1. CEBPD modulates the airway smooth muscle transcriptomic response to glucocorticoids
- Author
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Mengyuan Kan, Maoyun Sun, Xiaofeng Jiang, Avantika R. Diwadkar, Vishal Parikh, Gaoyuan Cao, Eric Gebski, William Jester, Bo Lan, Reynold A. Panettieri, Cynthia Koziol-White, Quan Lu, and Blanca E. Himes
- Subjects
Airway smooth muscle ,Asthma ,CEBPD ,Inflammatory response ,Glucocorticoid response ,RNA-Seq ,Diseases of the respiratory system ,RC705-779 - Abstract
Abstract Background CCAAT/Enhancer Binding Protein D (CEBPD), a pleiotropic glucocorticoid-responsive transcription factor, modulates inflammatory responses. Of relevance to asthma, expression of CEBPD in airway smooth muscle (ASM) increases with glucocorticoid exposure. We sought to characterize CEBPD-mediated transcriptomic responses to glucocorticoid exposure in ASM by measuring changes observed after knockdown of CEBPD and its impact on asthma-related ASM function. Methods Primary ASM cells derived from four donors were transfected with CEBPD or non-targeting (NT) siRNA and exposed to vehicle control, budesonide (100 nM, 18 h), TNFα (10 ng/ml, 18 h), or both budesonide and TNFα. Subsequently, RNA-Seq was used to measure gene expression levels, and pairwise differential expression results were obtained for exposures versus vehicle and knockdown versus control conditions. Weighted gene co-expression analysis was performed to identify groups of genes with similar expression patterns across the various experimental conditions (i.e., CEBPD knockdown status, exposures). Results CEBPD knockdown altered expression of 3037 genes under at least one exposure (q-value
- Published
- 2022
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