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Electrons moving through chiral molecules are selected according to their spin orientation and the helicity of the molecule, an effect known as chiral induced spin selectivity (CISS). The underlying physical mechanism is not yet completely understood. To help elucidate this mechanism, a non-equilibrium Green’s function method, combined with a Landauer approach and density functional theory, is applied to carbon helices contacted by gold electrodes, resulting in spin polarization of transmitted electrons. Interestingly, spin polarization is also observed in the non-equilibrium electronic structure of the junctions. While this spin polarization is small, its sign changes with the direction of current and with the handedness of the molecule. While these calculations were performed with a pure exchange-correlation functional, previous studies suggest that computationally more expensive hybrid functionals may lead to considerably larger spin polarization in the electronic structure. Thus, nonequilibrium spin polarization could be a key component in understanding the CISS mechanism.

We report on the chemical design of chiral molecular junctions with stress-dependent conductance, whose helicity is maintained during the stretching of a single molecule junction due to the stapling of both ends of the inner helix. In the reported compounds, different conductive pathways are observed, with clearly different conductance values and plateau-length distributions, attributed to different conformations of the helical structures. The large chiro-optical responses and the potential use of these molecules as unimolecular spin filters have been theoretically proved using state-of-the-art Density Functional Theory (DFT) calculations, including a fully ab-initio estimation of the CISS-originating spin polarization which is done, for the first time, for a realistic molecular system, We thank the Spanish MICIN for the “María de Maeztu” Programme for Units of Excellence in R&D (grant No. CEX2018-000805-M). Financial support from MCIN/AEI/ 10.13039/501100011033 is acknowledged by L.A.Z. (grant PID2021-125604NB-I00), E. L. (PID2021-127964NB-C21), D. M. and J. M. C. (PID2020-113059GB-C21), A. M. (PID2021-127964NB-C22) and A. O. G. for her FPU contract (FPU16/02597). We also thank the Universidad Autónoma de Madrid and the Comunidad de Madrid (grants No. SI3/PJI/2021-00191, S2018/NMT-4321 through the Nanomag COST-CM Program and E.L. for Atracción de Talento grant 2019-T1/IND-16384). J. J. P. acknowledges financial support from Spanish MICINN (PID2019- 109539GB-C43) and the Generalitat Valenciana through Programa Prometeo/2021/01. This research was also funded by FEDER/Junta de Andalucía-Consejería de Economía y Conocimiento/P20 00162 and the Visiting Scholar Program in the University of Granada. IMDEA Nanociencia acknowleges support from the ’Severo Ochoa’ Programme for Center of Excelence in R&D (CEX2020-001039-S).

This review is an effort in putting together the latest results about room-temperature magnetoresistive (MR) effects in nanoscale/single-molecule electronic devices consisting of one (few) molecule(s) placed in electrical contact between two nanoscale electrodes. Molecules represent powerful building blocks for developing state-of-the-art MR devices, as they bring long spin relaxation timescales, low cost and high tunability of their electrical and magnetic properties via chemical modifications. The capability to control at room temperature and under bespoke electrodes’ magnetization the MR response of a single-molecule (SM) device has been a longstanding quest. Such SM platforms could serve as fundamental tools to understand what the main mechanistic ingredients of MR effects in a molecular device are, leading to their use as building-blocks for miniaturization in spintronic applications. The work carried out so far in this field has identified two key components directly involved in the MR response of a single(few)-molecule(s) device: (i) The molecule|electrode spinterface, defining the interplay between interfacial electrostatics and spin density, has been proven to play a fundamental role in the interpretation of the observed single-molecule junction's MR effects, which is governed by the electrode material and the electrode-molecule chemistry. (ii) Two aspects of the molecular structure have been demonstrated to be involved in the spin-dependent conduction mechanism: (1) the presence of paramagnetic metal centres in the molecular structure and how their orbitals bearing the unpaired electrons couple with the device electrodes, and (2), the degree of chirality within the molecular wire. This contribution will focus on the above points (i-ii) by making use of specific examples in the literature.

Electrons transported through a chiral molecule become spin-polarized; this phenomenon is known as chiral induced spin selectivity (CISS). It has implications for spintronics, for electrochemical and enantioselective reactions, and for electron transfer in biological systems. The CISS-induced spin polarization in simulations and in experiment differs by orders of magnitude, and the detailed underlying mechanism is still an open question. Structure-property relationships can help elucidate this question. For this purpose, the effect of helix pitch is studied for a model helix of 20 carbon atoms for two quantities that have been found to correlate in some experiments: spin-polarization in transmitted electrons and electronic circular dichroism (ECD). We find that even though the chirality of these model helices goes down with increased pitch, ECD and CISS go up, along with UV-Vis and magnetic and electric transition dipole moments. Orbital contributions to the most intense UV-Vis transition do not show a consistent qualitative picture. Tentatively, we can assign the increase in these properties to an increase of the electric polarizability with the spatial extension of these helices by changing pitch.

We thank the Ministerio de Economia y Competitividad (CTQ2017-85454-C2-1-P), Ministerio de Ciencia en Innovacion (PID2020-113059GB-C21) and Junta de Andalucia (P20_00162) (Spain) for funding and P. R. and A. O. G. also for FPU contracts. We also thank the UGR CSIRC for access to computational facilities. We also thank Big&Open Data Innovation Laboratory (BODaI-Lab), University of Brescia, granted by Fondazione Cariplo and Regione Lombardia, for access to resources of Computing Center CINECA (Bologna), Italy. Support from the Italian MIUR (grant N. 2017A4XRCA) is also acknowledged. VM acknowledges a Fellowship from Ikerbasque, the Basque Foundation for Science., A novel synthetic strategy based on a bifunctional stapled chiral nucleus from which segments of different lengths can be added to both ends of o-phenylene ethynylenes (o-OPEs) has been developed to obtain a new type of foldamer and a novel chiral Pd2L2 metallacycle. For the first time, an enantiopure fully conjugated helical foldamer having 14 phenyl rings and 13 alkynes is reported. The folded structure has four complete loops and is able to host three Ag(I) cations in their cavity with high binding constants. The complete photophysical and chiroptical (ECD, CPL and VCD) characterization of these foldamers has shown that these molecules show intense chiroptical responses with dissymmetry ratios in the range of 10−2. Theoretical modeling of these systems reveals the origin of these remarkable responses and points out a potential connection with the chiral induced spin selectivity (CISS) effect. The magnetic dipole moment is proposed as a key physical variable connecting the chiroptical properties and CISS-based spin filtering properties observed in chiral compounds., Ministerio de Economia y Competitividad (Spain) CTQ2017-85454-C2-1-P, Ministerio de Ciencia en Innovacion (Spain) PID2020-113059GB-C21, Junta de Andalucia European Commission P20_00162, Ministry of Education, Universities and Research (MIUR) 2017A4XRCA, Ikerbasque, the Basque Foundation for Science

The chiral-induced spin selectivity (CISS) effect, which describes the spin-filtering ability of diamagnetic structures like DNA or peptides having chiral symmetry, has emerged in the past years as the central mechanism behind a number of important phenomena, like long-range biological electron transfer, enantiospecific electrocatalysis, and molecular recognition. Also, CISS-induced spin polarization has a considerable promise for new spintronic devices and the design of quantum materials. The CISS effect is attributed to spin-orbit coupling, but a sound theoretical understanding of the surprising magnitude of this effect in molecules without heavy atoms is currently lacking. We are taking an essential step into this direction by analyzing the importance of imaginary terms in the Hamiltonian as a necessary condition for nonvanishing spin polarization in helical structures. On the basis of first-principles calculations and analytical considerations, we perform a symmetry analysis of the key quantities determining transport probabilities of electrons of different spin orientations. These imaginary terms originate from the spin-orbit coupling, and they preserve the Hermitian nature of the Hamiltonian. Hence, they are not related to the breaking of time-reversal symmetry resulting from the fact that molecules are open systems in a junction. Our symmetry analysis helps to identify essential constraints in the theoretical description of the CISS effect. We further draw an analogy with the appearance of imaginary terms in simple models of barrier scattering, which may help understanding the unusually effective long-range electron transfer in biological systems.

Carbon nanotubes (CNTs), helically wrapped with single-stranded DNA, have recently emerged as a spin-filtering material. The inversion asymmetric helical potential of DNA creates a spin-filtering effect (commonly known as "chirality-induced spin selectivity" or CISS), which polarizes carrier spins in the nanotube. Thus, tuning of the DNA-CNT interaction is expected to affect carrier spins in nanotubes. The CISS effect induces spin polarization, which is coupled with the carrier's momentum direction, and therefore, in one-dimensional systems, such as nanotubes, momentum flip must be accompanied by a simultaneous spin flip. This spin momentum locking can have a profound impact on charge transport in nanotubes as backscattering due to phonons and disorder will be suppressed as these mechanisms are spin-independent. Here, we report DNA-CNT spin filters in which CNTs have been functionalized with two different classes of sequences, exhibiting different degrees of interaction with the CNT. They induce different degrees of spin polarization in the channel, with significant impact on temperature-dependent charge transport and interference phenomena arising from carrier backscattering. This work raises the intriguing possibility of engineering charge transport in nanotubes

Experiments on spin transport through a chiral molecule demonstrated the attainment of significant spin polarization, demanding a theoretical explanation. We report the emergence of spin Fano resonances as a mechanism in the chiral-induced spin-selectivity (CISS) effect associated with transport through a chiral polyacetylene molecule. Initializing electrons through optical excitation, we derive the Fano resonance formula for the spin polarization. Computations reveal that quasidegeneracy is common in this complex molecular system. A remarkable phenomenon is the generation of pronounced spin Fano resonances due to the contributions of two near-degeneracy states. We also find that the Fano resonance width increases linearly with the coupling strength between the molecule and the lead. Our findings provide another mechanism to explain the experimental observations and lead to new insights into the role of the CISS effect in complex molecules from the perspective of transport and spin polarization resonance, paving the way for chiral molecule-based spintronics applications.

Chirality is a defining property of optically active molecules, i.e., those capable of having an asymmetric Raman response to circularly polarized light or rotating the plane defined by the two vec...

Spin-dependent effects in helical molecular systems, leading to the so-called chirality-induced spin selectivity (CISS) effect, have strongly attracted the attention of the chemical and physical community over the past few years. A large amount of experimental material has been collected so far, and different theoretical approaches have been presented to rationalize the CISS effect. The problem is, however, still a subject of debate. We present a semianalytical coarse-grained atomistic description of the electronic structure of a simple helical molecule, including spin-orbit interactions. For reference, we consider helicene, which is a pure carbon-based helical system with no chiral centers, and which has been previously shown experimentally to display a CISS effect. Our model exploits perturbation theory and a Lowdin-like partitioning to obtain an effective Hamiltonian, where all coupling coefficients depend on the helical geometry and predefined Slater-Koster parameters. As a result, they can be explicitly computed, thus providing physically meaningful orders of magnitude. We further discuss the conditions under which a nonvanishing spin polarization can be obtained in the model. We expect that our approach will serve to bridge the gap between purely phenomenological model Hamiltonians and more advanced first-principles methodologies.

A fundamental problem for thermal energy harvesting is the development of atomistic design strategies for smart nanodevices and nanomaterials that can be used to selectively transmit heat. We carry out here an extensive computational study demonstrating that heterogeneous molecular junctions, consisting of molecular wires bridging two different nanocontacts, can act as a selective phonon filter. The most important finding is the appearance of gaps on the phonon transmittance spectrum, which are strongly correlated to the properties of the vibrational spectrum of the specific molecular species in the junction. The filtering effect results from a delicate interplay between the intrinsic vibrational structure of the molecular chains and the different Debye cutoffs of the nanoscopic electrodes used as thermal baths.

Thermal management is a current global challenge that must be addressed exhaustively. We propose the design of a nanoscale phononic analog of the Ranque-Hilsch vortex tube in which heat flowing at a given temperature is split into two different streams going to the two ends of the device, inducing a temperature asymmetry. Our nanoscale prototype consists of two carbon nanotubes (capped and open) connected by molecular chains. The results show that the structural asymmetry in the contact regions is the key factor for producing the flux asymmetry and, hence, the induced temperature-bias effect. The effect can be controlled by tuning the thermal-equilibration temperature, the number of chains, and the chain length. Deposition on a substrate adds another variable to the manipulation of the flux asymmetry but the effect vanishes at very large substrate temperatures. Our study yields insights into the thermal management in nanoscale materials, especially the crucial issue of whether the thermal asymmetry can survive phonon scattering over relatively long distances, and thus provides a starting point for the design of a nanoscale phononic analog of the Ranque-Hilsch vortex tube.

A critical overview of the theory of the chirality-induced spin selectivity (CISS) effect, that is, phenomena in which the chirality of molecular species imparts significant spin selectivity to various electron processes, is provided. Based on discussions in a recently held workshop, and further work published since, the status of CISS effects—in electron transmission, electron transport, and chemical reactions—is reviewed. For each, a detailed discussion of the state-of-the-art in theoretical understanding is provided and remaining challenges and research opportunities are identified.

We have carried out a comprehensive study of the influence of electronic structure modeling and junction structure description on the first-principles calculation of the spin polarization in molecular junctions caused by the chiral induced spin selectivity (CISS) effect. We explore the limits and the sensitivity to modeling decisions of a Landauer/Green's function/two-component density functional theory approach to CISS. We find that although the CISS effect is entirely attributed in the literature to molecular spin filtering, spin-orbit coupling being partially inherited from the metal electrodes plays an important role in our calculations on ideal carbon helices, even though this effect cannot explain the experimental conductance results. Its magnitude depends considerably on the shape, size, and material of the metal clusters modeling the electrodes. Also, a pronounced dependence on the specific description of exchange interaction and spin-orbit coupling is manifest in our approach. This is important because the interplay between exchange effects and spin-orbit coupling may play an important role in the description of the junction magnetic response. Our calculations are relevant for the whole field of spin-polarized electron transport and electron transfer, because there is still an open discussion in the literature about the detailed underlying mechanism and the magnitude of physical parameters that need to be included to achieve a consistent description of the CISS effect: seemingly good quantitative agreement between simulation and the experiment can be caused by error compensation, because spin polarization as contained in a Landauer/Green's function/two-component density functional theory approach depends strongly on computational and structural parameters.

We report herein on a NMR-based enantiospecific response for a family of optically active metal-organic frameworks. Cross-polarization of the 1H-13C couple was performed, and the intensities of the 13C nuclei NMR signals were measured to be different for the two enantiomers. In a direct-pulse experiment, which prevents cross-polarization, the intensity difference of the 13C NMR signals of the two nanostructured enantiomers vanished. This result is due to changes of the nuclear spin relaxation times due to the electron spin spatial asymmetry induced by chemical bond polarization involving a chiral center. These experiments put forward on firm ground that the chiral-induced spin selectivity effect, which induces chemical bond polarization in the J-coupling, is the mechanism responsible for the enantiospecific response. The implications of this finding for the theory of this molecular electron spin polarization effect and the development of quantum biosensing and quantum storage devices are discussed.

The physical origin of the so-called chirality-induced spin selectivity (CISS) effect has puzzled experimental and theoretical researchers over the past few years. Early experiments were interpreted in terms of unconventional spin-orbit interactions mediated by the helical geometry. However, more recent experimental studies have clearly revealed that electronic exchange interactions also play a key role in the magnetic response of chiral molecules in singlet states. In this investigation, we use spin-polarized closed shell density functional theory calculations to address the influence of exchange contributions to the interaction between helical molecules as well as of helical molecules with magnetized substrates. We show that exchange effects result in differences in the interaction properties with magnetized surfaces, shedding light into the possible origin of two recent important experimental results: enantiomer separation and magnetic exchange force microscopy with AFM tips functionalized with helical peptides.

We have carried out a comprehensive study of the influence of electronic structure modeling and junction structure description on the first-principles calculation of the spin polarization in molecular junctions caused by the chiral induced spin selectivity (CISS) effect. We explore the limits and the sensitivity to modelling decisions of a Landauer / Green’s function / density functional theory approach to CISS. We find that although the CISS effect is entirely attributed in the literature to molecular spin filtering, spin-orbit coupling being partially inherited from the metal electrodes plays an important role in our calculations, even though this effect cannot explain the experi- mental conductance results. Also, an important dependence on the specific description of exchange interaction and spin–orbit coupling is manifest in our approach. This is important because the interplay between exchange effects and spin-orbit coupling may play an important role in the description of the junction magnetic response. Our calculations are relevant for the whole field of spin-polarized electron transport and electron transfer because there is still an open discussion in the literature about the detailed underlying mechanism and the magnitude of relevant physical parameters that need to be included to achieve a consistent description of the CISS effect

Electron transfer (ET) in biological molecules, such as peptides and proteins, consists of electrons moving between well-defined localized states (donors to acceptors) through a tunneling process. Here, we present an analytical model for ET by tunneling in DNA in the presence of spin-orbit (SO) interaction to produce a strong spin asymmetry with the intrinsic atomic SO strength in the meV range. We obtain a Hamiltonian consistent with charge transport through $\ensuremath{\pi}$ orbitals on the DNA bases and derive the behavior of ET as a function of the injection state momentum, the spin-orbit coupling, and barrier length and strength. Both tunneling energies, deep below the barrier and close to the barrier height, are considered. A highly consistent scenario arises where two concomitant mechanisms for spin selection arises; spin interference and differential spin amplitude decay. High spin filtering can take place at the cost of reduced amplitude transmission assuming realistic values for the SO coupling. The spin filtering scenario is completed by addressing the spin-dependent torque under the barrier with a consistent conserved definition for the spin current.

There is increasing interest in the study of chiral degrees of freedom occurring in matter and in electromagnetic fields. Opportunities in quantum sciences will likely exploit two main areas that are the focus of this Review: (1) recent observations of the chiral-induced spin selectivity (CISS) effect in chiral molecules and engineered nanomaterials and (2) rapidly evolving nanophotonic strategies designed to amplify chiral light-matter interactions. On the one hand, the CISS effect underpins the observation that charge transport through nanoscopic chiral structures favors a particular electronic spin orientation, resulting in large room-temperature spin polarizations. Observations of the CISS effect suggest opportunities for spin control and for the design and fabrication of room-temperature quantum devices from the bottom up, with atomic-scale precision and molecular modularity. On the other hand, chiral-optical effects that depend on both spin- and orbital-angular momentum of photons could offer key advantages in all-optical and quantum information technologies. In particular, amplification of these chiral light-matter interactions using rationally designed plasmonic and dielectric nanomaterials provide approaches to manipulate light intensity, polarization, and phase in confined nanoscale geometries. Any technology that relies on optimal charge transport, or optical control and readout, including quantum devices for logic, sensing, and storage, may benefit from chiral quantum properties. These properties can be theoretically and experimentally investigated from a quantum information perspective, which has not yet been fully developed. There are uncharted implications for the quantum sciences once chiral couplings can be engineered to control the storage, transduction, and manipulation of quantum information. This forward-looking Review provides a survey of the experimental and theoretical fundamentals of chiral-influenced quantum effects and presents a vision for their possible future roles in enabling room-temperature quantum technologies., ACS Nano, 16 (4), ISSN:1936-0851, ISSN:1936-086X

An enantiopure, conductive, and paramagnetic crystalline 3-D metal-organic framework (MOF), based on Dy(III) and the l-tartrate chiral ligand, is proved to behave as an almost ideal electron spin filtering material at room temperature, transmitting one spin component only, leading to a spin polarization (SP) power close to 100% in the ±2 V range, which is conserved over a long spatial range, larger than 1 μm in some cases. This impressive spin polarization capacity of this class of nanostructured materials is measured by means of magnetically polarized conductive atomic force microscopy and is attributed to the Chirality-Induced Spin Selectivity (CISS) effect of the material arising from a multidimensional helicity pattern, the inherited chirality of the organic motive, and the enhancing influence of Dy(III) ions on the CISS effect, with large spin-orbit coupling values. Our results represent the first example of a MOF-based and CISS-effect-mediated spin filtering material that shows a nearly perfect SP. These striking results obtained with our robust and easy-to-synthesize chiral MOFs constitute an important step forward in to improve the performance of spin filtering materials for spintronic device fabrication.

We use a nonlinear master equation formalism to account for thermal and disorder effects on spin-dependent electron transport in helical organic molecules coupled to two ideal leads. The inclusion of these two effects has important consequences in understanding the observed length and temperature dependence of spin polarization in experiments, which cannot be accounted for in a purely coherent tunneling model. Our approach considers a tight-binding helical Hamiltonian with disordered onsite energies to describe the resulting electronic states when low-frequency interacting modes break the electron coherence. The high-frequency fluctuating counterpart of these interactions, typical of intramolecular modes, is included by means of temperature-dependent thermally activated transfer probabilities in the master equation, which lead to hopping between localized states. We focus on the spin-dependent conductance and the spin-polarization in the linear regime (low voltage), which are analyzed as a function of the molecular length and the temperature of the system. Our results at room temperature agree well with experiments because our model predicts that the degree of spin-polarization increases for longer molecules. Also, this effect is temperature-dependent because thermal excitation competes with disorder-induced Anderson localization. We conclude that a transport mechanism based on thermally activated hopping in a disordered system can account for the unexpected behavior of the spin polarization.

Chirality-induced spin selectivity (CISS) is a recently discovered effect, whose precise microscopic origin has not yet been fully elucidated; it seems, however, clear that spin-orbit interaction plays a pivotal role. Various model Hamiltonian approaches have been proposed, suggesting a close connection between spin selectivity and filtering and helical symmetry. However, first-principles studies revealing the influence of chirality on the spin polarization are missing. To clearly demonstrate the influence of the helical conformation on the spin polarization properties, we have carried out spin-dependent Density-Functional Theory (DFT) based transport calculations for a model molecular system. It consists of α-helix and β-strand conformations of an oligo-glycine peptide, which is bonded to a nickel electrode and to a gold electrode in a two-terminal setup, similar to a molecular junction or a local probe, for example, in STM or AFM configurations. We have found that the α-helix conformation displays a spin polarization, calculated through the intrinsic magneto-resistance of the junction, about 100-1000 times larger than the linear β-strand, clearly demonstrating the crucial role played by the molecular helical geometry on the enhancement of spin polarization associated with the CISS effect.

International audience; Three Pd(II) phthalocyanine-carotenoid dyads featuring chromophores linked by amide bonds were prepared in order to investigate the rate of triplet-triplet (T-T) energy transfer from the tetrapyrrole to the covalently attached carotenoid as a function of the number of conjugated double bonds in the carotenoid. Carotenoids having 9, 10 and 11 conjugated double bonds were studied. Transient absorption measurements show that intersystem crossing in the Pd(II) phthalocyanine takes place in 10 ps in each case and that T-T energy transfer occurs in 126, 81 and 132 ps in the dyads bearing 9, 10 and 11 double bond carotenoids, respectively. To identify the origin of this variation in T-T energy transfer rates, density functional theory (DFT) was used to calculate the T-T electronic coupling in the three dyads. According to the calculations, the primary reason for the observed T-T energy transfer trend is larger T-T electronic coupling between the tetrapyrrole and the 10-double bond carotenoid. A methyl group adjacent to the amide linker that connects the Pd(II) phthalocyanine and the carotenoid in the 9 and 11-double bond carotenoids is absent in the 10-double bond carotenoid, and this difference alters its electronic structure to increase the coupling.

Extensive evidence has shown that long-range charge transport can occur along double helical DNA, but active control (switching) of single-DNA conductance with an external field has not yet been demonstrated. Here we demonstrate conductance switching in DNA by replacing a DNA base with a redox group. By applying an electrochemical (EC) gate voltage to the molecule, we switch the redox group between the oxidized and reduced states, leading to reversible switching of the DNA conductance between two discrete levels. We further show that monitoring the individual conductance switching allows the study of redox reaction kinetics and thermodynamics at single molecular level using DNA as a probe. Our theoretical calculations suggest that the switch is due to the change in the energy level alignment of the redox states relative to the Fermi level of the electrodes., Thanks to its base stacking structure, DNA can behave as an electric wire, but external control of its electronic properties has not been achieved yet. Here, the authors show that DNA conductance can be switched electrochemically when a DNA base is replaced by the redox molecule anthraquinone.

We describe a new electrochemical cycle that enables capture and release of carbon dioxide. The capture agent is benzylthiolate (RS–), generated electrochemically by reduction of benzyldisulfide (RSSR). Reaction of RS– with CO2 produces a terminal, sulfur-bound monothiocarbonate, RSCO2–, which acts as the CO2 carrier species, much the same as a carbamate serves as the CO2 carrier for amine-based capture strategies. Oxidation of the thiocarbonate releases CO2 and regenerates RSSR. The newly reported S-benzylthiocarbonate (IUPAC name benzylsulfanylformate) is characterized by 1H and 13C NMR, FTIR, and electrochemical analysis. The capture–release cycle is studied in the ionic liquid 1-butyl-1-methylpyrrolidinium bis(trifluoromethylsulfonyl)imide (BMP TFSI) and dimethylformamide. Quantum chemical calculations give a binding energy of CO2 to benzyl thiolate of −66.3 kJ mol–1, consistent with the experimental observation of formation of a stable CO2 adduct. The data described here represent the first report of...

The chiral-induced spin selectivity (CISS) effect, which describes the spin-filtering ability of diamagnetic structures like DNA or peptides having chiral symmetry, has emerged in the past years as the central mechanism behind a number of important phenomena, like long-range biological electron transfer, enantiospecific electrocatalysis, and molecular recognition. Also, CISS-induced spin polarization has a considerable promise for new spintronic devices and the design of quantum materials. The CISS effect is attributed to spin–orbit coupling, but a sound theoretical understanding of the surprising magnitude of this effect in molecules without heavy atoms is currently lacking. We are taking an essential step into this direction by analyzing the importance of imaginary terms in the Hamiltonian as a necessary condition for non-vanishing spin polarization in helical structures. Based on first-principles calculations and analytical considerations, we perform a symmetry analysis of the key quantities determining transport probabilities of electrons of different spin orientations. These imaginary terms originate from the spin–orbit coupling, and they preserve the Hermitian nature of the Hamiltonian. Hence, they are not related to the breaking of time-reversal symmetry resulting from the fact that molecules are open systems in a junction. Our symmetry analysis helps to identify essential constraints in the theoretical description of the CISS effect. We further draw an analogy with the appearance of imaginary terms in simple models of barrier scattering, which may help understanding the unusually effective long-range electron transfer in biological systems.

Molecular Dynamics (MD) simulations of standard systems of interacting particles ("atoms") give excellent agreement with the equipartition theorem for the average energy, but we find that these simulations exhibit finite-size effects in the dynamics that cause local fluctuations in energy to deviate significantly from the analogous energy fluctuation relation (EFR). The main conclusion of our study is that systems separated into nanometer-sized "blocks" inside much larger simulations exhibit excess fluctuations in potential energy (pe) that diverge inversely proportional to T in a manner that is strongly dependent on the range of interaction. Specifically, at low T with long-range interactions pe fluctuations exceed the EFR by at least an order of magnitude, dropping abruptly to below the EFR when interactions include only 1st-neighbor atoms. A simplistic model that includes 2nd-neighbor interactions matches the behavior of the excess pe fluctuations, but only if the 2nd-neighbor terms are not included in Boltzmann's factor, attributable to energy localization due to anharmonic effects. Characterizing energy correlations as a function of time and distance reveals that excess pe fluctuations in a block coincide with negative pe correlations between neighboring blocks, whereas reduced pe fluctuations coincide with positive pe correlations. Indeed, anomalous pe fluctuations in small systems at low T can be quantified by using the net energy in Boltzmann's factor that includes the pe from a surrounding shell of similarly small systems, or equivalently an effective local temperature. Our analysis elucidates the source of non-Boltzmann fluctuations, and the need to include mesoscopic thermal effects from the local environment for a consistent theoretical description of the equilibrium fluctuations in MD simulations of standard models with long-range interactions., 29 pages, 6 figures

International audience; We present an analytical model for the role of hydrogen bonding on the spin-orbit coupling of a model DNA molecule. Here, we analyze in detail the electric fields due to the polarization of the hydrogen bond on the DNA base pairs and derive, within a tight binding analytical band folding approach, an intrinsic Rashba coupling which should dictate the order of the spin active effects in the chiral-induced spin selectivity effect. The coupling found is ten times larger than the intrinsic coupling estimated previously and points out to the predominant role of hydrogen bonding in addition to chirality in the case of biological molecules. We expect similar dominant effects in oligopeptides, where the chiral structure is supported by hydrogen-bonding and bears on orbital carrying transport electrons.

Practical conversion of waste heat into electricity via thermoelectrochemical cells requires high Seebeck coefficient (α) to increase cycle efficiency. The complexation of Cu2+ species with dissolved multidentate ligands, such as ethylenediaminetetraacetic acid, and the control of dimerization equilibria with bridging ligands, such as 1,6-diaminohexane or 1,2-diaminoethane, dramatically improve, by up to ∼185%, the magnitude of the α of Cu/Cu2+ thermoelectrochemical cells. This results in the highest α for any Cu/Cu2+ redox system yet reported. The coefficient α is directly proportional to the change in entropy (ΔS). It was experimentally measured and correlated with ΔS obtained from quantum-chemical methods. This offers a deeper insight about a molecule-based interpretation of the macroscopic response. The agreement between the theoretically estimated and experimentally observed α is remarkable. Hence, we believe that this synergistic approach allows us to systematically scan different systems to obtain efficient thermoelectrochemical cells with enhanced Seebeck coefficient.

We explore a connection between the static molecular polarizability and the molecular conductance that arises naturally in the description of electrified molecular interfaces and that has recently been explored experimentally. We have tested this idea by using measured conductance of few different experimental design motifs for molecular junctions and relating them to the molecular polarizability. Our results show that for a family of structurally connected molecules the conductance decreases as the molecular polarizability increases. Within the limitations of our model, this striking result is consistent with the physically intuitive picture that a molecule in a junction behaves as a dielectric that is polarized by the applied bias, hence creating an interfacial barrier that hinders tunneling. The use of the polarizability as a descriptor of molecular conductance offers significant conceptual and practical advantages over a picture based on molecular orbitals. To further illustrate the plausibility of th...

The single-molecule conductance of hydrogen-bonded and alkane systems are compared in this theoretical investigation. The results indicate that for short chains, the H-bonded molecules exhibit larger conductance than the alkanes. Although earlier experimental investigations attributed this observation to a large density of states (DOS) corresponding to an occupied molecular orbital below the Fermi energy, the current work indicates the presence of a Fano resonance in the transmission function in the vicinity of the Fermi energy. The inclusion of this observation is essential in understanding the behavior of these systems. We also address the characteristics of the H-bond for transport and provide an explanation for the presence of a turnover regime wherein the conductance of the alkanes becomes larger than the H-bonded systems. Incidentally, this feature cannot be explained using a simple DOS argument.

We analyze the influence of electron-phonon (e-ph) interaction in a model for electron transfer (ET) processes in DNA in terms of the envelope function approach for spinless electrons. We are specifically concerned with the effect of e-ph interaction on the coherence of the ET process and how to model the interaction of DNA with phonon reservoirs of biological relevance. We assume that the electron bearing orbitals are half filled and derive the physics of e-ph coupling in the vicinity in reciprocal space. We find that at half filling, the acoustical modes are decoupled to ET at first order, while optical modes are predominant. The latter are associated with inter-strand vibrational modes in consistency with previous studies involving polaron models of ET. Coupling to acoustic modes depends on electron doping of DNA, while optical modes are always coupled within our model. Our results yield e-ph coupling consistent with estimates in the literature, and we conclude that large polarons are the main result of such e-ph interactions. This scenario will have strong consequences on decoherence of ET under physiological conditions due to relative isolation from thermal equilibration of the ET mechanism.

NMR-based techniques are supposed to be incapable of distinguishing pure crystalline chemical enantiomers. However, through systematic studies of cross-polarization magic angle spinning (CP-MAS) NMR in a series of amino acids, we have found a rather unexpected behavior in the intensity pattern of optical isomers in hydrogen/nitrogen nuclear polarization transfer that would allow the use of CP NMR as a nondestructive enantioselective detection technique. In all molecules considered, the d isomer yields higher intensity than the l form, while the chemical shift for all nuclei involved remains unchanged. We attribute this striking result to the onset of electron spin polarization, accompanying bond charge polarization through a chiral center, a secondary mechanism for polarization transfer that is triggered only in the CP experimental setup. Electron spin polarization is due to the chiral-induced spin selectivity effect (CISS), which creates an enantioselective response, analogous to the one involved in molecular recognition and enantiospecific separation with achiral magnetic substrates. This polarization influences the molecular magnetic environment, modifying the longitudinal relaxation time T1 of 1H, and ultimately provoking the observed asymmetry in the enantiomeric response.

We consider molecular straining as a probe to understand the mobility and spin active features of complex molecules. The strength of the spin-orbit interaction relevant to transport in a low dimensional structure depends critically on the relative geometrical arrangement of current-carrying orbitals. Understanding the origin of the enhanced spin-orbit interaction in chiral systems is crucial to be able to control the spin selectivity observed in the experiments, which is a hallmark of the Chiral-Induced Selectivity Effect (CISS). Recent tight-binding orbital models for spin transport in DNA-like molecules, have surmised that the band spin-orbit (SO) coupling arises from the particular angular relations between orbitals of neighboring bases on the helical chain. Such arrangements could be probed by straining the molecule in a conductive probe AFM/Break junction type setup, as was recently reported by Kiran, Cohen and Naaman. Here we report strain-dependent kinetic and SO coupling when a double-strand DNA model is compressed or stretched in two experimentally feasible setups with peculiar deformation properties. We find that the mobility and the SO coupling can be tuned appreciably by strain, and the analytical model bears out the qualitative trends of the experiments.

Nanoparticles coated with different kinds of molecules are currently designed and synthesized for several important applications, including catalysis, solar cells, and biomedical uses. A crucial molecular design variable is whether the nanoparticle exhibits plasmonic activity, e.g., the case of nanoparticles made of coinage metals, where no band gap is present, or if it rather behaves as a nano-semiconductor with a band gap, e.g., metal oxide nanoparticles. In this tutorial, we will discuss the literature for both plasmonic and non-plasmonic materials and our own recent theoretical and experimental work in two different showcases. First, we will present the example of using gold nanoparticles to monitor molecular sensing activity to follow changes in antibody/antigen binding through changes of the surface plasmon resonance (SPR) response. Second, we will discuss the case of surface-enhanced Raman resonance (SERS) in hybrid systems molecule-TiO2 nanoparticles and clusters, where the important physical quantity is the Raman signal to monitor the formation of chemical bonds and interfacial electron transfer processes.