V, Maffini S, Hoffmann I, Kops GJ, and Musacchio A
- Subjects
- Amino Acid Motifs, Amino Acid Sequence, Cell Cycle Proteins metabolism, HeLa Cells, Humans, Kinetochores metabolism, M Phase Cell Cycle Checkpoints, Models, Biological, Molecular Sequence Data, Mutant Proteins chemistry, Mutant Proteins metabolism, Phosphorylation, Protein Binding, Protein Serine-Threonine Kinases chemistry, Protein Structure, Secondary, Protein Transport, Protein-Tyrosine Kinases metabolism, Protein Serine-Threonine Kinases metabolism
- Abstract
The spindle assembly checkpoint (SAC) monitors and promotes kinetochore-microtubule attachment during mitosis. Bub1 and BubR1, SAC components, originated from duplication of an ancestor gene. Subsequent sub-functionalization established subordination: Bub1, recruited first to kinetochores, promotes successive BubR1 recruitment. Because both Bub1 and BubR1 hetero-dimerize with Bub3, a targeting adaptor for phosphorylated kinetochores, the molecular basis for such sub-functionalization is unclear. We demonstrate that Bub1, but not BubR1, enhances binding of Bub3 to phosphorylated kinetochores. Grafting a short motif of Bub1 onto BubR1 promotes Bub1-independent kinetochore recruitment of BubR1. This gain-of-function BubR1 mutant cannot sustain a functional checkpoint. We demonstrate that kinetochore localization of BubR1 relies on direct hetero-dimerization with Bub1 at a pseudo-symmetric interface. This pseudo-symmetric interaction underpins a template-copy relationship crucial for kinetochore-microtubule attachment and SAC signaling. Our results illustrate how gene duplication and sub-functionalization shape the workings of an essential molecular network.
- Published
- 2015
- Full Text
- View/download PDF
21. Mineralisation and primary biodegradation of aromatic organophosphorus flame retardants in activated sludge.
- Author
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Jurgens SS, Helmus R, Waaijers SL, Uittenbogaard D, Dunnebier D, Vleugel M, Kraak MH, de Voogt P, and Parsons JR
- Subjects
- Biodegradation, Environmental, Carbon Dioxide analysis, Carbon Dioxide metabolism, Chromatography, Gas, Chromatography, High Pressure Liquid, Organophosphates chemistry, Organophosphates metabolism, Organophosphorus Compounds chemistry, Tandem Mass Spectrometry, Flame Retardants metabolism, Organophosphorus Compounds metabolism, Sewage chemistry, Sewage microbiology
- Abstract
Halogen-free flame retardants (HFFRs), such as the aromatic organophosphorus flame retardants (OPFRs) triphenyl phosphate (TPHP), resorcinol bis(diphenylphosphate) (PBDPP) and bisphenol A bis(diphenylphosphate) (BPA-BDPP) have been proposed as potential replacements for brominated flame retardants in polymers and textiles. Although these OPFRs are already marketed, their environmental fate and effects are poorly characterised. The aim of this study was therefore to determine the mineralisation and primary biodegradation of these OPFRs by activated sludge. Mineralisation was monitored by measuring CO2 production by means of GC analysis, whereas primary biodegradation was monitored by LC-MS/MS analysis of the OPFRs and their potential metabolites. TPHP was biodegraded and mineralised most rapidly and achieved the requirement for ready biodegradability (60% of theoretical maximum mineralisation). Primary biodegradation was also rapid for PBDPP, but 60% mineralisation was not achieved within the time of the test, suggesting that transformation products of PBDPP may accumulate. Primary degradation of BPA-BDPP was very slow and very low CO2 production was also observed. Based on these results, TPHP and to a lesser extent PBDPP appear to be suitable replacements for the more environmentally persistent brominated flame retardants., (Copyright © 2014 Elsevier Ltd. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
22. Arrayed BUB recruitment modules in the kinetochore scaffold KNL1 promote accurate chromosome segregation.
- Author
-
Vleugel M, Tromer E, Omerzu M, Groenewold V, Nijenhuis W, Snel B, and Kops GJ
- Subjects
- Amino Acid Motifs, Amino Acid Sequence, Cell Cycle Checkpoints, Humans, Kinetochores ultrastructure, Microtubule-Associated Proteins chemistry, Microtubule-Associated Proteins genetics, Molecular Sequence Data, Protein Serine-Threonine Kinases genetics, Protein Serine-Threonine Kinases metabolism, Protein Serine-Threonine Kinases physiology, Sequence Alignment, Chromosome Segregation physiology, Kinetochores metabolism, Microtubule-Associated Proteins physiology
- Abstract
Fidelity of chromosome segregation relies on coordination of chromosome biorientation and the spindle checkpoint. Central to this is the kinetochore scaffold KNL1 that integrates the functions of various mitotic regulators including BUB1 and BUBR1. We show that KNL1 contains an extensive array of short linear sequence modules that encompass TxxΩ and MELT motifs and that can independently localize BUB1. Engineered KNL1 variants with few modules recruit low levels of BUB1 to kinetochores but support a robust checkpoint. Increasing numbers of modules concomitantly increase kinetochore BUB1 levels and progressively enhance efficiency of chromosome biorientation. Remarkably, normal KNL1 function is maintained by replacing all modules with a short array of naturally occurring or identical, artificially designed ones. A minimal array of generic BUB recruitment modules in KNL1 thus suffices for accurate chromosome segregation. Widespread divergence in the amount and sequence of these modules in KNL1 homologues may represent flexibility in adapting regulation of mitotic processes to altered requirements for chromosome segregation during evolution.
- Published
- 2013
- Full Text
- View/download PDF
23. A TPR domain-containing N-terminal module of MPS1 is required for its kinetochore localization by Aurora B.
- Author
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Nijenhuis W, von Castelmur E, Littler D, De Marco V, Tromer E, Vleugel M, van Osch MH, Snel B, Perrakis A, and Kops GJ
- Subjects
- Amino Acid Sequence, Aurora Kinase B, Aurora Kinases, Cell Cycle Checkpoints, Conserved Sequence, Crystallography, X-Ray, Cytoskeletal Proteins, Evolution, Molecular, HeLa Cells, Humans, Microtubules metabolism, Mitosis, Molecular Sequence Data, Nuclear Proteins chemistry, Nuclear Proteins metabolism, Protein Binding, Protein Structure, Secondary, Protein Structure, Tertiary, Protein Transport, Structure-Activity Relationship, Cell Cycle Proteins chemistry, Cell Cycle Proteins metabolism, Kinetochores metabolism, Protein Serine-Threonine Kinases chemistry, Protein Serine-Threonine Kinases metabolism, Protein-Tyrosine Kinases chemistry, Protein-Tyrosine Kinases metabolism
- Abstract
The mitotic checkpoint ensures correct chromosome segregation by delaying cell cycle progression until all kinetochores have attached to the mitotic spindle. In this paper, we show that the mitotic checkpoint kinase MPS1 contains an N-terminal localization module, organized in an N-terminal extension (NTE) and a tetratricopeptide repeat (TPR) domain, for which we have determined the crystal structure. Although the module was necessary for kinetochore localization of MPS1 and essential for the mitotic checkpoint, the predominant kinetochore binding activity resided within the NTE. MPS1 localization further required HEC1 and Aurora B activity. We show that MPS1 localization to kinetochores depended on the calponin homology domain of HEC1 but not on Aurora B-dependent phosphorylation of the HEC1 tail. Rather, the TPR domain was the critical mediator of Aurora B control over MPS1 localization, as its deletion rendered MPS1 localization insensitive to Aurora B inhibition. These data are consistent with a model in which Aurora B activity relieves a TPR-dependent inhibitory constraint on MPS1 localization.
- Published
- 2013
- Full Text
- View/download PDF
24. Integration of kinase and phosphatase activities by BUBR1 ensures formation of stable kinetochore-microtubule attachments.
- Author
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Suijkerbuijk SJ, Vleugel M, Teixeira A, and Kops GJ
- Subjects
- Aurora Kinase B, Aurora Kinases, HEK293 Cells, HeLa Cells, Humans, Phosphorylation, Tumor Cells, Cultured, Polo-Like Kinase 1, Cell Cycle Proteins metabolism, Kinetochores metabolism, Microtubules metabolism, Protein Phosphatase 2 metabolism, Protein Serine-Threonine Kinases metabolism, Proto-Oncogene Proteins metabolism
- Abstract
Maintenance of chromosomal stability depends on error-free chromosome segregation. The pseudokinase BUBR1 is essential for this, because it is a core component of the mitotic checkpoint and is required for formation of stable kinetochore-microtubule attachments. We have identified a conserved and highly phosphorylated domain (KARD) in BUBR1 that is crucial for formation of kinetochore-microtubule attachments. Deletion of this domain or prevention of its phosphorylation abolishes formation of kinetochore microtubules, which can be reverted by inhibiting Aurora B activity. Phosphorylation of KARD by PLK1 promotes direct interaction of BUBR1 with the PP2A-B56α phosphatase that counters excessive Aurora B activity at kinetochores. As a result, removal of BUBR1 from mitotic cells or inhibition of PLK1 reduces PP2A-B56α kinetochore binding and elevates phosphorylation of Aurora B substrates on the outer kinetochore. We propose that PLK1 and BUBR1 cooperate to stabilize kinetochore-microtubule interactions by regulating PP2A-B56α-mediated dephosphorylation of Aurora B substrates at the kinetochore-microtubule interface., (Copyright © 2012 Elsevier Inc. All rights reserved.)
- Published
- 2012
- Full Text
- View/download PDF
25. Mps1 promotes rapid centromere accumulation of Aurora B.
- Author
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van der Waal MS, Saurin AT, Vromans MJ, Vleugel M, Wurzenberger C, Gerlich DW, Medema RH, Kops GJ, and Lens SM
- Subjects
- Aurora Kinase B, Aurora Kinases, HeLa Cells, Histones metabolism, Humans, Intracellular Signaling Peptides and Proteins metabolism, Mitosis, Phosphorylation, Cell Cycle Proteins metabolism, Kinetochores enzymology, Protein Serine-Threonine Kinases metabolism, Protein-Tyrosine Kinases metabolism
- Abstract
Aurora B localization to mitotic centromeres, which is required for proper chromosome alignment during mitosis, relies on Haspin-dependent histone H3 phosphorylation and on Bub1-dependent histone H2A phosphorylation--which interacts with Borealin through a Shugoshin (Sgo) intermediate. We demonstrate that Mps1 stimulates the latter recruitment axis. Mps1 activity enhances H2A-T120ph and is critical for Sgo1 recruitment to centromeres, thereby promoting Aurora B centromere recruitment in early mitosis. Importantly, chromosome biorientation defects caused by Mps1 inhibition are improved by restoring Aurora B centromere recruitment. As Mps1 kinetochore localization reciprocally depends on Aurora B, we propose that this Aurora B-Mps1 recruitment circuitry cooperates with the Aurora B-Haspin feedback loop to ensure rapid centromere accumulation of Aurora B at the onset of mitosis.
- Published
- 2012
- Full Text
- View/download PDF
26. Evolution and function of the mitotic checkpoint.
- Author
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Vleugel M, Hoogendoorn E, Snel B, and Kops GJ
- Subjects
- Animals, Biocatalysis, Humans, Signal Transduction, Ubiquitination, Evolution, Molecular, M Phase Cell Cycle Checkpoints
- Abstract
The mitotic checkpoint evolved to prevent cell division when chromosomes have not established connections with the chromosome segregation machinery. Many of the fundamental molecular principles that underlie the checkpoint, its spatiotemporal activation, and its timely inactivation have been uncovered. Most of these are conserved in eukaryotes, but important differences between species exist. Here we review current concepts of mitotic checkpoint activation and silencing. Guided by studies in model organisms and our phylogenomics analysis of checkpoint constituents and their functional domains and motifs, we highlight ancient and taxa-specific aspects of the core checkpoint modules in the context of mitotic checkpoint function., (Copyright © 2012 Elsevier Inc. All rights reserved.)
- Published
- 2012
- Full Text
- View/download PDF
27. The vertebrate mitotic checkpoint protein BUBR1 is an unusual pseudokinase.
- Author
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Suijkerbuijk SJ, van Dam TJ, Karagöz GE, von Castelmur E, Hubner NC, Duarte AM, Vleugel M, Perrakis A, Rüdiger SG, Snel B, and Kops GJ
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Biological Evolution, Chromosome Segregation, Gene Duplication, Humans, Lizards, Molecular Sequence Data, Mutation, Protein Conformation, Protein Serine-Threonine Kinases genetics, Sequence Alignment, Zebrafish Proteins genetics, M Phase Cell Cycle Checkpoints, Protein Serine-Threonine Kinases metabolism
- Abstract
Chromosomal stability is safeguarded by a mitotic checkpoint, of which BUB1 and Mad3/BUBR1 are core components. These paralogs have similar, but not identical, domain organization. We show that Mad3/BUBR1 and BUB1 paralogous pairs arose by nine independent gene duplications throughout evolution, followed by parallel subfunctionalization in which preservation of the ancestral, amino-terminal KEN box or kinase domain was mutually exclusive. In one exception, vertebrate BUBR1-defined by the KEN box-preserved the kinase domain but allowed nonconserved degeneration of catalytic motifs. Although BUBR1 evolved to a typical pseudokinase in some vertebrates, it retained the catalytic triad in humans. However, we show that putative catalysis by human BUBR1 is dispensable for error-free chromosome segregation. Instead, residues that interact with ATP in conventional kinases are essential for conformational stability in BUBR1. We propose that parallel evolution of BUBR1 orthologs rendered its kinase function dispensable in vertebrates, producing an unusual, triad-containing pseudokinase., (Copyright © 2012 Elsevier Inc. All rights reserved.)
- Published
- 2012
- Full Text
- View/download PDF
28. Aurora B phosphorylates spatially distinct targets to differentially regulate the kinetochore-microtubule interface.
- Author
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Welburn JP, Vleugel M, Liu D, Yates JR 3rd, Lampson MA, Fukagawa T, and Cheeseman IM
- Subjects
- Animals, Aurora Kinase B, Aurora Kinases, Biosensing Techniques, Caenorhabditis elegans Proteins metabolism, Chickens, Fluorescence Resonance Energy Transfer, HeLa Cells, Humans, Kinetochores drug effects, Microtubule-Associated Proteins genetics, Microtubules drug effects, Mutation, Phosphorylation, Protein Kinase Inhibitors pharmacology, Protein Serine-Threonine Kinases antagonists & inhibitors, Protein Serine-Threonine Kinases genetics, Recombinant Fusion Proteins metabolism, Time Factors, Transduction, Genetic, Tubulin Modulators pharmacology, Chromosome Segregation drug effects, Kinetochores metabolism, Microtubule-Associated Proteins metabolism, Microtubules metabolism, Protein Serine-Threonine Kinases metabolism
- Abstract
Accurate chromosome segregation requires carefully regulated interactions between kinetochores and microtubules, but how plasticity is achieved to correct diverse attachment defects remains unclear. Here we demonstrate that Aurora B kinase phosphorylates three spatially distinct targets within the conserved outer kinetochore KNL1/Mis12 complex/Ndc80 complex (KMN) network, the key player in kinetochore-microtubule attachments. The combinatorial phosphorylation of the KMN network generates graded levels of microtubule-binding activity, with full phosphorylation severely compromising microtubule binding. Altering the phosphorylation state of each protein causes corresponding chromosome segregation defects. Importantly, the spatial distribution of these targets along the kinetochore axis leads to their differential phosphorylation in response to changes in tension and attachment state. In total, rather than generating exclusively binary changes in microtubule binding, our results suggest a mechanism for the tension-dependent fine-tuning of kinetochore-microtubule interactions., (Copyright (c) 2010 Elsevier Inc. All rights reserved.)
- Published
- 2010
- Full Text
- View/download PDF
29. Regulated targeting of protein phosphatase 1 to the outer kinetochore by KNL1 opposes Aurora B kinase.
- Author
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Liu D, Vleugel M, Backer CB, Hori T, Fukagawa T, Cheeseman IM, and Lampson MA
- Subjects
- Amino Acid Motifs genetics, Amino Acid Sequence, Aurora Kinase B, Aurora Kinases, Conserved Sequence, HeLa Cells, Humans, Microtubule-Associated Proteins genetics, Phosphorylation, Recombinant Proteins genetics, Recombinant Proteins metabolism, Sequence Alignment, Microtubule-Associated Proteins metabolism, Protein Phosphatase 1 metabolism, Protein Serine-Threonine Kinases metabolism
- Abstract
Regulated interactions between kinetochores and spindle microtubules are essential to maintain genomic stability during chromosome segregation. The Aurora B kinase phosphorylates kinetochore substrates to destabilize kinetochore-microtubule interactions and eliminate incorrect attachments. These substrates must be dephosphorylated to stabilize correct attachments, but how opposing kinase and phosphatase activities are coordinated at the kinetochore is unknown. Here, we demonstrate that a conserved motif in the kinetochore protein KNL1 directly interacts with and targets protein phosphatase 1 (PP1) to the outer kinetochore. PP1 recruitment by KNL1 is required to dephosphorylate Aurora B substrates at kinetochores and stabilize microtubule attachments. PP1 levels at kinetochores are regulated and inversely proportional to local Aurora B activity. Indeed, we demonstrate that phosphorylation of KNL1 by Aurora B disrupts the KNL1-PP1 interaction. In total, our results support a positive feedback mechanism by which Aurora B activity at kinetochores not only targets substrates directly, but also prevents localization of the opposing phosphatase.
- Published
- 2010
- Full Text
- View/download PDF
30. A unique residue in rab3c determines the interaction with novel binding protein Zwint-1.
- Author
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van Vlijmen T, Vleugel M, Evers M, Mohammed S, Wulf PS, Heck AJ, Hoogenraad CC, and van der Sluijs P
- Subjects
- Amino Acid Sequence, Animals, COS Cells, Chlorocebus aethiops, Conserved Sequence, Hippocampus cytology, Hippocampus metabolism, Mice, Molecular Sequence Data, Neurons metabolism, Rats, Serine genetics, Synaptosomal-Associated Protein 25 metabolism, rab3 GTP-Binding Proteins genetics, Intracellular Signaling Peptides and Proteins metabolism, Kinetochores metabolism, Nuclear Proteins metabolism, Serine metabolism, rab3 GTP-Binding Proteins metabolism
- Abstract
Exocytic events are tightly regulated cellular processes in which rab GTPases and their interacting proteins perform an important function. We set out to identify new binding partners of rab3, which mediates regulated secretion events in specialized cells. We discovered Zwint-1 as a rab3 specific binding protein that bound preferentially to rab3c. The interaction depends on a critical residue in rab3c that determines the binding efficiency of Zwint-1, which is immaterial for interaction with rabphilin3a. Rab3c and Zwint-1 are expressed highly in brain and colocalized extensively in primary hippocampal neurons. We also found that SNAP25 bound to the same region in Zwint-1 as rab3c, suggesting a new role for the kinetochore protein Zwint-1 in presynaptic events that are regulated by rab3 and SNAP25.
- Published
- 2008
- Full Text
- View/download PDF
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