85 results on '"Vitha S"'
Search Results
2. Activity of β-glucuronidase in Root Tips of Different Types of Transgenic Sugar Beet Plants
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Vitha, S., Phillips, J.P., Gartland, J.S., Gartland, K.M.A., Beneš, K., and Elliott, M.C.
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- 1997
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3. Central root cap cells are depleted of endoplasmic microtubules and actin microfilament bundles: implications for their role as gravity-sensing statocytes
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Baluška, F., Kreibaum, Alessandra, Vitha, S., Parker, Jill S., Barlow, P. W., and Sievers, A.
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- 1997
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4. Session 01 Cell structure and development
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De Agazio, M., Federico, R., Rea, E., Ciofi-Luzzatto, A., Zaccaria, M. L., Grego, S., Demchenko, N. P., Eleftheriou, E. P., Elliott, M. C., Fowler, M. R., Kirby, M., Scott, N. W., Slater, A., Gabarayeva, N. I., Gamalei, Y. V., Pakhomova, M. V., Sjutkina, A. V., Gazdová, B., Šlroký, J., Fajkus, J., Brzobohatý, B., Bezděk, M., Gottschalk, M., Schobert, C., Pecsvaradi, A., Leiker, G., Komor, E., Guralchuk, Zh. Z., Gurova, T. F., Hirsinger, C., Armentier, Y., Fleck, J., Jamet, E., Kharlamov, A. V., Kollmann, R., Koukalová, B., Kuhrová, V., Vyskot, B., Široký, J., Zapletalová, L., Kovařík, A., Holý, A., Bezděk, M., Kutík, J., Demmers-Derks, L., Lawlor, D. W., Nátr, L., Leitch, A. R., Glyn, M. C. P., Kingham, K., Machs, E. M., Grif, V. G., Matzke, A. J. M., Neuhuber, F., Park, Y. -D., Matzke, M. A., Miroslavov, E. A., Molas, J., Szymańska, M., Moore, I., Putnoky, I., Diefenthal, T., Staehelin, L. A., Schell, J., Palme, K., Petrov, I. A., Kurchiy, V. M., Porfirova, S. A., Kuznetsov, V. V., Ramsden, L., Szederkenyi, J., Shilova, N. V., Katomina, A. P., Sokolov, O. I., Gringauze, O. K., Richter, T. J., Sonesson, A., Widell, S., Tishchenko, E. N., Kuntsevitch, V. I., Bilinskaya, A. T., Vitha, S., Beneš, K., and Voznesenskaya, E. V.
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- 1994
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5. Quantitative β-glucuronidase assay in transgenic plants
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Vitha, S., Beneš, K., Michalová, M., and Ondřej, M.
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- 1993
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6. Interaction of root gravitropism and phototropism in Arabidopsis wild-type and starchless mutants
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Vitha, S, Zhao, L, and Sack, F. D
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Life Sciences (General) - Abstract
Root gravitropism in wild-type Arabidopsis and in two starchless mutants, pgm1-1 and adg1-1, was evaluated as a function of light position to determine the relative strengths of negative phototropism and of gravitropism and how much phototropism affects gravitropic measurements. Gravitropism was stronger than phototropism in some but not all light positions in wild-type roots grown for an extended period, indicating that the relationship between the two tropisms is more complex than previously reported. Root phototropism significantly influenced the time course of gravitropic curvature and the two measures of sensitivity. Light from above during horizontal exposure overestimated all three parameters for all three genotypes except the wild-type perception time. At the irradiance used (80 micromol m(-2) s(-1)), the shortest periods of illumination found to exaggerate gravitropism were 45 min of continuous illumination and 2-min doses of intermittent illumination. By growing roots in circumlateral light or by gravistimulating in the dark, corrected values were obtained for each gravitropic parameter. Roots of both starchless mutants were determined to be about three times less sensitive than prior estimates. This study demonstrates the importance of accounting for phototropism in the design of root gravitropism experiments in Arabidopsis.
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- 2000
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7. Light promotion of hypocotyl gravitropism of a starch-deficient tobacco mutant correlates with plastid enlargement and sedimentation
- Author
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Vitha, S, Yang, M, Kiss, J. Z, and Sack, F. D
- Subjects
Life Sciences (General) - Abstract
Dark-grown hypocotyls of a starch-deficient mutant (NS458) of tobacco (Nicotiana sylvestris) lack amyloplasts and plastid sedimentation, and have severely reduced gravitropism. However, gravitropism improved dramatically when NS458 seedlings were grown in the light. To determine the extent of this improvement and whether mutant hypocotyls contain sedimented amyloplasts, gravitropic sensitivity (induction time and intermittent stimulation) and plastid size and position in the endodermis were measured in seedlings grown for 8 d in the light. Light-grown NS458 hypocotyls were gravitropic but were less sensitive than the wild type (WT). Starch occupied 10% of the volume of NS458 plastids grown in both the light and the dark, whereas WT plastids were essentially filled with starch in both treatments. Light increased plastid size twice as much in the mutant as in the WT. Plastids in light-grown NS458 were sedimented, presumably because of their larger size and greater total starch content. The induction by light of plastid sedimentation in NS458 provides new evidence for the role of plastid mass and sedimentation in stem gravitropic sensing. Because the mutant is not as sensitive as the WT, NS458 plastids may not have sufficient mass to provide full gravitropic sensitivity.
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- 1998
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8. DMD CLINICAL THERAPIES II
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Mata Lopez, S., primary, Balog, C., additional, Vitha, S., additional, Bettis, M., additional, Barnett, H., additional, Kornegay, J., additional, and Nghiem, P., additional
- Published
- 2018
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9. First Structural Characterization of the Chloroplast Division Accessory Protein ARC6
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Sung, M.W., primary, Vitha, S., additional, and Holzenburg, A., additional
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- 2013
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10. Preserving Fluorescent Protein Signal after High Pressure Freezing and Freeze Substitution of Arabidopsis Leaf Tissue
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Johnson, C.B., primary, Smith, A., additional, Vitha, S., additional, and Holzenburg, A., additional
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- 2012
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11. Refining the role of ARC6-mediated anchoring of FtsZ assemblies using mobility studies
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Johnson, C.B., primary, Tang, L.K., additional, Smith, A.G., additional, Ravichandran, A., additional, Luo, Z., additional, Vitha, S., additional, and Holzenburg, A., additional
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- 2012
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12. Anchoring of FtsZ Assemblies to the Chloroplast Envelope: the Role of ARC6
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Johnson, C, primary, Ravichadran, A, additional, Smith, A, additional, Vitha, S, additional, and Holzenburg, A, additional
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- 2011
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13. 3D Confocal Imaging of Pollen
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Vitha, S, primary, Bryant, VM, additional, Zwa, A, additional, and Holzenburg, A, additional
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- 2009
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14. Arabidopsis Plastid Division Proteins FtsZ1 and FtsZ2: Macromolecular Assembly and Subunit Exchange Dynamics
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Johnson, CB, primary, Smith, AG, additional, Vitha, S, additional, and Holzenburg, A, additional
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- 2009
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15. Breaking Down Barriers: Using Microscopy to Demystify Science and Change Students’ Perspective of Their World
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Johnson, CB, primary, Smith, AG, additional, Vitha, S, additional, and Holzenburg, A, additional
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- 2008
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16. In Vitro Assembly of the Arabidopsis thaliana Plastid Division Proteins FtsZ1 and FtsZ2
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Smith, AG, primary, Johnson, CB, additional, Vitha, S, additional, and Holzenburg, A, additional
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- 2008
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17. Optimizing Confocal Imaging and FRAP Analysis of Biological Samples
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Vitha, S, primary, Evans, J, additional, Tao, X, additional, and Holzenburg, A, additional
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- 2007
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18. A Preliminary Study of the Relationship Between Herbivore Preference and the Anatomy and Morphology of Forage Sorghum Lines
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Pendleton, MW, primary, Ellis, EA, additional, Vitha, S, additional, Miller, FR, additional, and Pendleton, BB, additional
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- 2007
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19. Localization and Molecular Stoichiometry of Plastid Division Proteins FtsZ1 and FtsZ2
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Vitha, S, primary, McAndrew, RS, additional, Kadirjan-Kalbach, D, additional, Osteryoung, KW, additional, and Holzenburg, A, additional
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- 2006
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20. Assembly Dynamics of FtsZ and ARC6 Plastid-Dividing Proteins
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Vitha, S, primary, Holzenburg, A, additional, and Osteryoung, K W, additional
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- 2005
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21. Central root cap cells are depleted of endoplasmic microtubules and actin microfilament bundles: implications for their role as gravity-sensing statocytes
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Balu?ka, F., primary, Kreibaum, Alessandra, additional, Vitha, S., additional, Parker, Jill S., additional, Barlow, P. W., additional, and Sievers, A., additional
- Published
- 1997
- Full Text
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22. Session 01 Cell structure and development
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Agazio, M., primary, Federico, R., additional, Rea, E., additional, Ciofi-Luzzatto, A., additional, Zaccaria, M. L., additional, Grego, S., additional, Demchenko, N. P., additional, Eleftheriou, E. P., additional, Elliott, M. C., additional, Fowler, M. R., additional, Kirby, M., additional, Scott, N. W., additional, Slater, A., additional, Gabarayeva, N. I., additional, Gamalei, Y. V., additional, Pakhomova, M. V., additional, Sjutkina, A. V., additional, Gazdová, B., additional, Široký, J., additional, Fajkus, J., additional, Brzobohatý, B., additional, Bezděk, M., additional, Gottschalk, M., additional, Schobert, C., additional, Pecsvaradi, A., additional, Leiker, G., additional, Komor, E., additional, Guralchuk, Zh. Z., additional, Gurova, T. F., additional, Hirsinger, C., additional, Armentier, Y., additional, Fleck, J., additional, Jamet, E., additional, Kharlamov, A. V., additional, Kollmann, R., additional, Koukalová, B., additional, Kuhrová, V., additional, Vyskot, B., additional, Zapletalová, L., additional, Kovařík, A., additional, Holý, A., additional, Kutík, J., additional, Demmers-Derks, L., additional, Lawlor, D. W., additional, Nátr, L., additional, Leitch, A. R., additional, Glyn, M. C. P., additional, Kingham, K., additional, Machs, E. M., additional, Grif, V. G., additional, Matzke, A. J. M., additional, Neuhuber, F., additional, Park, Y. -D., additional, Matzke, M. A., additional, Miroslavov, E. A., additional, Molas, J., additional, Szymańska, M., additional, Moore, I., additional, Putnoky, I., additional, Diefenthal, T., additional, Staehelin, L. A., additional, Schell, J., additional, Palme, K., additional, Petrov, I. A., additional, Kurchiy, V. M., additional, Porfirova, S. A., additional, Kuznetsov, V. V., additional, Ramsden, L., additional, Szederkenyi, J., additional, Shilova, N. V., additional, Katomina, A. P., additional, Sokolov, O. I., additional, Gringauze, O. K., additional, Richter, T. J., additional, Sonesson, A., additional, Widell, S., additional, Tishchenko, E. N., additional, Kuntsevitch, V. I., additional, Bilinskaya, A. T., additional, Vitha, S., additional, Beneš, K., additional, and Voznesenskaya, E. V., additional
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- 1994
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23. Colocalization of plastid division proteins in the chloroplast stromal compartment establishes a new functional relationship between FtsZ1 and FtsZ2 in higher plants.
- Author
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McAndrew, R S, Froehlich, J E, Vitha, S, Stokes, K D, and Osteryoung, K W
- Abstract
Chloroplast division is driven by a macromolecular complex containing components that are positioned on the cytosolic surface of the outer envelope, the stromal surface of the inner envelope, and in the intermembrane space. The only constituents of the division apparatus identified thus far are the tubulin-like proteins FtsZ1 and FtsZ2, which colocalize to rings at the plastid division site. However, the precise positioning of these rings relative to the envelope membranes and to each other has not been previously defined. Using newly isolated cDNAs with open reading frames longer than those reported previously, we demonstrate here that both FtsZ2 proteins in Arabidopsis, like FtsZ1 proteins, contain cleavable transit peptides that target them across the outer envelope membrane. To determine their topological arrangement, protease protection experiments designed to distinguish between stromal and intermembrane space localization were performed on both in vitro imported and endogenous forms of FtsZ1 and FtsZ2. Both proteins were shown to reside in the stromal compartment of the chloroplast, indicating that the FtsZ1- and FtsZ2-containing rings have similar topologies and may physically interact. Consistent with this hypothesis, double immunofluorescence labeling of various plastid division mutants revealed precise colocalization of FtsZ1 and FtsZ2, even when their levels and assembly patterns were perturbed. Overexpression of FtsZ2 in transgenic Arabidopsis inhibited plastid division in a dose-dependent manner, suggesting that the stoichiometry between FtsZ1 and FtsZ2 is an important aspect of their function. These studies raise new questions concerning the functional and evolutionary significance of two distinct but colocalized forms of FtsZ in plants and establish a revised framework within which to understand the molecular architecture of the plastid division apparatus in higher plants.
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- 2001
24. Chloroplast division and morphology are differentially affected by overexpression of FtsZ1 and FtsZ2 genes in Arabidopsis.
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Stokes, K D, McAndrew, R S, Figueroa, R, Vitha, S, and Osteryoung, K W
- Abstract
In higher plants, two nuclear gene families, FtsZ1 and FtsZ2, encode homologs of the bacterial protein FtsZ, a key component of the prokaryotic cell division machinery. We previously demonstrated that members of both gene families are essential for plastid division, but are functionally distinct. To further explore differences between FtsZ1 and FtsZ2 proteins we investigated the phenotypes of transgenic plants overexpressing AtFtsZ1-1 or AtFtsZ2-1, Arabidopsis members of the FtsZ1 and FtsZ2 families, respectively. Increasing the level of AtFtsZ1-1 protein as little as 3-fold inhibited chloroplast division. Plants with the most severe plastid division defects had 13- to 26-fold increases in AtFtsZ1-1 levels over wild type, and some of these also exhibited a novel chloroplast morphology. Quantitative immunoblotting revealed a correlation between the degree of plastid division inhibition and the extent to which the AtFtsZ1-1 protein level was elevated. In contrast, expression of an AtFtsZ2-1 sense transgene had no obvious effect on plastid division or morphology, though AtFtsZ2-1 protein levels were elevated only slightly over wild-type levels. This may indicate that AtFtsZ2-1 accumulation is more tightly regulated than that of AtFtsZ1-1. Plants expressing the AtFtsZ2-1 transgene did accumulate a form of the protein smaller than those detected in wild-type plants. AtFtsZ2-1 levels were unaffected by increased or decreased accumulation of AtFtsZ1-1 and vice versa, suggesting that the levels of these two plastid division proteins are regulated independently. Taken together, our results provide additional evidence for the functional divergence of the FtsZ1 and FtsZ2 plant gene families.
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- 2000
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25. A PRELIMINARY STUDY OF THE RELATIONSHIP BETWEEN HERBIVORE PREFERENCE AND THE ANATOMY AND MORPHOLOGY OF FORAGE SORGHUM LINES.
- Author
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Pendleton, M. W., Ellis, E. A., Vitha, S., Miller, F. R., and Pendleton, B. B.
- Abstract
Field trials have determined that cattle have a preference for a specific sorghum line. Anatomical and morphological characteristics of the preferred sorghum line are compared to those of seven other lines. Leaf blade cross sections were fixed in 2.5% glutaraldehyde-1.0% acrolein in 0.1 M HEPES buffer (pH 7.2), and post fixed in buffered 1% osmium tetroxide. Specimens were dehydrated in a graded methanol series and infiltrated and embedded in a low viscosity epoxy resin. Thick sections (0.5-1.0 µm) were examined with a JEOL JSM-6400 SEM to observe leaf epicuticular wax platelet pattern and size. Sections (5 mm thick) of the leaf blade at approximately 1 cm above the sheath were made. Each section was passed through an alcohol series and 2 washes of hexamethyldisilazane. Dry samples were mounted on aluminum stubs, coated with gold-palladium, and observed by SEM. The mean proportion of xylem vessel diameter in relation to the diameter of the leaf blade was very high for the preferred line. This proportion may be related to soluble carbohydrate and starch levels. The concentration and average size of epicuticular wax platelets on the adaxial leaf surface was highest for the preferred sorghum line. Wax platelet size and concentration influence water permeability through the leaf cuticle. Soluble carbohydrate levels, starch levels and water permeability may influence cattle preference for sorghum lines. [ABSTRACT FROM AUTHOR]
- Published
- 2007
26. Developmental regulation and physical interaction among enzymes involved in sorgoleone biosynthesis.
- Author
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Maharjan B, Vitha S, and Okumoto S
- Subjects
- Lipids, Benzoquinones metabolism, Soil, Nitrates metabolism, Sorghum metabolism
- Abstract
Ammonium in the soil is converted into nitrate by nitrifying bacteria or archaea. While nitrate is readily available for plants, it is prone to leaching and contributes to eutrophication. In addition, when the soil conditions become anaerobic, nitrate can be reduced to nitrous oxide, a powerful greenhouse gas. Therefore, slowing nitrification in agricultural soil offers some benefits by reducing nitrogen loss and decreasing water and air pollution. Since nitrogen is a limiting nutrient for most ecological niches, many plants have evolved specialized compounds that reduce nitrification. One such compound, sorgoleone, which is secreted from the root hair of sorghum, has been relatively well studied due to its allelopathic function, with most enzymes involved in its biosynthesis elucidated. However, the secretion mechanisms remain unknown. Previous studies reported numerous lipidic vesicles in the sorghum root hair and speculated that they are involved in sorgoleone storage or secretion, but their roles remain unclear. Also, the subcellular organelles that are involved in sorgoleone synthesis have not been identified. In the present study, we found that the expression of sorgoleone biosynthesis enzymes is induced in a specific root zone, indicating that the secretion is developmentally regulated. The accumulation of internal vesicles preceded the peak of sorgoleone biosynthesis and secretion, indicating that the vesicles play a role in precursor storage rather than secretion. Moreover, our data suggest that enzymes that catalyze the first three steps, SbDES2, SbDES3, and SbARS1, interact with each other to form a multi-enzyme complex on the endoplasmic reticulum surface., (© 2023 The Authors. The Plant Journal published by Society for Experimental Biology and John Wiley & Sons Ltd.)
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- 2023
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27. Navigating the Light-Sheet Image Analysis Software Landscape: Concepts for Driving Cohesion From Data Acquisition to Analysis.
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Gibbs HC, Mota SM, Hart NA, Min SW, Vernino AO, Pritchard AL, Sen A, Vitha S, Sarasamma S, McIntosh AL, Yeh AT, Lekven AC, McCreedy DA, Maitland KC, and Perez LM
- Abstract
From the combined perspective of biologists, microscope instrumentation developers, imaging core facility scientists, and high performance computing experts, we discuss the challenges faced when selecting imaging and analysis tools in the field of light-sheet microscopy. Our goal is to provide a contextual framework of basic computing concepts that cell and developmental biologists can refer to when mapping the peculiarities of different light-sheet data to specific existing computing environments and image analysis pipelines. We provide our perspective on efficient processes for tool selection and review current hardware and software commonly used in light-sheet image analysis, as well as discuss what ideal tools for the future may look like., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Gibbs, Mota, Hart, Min, Vernino, Pritchard, Sen, Vitha, Sarasamma, McIntosh, Yeh, Lekven, McCreedy, Maitland and Perez.)
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- 2021
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28. Correction: Challenges associated with homologous directed repair using CRISPR-Cas9 and TALEN to edit the DMD genetic mutation in canine Duchenne muscular dystrophy.
- Author
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Mata López S, Balog-Alvarez C, Vitha S, Bettis AK, Canessa EH, Kornegay JN, and Nghiem PP
- Abstract
[This corrects the article DOI: 10.1371/journal.pone.0228072.].
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- 2020
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29. Creation and characterization of an immortalized canine myoblast cell line: Myok9.
- Author
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López SM, Balog-Alvarez C, Canessa EH, Hathout Y, Brown KJ, Vitha S, Bettis AK, Boehler J, Kornegay JN, and Nghiem PP
- Subjects
- Animals, Cell Differentiation physiology, Cell Line, Cell Proliferation physiology, Dogs, Muscles cytology, Polyomavirus Infections pathology, Simian virus 40 pathogenicity, Transfection methods, Myoblasts cytology
- Abstract
The availability of an in vitro canine cell line would reduce the need for dogs for primary in vitro cell culture and reduce overall cost in pre-clinical studies. An immortalized canine muscle cell line, named Myok9, from primary myoblasts of a normal dog has been developed by the authors. Immortalization was performed by SV40 viral transfection of the large T antigen into the primary muscle cells. Proliferation assays, growth curves, quantitative PCR, western blotting, mass spectrometry, and light microscopy were performed to characterize the MyoK9 cell line at different stages of growth and differentiation. The expression of muscle-related genes was determined to assess myogenic origin. Myok9 cells expressed dystrophin and other muscle-specific proteins during differentiation, as detected with mass spectrometry and western blotting. Using the Myok9 cell line, new therapies before moving to pre-clinical studies to enhance the number and speed of analyses and reduce the cost of early experimentation can be tested now. This cell line will be made available to the research community to further evaluate potential therapeutics.
- Published
- 2020
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30. Challenges associated with homologous directed repair using CRISPR-Cas9 and TALEN to edit the DMD genetic mutation in canine Duchenne muscular dystrophy.
- Author
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Mata López S, Balog-Alvarez C, Vitha S, Bettis AK, Canessa EH, Kornegay JN, and Nghiem PP
- Subjects
- Animals, CRISPR-Cas Systems genetics, Dogs, Mutation, Myoblasts cytology, Transcription Activator-Like Effector Nucleases genetics, Dystrophin genetics, Gene Editing methods, Genetic Therapy methods, Muscular Dystrophy, Duchenne genetics, Muscular Dystrophy, Duchenne therapy, Myoblasts metabolism
- Abstract
Duchenne muscular dystrophy (DMD) is caused by mutations in the DMD gene that abolish the expression of dystrophin protein. Dogs with the genetic homologue, golden retriever muscular dystrophy dog (GRMD), have a splice site mutation that leads to skipping of exon 7 and a stop codon in the DMD transcript. Gene editing via homology-directed repair (HDR) has been used in the mdx mouse model of DMD but not in GRMD. In this study, we used clustered regularly interspaced short palindromic repeats (CRISPR) and transcription activator-like effector nucleases (TALEN) to restore dystrophin expression via HDR in myoblasts/myotubes and later via intramuscular injection of GRMD dogs. In vitro, DNA and RNA were successfully corrected but dystrophin protein was not translated. With intramuscular injection of two different guide arms, sgRNA A and B, there was mRNA expression and Sanger sequencing confirmed inclusion of exon 7 for all treatments. On Western blot analysis, protein expression of up to 6% of normal levels was seen in two dogs injected with sgRNA B and up to 16% of normal in one dog treated with sgRNA A. TALEN did not restore any dystrophin expression. While there were no adverse effects, clear benefits were not seen on histopathologic analysis, immunofluorescence microscopy, and force measurements. Based on these results, methods must be modified to increase the efficiency of HDR-mediated gene repair and protein expression., Competing Interests: SML’s salary was funded by SOLID Biosciences. JNK is a paid consultant for Solid Biosciences. PPN is a scientific reviewer for AGADA Biosciences. The rest of the authors declare no conflicts of interest. This does not alter our adherence to PLOS ONE policies on sharing data and materials.
- Published
- 2020
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31. Broad-Spectrum Amino Acid Transporters ClAAP3 and ClAAP6 Expressed in Watermelon Fruits.
- Author
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Shi T, Joshi V, Joshi M, Vitha S, Gibbs H, Wang K, and Okumoto S
- Subjects
- Amino Acid Transport Systems genetics, Arginine genetics, Arginine metabolism, Citrulline genetics, Citrulline metabolism, Citrullus genetics, Fruit genetics, Plant Proteins genetics, Plants, Genetically Modified genetics, Plants, Genetically Modified metabolism, Substrate Specificity, Nicotiana genetics, Nicotiana metabolism, Amino Acid Transport Systems biosynthesis, Citrullus metabolism, Fruit metabolism, Plant Proteins biosynthesis
- Abstract
Watermelon fruit contains a high percentage of amino acid citrulline (Cit) and arginine (Arg). Cit and Arg accumulation in watermelon fruit are most likely mediated by both de novo synthesis from other amino acids within fruits and direct import from source tissues (leaves) through the phloem. The amino acid transporters involved in the import of Cit, Arg, and their precursors into developing fruits of watermelon have not been reported. In this study, we have compiled the list of putative amino acid transporters in watermelon and characterized transporters that are expressed in the early stage of fruit development. Using the yeast complementation study, we characterized ClAAP3 (Cla023187) and ClAAP6 (Cla023090) as functional amino acid transporters belonging to the family of amino acid permease (AAP) genes. The yeast growth and uptake assays of radiolabeled amino acid suggested that ClAAP3 and ClAAP6 can transport a broad spectrum of amino acids. Expression of translational fusion proteins with a GFP reporter in Nicotiana benthamiana leaves confirmed the ER- and plasma membrane-specific localization, suggesting the role of ClAAP proteins in the cellular import of amino acids. Based on the gene expression profiles and functional characterization, ClAAP3 and ClAAP6 are expected to play a major role in regulation of amino acid import into developing watermelon fruits.
- Published
- 2019
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32. Arabidopsis UMAMIT24 and 25 are amino acid exporters involved in seed loading.
- Author
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Besnard J, Zhao C, Avice JC, Vitha S, Hyodo A, Pilot G, and Okumoto S
- Subjects
- Arabidopsis embryology, Arabidopsis metabolism, Gene Expression Profiling, Seeds growth & development, Amino Acids metabolism, Arabidopsis genetics, Seeds metabolism
- Abstract
Phloem-derived amino acids are the major source of nitrogen supplied to developing seeds. Amino acid transfer from the maternal to the filial tissue requires at least one cellular export step from the maternal tissue prior to the import into the symplasmically isolated embryo. Some members of UMAMIT (usually multiple acids move in an out transporter) family (UMAMIT11, 14, 18, 28, and 29) have previously been implicated in this process. Here we show that additional members of the UMAMIT family, UMAMIT24 and UMAMIT25, also function in amino acid transfer in developing seeds. Using a recently published yeast-based assay allowing detection of amino acid secretion, we showed that UMAMIT24 and UMAMIT25 promote export of a broad range of amino acids in yeast. In plants, UMAMIT24 and UMAMIT25 are expressed in distinct tissues within developing seeds; UMAMIT24 is mainly expressed in the chalazal seed coat and localized on the tonoplast, whereas the plasma membrane-localized UMAMIT25 is expressed in endosperm cells. Seed amino acid contents of umamit24 and umamit25 knockout lines were both decreased during embryogenesis compared with the wild type, but recovered in the mature seeds without any deleterious effect on yield. The results suggest that UMAMIT24 and 25 play different roles in amino acid translocation from the maternal to filial tissue; UMAMIT24 could have a role in temporary storage of amino acids in the chalaza, while UMAMIT25 would mediate amino acid export from the endosperm, the last step before amino acids are taken up by the developing embryo.
- Published
- 2018
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33. Glucose Metabolism as a Pre-clinical Biomarker for the Golden Retriever Model of Duchenne Muscular Dystrophy.
- Author
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Schneider SM, Sridhar V, Bettis AK, Heath-Barnett H, Balog-Alvarez CJ, Guo LJ, Johnson R, Jaques S, Vitha S, Glowcwski AC, Kornegay JN, and Nghiem PP
- Subjects
- Animals, Biomarkers metabolism, Disease Models, Animal, Dogs, Fluorodeoxyglucose F18 chemistry, Gene Expression Profiling, Glucose Tolerance Test, Glucose Transporter Type 4 metabolism, Insulin metabolism, Muscle, Skeletal diagnostic imaging, Muscle, Skeletal metabolism, Muscular Dystrophy, Duchenne diagnostic imaging, Muscular Dystrophy, Duchenne genetics, Muscular Dystrophy, Duchenne pathology, Myocardium metabolism, Positron Emission Tomography Computed Tomography, RNA, Messenger genetics, RNA, Messenger metabolism, Dog Diseases metabolism, Glucose metabolism, Muscular Dystrophy, Duchenne metabolism
- Abstract
Purpose: Metabolic dysfunction in Duchenne muscular dystrophy (DMD) is characterized by reduced glycolytic and oxidative enzymes, decreased and abnormal mitochondria, decreased ATP, and increased oxidative stress. We analyzed glucose metabolism as a potential disease biomarker in the genetically homologous golden retriever muscular dystrophy (GRMD) dog with molecular, biochemical, and in vivo imaging., Procedures: Pelvic limb skeletal muscle and left ventricle tissue from the heart were analyzed by mRNA profiling, qPCR, western blotting, and immunofluorescence microscopy for the primary glucose transporter (GLUT4). Physiologic glucose handling was measured by fasting glucose tolerance test (GTT), insulin levels, and skeletal and cardiac positron emission tomography/X-ray computed tomography (PET/CT) using the glucose analog 2-deoxy-2-[
18 F]fluoro-D-glucose ([18 F]FDG)., Results: MRNA profiles showed decreased GLUT4 in the cranial sartorius (CS), vastus lateralis (VL), and long digital extensor (LDE) of GRMD vs. normal dogs. QPCR confirmed GLUT4 downregulation but increased hexokinase-1. GLUT4 protein levels were not different in the CS, VL, or left ventricle but increased in the LDE of GRMD vs. normal. Microscopy revealed diffuse membrane expression of GLUT4 in GRMD skeletal but not cardiac muscle. GTT showed higher basal glucose and insulin in GRMD but rapid tissue glucose uptake at 5 min post-dextrose injection in GRMD vs. normal/carrier dogs. PET/ CT with [18 F]FDG and simultaneous insulin stimulation showed a significant increase (p = 0.03) in mean standard uptake values (SUV) in GRMD skeletal muscle but not pelvic fat at 5 min post-[18 F]FDG /insulin injection. Conversely, mean cardiac SUV was lower in GRMD than carrier/normal (p < 0.01)., Conclusions: Altered glucose metabolism in skeletal and cardiac muscle of GRMD dogs can be monitored with molecular, biochemical, and in vivo imaging studies and potentially utilized as a biomarker for disease progression and therapeutic response.- Published
- 2018
- Full Text
- View/download PDF
34. The chloroplast division protein ARC6 acts to inhibit disassembly of GDP-bound FtsZ2.
- Author
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Sung MW, Shaik R, TerBush AD, Osteryoung KW, Vitha S, and Holzenburg A
- Subjects
- Arabidopsis Proteins genetics, Crystallography, X-Ray, Protein Conformation, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins metabolism, Arabidopsis metabolism, Arabidopsis Proteins antagonists & inhibitors, Arabidopsis Proteins chemistry, Arabidopsis Proteins metabolism, Chloroplasts metabolism, Guanosine Diphosphate metabolism
- Abstract
Chloroplasts host photosynthesis and fulfill other metabolic functions that are essential to plant life. They have to divide by binary fission to maintain their numbers throughout cycles of cell division. Chloroplast division is achieved by a complex ring-shaped division machinery located on both the inner (stromal) and the outer (cytosolic) side of the chloroplast envelope. The inner division ring (termed the Z ring) is formed by the assembly of tubulin-like FtsZ1 and FtsZ2 proteins. ARC6 is a key chloroplast division protein that interacts with the Z ring. ARC6 spans the inner envelope membrane, is known to stabilize or maintain the Z ring, and anchors the Z ring to the inner membrane through interaction with FtsZ2. The underlying mechanism of Z ring stabilization is not well-understood. Here, biochemical and structural characterization of ARC6 was conducted using light scattering, sedimentation, and light and transmission EM. The recombinant protein was purified as a dimer. The results indicated that a truncated form of ARC6 (tARC6), representing the stromal portion of ARC6, affects FtsZ2 assembly without forming higher-order structures and exerts its effect via FtsZ2 dynamics. tARC6 prevented GDP-induced FtsZ2 disassembly and caused a significant net increase in FtsZ2 assembly when GDP was present. Single particle analysis and 3D reconstruction were performed to elucidate the structural basis of ARC6 activity. Together, the data reveal that a dimeric form of tARC6 binds to FtsZ2 filaments and does not increase FtsZ polymerization rates but rather inhibits GDP-associated FtsZ2 disassembly., Competing Interests: The authors declare that they have no conflicts of interest with the contents of this article., (© 2018 by The American Society for Biochemistry and Molecular Biology, Inc.)
- Published
- 2018
- Full Text
- View/download PDF
35. Chloroplast division protein ARC3 acts on FtsZ2 by preventing filament bundling and enhancing GTPase activity.
- Author
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Shaik RS, Sung MW, Vitha S, and Holzenburg A
- Subjects
- Arabidopsis drug effects, Arabidopsis metabolism, Arabidopsis Proteins chemistry, Arabidopsis Proteins genetics, Bacterial Proteins genetics, Bacterial Proteins metabolism, Cell Division, Chloroplasts drug effects, Chloroplasts genetics, Chloroplasts ultrastructure, Cytoskeleton metabolism, Cytoskeleton ultrastructure, Eukaryotic Cells metabolism, Eukaryotic Cells ultrastructure, Guanosine Triphosphate analogs & derivatives, Guanosine Triphosphate pharmacology, Kinetics, Nuclear Proteins chemistry, Nuclear Proteins genetics, Nuclear Proteins metabolism, Pichia genetics, Pichia metabolism, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins metabolism, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae metabolism, Arabidopsis genetics, Arabidopsis Proteins metabolism, Chloroplasts metabolism, Gene Expression Regulation, Plant, Guanosine Triphosphate metabolism
- Abstract
Chloroplasts evolved from cyanobacterial endosymbiotic ancestors and their division is a complex process initiated by the assembly of cytoskeletal FtsZ ( F ilamentous t emperature s ensitive Z ) proteins into a ring structure at the division site (Z-ring). The cyanobacterial Z-ring positioning system (MinCDE proteins) is also conserved in chloroplasts, except that MinC was lost and replaced by the eukaryotic ARC3 (accumulation and replication of chloroplasts). Both MinC and ARC3 act as negative regulators of FtsZ assembly, but ARC3 bears little sequence similarity with MinC. Here, light scattering assays, co-sedimentation, GTPase assay and transmission electron microscopy in conjunction with single-particle analysis have been used to elucidate the structure of ARC3 and its effect on its main target in chloroplast division, FtsZ2. Analysis of FtsZ2 in vitro assembly reactions in the presence and absence of GMPCPP showed that ARC3 promotes FtsZ2 debundling and disassembly of existing filaments in a concentration-dependent manner and requires GTP hydrolysis. Three-dimensional reconstruction of ARC3 revealed an almost circular molecule in which the FtsZ-binding N-terminus and the C-terminal PARC6 (paralog of ARC6)-binding MORN (Membrane Occupation and Recognition Nexus) domain are in close proximity and suggest a model for PARC6-enabled binding of ARC3 to FtsZ2. The latter is corroborated by in vivo data., (© 2018 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.)
- Published
- 2018
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36. Introduction to Special Issue on Imaging of Plants and Fungi.
- Author
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Holzenburg A and Vitha S
- Subjects
- Fungi cytology, Fungi ultrastructure, Image Processing, Computer-Assisted methods, Optical Imaging methods, Plant Cells ultrastructure, Plants ultrastructure
- Published
- 2016
- Full Text
- View/download PDF
37. FtsZ1/FtsZ2 Turnover in Chloroplasts and the Role of ARC3.
- Author
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Johnson CB, Shaik R, Abdallah R, Vitha S, and Holzenburg A
- Subjects
- Arabidopsis metabolism, Fluorescence, Genes, Reporter, Image Processing, Computer-Assisted, Microscopy, Fluorescence, Staining and Labeling, Time Factors, Time-Lapse Imaging, Arabidopsis physiology, Arabidopsis Proteins metabolism, Chloroplast Proteins metabolism
- Abstract
Chloroplast division requires filamentation temperature-sensitive Z (FtsZ), a tubulin-like GTPase of cyanobacterial endosymbiotic origin. Plants and algae possess two distinct FtsZ protein families, FtsZ1 and FtsZ2 that co-assemble into a ring (Z-ring) at the division site. Z-ring assembly and disassembly and division site positioning is controlled by both positive and negative factors via their specific interactions with FtsZ1 and FtsZ2. Here we present the in planta analysis of Arabidopsis FtsZ1 and FtsZ2 turnover in the context of a native chloroplast division machinery. Fluorescence recovery after photobleaching analysis was conducted using fluorescently tagged FtsZ at wild-type (WT)-like levels. Rapid photobleaching, low signal-to-noise ratio, and phototropic movements of chloroplasts were overcome by (i) using progressive intervals in time-lapse imaging, (ii) analyzing epidermal rather than stromal chloroplasts, and (iii) employing image stack alignment during postprocessing. In plants of WT background, fluorescence recovery half-times averaged 117 and 325 s for FtsZ1 and FtsZ2, respectively. In plants lacking ARC3, the key negative regulator of FtsZ assembly, the turnover was threefold slower. The findings are discussed in the context of previous results conducted in a heterologous system.
- Published
- 2015
- Full Text
- View/download PDF
38. Cold Microwave-Enabled Protein Detection and Quantification.
- Author
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Grützner N, Heilmann RM, Smith AG, Johnson CB, Vitha S, Steiner JM, and Holzenburg AK
- Subjects
- Animals, Blotting, Western instrumentation, Electrophoresis, Polyacrylamide Gel methods, Enzyme-Linked Immunosorbent Assay instrumentation, Equipment Design, Humans, Immunoblotting instrumentation, Signal-To-Noise Ratio, Blotting, Western methods, Enzyme-Linked Immunosorbent Assay methods, Immunoblotting methods, Microwaves, Proteins analysis
- Abstract
Protein screening/detection is an essential tool in many laboratories. Owing to the relatively large time investments that are required by standard protocols, the development of methods with higher throughput while maintaining an at least comparable signal-to-noise ratio is highly beneficial in many research areas. This chapter describes how cold microwave technology can be used to enhance the rate of molecular interactions and provides protocols for dot blots, Western blots, and ELISA procedures permitting a completion of all incubation steps (blocking and antibody steps) within 24-45 min.
- Published
- 2015
- Full Text
- View/download PDF
39. Single particle tracking analysis of the chloroplast division protein FtsZ anchoring to the inner envelope membrane.
- Author
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Johnson CB, Tang LK, Smith AG, Ravichandran A, Luo Z, Vitha S, and Holzenburg A
- Subjects
- Arabidopsis, Genes, Reporter, Green Fluorescent Proteins analysis, Green Fluorescent Proteins genetics, Microscopy, Fluorescence, Protein Binding, Protein Interaction Mapping, Staining and Labeling methods, Arabidopsis Proteins metabolism, Chloroplast Proteins metabolism, Chloroplasts physiology, DNA Replication
- Abstract
Replication of chloroplast in plant cells is an essential process that requires co-assembly of the tubulin-like plastid division proteins FtsZ1 and FtsZ2 at mid-chloroplast to form a ring structure called the Z-ring. The Z-ring is stabilized via its interaction with the transmembrane protein ARC6 on the inner envelope membrane of chloroplasts. Plants lacking ARC6 are defective in plastid division and contain only one or two enlarged chloroplasts per cell with abnormal localization of FtsZ: instead of a single Z-ring, many short FtsZ filaments are distributed throughout the chloroplast. ARC6 is thought to be the anchoring point for FtsZ assemblies. To investigate the role of ARC6 in FtsZ anchoring, the mobility of green fluorescent protein-tagged FtsZ assemblies was assessed by single particle tracking in mutant plants lacking the ARC6 protein. Mean square displacement analysis showed that the mobility of FtsZ assemblies is to a large extent characterized by anomalous diffusion behavior (indicative of intermittent binding) and restricted diffusion suggesting that besides ARC6-mediated anchoring, an additional FtsZ-anchoring mechanism is present in chloroplasts.
- Published
- 2013
- Full Text
- View/download PDF
40. Colony organization in the green alga Botryococcus braunii (Race B) is specified by a complex extracellular matrix.
- Author
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Weiss TL, Roth R, Goodson C, Vitha S, Black I, Azadi P, Rusch J, Holzenburg A, Devarenne TP, and Goodenough U
- Subjects
- Arabinose analysis, Cell Communication, Cell Membrane, Cell Wall chemistry, Cell Wall ultrastructure, Chlorophyta chemistry, Chloroplasts, Cryoelectron Microscopy, Endoplasmic Reticulum, Galactose analysis, Golgi Apparatus, Hydrocarbons analysis, Lipids analysis, beta-Glucans analysis, Chlorophyta ultrastructure, Extracellular Matrix chemistry
- Abstract
Botryococcus braunii is a colonial green alga whose cells associate via a complex extracellular matrix (ECM) and produce prodigious amounts of liquid hydrocarbons that can be readily converted into conventional combustion engine fuels. We used quick-freeze deep-etch electron microscopy and biochemical/histochemical analysis to elucidate many new features of B. braunii cell/colony organization and composition. Intracellular lipid bodies associate with the chloroplast and endoplasmic reticulum (ER) but show no evidence of being secreted. The ER displays striking fenestrations and forms a continuous subcortical system in direct contact with the cell membrane. The ECM has three distinct components. (i) Each cell is surrounded by a fibrous β-1, 4- and/or β-1, 3-glucan-containing cell wall. (ii) The intracolonial ECM space is filled with a cross-linked hydrocarbon network permeated with liquid hydrocarbons. (iii) Colonies are enclosed in a retaining wall festooned with a fibrillar sheath dominated by arabinose-galactose polysaccharides, which sequesters ECM liquid hydrocarbons. Each cell apex associates with the retaining wall and contributes to its synthesis. Retaining-wall domains also form "drapes" between cells, with some folding in on themselves and penetrating the hydrocarbon interior of a mother colony, partitioning it into daughter colonies. We propose that retaining-wall components are synthesized in the apical Golgi apparatus, delivered to apical ER fenestrations, and assembled on the surfaces of apical cell walls, where a proteinaceous granular layer apparently participates in fibril morphogenesis. We further propose that hydrocarbons are produced by the nonapical ER, directly delivered to the contiguous cell membrane, and pass across the nonapical cell wall into the hydrocarbon-based ECM.
- Published
- 2012
- Full Text
- View/download PDF
41. Oligomerization of plant FtsZ1 and FtsZ2 plastid division proteins.
- Author
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Smith AG, Johnson CB, Vitha S, and Holzenburg A
- Subjects
- Arabidopsis chemistry, Arabidopsis ultrastructure, Arabidopsis Proteins ultrastructure, Dimerization, Imaging, Three-Dimensional, Microscopy, Electron, Transmission, Models, Molecular, Plastids chemistry, Protein Multimerization, Protein Structure, Quaternary, Arabidopsis Proteins chemistry
- Abstract
FtsZ was identified in bacteria as the first protein to localize mid-cell prior to division and homologs have been found in many plant species. Bacterial studies demonstrated that FtsZ forms a ring structure that is dynamically exchanged with a soluble pool of FtsZ. Our previous work established that Arabidopsis FtsZ1 and FtsZ2-1 are capable of in vitro self-assembly into two distinct filament types, termed type-I and type-II and noted the presence of filament precursor molecules which prompted this investigation. Using a combination of electron microscopy, gel chromatography and native PAGE revealed that (i) prior to FtsZ assembly initiation the pool consists solely of dimers and (ii) during assembly of the Arabidopsis FtsZ type-II filaments the most common intermediate between the dimer and filament state is a tetramer. Three-dimensional reconstructions of the observed dimer and tetramer suggest these oligomeric forms may represent consecutive steps in type-II filament assembly and a mechanism is proposed, which is expanded to include FtsZ assembly into type-I filaments. Finally, the results permit a discussion of the oligomeric nature of the soluble pool in plants., (Copyright © 2011 Elsevier Inc. All rights reserved.)
- Published
- 2011
- Full Text
- View/download PDF
42. Immunofluorescence microscopy for localization of Arabidopsis chloroplast proteins.
- Author
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Vitha S and Osteryoung KW
- Subjects
- Arabidopsis cytology, Cryoultramicrotomy, Fluorescent Antibody Technique, Image Processing, Computer-Assisted, Paraffin Embedding, Protein Transport, Staining and Labeling, Tissue Fixation, Arabidopsis metabolism, Arabidopsis Proteins metabolism, Chloroplast Proteins metabolism, Microscopy, Fluorescence methods
- Abstract
Immunofluorescence microscopy reveals localization of proteins in cells and tissues by means of highly specific, fluorescently labeled antibodies. This technique is an important complement to localization methods that use genetically encoded fluorescent tags. This chapter describes the five stages of immunofluorescence localization of proteins in plant chloroplasts in sectioned leaf tissue: (1) fixation, (2) tissue embedding and sectioning, (3) treatment of sections prior to immunolabeling, (4) immunostaining, and (5) fluorescence microscopy and image capture. Protocols for both cryosectioning and sectioning of low-melting-point wax-embedded samples are described. Immunofluorescence localization in chloroplasts is complicated by their intense autofluorescence background. Measures to suppress nonspecific background staining, confirm specificity of the fluorescence signal, and optimize imaging conditions are described.
- Published
- 2011
- Full Text
- View/download PDF
43. Raman spectroscopy analysis of botryococcene hydrocarbons from the green microalga Botryococcus braunii.
- Author
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Weiss TL, Chun HJ, Okada S, Vitha S, Holzenburg A, Laane J, and Devarenne TP
- Subjects
- Inclusion Bodies chemistry, Microalgae cytology, Molecular Structure, Squalene analysis, Hydrocarbons analysis, Microalgae chemistry, Spectrum Analysis, Raman methods
- Abstract
Botryococcus braunii, B race is a unique green microalga that produces large amounts of liquid hydrocarbons known as botryococcenes that can be used as a fuel for internal combustion engines. The simplest botryococcene (C(30)) is metabolized by methylation to give intermediates of C(31), C(32), C(33), and C(34), with C(34) being the predominant botryococcene in some strains. In the present work we have used Raman spectroscopy to characterize the structure of botryococcenes in an attempt to identify and localize botryococcenes within B. braunii cells. The spectral region from 1600-1700 cm(-1) showed ν(C=C) stretching bands specific for botryococcenes. Distinct botryococcene Raman bands at 1640 and 1647 cm(-1) were assigned to the stretching of the C=C bond in the botryococcene branch and the exomethylene C=C bonds produced by the methylations, respectively. A Raman band at 1670 cm(-1) was assigned to the backbone C=C bond stretching. Density function theory calculations were used to determine the Raman spectra of all botryococcenes to compare computed theoretical values with those observed. The analysis showed that the ν(C=C) stretching bands at 1647 and 1670 cm(-1) are actually composed of several closely spaced bands arising from the six individual C=C bonds in the molecule. We also used confocal Raman microspectroscopy to map the presence and location of methylated botryococcenes within a colony of B. braunii cells based on the methylation-specific 1647 cm(-1) botryococcene Raman shift.
- Published
- 2010
- Full Text
- View/download PDF
44. Micron-scale holes terminate the phage infection cycle.
- Author
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Dewey JS, Savva CG, White RL, Vitha S, Holzenburg A, and Young R
- Subjects
- Bacteriophage lambda genetics, Bacteriophage lambda physiology, Cryoelectron Microscopy, Endopeptidases genetics, Endopeptidases physiology, Escherichia coli ultrastructure, Genes, Viral, Viral Proteins genetics, Viral Proteins physiology, Bacteriophage lambda pathogenicity, Escherichia coli virology
- Abstract
Holins are small phage-encoded proteins that accumulate harmlessly in the cytoplasmic membrane during the infection cycle until suddenly, at an allele-specific time, triggering to form lethal lesions, or "holes." In the phages lambda and T4, the holes have been shown to be large enough to allow release of prefolded active endolysin from the cytoplasm, which results in destruction of the cell wall, followed by lysis within seconds. Here, the holes caused by S105, the lambda-holin, have been captured in vivo by cryo-EM. Surprisingly, the scale of the holes is at least an order of magnitude greater than any previously described membrane channel, with an average diameter of 340 nm and some exceeding 1 microm. Most cells exhibit only one hole, randomly positioned in the membrane, irrespective of its size. Moreover, on coexpression of holin and endolysin, the degradation of the cell wall leads to spherically shaped cells and a collapsed inner membrane sac. To obtain a 3D view of the hole by cryo-electron tomography, we needed to reduce the average size of the cells significantly. By taking advantage of the coupling of bacterial cell size and growth rate, we achieved an 80% reduction in cell mass by shifting to succinate minimal medium for inductions of the S105 gene. Cryotomographic analysis of the holes revealed that they were irregular in shape and showed no evidence of membrane invagination. The unexpected scale of these holes has implications for models of holin function.
- Published
- 2010
- Full Text
- View/download PDF
45. Plant FtsZ1 and FtsZ2 expressed in a eukaryotic host: GTPase activity and self-assembly.
- Author
-
Smith AG, Johnson CB, Vitha S, and Holzenburg A
- Subjects
- Arabidopsis Proteins biosynthesis, GTP Phosphohydrolases biosynthesis, Pichia genetics, Recombinant Proteins biosynthesis, Recombinant Proteins metabolism, Arabidopsis enzymology, Arabidopsis Proteins metabolism, GTP Phosphohydrolases metabolism
- Abstract
Plants and algae contain the FtsZ1 and FtsZ2 protein families that perform specific, non-redundant functions in plastid division. In vitro studies of chloroplast division have been hampered by the lack of a suitable expression system. Here we report the expression and purification of FtsZ1-1 and FtsZ2-1 from Arabidopsis thaliana using a eukaryotic host. Specific GTPase activities were determined and found to be different for FtsZ1-1 vs. FtsZ2-1. The purified proteins readily assembled into previously unreported assembly products named type-I and -II filaments. In contrast to bacterial FtsZ, the Arabidopsis proteins do not form bundled sheets in the presence of Ca(2+).
- Published
- 2010
- Full Text
- View/download PDF
46. PARC6, a novel chloroplast division factor, influences FtsZ assembly and is required for recruitment of PDV1 during chloroplast division in Arabidopsis.
- Author
-
Glynn JM, Yang Y, Vitha S, Schmitz AJ, Hemmes M, Miyagishima SY, and Osteryoung KW
- Subjects
- Arabidopsis cytology, Arabidopsis metabolism, DNA, Plant genetics, Gene Expression Regulation, Plant, Membrane Proteins genetics, Mutation, Sequence Analysis, DNA, Arabidopsis genetics, Arabidopsis Proteins metabolism, Chloroplasts metabolism, Membrane Proteins metabolism
- Abstract
Chloroplast division in plant cells is accomplished through the coordinated action of the tubulin-like FtsZ ring inside the organelle and the dynamin-like ARC5 ring outside the organelle. This coordination is facilitated by ARC6, an inner envelope protein required for both assembly of FtsZ and recruitment of ARC5. Recently, we showed that ARC6 specifies the mid-plastid positioning of the outer envelope proteins PDV1 and PDV2, which have parallel functions in dynamin recruitment. PDV2 positioning involves direct ARC6-PDV2 interaction, but PDV1 and ARC6 do not interact indicating that an additional factor functions downstream of ARC6 to position PDV1. Here, we show that PARC6 (paralog of ARC6), an ARC6-like protein unique to vascular plants, fulfills this role. Like ARC6, PARC6 is an inner envelope protein with its N-terminus exposed to the stroma and Arabidopsis parc6 mutants exhibit defects of chloroplast and FtsZ filament morphology. However, whereas ARC6 promotes FtsZ assembly, PARC6 appears to inhibit FtsZ assembly, suggesting that ARC6 and PARC6 function as antagonistic regulators of FtsZ dynamics. The FtsZ inhibitory activity of PARC6 may involve its interaction with the FtsZ-positioning factor ARC3. A PARC6-GFP fusion protein localizes both to the mid-plastid and to a single spot at one pole, reminiscent of the localization of ARC3, PDV1 and ARC5. Although PARC6 localizes PDV1, it is not required for PDV2 localization or ARC5 recruitment. Our findings indicate that PARC6, like ARC6, plays a role in coordinating the internal and external components of the chloroplast division complex, but that PARC6 has evolved distinct functions in the division process.
- Published
- 2009
- Full Text
- View/download PDF
47. Improved protein detection using cold microwave technology.
- Author
-
Smith AG, Jayaram J, Johnson CB, Ellis EA, Vitha S, Collisson EW, and Holzenburg A
- Subjects
- Animals, Cells, Cultured, Cold Temperature, Electrophoresis, Polyacrylamide Gel methods, Blotting, Western methods, Microwaves, Proteins analysis, Staining and Labeling methods
- Abstract
Protein screening/detection is an essential tool in many laboratories. Owing to the relatively large time investments that are required by standard protocols, the development of methods with higher throughput while maintaining an at least comparable signal-to-noise ratio would be highly beneficial to many researchers. This chapter describes how cold microwave technology can be used to enhance the rate of molecular interactions and provides protocols for dot blots, western blots, and ELISA procedures permitting a completion of all incubation steps (blocking and antibody steps) within 45 min.
- Published
- 2009
- Full Text
- View/download PDF
48. In vivo quantitative relationship between plastid division proteins FtsZ1 and FtsZ2 and identification of ARC6 and ARC3 in a native FtsZ complex.
- Author
-
McAndrew RS, Olson BJ, Kadirjan-Kalbach DK, Chi-Ham CL, Vitha S, Froehlich JE, and Osteryoung KW
- Subjects
- Arabidopsis genetics, Arabidopsis metabolism, Arabidopsis Proteins genetics, Chloroplasts metabolism, Chloroplasts ultrastructure, Multiprotein Complexes metabolism, Pisum sativum cytology, Pisum sativum genetics, Pisum sativum metabolism, Plant Proteins genetics, Plastids ultrastructure, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Arabidopsis Proteins metabolism, Cell Division physiology, Plant Proteins metabolism, Plastids metabolism
- Abstract
FtsZ1 and FtsZ2 are phylogenetically distinct homologues of the tubulin-like bacterial cell division protein FtsZ that play major roles in the initiation and progression of plastid division in plant cells. Both proteins are components of a mid-plastid ring, the Z-ring, which functions as a contractile ring on the stromal surface of the chloroplast IEM (inner envelope membrane). FtsZ1 and FtsZ2 have been shown to interact, but their in vivo biochemical properties are largely unknown. To gain insight into the in vivo biochemical relationship between FtsZ1 and FtsZ2, in the present study we investigated their molecular levels in wild-type Arabidopsis thaliana plants and endogenous interactions in Arabidopsis and pea. Quantitative immunoblotting and morphometric analysis showed that the average total FtsZ concentration in chloroplasts of 3-week-old Arabidopsis plants is comparable with that in Escherichia coli. FtsZ levels declined as plants matured, but the molar ratio between FtsZ1 and FtsZ2 remained constant at approx. 1:2, suggesting that this stoichiometry is regulated and functionally important. Density-gradient centrifugation, native gel electrophoresis, gel filtration and co-immunoprecipitation experiments showed that a portion of the FtsZ1 and FtsZ2 in Arabidopsis and pea chloroplasts is stably associated in a complex of approximately 200-245 kDa. This complex also contains the FtsZ2-interacting protein ARC6 (accumulation and replicatioin of chloroplasts 6), an IEM protein, and analysis of density-gradient fractions suggests the presence of the FtsZ1-interacting protein ARC3. Based on the mid-plastid localization of ARC6 and ARC3 and their postulated roles in promoting and inhibiting chloroplast FtsZ polymer formation respectively, we hypothesize that the FtsZ1-FtsZ2-ARC3-ARC6 complex represents an unpolymerized IEM-associated pool of FtsZ that contributes to the dynamic regulation of Z-ring assembly and remodelling at the plastid division site in vivo.
- Published
- 2008
- Full Text
- View/download PDF
49. Protein screening using cold microwave technology.
- Author
-
Smith AG, Johnson CB, Ann Ellis E, Vitha S, and Holzenburg A
- Subjects
- Arabidopsis Proteins analysis, Blotting, Western, Temperature, Time Factors, Cold Temperature, Microwaves, Proteins analysis
- Abstract
Protein detection is a common yet time-intensive task in many laboratories. Here we report a protocol that makes use of cold microwave technology to reduce the total processing time to less than 1 h with dot and Western blot applications while yielding lower background noise at similar signal strength when compared with conventional protocols. With dot blots, the time savings was accompanied by a decrease in reagent use. With Western blots, the visibility of prestained markers was maintained, in stark contrast to conventional procedures. Experiments kept at a constant temperature of 21 degrees C support the existence of a microwave radiation effect, whereas an additional thermal effect is noted when the temperature is increased to 37 degrees C from ambient. Microwave-assisted dot blotting is suggested as an effective way of facilitating large-scale screening of expressed proteins.
- Published
- 2008
- Full Text
- View/download PDF
50. Chloroplast division.
- Author
-
Glynn JM, Miyagishima SY, Yoder DW, Osteryoung KW, and Vitha S
- Subjects
- Arabidopsis Proteins physiology, Dynamins physiology, Plant Proteins physiology, Plastids physiology, Chloroplasts physiology, Models, Biological
- Abstract
Chloroplasts are descendants of cyanobacteria and divide by binary fission. Several components of the division apparatus have been identified in the past several years and we are beginning to appreciate the plastid division process at a mechanistic level. In this review, we attempt to summarize the most recent developments in the field and assemble these observations into a working model of plastid division in plants.
- Published
- 2007
- Full Text
- View/download PDF
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