245 results on '"Vincenzo Bonifati"'
Search Results
2. Establishing an online resource to facilitate global collaboration and inclusion of underrepresented populations: Experience from the MJFF Global Genetic Parkinson’s Disease Project
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Eva-Juliane Vollstedt, Harutyun Madoev, Anna Aasly, Azlina Ahmad-Annuar, Bashayer Al-Mubarak, Roy N. Alcalay, Victoria Alvarez, Ignacio Amorin, Grazia Annesi, David Arkadir, Soraya Bardien, Roger A. Barker, Melinda Barkhuizen, A. Nazli Basak, Vincenzo Bonifati, Agnita Boon, Laura Brighina, Kathrin Brockmann, Andrea Carmine Belin, Jonathan Carr, Jordi Clarimon, Mario Cornejo-Olivas, Leonor Correia Guedes, Jean-Christophe Corvol, David Crosiers, Joana Damásio, Parimal Das, Patricia de Carvalho Aguiar, Anna De Rosa, Jolanta Dorszewska, Sibel Ertan, Rosangela Ferese, Joaquim Ferreira, Emilia Gatto, Gençer Genç, Nir Giladi, Pilar Gómez-Garre, Hasmet Hanagasi, Nobutaka Hattori, Faycal Hentati, Dorota Hoffman-Zacharska, Sergey N. Illarioshkin, Joseph Jankovic, Silvia Jesús, Valtteri Kaasinen, Anneke Kievit, Peter Klivenyi, Vladimir Kostic, Dariusz Koziorowski, Andrea A. Kühn, Anthony E. Lang, Shen-Yang Lim, Chin-Hsien Lin, Katja Lohmann, Vladana Markovic, Mika Henrik Martikainen, George Mellick, Marcelo Merello, Lukasz Milanowski, Pablo Mir, Özgür Öztop-Çakmak, Márcia Mattos Gonçalves Pimentel, Teeratorn Pulkes, Andreas Puschmann, Ekaterina Rogaeva, Esther M. Sammler, Maria Skaalum Petersen, Matej Skorvanek, Mariana Spitz, Oksana Suchowersky, Ai Huey Tan, Pichet Termsarasab, Avner Thaler, Vitor Tumas, Enza Maria Valente, Bart van de Warrenburg, Caroline H. Williams-Gray, Ruey-Mei Wu, Baorong Zhang, Alexander Zimprich, Justin Solle, Shalini Padmanabhan, and Christine Klein
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Medicine ,Science - Published
- 2023
3. CRISPR/Cas9-mediated LRP10 Knockout in HuTu-80 and HEK 293T Cell Lines
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Martyna Grochowska, Vincenzo Bonifati, and Wim Mandemakers
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Biology (General) ,QH301-705.5 - Abstract
Loss-of-function (LoF) variants in the low-density lipoprotein receptor–related protein 10 gene (LRP10) have been recently implicated in the development of neurodegenerative diseases, including Parkinson's disease (PD), PD dementia (PDD), and dementia with Lewy bodies (DLB). However, despite the genetic evidence, little is known about the LRP10 protein function in health and disease. Here, we describe a detailed protocol to efficiently generate a LRP10 LoF model in two independent LRP10-expressing cell lines, HuTu-80 and HEK 293T, using the CRISPR/Cas9 genome-editing tool. Our method efficiently generates bi-allelic LRP10 knockout (KO), which can be further utilized to elucidate the physiological LRP10 protein function and to model some aspects of neurodegenerative disorders. Graphical abstract: CRISPR/Cas9 workflow for the generation of the LRP10 KO. (1) Designed single guide RNA (sgRNA) is cloned into CRISPR/Cas9 px458 plasmid. (2) Cells are transfected with the CRISPR/Cas9 plasmid containing sgRNA. (3) Two days post transfection, cells are dissociated and sorted as single cells by fluorescence-activated cell sorting (FACS). (4) After several weeks, expanded clonal lines are (5) verified with Sanger sequencing for the presence of INDELs (insertions or deletions), RT-qPCR for the amounts of LRP10 mRNA transcript, and Western blotting for the analysis of the LRP10 protein levels.
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- 2022
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4. Generation of isogenic control DJ-1-delP GC13 for the genetic Parkinson‘s disease-patient derived iPSC line DJ-1-delP (LCSBi008-A-1)
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Pauline Mencke, Zoé Hanss, Javier Jarazo, François Massart, Arkadiusz Rybicki, Elizabet Petkovski, Enrico Glaab, Ibrahim Boussaad, Vincenzo Bonifati, Jens Christian Schwamborn, Wim Mandemakers, and Rejko Krüger
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Biology (General) ,QH301-705.5 - Abstract
We describe the generation of an isogenic control cell line DJ-1-delP GC13 from an induced pluripotent stem cell (iPSC) line DJ-1-delP LCSBi008-A that was derived from fibroblasts obtained from a Parkinson’s disease (PD) patient. Using CRISPR/Cas9 technology, we corrected the disease causing c.471_473delGCC homozygous mutation in the PARK7 gene leading to p.158P deletion in the encoded protein DJ-1. The generated isogenic pair will be used for phenotypic analysis of PD-patient derived neurons and astrocytes.
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- 2022
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5. Generation and characterization of a genetic Parkinson’s disease-patient derived iPSC line DJ-1-delP (LCSBi008-A)
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Pauline Mencke, Ibrahim Boussaad, Gizem Önal, Anneke J.A. Kievit, Agnita J.W. Boon, Wim Mandemakers, Vincenzo Bonifati, and Rejko Krüger
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Biology (General) ,QH301-705.5 - Abstract
Here, we describe an induced pluripotent stem cell (iPSC) line that was derived from fibroblasts obtained from a monogenic Parkinson’s disease (PD) patient. The disease was caused by a c.634-636delGCC mutation in the PARK7 gene leading to p.158P deletion in the protein DJ-1. iPSCs were generated via electroporation using three episomal plasmids encoding human Oct3/4, Sox2, Klf4, Lin28, L-Myc combined with a short hairpin RNA for p53. The presence of the c.471_473delGCC mutation in exon 7 of PARK7 was confirmed by Sanger sequencing. The iPSCs express pluripotency markers, are capable of in vitro differentiation into the three germ layers and obtain karyotypic integrity.
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- 2022
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6. False negatives in GBA1 sequencing due to polymerase dependent allelic imbalance
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Jonas M. den Heijer, Arnoud Schmitz, Peter Lansbury, Valerie C. Cullen, Dana C. Hilt, Vincenzo Bonifati, and Geert Jan Groeneveld
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Medicine ,Science - Abstract
Abstract A variant in the GBA1 gene is one of the most common genetic risk factors to develop Parkinson’s disease (PD). Here the serendipitous finding is reported of a polymerase dependent allelic imbalance when using next generation sequencing, potentially resulting in false-negative results when the allele frequency falls below the variant calling threshold (by default commonly at 30%). The full GBA1 gene was sequenced using next generation sequencing on saliva derived DNA from PD patients. Four polymerase chain reaction conditions were varied in twelve samples, to investigate the effect on allelic imbalance: (1) the primers (n = 4); (2) the polymerase enzymes (n = 2); (3) the primer annealing temperature (Ta) specified for the used polymerase; and (4) the amount of DNA input. Initially, 1295 samples were sequenced using Q5 High-Fidelity DNA Polymerase. 112 samples (8.6%) had an exonic variant and an additional 104 samples (8.0%) had an exonic variant that did not pass the variant frequency calling threshold of 30%. After changing the polymerase to TaKaRa LA Taq DNA Polymerase Hot-Start Version: RR042B, all samples had an allele frequency passing the calling threshold. Allele frequency was unaffected by a change in primer, annealing temperature or amount of DNA input. Sequencing of the GBA1 gene using next generation sequencing might be susceptible to a polymerase specific allelic imbalance, which can result in a large amount of flase-negative results. This was resolved in our case by changing the polymerase. Regions displaying low variant calling frequencies in GBA1 sequencing output in previous and future studies might warrant additional scrutiny.
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- 2021
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7. Correcting Differential Gene Expression Analysis for Cyto—Architectural Alterations in Substantia Nigra of Parkinson’s Disease Patients Reveals Known and Potential Novel Disease—Associated Genes and Pathways
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Federico Ferraro, Christina Fevga, Vincenzo Bonifati, Wim Mandemakers, Ahmed Mahfouz, and Marcel Reinders
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Parkinson’s disease ,transcriptome analysis ,cyto-architecture ,meta-analysis ,interactome analysis ,Cytology ,QH573-671 - Abstract
Several studies have analyzed gene expression profiles in the substantia nigra to better understand the pathological mechanisms causing Parkinson’s disease (PD). However, the concordance between the identified gene signatures in these individual studies was generally low. This might have been caused by a change in cell type composition as loss of dopaminergic neurons in the substantia nigra pars compacta is a hallmark of PD. Through an extensive meta-analysis of nine previously published microarray studies, we demonstrated that a big proportion of the detected differentially expressed genes was indeed caused by cyto-architectural alterations due to the heterogeneity in the neurodegenerative stage and/or technical artefacts. After correcting for cell composition, we identified a common signature that deregulated the previously unreported ammonium transport, as well as known biological processes such as bioenergetic pathways, response to proteotoxic stress, and immune response. By integrating with protein interaction data, we shortlisted a set of key genes, such as LRRK2, PINK1, PRKN, and FBXO7, known to be related to PD, others with compelling evidence for their role in neurodegeneration, such as GSK3β, WWOX, and VPC, and novel potential players in the PD pathogenesis. Together, these data show the importance of accounting for cyto-architecture in these analyses and highlight the contribution of multiple cell types and novel processes to PD pathology, providing potential new targets for drug development.
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- 2022
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8. PERK-Mediated Unfolded Protein Response Activation and Oxidative Stress in PARK20 Fibroblasts
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Giuseppina Amodio, Ornella Moltedo, Dominga Fasano, Lucrezia Zerillo, Marco Oliveti, Paola Di Pietro, Raffaella Faraonio, Paolo Barone, Maria Teresa Pellecchia, Anna De Rosa, Giuseppe De Michele, Elena Polishchuk, Roman Polishchuk, Vincenzo Bonifati, Lucio Nitsch, Giovanna Maria Pierantoni, Maurizio Renna, Chiara Criscuolo, Simona Paladino, and Paolo Remondelli
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PARK20 ,PERK (PKR-like endoplasmic reticulum kinase) ,oxydative stress ,ER stress ,Synaptojanin 1 ,membrane trafficking ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
PARK20, an early onset autosomal recessive parkinsonism is due to mutations in the phosphatidylinositol-phosphatase Synaptojanin 1 (Synj1). We have recently shown that the early endosomal compartments are profoundly altered in PARK20 fibroblasts as well as the endosomal trafficking. Here, we report that PARK20 fibroblasts also display a drastic alteration of the architecture and function of the early secretory compartments. Our results show that the exit machinery from the Endoplasmic Reticulum (ER) and the ER-to-Golgi trafficking are markedly compromised in patient cells. As a consequence, PARK20 fibroblasts accumulate large amounts of cargo proteins within the ER, leading to the induction of ER stress. Interestingly, this stressful state is coupled to the activation of the PERK/eIF2α/ATF4/CHOP pathway of the Unfolded Protein Response (UPR). In addition, PARK20 fibroblasts reveal upregulation of oxidative stress markers and total ROS production with concomitant alteration of the morphology of the mitochondrial network. Interestingly, treatment of PARK20 cells with GSK2606414 (GSK), a specific inhibitor of PERK activity, restores the level of ROS, signaling a direct correlation between ER stress and the induction of oxidative stress in the PARK20 cells. All together, these findings suggest that dysfunction of early secretory pathway might contribute to the pathogenesis of the disease.
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- 2019
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9. Correction: Gene Expression Differences in Peripheral Blood of Parkinson's Disease Patients with Distinct Progression Profiles.
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Raquel Pinho, Leonor C Guedes, Lilach Soreq, Patrícia P Lobo, Tiago Mestre, Miguel Coelho, Mário M Rosa, Nilza Gonçalves, Pauline Wales, Tiago Mendes, Ellen Gerhardt, Christiane Fahlbusch, Vincenzo Bonifati, Michael Bonin, Gabriel Miltenberger-Miltényi, Fran Borovecki, Hermona Soreq, Joaquim J Ferreira, and Tiago F Outeiro
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Medicine ,Science - Abstract
[This corrects the article DOI: 10.1371/journal.pone.0157852.].
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- 2017
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10. Gene Expression Differences in Peripheral Blood of Parkinson's Disease Patients with Distinct Progression Profiles.
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Raquel Pinho, Leonor C Guedes, Lilach Soreq, Patrícia P Lobo, Tiago Mestre, Miguel Coelho, Mário M Rosa, Nilza Gonçalves, Pauline Wales, Tiago Mendes, Ellen Gerhardt, Christiane Fahlbusch, Vincenzo Bonifati, Michael Bonin, Gabriel Miltenberger-Miltényi, Fran Borovecki, Hermona Soreq, Joaquim J Ferreira, and Tiago F Outeiro
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Medicine ,Science - Abstract
The prognosis of neurodegenerative disorders is clinically challenging due to the inexistence of established biomarkers for predicting disease progression. Here, we performed an exploratory cross-sectional, case-control study aimed at determining whether gene expression differences in peripheral blood may be used as a signature of Parkinson's disease (PD) progression, thereby shedding light into potential molecular mechanisms underlying disease development. We compared transcriptional profiles in the blood from 34 PD patients who developed postural instability within ten years with those of 33 patients who did not develop postural instability within this time frame. Our study identified >200 differentially expressed genes between the two groups. The expression of several of the genes identified was previously found deregulated in animal models of PD and in PD patients. Relevant genes were selected for validation by real-time PCR in a subset of patients. The genes validated were linked to nucleic acid metabolism, mitochondria, immune response and intracellular-transport. Interestingly, we also found deregulation of these genes in a dopaminergic cell model of PD, a simple paradigm that can now be used to further dissect the role of these molecular players on dopaminergic cell loss. Altogether, our study provides preliminary evidence that expression changes in specific groups of genes and pathways, detected in peripheral blood samples, may be correlated with differential PD progression. Our exploratory study suggests that peripheral gene expression profiling may prove valuable for assisting in prediction of PD prognosis, and identifies novel culprits possibly involved in dopaminergic cell death. Given the exploratory nature of our study, further investigations using independent, well-characterized cohorts will be essential in order to validate our candidates as predictors of PD prognosis and to definitively confirm the value of gene expression analysis in aiding patient stratification and therapeutic intervention.
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- 2016
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11. Dopaminergic neuronal imaging in genetic Parkinson's disease: insights into pathogenesis.
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Alisdair McNeill, Ruey-Meei Wu, Kai-Yuan Tzen, Patricia C Aguiar, Jose M Arbelo, Paolo Barone, Kailash Bhatia, Orlando Barsottini, Vincenzo Bonifati, Sevasti Bostantjopoulou, Rodrigo Bressan, Giovanni Cossu, Pietro Cortelli, Andre Felicio, Henrique B Ferraz, Joanna Herrera, Henry Houlden, Marcelo Hoexter, Concepcion Isla, Andrew Lees, Oswaldo Lorenzo-Betancor, Niccolo E Mencacci, Pau Pastor, Sabina Pappata, Maria Teresa Pellecchia, Laura Silveria-Moriyama, Andrea Varrone, Tom Foltynie, and Anthony H V Schapira
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Medicine ,Science - Abstract
To compare the dopaminergic neuronal imaging features of different subtypes of genetic Parkinson's Disease.A retrospective study of genetic Parkinson's diseases cases in which DaTSCAN (123I-FP-CIT) had been performed. Specific non-displaceable binding was calculated for bilateral caudate and putamen for each case. The right:left asymmetry index and striatal asymmetry index was calculated.Scans were available from 37 cases of monogenetic Parkinson's disease (7 glucocerebrosidase (GBA) mutations, 8 alpha-synuclein, 3 LRRK2, 7 PINK1, 12 Parkin). The asymmetry of radioligand uptake for Parkinson's disease with GBA or LRRK2 mutations was greater than that for Parkinson's disease with alpha synuclein, PINK1 or Parkin mutations.The asymmetry of radioligand uptake in Parkinsons disease associated with GBA or LRRK2 mutations suggests that interactions with additional genetic or environmental factors may be associated with dopaminergic neuronal loss.
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- 2013
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12. Dopaminergic neuronal loss and dopamine-dependent locomotor defects in Fbxo7-deficient zebrafish.
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Tianna Zhao, Herma Zondervan-van der Linde, Lies-Anne Severijnen, Ben A Oostra, Rob Willemsen, and Vincenzo Bonifati
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Medicine ,Science - Abstract
Recessive mutations in the F-box only protein 7 gene (FBXO7) cause PARK15, a mendelian form of early-onset, levodopa-responsive parkinsonism with severe loss of nigrostriatal dopaminergic neurons. However, the function of the protein encoded by FBXO7, and the pathogenesis of PARK15 remain unknown. No animal models of this disease exist. Here, we report the generation of a vertebrate model of PARK15 in zebrafish. We first show that the zebrafish Fbxo7 homolog protein (zFbxo7) is expressed abundantly in the normal zebrafish brain. Next, we used two zFbxo7-specific morpholinos (targeting protein translation and mRNA splicing, respectively), to knock down the zFbxo7 expression. The injection of either of these zFbxo7-specific morpholinos in the fish embryos induced a marked decrease in the zFbxo7 protein expression, and a range of developmental defects. Furthermore, whole-mount in situ mRNA hybridization showed abnormal patterning and significant decrease in the number of diencephalic tyrosine hydroxylase-expressing neurons, corresponding to the human nigrostriatal or ventral tegmental dopaminergic neurons. Of note, the number of the dopamine transporter-expressing neurons was much more severely depleted, suggesting dopaminergic dysfunctions earlier and larger than those due to neuronal loss. Last, the zFbxo7 morphants displayed severe locomotor disturbances (bradykinesia), which were dramatically improved by the dopaminergic agonist apomorphine. The severity of these morphological and behavioral abnormalities correlated with the severity of zFbxo7 protein deficiency. Moreover, the effects of the co-injection of zFbxo7- and p53-specific morpholinos were similar to those obtained with zFbxo7-specific morpholinos alone, supporting further the contention that the observed phenotypes were specifically due to the knock down of zFbxo7. In conclusion, this novel vertebrate model reproduces pathologic and behavioral hallmarks of human parkinsonism (dopaminergic neuronal loss and dopamine-dependent bradykinesia), representing therefore a valid tool for investigating the mechanisms of selective dopaminergic neuronal death, and screening for modifier genes and therapeutic compounds.
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- 2012
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13. Loss of nuclear activity of the FBXO7 protein in patients with parkinsonian-pyramidal syndrome (PARK15).
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Tianna Zhao, Esther De Graaff, Guido J Breedveld, Agnese Loda, Lies-Anne Severijnen, Cokkie H Wouters, Frans W Verheijen, Marieke C J Dekker, Pasquale Montagna, Rob Willemsen, Ben A Oostra, and Vincenzo Bonifati
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Medicine ,Science - Abstract
Mutations in the F-box only protein 7 gene (FBXO7) cause PARK15, an autosomal recessive neurodegenerative disease presenting with severe levodopa-responsive parkinsonism and pyramidal disturbances. Understanding the PARK15 pathogenesis might thus provide clues on the mechanisms of maintenance of brain dopaminergic neurons, the same which are lost in Parkinson's disease. The protein(s) encoded by FBXO7 remain very poorly characterized. Here, we show that two protein isoforms are expressed from the FBXO7 gene in normal human cells. The isoform 1 is more abundant, particularly in primary skin fibroblasts. Both isoforms are undetectable in cell lines from the PARK15 patient of an Italian family; the isoform 1 is undetectable and the isoform 2 is severely decreased in the patients from a Dutch PARK15 family. In human cell lines and mouse primary neurons, the endogenous or over-expressed, wild type FBXO7 isoform 1 displays mostly a diffuse nuclear localization. An intact N-terminus is needed for the nuclear FBXO7 localization, as N-terminal modification by PARK15-linked missense mutation, or N-terminus tag leads to cytoplasmic mislocalization. Furthermore, the N-terminus of wild type FBXO7 (but not of mutant FBXO7) is able to confer nuclear localization to profilin (a cytoplasmic protein). Our data also suggest that overexpressed mutant FBXO7 proteins (T22M, R378G and R498X) have decreased stability compared to their wild type counterpart. In human brain, FBXO7 immunoreactivity was highest in the nuclei of neurons throughout the cerebral cortex, intermediate in the globus pallidum and the substantia nigra, and lowest in the hippocampus and cerebellum. In conclusion, the common cellular abnormality found in the PARK15 patients from the Dutch and Italian families is the depletion of the FBXO7 isoform 1, which normally localizes in the cell nucleus. The activity of FBXO7 in the nucleus appears therefore crucial for the maintenance of brain neurons and the pathogenesis of PARK15.
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- 2011
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14. LRP10 as a novel α-synuclein regulator in Lewy body diseases
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Ana Carreras Mascaro, Martyna M. Grochowska, Valerie Boumeester, Natasja F. J. Dits, Ece Naz Bilgiҫ, Guido J. Breedveld, Leonie Vergouw, Frank Jan de Jong, Martin E. van Royen, Vincenzo Bonifati, and Wim Mandemakers
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Autosomal dominant variants inLRP10have been identified in patients with Lewy body diseases (LBDs), including Parkinson’s disease (PD), Parkinson’s disease-dementia (PDD), and dementia with Lewy bodies (DLB). Nevertheless, there is little mechanistic insight into the role of LRP10 in disease pathogenesis. In the brains of non-demented individuals, LRP10 is typically expressed in non-neuronal cells like astrocytes and neurovasculature, but in idiopathic and genetic cases of PD, PDD, and DLB it is also present in α-synuclein-positive neuronal Lewy bodies. These observations raise the questions of what leads to the accumulation of LRP10 in Lewy bodies and whether a possible interaction between LRP10 and α-synuclein plays a role in disease pathogenesis. Here, we demonstrate that wild-type LRP10 is secreted via extracellular vesicles (EVs) and can be internalised via clathrin-dependent endocytosis. Additionally, we show that LRP10 secretion is highly sensitive to autophagy inhibition, which induces the formation of atypical LRP10 vesicular structures in neurons in human induced pluripotent stem cells (iPSC)-derived midbrain-like organoids (hMLOs). Furthermore, we show that LRP10 overexpression leads to a strong induction of monomeric α-synuclein secretion, together with time-dependent, stress-sensitive changes in intracellular α-synuclein levels. Interestingly, patient-derived astrocytes carrying thec.1424+5G>A LRP10variant secrete aberrant high-molecular-weight species of LRP10 in EV-free media fractions. Finally, we show that the truncated LRP10spliceprotein binds to wild-type LRP10, reduces LRP10 wild-type levels, and antagonises the regulatory effect of LRP10 on α-synuclein levels and distribution. Together, this work provides initial evidence for a functional role of LRP10 in LBDs by regulating intra- and extracellular α-synuclein levels, and pathogenic mechanisms linked to the disease-associatedc.1424+5G>A LRP10variant, pointing towards potentially important disease mechanisms in LBDs.
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- 2023
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15. Defining the Riddle in Order to Solve It
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Tiago F. Outeiro, Roy N. Alcalay, Angelo Antonini, Johannes Attems, Vincenzo Bonifati, Francisco Cardoso, Marie‐Françoise Chesselet, John Hardy, Graziella Madeo, Ian McKeith, Brit Mollenhauer, Darren J. Moore, Olivier Rascol, Michael G. Schlossmacher, Hermona Soreq, Leonidas Stefanis, Joaquim J. Ferreira, and Repositório da Universidade de Lisboa
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Lewy body ,Diagnostic criteria ,Neurology ,SDG 3 - Good Health and Well-being ,Parkinson's disease ,Neurology (clinical) ,Biological definition ,Biomarker ,Neurodegeneration ,Neuropathology - Abstract
© 2023 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society. This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made., Background: More than 200 years after James Parkinsondescribed a clinical syndrome based on his astute observations, Parkinson's disease (PD) has evolved into a complex entity, akin to the heterogeneity of other complex human syndromes of the central nervous system such as dementia, motor neuron disease, multiple sclerosis, and epilepsy. Clinicians, pathologists, and basic science researchers evolved arrange of concepts andcriteria for the clinical, genetic, mechanistic, and neuropathological characterization of what, in their best judgment, constitutes PD. However, these specialists have generated and used criteria that are not necessarily aligned between their different operational definitions, which may hinder progress in solving the riddle of the distinct forms of PD and ultimately how to treat them. Objective: This task force has identified current in consistencies between the definitions of PD and its diverse variants in different domains: clinical criteria, neuropathological classification, genetic subtyping, biomarker signatures, and mechanisms of disease. This initial effort for "defining the riddle" will lay the foundation for future attempts to better define the range of PD and its variants, as has been done and implemented for other heterogeneous neurological syndromes, such as stroke and peripheral neuropathy. We strongly advocate for a more systematic and evidence-based integration of our diverse disciplines by looking at well-defined variants of the syndrome of PD. Conclusion: Accuracy in defining endophenotypes of "typical PD" across these different but interrelated disciplines will enable better definition of variants and their stratification in therapeutic trials, a prerequisite for breakthroughs in the era of precision medicine. © 2023 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society., T.F.O. is supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy—EXC (2067/1-390729940). V.B. is supported by the Stichting Parkinson Fonds (the Netherlands). M.G.S. is supported by the Bhargava Family Research Chair in Neurodegeneration, the Department of Medicine at The Ottawa Hospital and its Foundation. B.M. is supported by The Michael J. Fox Foundation for PD Research, DFG, EU (Horizon 2020), the National Parkinson's Foundation, Parkinson Fonds Deutschland, and the Deutsche Parkinson Vereinigung. L.S. and T.F.O. were supported by IMPRiND and EU (Horizon 2020). H.S. was supported by the Advanced ERC program, The Michael J. Fox foundation, and the Israel Science Fund. We thank Dr. J.P. Vonsattel, Columbia University, for providing the images for Figure 2. Open Access funding enabled and organized by Projekt DEAL.
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- 2023
16. Family History for Neurodegeneration in Multiple System Atrophy: Does it Indicate Susceptibility?
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Fabian Leys, Sabine Eschlböck, Nicole Campese, Philipp Mahlknecht, Marina Peball, Georg Goebel, Victoria Sidoroff, Roberta Granata, Vincenzo Bonifati, Johannes Zschocke, Stefan Kiechl, Werner Poewe, Klaus Seppi, Gregor K. Wenning, Alessandra Fanciulli, and Clinical Genetics
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Neurology ,alpha-Synuclein ,Humans ,Parkinson Disease ,Neurology (clinical) ,Multiple System Atrophy - Published
- 2022
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17. deCLUTTER2+pipeline to analyze calcium traces in a novel stem cell model for ventral midbrain patterned astrocytes
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Martyna M. Grochowska, Federico Ferraro, Ana Carreras Mascaro, Domenico Natale, Amber Winkelaar, Valerie Boumeester, Guido J. Breedveld, Vincenzo Bonifati, and Wim Mandemakers
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Astrocytes are the most populous cell type of the human central nervous system and are essential for physiological brain function. Increasing evidence suggests multiple roles for astrocytes in Parkinson’s disease (PD), nudging a shift in the research focus, which historically pivoted around the ventral midbrain dopaminergic neurons (vmDANs). Studying human astrocytes and other cell types in vivo remains technically and ethically challenging. However, in vitro reprogrammed human stem cell-based models provide a promising alternative. Here, we describe a novel protocol for astrocyte differentiation from human stem cell-derived vmDANs-generating progenitors. This protocol simulates the regionalization, gliogenic switch, radial migration, and final differentiation that occur in the developing human brain. We have characterized the morphological, molecular, and functional features of these ventral midbrain astrocytes with a broad palette of techniques. In addition, we have developed a new pipeline for calcium imaging data analysis called deCLUTTER2+(deconvolution ofCa2+fluorescent patterns) that can be used to discover spontaneous or cue-dependent patterns of Ca2+transients. Altogether, our protocol enables the characterization of the functional properties of human ventral midbrain astrocytes under physiological conditions and in PD.
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- 2022
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18. A new alpha-synuclein missense variant (Thr72Met) in two Turkish families with Parkinson's disease
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Guido J. Breedveld, Anneke J.A. Kievit, Leon de Boer, Murat Emre, Hasmet Hanagasi, Federico Ferraro, Ebba Lohmann, Yangshin Park, Wei Wang, Gregory A. Petsko, Christina Fevga, Quyen Q. Hoang, Rick van Minkelen, Agnita J.W. Boon, Vincenzo Bonifati, Clinical Genetics, and Neurology
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0301 basic medicine ,Turkey ,In silico ,Locus (genetics) ,α-syn ,Biology ,Late-onset ,Parkinsonism ,Article ,03 medical and health sciences ,symbols.namesake ,chemistry.chemical_compound ,0302 clinical medicine ,Missense mutation ,Humans ,Variant ,Gene ,Exome sequencing ,Genetics ,Sanger sequencing ,Alpha-synuclein ,Haplotype ,Parkinson Disease ,Middle Aged ,Pedigree ,Thr72Met ,030104 developmental biology ,Phenotype ,Neurology ,chemistry ,Haplotypes ,symbols ,alpha-Synuclein ,Female ,Neurology (clinical) ,SNCA ,Geriatrics and Gerontology ,030217 neurology & neurosurgery - Abstract
Introduction: Missense variants and multiplications of the alpha-synuclein gene (SNCA) are established as rare causes of autosomal dominant forms of Parkinson's Disease (PD). Methods: Two families of Turkish origins with PD were studied; the SNCA coding region was analyzed by Sanger sequencing, and by whole exome sequencing (WES) in the index patient of the first and the second family, respectively. Co-segregation studies and haplotype analysis across the SNCA locus were carried out. Functional studies included in vitro thioflavin-T aggregation assay and in silico structural modelling of the alpha-synuclein (α-syn) protein. Results: We identified a novel heterozygous SNCA variant, c.215C > T (p.Thr72Met), segregating with PD in a total of four members in the two families. A shared haplotype across the SNCA locus was found among variant carriers, suggestive of a common ancestor. We next showed that the Thr72Met α-syn displays enhanced aggregation in-vitro, compared to the wild-type species. In silico analysis of a tetrameric α-syn structural model revealed that Threonine 72 lies in the tetrameric interface, and substitution with the much larger methionine residue could potentially destabilize the tetramer. Conclusion: We present clinical, genetic, and functional data supporting a causative role of the SNCA c.215C > T (p.Thr72Met) variant in familial PD. Testing for this variant in patients with PD, especially of Turkish origin, might detect additional carriers. Further functional analyses might offer new insights into the shared biochemical properties of the PD-causing SNCA missense variants, and how they lead to neurodegeneration.
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- 2021
19. Segmental dystonia as the prominent phenotype resulting from a MICU1 splice variant in a new Indian case
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Christina Fevga, Federico Ferraro, Guido J. Breedveld, Charulata Savant Sankhla, Vincenzo Bonifati, and Clinical Genetics
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Dystonia ,Phenotype ,Asian People ,Neurology ,Dystonic Disorders ,Mutation ,Calcium-Binding Proteins ,Humans ,Neurology (clinical) ,Geriatrics and Gerontology ,Mitochondrial Membrane Transport Proteins ,Cation Transport Proteins - Published
- 2022
20. EIF2AK2 Missense Variants Associated with Early Onset Generalized Dystonia
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Lena Sagi-Dain, Martje G. Pauly, Chiung C. Chen, Niccolo E. Mencacci, Shey Lin Wu, Inge A. Meijer, Aida M. Bertoli-Avella, Krishna Kumar Kandaswamy, Steven J. Lubbe, Celeste Panteghini, Wim Mandemakers, Christine Klein, Nicolas Marotta, Katja Lohmann, Peter Bauer, Andrea A. Kühn, Baiba Lace, Vincenzo Bonifati, Tu Hsueh Yeh, Chin Song Lu, Miryam Carecchio, Antonio E. Elia, Christina Fevga, Yah Huei Wu-Chou, Yi Hsin Weng, Vera Tadic, Bradley Osterman, Marialuisa Quadri, Barbara Garavaglia, Simone Olgiati, Guido J. Breedveld, Jens Volkmann, Hsiu Chen Chang, Demy J.S. Kuipers, and Clinical Genetics
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0301 basic medicine ,Adult ,Male ,Adolescent ,Mutation, Missense ,Biology ,White People ,03 medical and health sciences ,symbols.namesake ,Young Adult ,eIF-2 Kinase ,0302 clinical medicine ,Asian People ,Genetic linkage ,Exome Sequencing ,medicine ,Missense mutation ,Humans ,Age of Onset ,Protein kinase A ,Child ,Exome ,Research Articles ,Dystonia ,Sanger sequencing ,Genetics ,Kinase ,Brain ,Infant ,Fibroblasts ,Middle Aged ,medicine.disease ,Protein kinase R ,Magnetic Resonance Imaging ,Pedigree ,030104 developmental biology ,Neurology ,Dystonic Disorders ,Child, Preschool ,symbols ,Female ,Neurology (clinical) ,030217 neurology & neurosurgery ,Genome-Wide Association Study ,Research Article - Abstract
Objective: The study was undertaken to identify a monogenic cause of early onset, generalized dystonia. Methods: Methods consisted of genome-wide linkage analysis, exome and Sanger sequencing, clinical neurological examination, brain magnetic resonance imaging, and protein expression studies in skin fibroblasts from patients. Results: We identified a heterozygous variant, c.388G>A, p.Gly130Arg, in the eukaryotic translation initiation factor 2 alpha kinase 2 (EIF2AK2) gene, segregating with early onset isolated generalized dystonia in 5 patients of a Taiwanese family. EIF2AK2 sequencing in 191 unrelated patients with unexplained dystonia yielded 2 unrelated Caucasian patients with an identical heterozygous c.388G>A, p.Gly130Arg variant, occurring de novo in one case, another patient carrying a different heterozygous variant, c.413G>C, p.Gly138Ala, and one last patient, born from consanguineous parents, carrying a third, homozygous variant c.95A>C, p.Asn32Thr. These 3 missense variants are absent from gnomAD, and are located in functional domains of the encoded protein. In 3 patients, additional neurological manifestations were present, including intellectual disability and spasticity. EIF2AK2 encodes a kinase (protein kinase R [PKR]) that phosphorylates eukaryotic translation initiation factor 2 alpha (eIF2α), which orchestrates the cellular stress response. Our expression studies showed abnormally enhanced activation of the cellular stress response, monitored by PKR-mediated phosphorylation of eIF2α, in fibroblasts from patients with EIF2AK2 variants. Intriguingly, PKR can also be regulated by PRKRA (protein interferon-inducible double-stranded RNA-dependent protein kinase activator A), the product of another gene causing monogenic dystonia. Interpretation: We identified EIF2AK2 variants implicated in early onset generalized dystonia, which can be dominantly or recessively inherited, or occur de novo. Our findings provide direct evidence for a key role of a dysfunctional eIF2α pathway in the pathogenesis of dystonia. ANN NEUROL 2021;89:485–497.
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- 2021
21. A multiplex pedigree with pathologically confirmed multiple system atrophy and Parkinson’s disease with dementia
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Alessandra Fanciulli, Fabian Leys, Fabienne Lehner, Victoria Sidoroff, Viktoria C Ruf, Cecilia Raccagni, Philipp Mahlknecht, Demy J S Kuipers, Wilfred F J van IJcken, Heike Stockner, Thomas Musacchio, Jens Volkmann, Camelia Maria Monoranu, Iva Stankovic, Guido Breedveld, Federico Ferraro, Christina Fevga, Otto Windl, Jochen Herms, Stefan Kiechl, Werner Poewe, Klaus Seppi, Nadia Stefanova, Sonja W Scholz, Vincenzo Bonifati, Gregor K Wenning, Clinical Genetics, and Cell biology
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SDG 3 - Good Health and Well-being ,General Engineering - Abstract
Multiple system atrophy is considered a sporadic disease, but neuropathologically confirmed cases with a family history of parkinsonism have been occasionally described. Here we report a North-Bavarian (colloquially, Lion’s tail region) six-generation pedigree, including neuropathologically confirmed multiple system atrophy and Parkinson’s disease with dementia. Between 2012 and 2020, we examined all living and consenting family members of age and calculated the risk of prodromal Parkinson’s disease in those without overt parkinsonism. The index case and one paternal cousin with Parkinson’s disease with dementia died at follow-up and underwent neuropathological examination. Genetic analysis was performed in both and another family member with Parkinson’s disease. The index case was a female patient with cerebellar variant multiple system atrophy and a positive maternal and paternal family history for Parkinson’s disease and dementia in multiple generations. The families of the index case and her spouse were genealogically related, and one of the spouse's siblings met the criteria for possible prodromal Parkinson’s disease. Neuropathological examination confirmed multiple system atrophy in the index case and advanced Lewy body disease, as well as tau pathology in her cousin. A comprehensive analysis of genes known to cause hereditary forms of parkinsonism or multiple system atrophy lookalikes was unremarkable in the index case and the other two affected family members. Here, we report an extensive European pedigree with multiple system atrophy and Parkinson`s disease suggesting a complex underlying α-synucleinopathy as confirmed on neuropathological examination. The exclusion of known genetic causes of parkinsonism or multiple system atrophy lookalikes suggests that variants in additional, still unknown genes, linked to α-synucleinopathy lesions underlie such neurodegenerative clustering.
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- 2022
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22. Experience in Genetic Counseling for GBA1 Variants in Parkinson's Disease
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Vincenzo Bonifati, Jonas M. den Heijer, Anneke J.A. Kievit, Geert Jan Groeneveld, Jacobus J. van Hilten, and Clinical Genetics
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Genetics ,Parkinson's disease ,medicine.diagnostic_test ,business.industry ,glucocerebrosidase ,heredity ,Genetic counseling ,genetic risk factor ,trial ,medicine.disease ,medicine.disease_cause ,genetic testing ,Viewpoint ,Neurology ,Heredity ,medicine ,Neurology (clinical) ,Genetic risk factor ,business ,Glucocerebrosidase ,Genetic testing - Published
- 2020
23. Clinical and Pathological Phenotypes of LRP10 Variant Carriers with Dementia
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Hanneke Geut, John C. van Swieten, Vincenzo Bonifati, Annemieke J.M. Rozemuller, Guido J. Breedveld, Frank Jan de Jong, Leonie J.M. Vergouw, Wilma D.J. van de Berg, Netherlands Brain Bank, Demy J.S. Kuipers, Marialuisa Quadri, Neurology, Clinical Genetics, Netherlands Institute for Neuroscience (NIN), Amsterdam Neuroscience - Neurodegeneration, Anatomy and neurosciences, Pathology, and Human genetics
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Lewy Body Disease ,Male ,0301 basic medicine ,Heterozygote ,LRP10 ,phenotype ,genotype ,Genetic predisposition to disease ,Disease ,Neuropathology ,Bioinformatics ,03 medical and health sciences ,0302 clinical medicine ,Alzheimer Disease ,mental disorders ,medicine ,Humans ,Dementia ,Family history ,Pathological ,LDL-Receptor Related Proteins ,Aged ,Aged, 80 and over ,neuropathology ,business.industry ,Dementia with Lewy bodies ,General Neuroscience ,Parkinsonism ,Brain ,Parkinson Disease ,General Medicine ,medicine.disease ,Psychiatry and Mental health ,Clinical Psychology ,030104 developmental biology ,Etiology ,Female ,Geriatrics and Gerontology ,business ,030217 neurology & neurosurgery ,Research Article - Abstract
Background: Rare variants in the low-density lipoprotein receptor related protein 10 gene (LRP10) have recently been implicated in the etiology of Parkinson’s disease (PD) and dementia with Lewy bodies (DLB). Objective: We searched for LRP10 variants in a new series of brain donors with dementia and Lewy pathology (LP) at autopsy, or dementia and parkinsonism without LP but with various other neurodegenerative pathologies. Methods: Sanger sequencing of LRP10 was performed in 233 donors collected by the Netherlands Brain Bank. Results: Rare, possibly pathogenic heterozygous LRP10 variants were present in three patients: p.Gly453Ser in a patient with mixed Alzheimer’s disease (AD)/Lewy body disease (LBD), p.Arg151Cys in a DLB patient, and p.Gly326Asp in an AD patient without LP. All three patients had a positive family history for dementia or PD. Conclusion: Rare LRP10 variants are present in some patients with dementia and different brain pathologies including DLB, mixed AD/LBD, and AD. These findings suggest a role for LRP10 across a broad neurodegenerative spectrum.
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- 2020
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24. Isolated Paroxysmal Non-kinesigenic Dystonia Associated with Homozygous PDHB Variant in an Indian Family
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Pankaj A. Agarwal, Demy J.S. Kuipers, Christina Fevga, Shruti Agrawal, Sangeeta H. Ravat, Guido J. Breedveld, Kapil Sethi, Vincenzo Bonifati, and Clinical Genetics
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Dystonia ,Asian People ,Neurology ,Homozygote ,Humans ,Nerve Tissue Proteins ,Neurology (clinical) - Published
- 2022
25. WARS2 mutations cause dopa-responsive early-onset parkinsonism and progressive myoclonus ataxia
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Matej Skorvanek, Irena Rektorova, Wim Mandemakers, Matias Wagner, Robert Steinfeld, Laura Orec, Vladimir Han, Petra Pavelekova, Alexandra Lackova, Kristina Kulcsarova, Miriam Ostrozovicova, Zuzana Gdovinova, Barbara Plecko, Theresa Brunet, Riccardo Berutti, Demy J.S. Kuipers, Valerie Boumeester, Petra Havrankova, M.A.J. Tijssen, Rauan Kaiyrzhanov, Mie Rizig, Henry Houlden, Juliane Winkelmann, Vincenzo Bonifati, Michael Zech, Robert Jech, Clinical Genetics, and Movement Disorder (MD)
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Myoclonus ,DYSTONIA ,Whole exome sequencing ,WARS2 ,TRANSFER-RNA SYNTHETASE ,Tryptophan-tRNA Ligase ,VARIANTS ,Dihydroxyphenylalanine ,nervous system diseases ,Phenotype ,Neurology ,Parkinsonian Disorders ,Early onset parkinsonism ,Mutation ,Tremor ,Progressive myoclonus ataxia ,Humans ,Ataxia ,Neurology (clinical) ,Geriatrics and Gerontology ,Spinocerebellar Degenerations - Abstract
Introduction: Sixteen subjects with biallelic WARS2 variants encoding the tryptophanyl mitochondrial aminoacyl-tRNA synthetase, presenting with a neonatal- or infantile-onset mitochondrial disease, have been reported to date. Here we present six novel cases with WARS2-related diseases and expand the spectrum to later onset phenotypes including dopa-responsive early-onset parkinsonism and progressive myoclonus-ataxia.Methods: Six individuals from four families underwent whole-exome sequencing within research and diagnostic settings. Following the identification of a genetic defect, in-depth phenotyping and protein expression studies were performed.Results: A relatively common (gnomAD MAF = 0.0033) pathogenic p.(Trp13Gly) missense variant in WARS2 was detected in trans in all six affected individuals in combination with different pathogenic alleles (exon 2 deletion in family 1; p.(Leu100del) in family 2; p.(Gly50Asp) in family 3; and p.(Glu208*) in family 4). Two subjects presented with action tremor around age 10-12 years and developed tremor-dominant parkinsonism with prominent neuropsychiatric features later in their 20s. Two subjects presented with a progressive myoclonusataxia dominant phenotype. One subject presented with spasticity, choreo-dystonia, myoclonus, and speech problems. One subject presented with speech problems, ataxia, and tremor. Western blotting analyses in patientderived fibroblasts showed a markedly decreased expression of the full-length WARS2 protein in both subjects carrying p.(Trp13Gly) and an exon-2 deletion in compound heterozygosity.Conclusions: This study expands the spectrum of the disease to later onset phenotypes of early-onset tremordominant parkinsonism and progressive myoclonus-ataxia phenotypes.
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- 2022
26. Clinical Profile and Treatment Outcomes of Hypermanganesemia with Dystonia 1 and 2 among 27 Indian Children
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Divyani Garg, Sangeetha Yoganathan, Uzma Shamim, Kshitij Mankad, Parveen Gulati, Vincenzo Bonifati, Abhijeet Botre, Umesh Kalane, Arushi Gahlot Saini, Naveen Sankhyan, Kavita Srivastava, Vykuntaraju K. Gowda, Monica Juneja, Mahesh Kamate, Hansashree Padmanabha, Debasis Panigrahi, Shaila Pachapure, Vrajesh Udani, Atin Kumar, Sanjay Pandey, Maya Thomas, Sumita Danda, Shaikh Atif Iqbalahmed, Annadurai Subramanian, Harish Pemde, Varinder Singh, Mohammed Faruq, Suvasini Sharma, and Clinical Genetics
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Neurology ,Neurology (clinical) - Abstract
Background Hypermanganesemia with dystonia 1 and 2 (HMNDYT1 and 2) are rare, inherited disorders of manganese transport. Objectives We aimed to describe clinical, laboratory features, and outcomes among children with HMNDYT. Methods We conducted a retrospective multicenter study involving tertiary centers across India. We enrolled children between 1 month to 18 years of age with genetically confirmed/clinically probable HMNDYT. Clinical, laboratory profile, genetic testing, treatment details, and outcomes scored by treating physicians on a Likert scale were recorded. Results We enrolled 27 children (19 girls). Fourteen harbored SLC30A10 mutations; nine had SLC39A14 mutations. The SLC39A14 cohort had lower median age at onset (1.3 [interquartile range (IQR), 0.7-5.5] years) versus SLC30A10 cohort (2.0 [IQR, 1.5-5.1] years). The most frequent neurological features were dystonia (100%; n = 27), gait abnormality (77.7%; n = 21), falls (66.7%; n = 18), and parkinsonism (59.3%; n = 16). Median serum manganese (Mn) levels among SLC39A14 (44.9 [IQR, 27.3-147.7] mcg/L) cohort were higher than SLC30A10 (29.4 [17.1-42.0] mcg/L); median hemoglobin was higher in SLC30A10 (16.3 [IQR, 15.2-17.5] g/dL) versus SLC39A14 cohort (12.5 [8.8-13.2] g/dL). Hepatic involvement and polycythaemia were observed exclusively in SLC30A10 variants. A total of 26/27 children underwent chelation with disodium calcium edetate. Nine demonstrated some improvement, three stabilized, two had marked improvement, and one had normalization. Children with SLC39A14 mutations had poorer response. Two children died and nine were lost to follow-up. Conclusions We found female predominance. Children with SLC39A14 mutations presented at younger age and responded less favorably to chelation compared to SLC30A10 mutations. There is emerging need to better define management strategies, especially in low resource settings.
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- 2021
27. AOPEP Homozygous Loss-of-Function Variant in an Indian Patient with Early-Onset Generalized Dystonia
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Christina Fevga, Federico Ferraro, Guido J. Breedveld, Charulata Savant Sankhla, and Vincenzo Bonifati
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Dystonia ,Neurology ,Asian People ,Dystonic Disorders ,Homozygote ,Mutation ,Humans ,Neurology (clinical) - Published
- 2021
28. Neuropathologic Findings in a Patient with Juvenile-Onset Levodopa-Responsive Parkinsonism Due to ATP13A2 Mutation
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Ellen Gelpi, Roberta Diehl Rodriguez, Ricardo Nitrini, Egberto Reis Barbosa, Vincenzo Bonifati, Hsin Fen Chien, Carlos Augusto Pasqualucci, and Clinical Genetics
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Mutation ,Levodopa ,Pathology ,medicine.medical_specialty ,Neurodegeneration with brain iron accumulation ,business.industry ,Parkinsonism ,medicine.disease_cause ,medicine.disease ,Supranuclear gaze palsy ,Kufor Rakeb syndrome ,mental disorders ,Medicine ,Missense mutation ,Neuronal ceroid lipofuscinosis ,Neurology (clinical) ,business ,medicine.drug - Abstract
ObjectiveTo describe the postmortem neuropathologic findings of a patient with Kufor Rakeb syndrome (KRS) due to ATP13A2 mutation. KRS is characterized by juvenile-onset levodopa-responsive parkinsonism associated with pyramidal signs, supranuclear gaze palsy, and cognitive impairment.MethodsA detailed neuropathologic analysis of the brain was performed. The patient had a genetically confirmed ATP13A2 homozygous missense mutation and died at age 38 years, which was 26 years after the onset of his symptoms.ResultsThe main brain neuropathologic findings were widespread neuronal and glial lipofuscin accumulation with no Lewy body–type inclusions and absence of α-synuclein–positive, tau-positive, β-amyloid–positive, and TDP-43 protein–positive pathologies. Sparse iron deposits were observed in several brain areas, but no obvious axonal spheroids were identified.DiscussionThis is to our knowledge the first KRS postmortem neuropathologic description. Iron deposits were found but not associated with increased axonal spheroids, as frequently observed in neurodegeneration with brain iron accumulation. ATP13A2 mutations have been described in patients with neuronal ceroid lipofuscinosis (CLN). Moreover, animal models with these mutations develop neurodegenerative disorders with CLN pathology. Therefore, our findings support that ATP13A2 mutations may be considered a genetic etiology of neuronal lipofuscinosis.
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- 2021
29. Family History is Associated with Phenotype in Dementia with Lewy Bodies
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Susanne E. Hoogers, Leonie J.M. Vergouw, Marleen van de Beek, Gerwin Roks, Brechje Bosman, Vincenzo Bonifati, Frank Jan de Jong, John C. van Swieten, Mariet Salomé, Afina W. Lemstra, Inger van Steenoven, Amsterdam Neuroscience - Neurodegeneration, Neurology, Clinical chemistry, and Clinical Genetics
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Lewy Body Disease ,Male ,0301 basic medicine ,Oncology ,medicine.medical_specialty ,phenotype ,Dementia with Lewy bodies ,Kaplan-Meier Estimate ,Disease ,survival ,behavioral disciplines and activities ,03 medical and health sciences ,0302 clinical medicine ,Cerebrospinal fluid ,Alzheimer Disease ,Internal medicine ,mental disorders ,medicine ,Humans ,Dementia ,Cognitive Dysfunction ,Family ,Age of Onset ,Cognitive decline ,Family history ,Aged ,Retrospective Studies ,Aged, 80 and over ,family history ,business.industry ,Proportional hazards model ,General Neuroscience ,General Medicine ,Middle Aged ,Prognosis ,medicine.disease ,Survival Analysis ,Phenotype ,nervous system diseases ,Psychiatry and Mental health ,Clinical Psychology ,030104 developmental biology ,Female ,Geriatrics and Gerontology ,business ,Biomarkers ,030217 neurology & neurosurgery ,Research Article - Abstract
It is currently unknown whether patients with dementia with Lewy bodies (DLB) with relatives with dementia or Parkinson's disease (familial DLB patients) have a different phenotype than sporadic DLB patients. In this study, we aimed to examine disease onset, rate of cognitive decline, survival, and Alzheimer's disease (AD) biomarkers in patients with familial DLB (n = 154) and sporadic DLB (n = 137), using linear mixed model analysis and Cox regression analysis, among others. Familial patients had a shorter survival (8.0 years) and more often elevated cerebrospinal fluid AD biomarkers (47%) than sporadic patients (9.0 years; p≤0.001; 30%, p = 0.037). Our findings suggest that genetic factors are important in DLB and that the identification of new genetic factors will probably improve the prediction of prognosis.
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- 2020
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30. Neuropathologic Findings in a Patient With Juvenile-Onset Levodopa-Responsive Parkinsonism Due to
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Hsin Fen, Chien, Roberta Diehl, Rodriguez, Vincenzo, Bonifati, Ricardo, Nitrini, Carlos Augusto, Pasqualucci, Ellen, Gelpi, and Egberto Reis, Barbosa
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Adult ,Male ,Proton-Translocating ATPases ,Parkinsonian Disorders ,Mutation, Missense ,Brain ,Humans ,Autopsy - Abstract
To describe the postmortem neuropathologic findings of a patient with Kufor Rakeb syndrome (KRS) due toA detailed neuropathologic analysis of the brain was performed. The patient had a genetically confirmedThe main brain neuropathologic findings were widespread neuronal and glial lipofuscin accumulation with no Lewy body-type inclusions and absence ofThis is to our knowledge the first KRS postmortem neuropathologic description. Iron deposits were found but not associated with increased axonal spheroids, as frequently observed in neurodegeneration with brain iron accumulation.
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- 2021
31. False negatives in GBA1 sequencing due to polymerase dependent allelic imbalance
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Peter T. Lansbury, Valerie Christina Cullen, Geert Jan Groeneveld, Vincenzo Bonifati, Arnoud Schmitz, Jonas M. den Heijer, Dana C. Hilt, and Clinical Genetics
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0301 basic medicine ,Genotype ,DNA polymerase ,Parkinson's disease ,Science ,Allelic Imbalance ,Polymerase Chain Reaction ,Article ,DNA sequencing ,law.invention ,03 medical and health sciences ,Medical research ,0302 clinical medicine ,law ,Genetics research ,Genetics ,Humans ,Sequencing ,Clinical genetics ,Movement disorders ,Gene ,Allele frequency ,Polymerase chain reaction ,Polymerase ,Multidisciplinary ,biology ,Medical genetics ,Neurodegenerative diseases ,Parkinson Disease ,Exons ,Sequence Analysis, DNA ,Clinical trial design ,030104 developmental biology ,Neurology ,Mutation ,biology.protein ,Glucosylceramidase ,Genetic markers ,Medicine ,Primer (molecular biology) ,Biomarkers ,030217 neurology & neurosurgery - Abstract
A variant in the GBA1 gene is one of the most common genetic risk factors to develop Parkinson’s disease (PD). Here the serendipitous finding is reported of a polymerase dependent allelic imbalance when using next generation sequencing, potentially resulting in false-negative results when the allele frequency falls below the variant calling threshold (by default commonly at 30%). The full GBA1 gene was sequenced using next generation sequencing on saliva derived DNA from PD patients. Four polymerase chain reaction conditions were varied in twelve samples, to investigate the effect on allelic imbalance: (1) the primers (n = 4); (2) the polymerase enzymes (n = 2); (3) the primer annealing temperature (Ta) specified for the used polymerase; and (4) the amount of DNA input. Initially, 1295 samples were sequenced using Q5 High-Fidelity DNA Polymerase. 112 samples (8.6%) had an exonic variant and an additional 104 samples (8.0%) had an exonic variant that did not pass the variant frequency calling threshold of 30%. After changing the polymerase to TaKaRa LA Taq DNA Polymerase Hot-Start Version: RR042B, all samples had an allele frequency passing the calling threshold. Allele frequency was unaffected by a change in primer, annealing temperature or amount of DNA input. Sequencing of the GBA1 gene using next generation sequencing might be susceptible to a polymerase specific allelic imbalance, which can result in a large amount of flase-negative results. This was resolved in our case by changing the polymerase. Regions displaying low variant calling frequencies in GBA1 sequencing output in previous and future studies might warrant additional scrutiny.
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- 2021
32. The commercial genetic testing landscape for Parkinson's disease
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Lola Cook, Jeanine Schulze, Jennifer Verbrugge, James C. Beck, Karen S. Marder, Rachel Saunders-Pullman, Christine Klein, Anna Naito, Roy N. Alcalay, Alexis Brice, Amasi Kumeh, Andrew B. West, Andrew Singleton, Birgitt Schüle, Brian Fiske, Carolin Gabbert, Connie Marras, Cornelis Blauwendraat, Courtney Thaxton, Dario Alessi, David Craig, Edward A. Fon, Emily Forbes, Enza Maria Valente, Esther Sammler, Gill Chao, Giulietta Riboldi, Houda Zghal Elloumi, Ignacio Mata, Jamie C. Fong, Jean-Christophe Corvol, Joshua Shulman, Judith Peterschmitt, Karen Marder, Katja Lohmann, Kelly Nudelman, Lara Lange, Mark R. Cookson, Martha Nance, Matthew Farrer, Melina Grigorian, Michael A. Schwarzschild, Niccolo Mencacci, Owen Ross, Pramod Mistry, Priscila Hodges, Rachel Blake, S. Pablo Sardi, Sali Farhan, Samuel Strom, Shalini Padmanabhan, Shruthi Mohan, Simonne Longerich, Susanne Schneider, Suzanne Lesage, Tanya Bardakjian, Tatiana Foroud, Thomas Courtin, Thomas Tropea, Yunlong Liu, Ziv Gan-Or, Ali S. Shalash, Anne Hall, Avner Thaler, Carolyn M. Sue, Deborah Mascalzoni, Deborah Raymond, Emilia Mabel Gatto, Gian D. Pal, Inke König, Ivana Novakovic, Marcelo Merello, Mehri Salari, Niccolo Emanuele Mencacci, Nobutaka Hattori, Oksana Suchowersky, Soraya Bardien, Sun Ju Chung, Tatyana Simuni, Timothy Lynch, Vincenzo Bonifati, and Clinical Genetics
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medicine.medical_specialty ,Parkinson's disease ,Genetic testing ,Disease ,Article ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Medicine ,Humans ,Multi-gene panels ,Genetic Predisposition to Disease ,Genetic Testing ,030304 developmental biology ,0303 health sciences ,medicine.diagnostic_test ,business.industry ,Parkinsonism ,PARK7 ,Neurosciences ,Parkinson Disease ,medicine.disease ,LRRK2 ,Clinical laboratories ,3. Good health ,Neurology ,Atypical Parkinsonism ,Neurology (clinical) ,Geriatrics and Gerontology ,business ,030217 neurology & neurosurgery ,Dystonic disorder ,Laboratories, Clinical ,Neurovetenskaper - Abstract
Introduction There have been no specific guidelines regarding which genes should be tested in the clinical setting for Parkinson's disease (PD) or parkinsonism. We evaluated the types of clinical genetic testing offered for PD as the first step of our gene curation. Methods The National Institutes of Health (NIH) Genetic Testing Registry (GTR) was queried on 12/7/2020 to identify current commercial PD genetic test offerings by clinical laboratories, internationally. Results We identified 502 unique clinical genetic tests for PD, from 28 Clinical Laboratory Improvement Amendments (CLIA)-approved clinical laboratories. These included 11 diagnostic PD panels. The panels were notable for their differences in size, ranging from 5 to 62 genes. Five genes for variant query were included in all panels (SNCA, PRKN, PINK-1, PARK7 (DJ1), and LRRK2). Notably, the addition of the VPS35 and GBA genes was variable. Panel size differences stemmed from inclusion of genes linked to atypical parkinsonism and dystonia disorders, and genes in which the link to PD causation is controversial. Conclusion There is an urgent need for expert opinion regarding which genes should be included in a commercial laboratory multi-gene panel for PD. Deborah Mascalzoni is part of Movement Society Disorder (MDS) Task Force on Recommendations for Clinical Genetic Testing in Parkinson's Disease
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- 2021
33. LRP10 interacts with SORL1 in the intracellular vesicle trafficking pathway in non-neuronal brain cells and localises to Lewy bodies in Parkinson’s disease and dementia with Lewy bodies
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Vincenzo Bonifati, Valerie Boumeester, Domenico Natale, Ana Carreras Mascaro, Martyna M. Grochowska, Pietro Cortelli, Agnita J.W. Boon, Piero Parchi, Wiggert A. van Cappellen, Guido J. Breedveld, Wilma D.J. van de Berg, Wim Mandemakers, Hanneke Geut, Dario R. Alessi, Esther Sammler, Anneke J.A. Kievit, Grochowska M.M., Carreras Mascaro A., Boumeester V., Natale D., Breedveld G.J., Geut H., van Cappellen W.A., Boon A.J.W., Kievit A.J.A., Sammler E., Parchi P., Cortelli P., Alessi D.R., van de Berg W.D.J., Bonifati V., Mandemakers W., Netherlands Institute for Neuroscience (NIN), Clinical Genetics, Erasmus MC other, Neurology, Anatomy and neurosciences, and Amsterdam Neuroscience - Neurodegeneration
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Adult ,Lewy Body Disease ,Parkinson's disease ,LRP10 ,Induced Pluripotent Stem Cells ,Membrane Transport Protein ,Substantia nigra ,Vesicle trafficking ,Biology ,Induced Pluripotent Stem Cell ,Pathology and Forensic Medicine ,Progressive supranuclear palsy ,Cellular and Molecular Neuroscience ,SDG 3 - Good Health and Well-being ,medicine ,Dementia ,Humans ,LDL-Receptor Related Protein ,LDL-Receptor Related Proteins ,Aged ,Neurons ,Lewy Bodie ,Original Paper ,Neurodegenerative Disease ,Dementia with Lewy bodies ,Dementia with Lewy bodies (DLB) ,Neurodegeneration ,Membrane Transport Proteins ,Brain ,Genetic Variation ,Intracellular vesicle ,Neurodegenerative Diseases ,Parkinson Disease ,Human brain ,Middle Aged ,Neuron ,medicine.disease ,Parkinson’s disease (PD) ,Cell biology ,medicine.anatomical_structure ,Astrocytes ,Lewy Bodies ,Neurology (clinical) ,Astrocyte ,Human - Abstract
Loss-of-function variants in the low-density lipoprotein receptor-related protein 10 (LRP10) gene have been associated with autosomal-dominant Parkinson’s disease (PD), PD dementia, and dementia with Lewy bodies (DLB). Moreover, LRP10 variants have been found in individuals diagnosed with progressive supranuclear palsy and amyotrophic lateral sclerosis. Despite this genetic evidence, little is known about the expression and function of LRP10 protein in the human brain under physiological or pathological conditions. To better understand how LRP10 variants lead to neurodegeneration, we first performed an in-depth characterisation of LRP10 expression in post-mortem brains and human-induced pluripotent stem cell (iPSC)-derived astrocytes and neurons from control subjects. In adult human brain, LRP10 is mainly expressed in astrocytes and neurovasculature but undetectable in neurons. Similarly, LRP10 is highly expressed in iPSC-derived astrocytes but cannot be observed in iPSC-derived neurons. In astrocytes, LRP10 is present at trans-Golgi network, plasma membrane, retromer, and early endosomes. Interestingly, LRP10 also partially co-localises and interacts with sortilin-related receptor 1 (SORL1). Furthermore, although LRP10 expression and localisation in the substantia nigra of most idiopathic PD and DLB patients and LRP10 variant carriers diagnosed with PD or DLB appeared unchanged compared to control subjects, significantly enlarged LRP10-positive vesicles were detected in a patient carrying the LRP10 p.Arg235Cys variant. Last, LRP10 was detected in Lewy bodies (LB) at late maturation stages in brains from idiopathic PD and DLB patients and in LRP10 variant carriers. In conclusion, high LRP10 expression in non-neuronal cells and undetectable levels in neurons of control subjects indicate that LRP10-mediated pathogenicity is initiated via cell non-autonomous mechanisms, potentially involving the interaction of LRP10 with SORL1 in vesicle trafficking pathways. Together with the specific pattern of LRP10 incorporation into mature LBs, these data support an important mechanistic role for disturbed vesicle trafficking and loss of LRP10 function in neurodegenerative diseases.
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- 2021
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34. Correcting differential gene expression analysis for cyto-architectural alterations in substantia nigra of Parkinson’s disease patients reveals known and potential novel disease-associated genes and pathways
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Federico, Ferraro, primary, Christina, Fevga, additional, Vincenzo, Bonifati, additional, Wim, Mandemakers, additional, Ahmed, Mahfouz, additional, and Marcel, Reinders, additional
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- 2021
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35. Low prevalence of known pathogenic mutations in dominant PD genes: A Swedish multicenter study
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Oskar Hansson, Håkan Widner, Jonas Kristensen, Lars Forsgren, Olof Sydow, Vincenzo Bonifati, Hans Nissbrandt, Jan Linder, Itzia Jimenez-Ferrer, Emil Ygland Rödström, Ropafadzo Mzezewa, Maria Soller, Anna Zettergren, Owen A. Ross, Karin Wirdefeldt, L.-A. Brodin, Per Svenningsson, Kajsa Brolin, Andreas Puschmann, Guido J. Breedveld, Maria Swanberg, Andrea Carmine Belin, Emma Mårtensson, Mathias Toft, Per Odin, Elin Lundblad-Andersson, Tampere University, and Clinical Genetics
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0301 basic medicine ,DNA Copy Number Variations ,Population ,medicine.disease_cause ,Leucine-Rich Repeat Serine-Threonine Protein Kinase-2 ,03 medical and health sciences ,0302 clinical medicine ,Gene duplication ,Databases, Genetic ,Medicine ,Humans ,Genetic Predisposition to Disease ,Family history ,education ,Medicinsk genetik ,Genetics ,Sweden ,education.field_of_study ,Mutation ,business.industry ,Family aggregation ,Parkinson Disease ,LRRK2 ,Ashkenazi jews ,030104 developmental biology ,Neurology ,Jews ,Cohort ,alpha-Synuclein ,Neurology (clinical) ,Geriatrics and Gerontology ,business ,Medical Genetics ,030217 neurology & neurosurgery - Abstract
OBJECTIVE: To determine the frequency of mutations known to cause autosomal dominant Parkinson disease (PD) in a series with more than 10% of Sweden's estimated number of PD patients. METHODS: The Swedish Parkinson Disease Genetics Network was formed as a national multicenter consortium of clinical researchers who together have access to DNA from a total of 2,206 PD patients; 85.4% were from population-based studies. Samples were analyzed centrally for known pathogenic mutations in SNCA (duplications/triplications, p.Ala30Pro, p.Ala53Thr) and LRRK2 (p.Asn1437His, p.Arg1441His, p.Tyr1699Cys, p.Gly2019Ser, p.Ile2020Thr). We compared the frequency of these mutations in Swedish patients with published PD series and the gnomAD database. RESULTS: A family history of PD in first- and/or second-degree relatives was reported by 21.6% of participants. Twelve patients (0.54%) carried LRRK2 p.(Gly2019Ser) mutations, one patient (0.045%) an SNCA duplication. The frequency of LRRK2 p.(Gly2019Ser) carriers was 0.11% in a matched Swedish control cohort and a similar 0.098% in total gnomAD, but there was a marked difference between ethnicities in gnomAD, with 42-fold higher frequency among Ashkenazi Jews than all others combined. CONCLUSIONS: In relative terms, the LRRK2 p.(Gly2019Ser) variant is the most frequent mutation among Swedish or international PD patients, and in gnomAD. SNCA duplications were the second most common of the mutations examined. In absolute terms, however, these known pathogenic variants in dominant PD genes are generally very rare and can only explain a minute fraction of familial aggregation of PD. Additional genetic and environmental mechanisms may explain the frequent co-occurrence of PD in close relatives. publishedVersion
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- 2019
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36. LRP10 variants in progressive supranuclear palsy
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Leonie J.M. Vergouw, Li-San Wang, Guido J. Breedveld, Vincenzo Bonifati, Marialuisa Quadri, Gerard D. Schellenberg, Wang Z. Chiu, John C. van Swieten, Frank Jan de Jong, Adam C. Naj, Agnita J.W. Boon, Dennis W. Dickson, Shamiram Melhem, Owen A. Ross, Demy J.S. Kuipers, Elizabeth Mlynarksi, Laura Donker Kaat, Laura B. Cantwell, Neurology, and Clinical Genetics
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0301 basic medicine ,Male ,Aging ,medicine.medical_specialty ,Disease ,Article ,Progressive supranuclear palsy ,Cohort Studies ,03 medical and health sciences ,symbols.namesake ,0302 clinical medicine ,Internal medicine ,Exome Sequencing ,medicine ,Humans ,LDL-Receptor Related Proteins ,Aged ,Sanger sequencing ,business.industry ,Dementia with Lewy bodies ,General Neuroscience ,Genetic Variation ,Exons ,Middle Aged ,medicine.disease ,eye diseases ,030104 developmental biology ,Cohort ,symbols ,Female ,Neurology (clinical) ,Supranuclear Palsy, Progressive ,Geriatrics and Gerontology ,business ,Validation cohort ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
The aim of this study was to explore whether variants in LRP10, recently associated with Parkinson's disease and dementia with Lewy bodies, are observed in 2 large cohorts (discovery and validation cohort) of patients with progressive supranuclear palsy (PSP). A total of 950 patients with PSP were enrolled: 246 patients with PSP (n = 85 possible (35%), n = 128 probable (52%), n = 33 definite (13%)) in the discovery cohort and 704 patients with definite PSP in the validation cohort. Sanger sequencing of all LRP10 exons and exon-intron boundaries was performed in the discovery cohort, and whole-exome sequencing was performed in the validation cohort. Two patients from the discovery cohort and 8 patients from the validation cohort carried a rare, heterozygous, and possibly pathogenic LRP10 variant (p.Gly326Asp, p.Asp389Asn, and p.Arg158His, p.Cys220Tyr, p.Thr278Ala, p.Gly306Asp, p.Glu486Asp, p.Arg554∗, p.Arg661Cys). In conclusion, possibly pathogenic LRP10 variants occur in a small fraction of patients with PSP and may be overrepresented in these patients compared with controls. This suggests that possibly pathogenic LRP10 variants may play a role in the development of PSP.
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- 2020
37. LRP10 interacts with SORL1 in the intracellular vesicle trafficking pathway in non-neuronal brain cells and localises to Lewy bodies in Parkinson’s disease and dementia with Lewy bodies
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M.M. (Martyna) Grochowska, A. (Ana) Carreras Mascaro, V. (Valerie) Boumeester, D. (Domenico) D. Natale, G.J. (Guido) Breedveld, Hanneke Geut, W.A. (Gert) van Cappellen, A.J.W. (Agnita) Boon, J.A. (Anneke) Kievit, Esther Sammler, Netherlands Brain Bank, Piero Parchi, Pietro Cortelli, Dario R. Alessi, W. D.J. van de Berg, V. (Vincenzo) Bonifati, W.J. (Wim) Mandemakers, M.M. (Martyna) Grochowska, A. (Ana) Carreras Mascaro, V. (Valerie) Boumeester, D. (Domenico) D. Natale, G.J. (Guido) Breedveld, Hanneke Geut, W.A. (Gert) van Cappellen, A.J.W. (Agnita) Boon, J.A. (Anneke) Kievit, Esther Sammler, Netherlands Brain Bank, Piero Parchi, Pietro Cortelli, Dario R. Alessi, W. D.J. van de Berg, V. (Vincenzo) Bonifati, and W.J. (Wim) Mandemakers
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Loss-of-function variants in the low-density lipoprotein receptor-related protein 10 (LRP10) gene have been associated with autosomal-dominant Parkinson’s disease (PD), PD dementia, and dementia with Lewy bodies (DLB). Moreover, LRP10 variants have been found in individuals diagnosed with progressive supranuclear palsy and amyotrophic lateral sclerosis. Despite this genetic evidence, little is known about the expression and function of LRP10 protein in the human brain under physiological or pathological conditions. To better understand how LRP10 variants lead to neurodegeneration, we first performed an in-depth characterisation of LRP10 expression in post-mortem brains and human-induced pluripotent stem cell (iPSC)-derived astrocytes and neurons from control subjects. In adult human brain, LRP10 is mainly expressed in astrocytes and neurovasculature but undetectable in neurons. Similarly, LRP10 is highly expressed in iPSC-derived astrocytes but cannot be observed in iPSC-derived neurons. In astrocytes, LRP10 is present at trans-Golgi network, plasma membrane, retromer, and early endosomes. Interestingly, LRP10 also partially co-localises and interacts with sortilin-related receptor 1 (SORL1). Furthermore, although LRP10 expression and localisation in the substantia nigra of most idiopathic PD and DLB patients and LRP10 variant carriers diagnosed with PD or DLB appeared unchanged compared to control subjects, significantly enlarged LRP10-positive vesicles were detected in a patient carrying the LRP10 p.Arg235Cys variant. Last, LRP10 was detected in Lewy bodies (LB) at late maturation stages in brains from idiopathic PD and DLB patients and in LRP10 variant carriers. In conclusion, high LRP10 expression in non-neuronal cells and undetectable levels in neurons of control subjects indicate that LRP10-mediated pathogenicity is initiated via cell non-autonomous mechanisms, potentially involving the interaction of LRP10 with SORL1 in vesicle trafficking pathways. Togeth
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- 2021
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38. PTRHD1 Loss-of-function mutation in an african family with juvenile-onset Parkinsonism and intellectual disability
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Vincenzo Bonifati, Jonathan Carr, Rick van Minkelen, Wilfred F. J. van IJcken, Guido J. Breedveld, Demy J.S. Kuipers, Rutger W W Brouwer, Boiketlo Sebate, Marialuisa Quadri, Pearl Thomas, Marjon van Slegtenhorst, and Soraya Bardien
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0301 basic medicine ,Genetics ,Sanger sequencing ,Parkinsonism ,Disease ,Biology ,medicine.disease ,Disease gene identification ,Frameshift mutation ,03 medical and health sciences ,symbols.namesake ,030104 developmental biology ,0302 clinical medicine ,Neurology ,Genetic linkage ,Intellectual disability ,medicine ,symbols ,Missense mutation ,Neurology (clinical) ,030217 neurology & neurosurgery - Abstract
Background The genetic bases of PD in sub-Saharan African (SSA) populations remain poorly characterized, and analysis of SSA families with PD might lead to the discovery of novel disease-related genes. Objectives To investigate the clinical features and identify the disease-causing gene in a black South African family with 3 members affected by juvenile-onset parkinsonism and intellectual disability. Methods Clinical evaluation, neuroimaging studies, whole-exome sequencing, homozygosity mapping, two-point linkage analysis, and Sanger sequencing of candidate variants. Result A homozygous 28-nucleotide frameshift deletion in the PTRHD1 coding region was identified in the 3 affected family members and linked to the disease with genome-wide significant evidence. PTRHD1 was recently nominated as the disease-causing gene in two Iranian families, each containing 2 siblings with similar phenotypes and homozygous missense mutations. Conclusion Together with the previous reports, we provide conclusive evidence that loss-of-function mutations in PTRHD1 cause autosomal-recessive juvenile parkinsonism and intellectual disability. © 2018 International Parkinson and Movement Disorder Society.
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- 2018
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39. Alteration of endosomal trafficking is associated with early-onset parkinsonism caused by SYNJ1 mutations
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Chiara Criscuolo, Marina Picillo, Paolo Remondelli, Ornella Moltedo, Anna De Rosa, Giuseppe De Michele, Paolo Barone, Lucio Nitsch, Simona Paladino, Giovanna Maria Pierantoni, Vincenzo Bonifati, Giuseppina Amodio, Dominga Fasano, Maria Teresa Pellecchia, Silvia Parisi, Clinical Genetics, Fasano, Dominga, Parisi, Silvia, Pierantoni, Giovanna Maria, De Rosa, Anna, Picillo, Marina, Amodio, Giuseppina, Pellecchia, Maria Teresa, Barone, Paolo, Moltedo, Ornella, Bonifati, Vincenzo, De Michele, Giuseppe, Nitsch, Lucio, Remondelli, Paolo, Criscuolo, Chiara, and Paladino, Simona
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0301 basic medicine ,Cancer Research ,Cell type ,Parkinson's disease ,Endosome ,Blotting, Western ,Immunology ,Endocytic cycle ,Endosomes ,Article ,Cell Line ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,RNA interference ,medicine ,Humans ,Epidermal growth factor receptor ,lcsh:QH573-671 ,Cells, Cultured ,biology ,lcsh:Cytology ,Parkinsonism ,Synaptogianin 1, endosomal trafficking, membrane trafficking, Parkinson's disease, PARK20 ,Parkinson Disease ,Cell Biology ,Fibroblasts ,medicine.disease ,Phosphoric Monoester Hydrolases ,Cell biology ,030104 developmental biology ,Microscopy, Fluorescence ,Mutation ,biology.protein ,RNA Interference ,Ectopic expression ,030217 neurology & neurosurgery ,HeLa Cells ,Signal Transduction - Abstract
Recently, a new form of autosomal recessive early-onset parkinsonism (PARK20), due to mutations in the gene encoding the phosphoinositide phosphatase, Synaptojanin 1 (Synj1), has been reported. Several genes responsible for hereditary forms of Parkinson’s disease are implicated in distinct steps of the endolysosomal pathway. However, the nature and the degree of endocytic membrane trafficking impairment in early-onset parkinsonism remains elusive. Here, we show that depletion of Synj1 causes drastic alterations of early endosomes, which become enlarged and more numerous, while it does not affect the morphology of late endosomes both in non-neuronal and neuronal cells. Moreover, Synj1 loss impairs the recycling of transferrin, while it does not alter the trafficking of the epidermal growth factor receptor. The ectopic expression of Synj1 restores the functions of early endosomes, and rescues these trafficking defects in depleted cells. Importantly, the same alterations of early endosomal compartments and trafficking defects occur in fibroblasts of PARK20 patients. Our data indicate that Synj1 plays a crucial role in regulating the homeostasis and functions of early endosomal compartments in different cell types, and highlight defective cellular pathways in PARK20. In addition, they strengthen the link between endosomal trafficking and Parkinson’s disease.
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- 2018
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40. LRP10 genetic variants in familial Parkinson's disease and dementia with Lewy bodies: a genome-wide linkage and sequencing study
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Marialuisa Quadri, Wim Mandemakers, Martyna M Grochowska, Roy Masius, Hanneke Geut, Edito Fabrizio, Guido J Breedveld, Demy Kuipers, Michelle Minneboo, Leonie J M Vergouw, Ana Carreras Mascaro, Ekaterina Yonova-Doing, Erik Simons, Tianna Zhao, Alessio B Di Fonzo, Hsiu-Chen Chang, Piero Parchi, Marta Melis, Leonor Correia Guedes, Chiara Criscuolo, Astrid Thomas, Rutger W W Brouwer, Daphne Heijsman, Angela M T Ingrassia, Giovanna Calandra Buonaura, Janneke P Rood, Sabina Capellari, Annemieke J Rozemuller, Marianna Sarchioto, Hsin Fen Chien, Nicola Vanacore, Simone Olgiati, Yah-Huei Wu-Chou, Tu-Hsueh Yeh, Agnita J W Boon, Susanne E Hoogers, Mehrnaz Ghazvini, Arne S IJpma, Wilfred F J van IJcken, Marco Onofrj, Paolo Barone, David J Nicholl, Andreas Puschmann, Michele De Mari, Anneke J Kievit, Egberto Barbosa, Giuseppe De Michele, Danielle Majoor-Krakauer, John C van Swieten, Frank J de Jong, Joaquim J Ferreira, Giovanni Cossu, Chin-Song Lu, Giuseppe Meco, Pietro Cortelli, Wilma D J van de Berg, Vincenzo Bonifati, Anneke J.A. Kievit, Agnita J.W. Boon, Janneke P.A Rood, Leonie J.M. Vergouw, Frank J. de Jong, John C. van Swieten, Francesco U.S. Mattace-Raso, Klaus L. Leenders, Joaquim J. Ferreira, Emil Ygland, Christer Nilsson, Hsin F. Chien, Laura Bannach Jardim, Carlos R.M. Rieder, Leonardo Lopiano, Cristina Tassorelli, Claudio Pacchetti, Giulio Riboldazzi, Giorgio Bono, Cristoforo Comi, Alessandro Padovani, Barbara Borroni, Francesco Raudino, Emiliana Fincati, Michele Tinazzi, Alberto Bonizzato, Carlo Ferracci, Alessio Dalla Libera, Giovanni Abbruzzese, Roberto Marconi, Marco Guidi, Giovanni Fabbrini, Alfredo Berardelli, Fabrizio Stocchi, Laura Vacca, Marina Picillo, Claudia Dell'Aquila, Gianni Iliceto, Vincenzo Toni, Giorgio Trianni, Monica Gagliardi, Grazia Annesi, Aldo Quattrone, Valeria Saddi, Gianni Cossu, Maurizio Melis, Quadri, Marialuisa, Mandemakers, Wim, Grochowska, Martyna M, Masius, Roy, Geut, Hanneke, Fabrizio, Edito, Breedveld, Guido J, Kuipers, Demy, Minneboo, Michelle, Vergouw, Leonie J M, Carreras Mascaro, Ana, Yonova-Doing, Ekaterina, Simons, Erik, Zhao, Tianna, Di Fonzo, Alessio B, Chang, Hsiu-Chen, Parchi, Piero, Melis, Marta, Correia Guedes, Leonor, Criscuolo, Chiara, Thomas, Astrid, Brouwer, Rutger W W, Heijsman, Daphne, Ingrassia, Angela M T, Calandra Buonaura, Giovanna, Rood, Janneke P, Capellari, Sabina, Rozemuller, Annemieke J, Sarchioto, Marianna, Fen Chien, Hsin, Vanacore, Nicola, Olgiati, Simone, Wu-Chou, Yah-Huei, Yeh, Tu-Hsueh, Boon, Agnita J W, Hoogers, Susanne E, Ghazvini, Mehrnaz, IJpma, Arne S, van IJcken, Wilfred F J, Onofrj, Marco, Barone, Paolo, Nicholl, David J, Puschmann, Andrea, De Mari, Michele, Kievit, Anneke J, Barbosa, Egberto, De Michele, Giuseppe, Majoor-Krakauer, Danielle, van Swieten, John C, de Jong, Frank J, Ferreira, Joaquim J, Cossu, Giovanni, Lu, Chin-Song, Meco, Giuseppe, Cortelli, Pietro, van de Berg, Wilma D J, Bonifati, Vincenzo, Netherlands Institute for Neuroscience (NIN), Amsterdam Neuroscience - Neurodegeneration, Neurology, Anatomy and neurosciences, Pathology, Clinical Genetics, Erasmus MC other, Cell biology, Developmental Biology, and Ijpma, Arne S
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Lewy Body Disease ,Male ,Pluripotent Stem Cells ,0301 basic medicine ,Proband ,Heterozygote ,medicine.medical_specialty ,Candidate gene ,Parkinson's disease ,Genetic Linkage ,Disease ,03 medical and health sciences ,0302 clinical medicine ,Genetic linkage ,Internal medicine ,medicine ,Journal Article ,Humans ,Dementia ,Family ,RNA, Messenger ,Family history ,LDL-Receptor Related Proteins ,Chromosomes, Human, Pair 14 ,Dementia with Lewy bodies ,business.industry ,Brain ,Parkinson Disease ,Middle Aged ,medicine.disease ,Pedigree ,030104 developmental biology ,Italy ,Female ,Neurology (clinical) ,business ,030217 neurology & neurosurgery ,Genome-Wide Association Study - Abstract
Summary Background Most patients with Parkinson's disease, Parkinson's disease dementia, and dementia with Lewy bodies do not carry mutations in known disease-causing genes. The aim of this study was to identify a novel gene implicated in the development of these disorders. Methods Our study was done in three stages. First, we did genome-wide linkage analysis of an Italian family with dominantly inherited Parkinson's disease to identify the disease locus. Second, we sequenced the candidate gene in an international multicentre series of unrelated probands who were diagnosed either clinically or pathologically with Parkinson's disease, Parkinson's disease dementia, or dementia with Lewy bodies. As a control, we used gene sequencing data from individuals with abdominal aortic aneurysms (who were not examined neurologically). Third, we enrolled an independent series of patients diagnosed clinically with Parkinson's disease and controls with no signs or family history of Parkinson's disease, Parkinson's disease dementia, or dementia with Lewy bodies from centres in Portugal, Sardinia, and Taiwan, and screened them for specific variants. We also did mRNA and brain pathology studies in three patients from the international multicentre series carrying disease-associated variants, and we did functional protein studies in in-vitro models, including neurons from induced pluripotent stem-like cells. Findings Molecular studies were done between Jan 1, 2008, and Dec 31, 2017. In the initial kindred of ten affected Italian individuals (mean age of disease onset 59·8 years [SD 8·7]), we detected significant linkage of Parkinson's disease to chromosome 14 and nominated LRP10 as the disease-causing gene. Among the international series of 660 probands, we identified eight individuals (four with Parkinson's disease, two with Parkinson's disease dementia, and two with dementia with Lewy bodies) who carried different, rare, potentially pathogenic LRP10 variants; one carrier was found among 645 controls with abdominal aortic aneurysms. In the independent series, two of these eight variants were detected in three additional Parkinson's disease probands (two from Sardinia and one from Taiwan) but in none of the controls. Of the 11 probands from the international and independent cohorts with LRP10 variants, ten had a positive family history of disease and DNA was available from ten affected relatives (in seven of these families). The LRP10 variants were present in nine of these ten relatives, providing independent—albeit limited—evidence of co-segregation with disease. Post-mortem studies in three patients carrying distinct LRP10 variants showed severe Lewy body pathology. Of nine variants identified in total (one in the initial family and eight in stage 2), three severely affected LRP10 expression and mRNA stability (1424+5delG, 1424+5G→A, and Ala212Serfs*17, shown by cDNA analysis), four affected protein stability (Tyr307Asn, Gly603Arg, Arg235Cys, and Pro699Ser, shown by cycloheximide-chase experiments), and two affected protein localisation (Asn517del and Arg533Leu; shown by immunocytochemistry), pointing to loss of LRP10 function as a common pathogenic mechanism. Interpretation Our findings implicate LRP10 gene defects in the development of inherited forms of α-synucleinopathies. Future elucidation of the function of the LRP10 protein and pathways could offer novel insights into mechanisms, biomarkers, and therapeutic targets. Funding Stichting ParkinsonFonds, Dorpmans-Wigmans Stichting, Erasmus Medical Center, ZonMw—Memorabel programme, EU Joint Programme Neurodegenerative Disease Research (JPND), Parkinson's UK, Avtal om Lakarutbildning och Forskning (ALF) and Parkinsonfonden (Sweden), Lijf and Leven foundation, and cross-border grant of Alzheimer Netherlands–Ligue Europeene Contre la Maladie d'Alzheimer (LECMA).
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- 2018
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41. Genetics of Parkinson's disease and the role of genetic testing
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Vincenzo Bonifati
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Genetics ,Parkinson's disease ,Neurology ,medicine.diagnostic_test ,business.industry ,Medicine ,Neurology (clinical) ,business ,medicine.disease ,Genetic testing - Published
- 2021
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42. TMEM230 : How does it fit in the etiology and pathogenesis of Parkinson's disease?
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Vincenzo Bonifati, Maria Stamelou, Wim Mandemakers, and Marialuisa Quadri
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0301 basic medicine ,Genetics ,Mutation ,Parkinson's disease ,Parkinsonism ,Disease ,Biology ,medicine.disease ,medicine.disease_cause ,LRRK2 ,Penetrance ,03 medical and health sciences ,symbols.namesake ,030104 developmental biology ,0302 clinical medicine ,Neurology ,medicine ,Mendelian inheritance ,symbols ,Neurology (clinical) ,Gene ,030217 neurology & neurosurgery - Abstract
Mutations in the transmembrane protein 230 (TMEM230) gene were recently identified in a large Canadian pedigree and 7 smaller Chinese families, nominating TMEM230 as the third gene causing a Mendelian form of late onset Parkinson's disease (PD) with typical Lewy-body pathology (after synuclein alpha (SNCA) and leucine rich repeat kinase 2 (LRRK2)). The protein encoded by TMEM230 remains largely uncharacterized, but initial evidence points to roles in the trafficking of recycling vesicles, retromers, and endosomes, suggesting intriguing links to the pathways targeted by other PD-causing genes. The focus on family-based studies is gaining new momentum in the next-generation sequencing era, for the discovery of further, high-penetrance (medically relevant) genetic variants in PD. However, at this junction, important aspects of the TMEM230 story remain unclear, such as the prevalence of these mutations in the Chinese and other populations of the world, the penetrance of the mutations, and even their mode of inheritance. The first replication studies among Chinese and White PD patients have been largely negative. Furthermore, much more work remains ahead to elucidate the mechanisms by which these mutations might lead to neuronal cell death, alpha-synuclein pathology, and parkinsonism. © 2017 International Parkinson and Movement Disorder Society.
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- 2017
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43. Neuropathological and genetic characteristics of a post-mortem series of cases with dementia with Lewy bodies clinically suspected of Creutzfeldt-Jakob's disease
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F.J. de Jong, Yvon Galis, Marialuisa Quadri, Afina W. Lemstra, Leonie J.M. Vergouw, A. Ingrassia, Hanneke Geut, Vincenzo Bonifati, W. D. J. van de Berg, A.J.M. Rozemuller, Neurology, Clinical Genetics, Amsterdam Neuroscience - Neurodegeneration, Pathology, and Anatomy and neurosciences
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0301 basic medicine ,Lewy Body Disease ,Male ,Pathology ,medicine.medical_specialty ,Neurology ,SORL1 ,Clinical Neurology ,Neocortex ,Disease ,Neuropathology ,Rapidly progressive dementia ,Creutzfeldt-Jakob Syndrome ,03 medical and health sciences ,0302 clinical medicine ,C9orf72 ,Diagnosis ,Exome Sequencing ,mental disorders ,medicine ,Journal Article ,Humans ,Exome sequencing ,LDL-Receptor Related Proteins ,Aged ,Aged, 80 and over ,business.industry ,Dementia with Lewy bodies ,Membrane Transport Proteins ,medicine.disease ,nervous system diseases ,Alpha-synuclein pathology ,030104 developmental biology ,Disease Progression ,alpha-Synuclein ,Glucosylceramidase ,Female ,GBA ,Neurology (clinical) ,Autopsy ,Geriatrics and Gerontology ,business ,030217 neurology & neurosurgery ,Progressive disease - Abstract
Introduction The disease course of dementia with Lewy bodies (DLB) can be rapidly progressive, clinically resembling Creutzfeldt-Jakob's disease (CJD). To better understand factors contributing to this rapidly progressive disease course, we describe load and distribution of neuropathology, and the presence of possible disease-associated genetic defects in a post-mortem series of DLB cases clinically suspected of CJD. Methods We included pathologically confirmed DLB cases with a disease duration of 3.5 years or less from the Dutch Surveillance Center for Prion Diseases, collected between 1998 and 2014. Lewy body disease (LBD) and Alzheimer's disease (AD)-related pathology were staged and semi-quantitatively scored in selected brain regions. Whole exome sequencing analysis of known disease-associated genes, copy number analysis, APOE e genotyping and C9orf72 repeat expansion analysis were performed to identify defects in genes with a well-established involvement in Parkinson's disease or AD. Results Diffuse LBD was present in nine cases, transitional LBD in six cases and brainstem-predominant LBD in one case. Neocortical alpha-synuclein load was significantly higher in cases with intermediate-to-high than in cases with low-to-none AD-related pathology (p = 0.007). We found two GBA variants (p.D140H and p.E326K) in one patient and two heterozygous rare variants of unknown significance in SORL1 in two patients. Conclusion A high load of neocortical alpha-synuclein pathology was present in most, but not all DLB cases. Additional burden from presence of concomitant pathologies, synergistic effects and specific genetic defects in the known disease-associated genes may have contributed to the rapid disease progression.
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- 2019
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44. Primary familial brain calcification caused by MYORG mutations in an Italian family
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Ilaria Taglia, Maria Teresa Dotti, Andrea Mignarri, Guido J. Breedveld, Antonio Federico, Demy J.S. Kuipers, Vincenzo Bonifati, and Clinical Genetics
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Male ,Glycoside Hydrolases ,Bioinformatics ,Text mining ,Basal Ganglia Diseases ,Parkinsonian Disorders ,Cerebellar Diseases ,Medicine ,Humans ,Gait Disorders, Neurologic ,Aged ,Primary (chemistry) ,business.industry ,Dysarthria ,Siblings ,Calcinosis ,medicine.disease ,Pedigree ,Neurology ,Italy ,Mutation ,Heredodegenerative Disorders, Nervous System ,Female ,Neurology (clinical) ,Geriatrics and Gerontology ,business ,Calcification ,Brain Stem - Published
- 2019
45. Late-onset phenotype associated with a homozygous GJC2 missense mutation in a Turkish family
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Grazia M.S. Mancini, Guido J. Breedveld, Murat Emre, Simone Olgiati, Wilfred F. J. van IJcken, Başar Bilgiç, Hasmet Hanagasi, Zeynep Tufekcioglu, Demy J.S. Kuipers, Marjolein H G Dremmen, Vincenzo Bonifati, Clinical Genetics, Radiology & Nuclear Medicine, and Cell biology
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0301 basic medicine ,Male ,Candidate gene ,Ataxia ,Turkey ,Mutation, Missense ,Biology ,Connexins ,03 medical and health sciences ,symbols.namesake ,GJC2 ,0302 clinical medicine ,Parkinsonian Disorders ,medicine ,Missense mutation ,Humans ,Age of Onset ,Exome sequencing ,Aged ,Sanger sequencing ,Genetics ,Parkinsonism ,Siblings ,Middle Aged ,Disease gene identification ,medicine.disease ,Magnetic Resonance Imaging ,White Matter ,Pedigree ,030104 developmental biology ,Phenotype ,Neurology ,symbols ,Female ,Neurology (clinical) ,Geriatrics and Gerontology ,medicine.symptom ,030217 neurology & neurosurgery - Abstract
Objective Recessive mutations in the Gap Junction Protein Gamma 2 (GJC2) gene cause Pelizaeus-Merzbacher-like disease type 1, a severe infantile-onset hypomyelinating leukodystrophy. Milder, late-onset phenotypes including complicated spastic paraplegia in one family (SPG44), and mild tremor in one case, were reported associated to GJC2 homozygous missense mutations. Here, we report a new family with two siblings carrying a different homozygous GJC2 mutation, presenting with late-onset ataxic and pyramidal disturbances, and parkinsonism in one of them. Methods Two affected siblings were studied by neurological examination and brain MRI. Genetic analyses included genome-wide homozygosity mapping in both siblings, and whole exome sequencing in one sib. The resulting candidate gene variant was validated by Sanger sequencing. Results The affected siblings share a novel homozygous GJC2 missense mutation (c.820G>C, p.Val274Leu), predicted as pathogenic by all used in-silico tools. Brain MRI showed hyperintense signal in T2-weighted images in the internal capsule and subcortical and periventricular white matter, consistent with hypomyelination. Conclusions Our findings confirm and further expand the late-onset phenotypes of GJC2 mutations, to include prominent ataxia, pyramidal disturbances and mild parkinsonism, and confirm the distinctive associated MRI pattern.
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- 2019
46. PERK-Mediated Unfolded Protein Response Activation and Oxidative Stress in PARK20 Fibroblasts
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Lucrezia Zerillo, Paolo Remondelli, Ornella Moltedo, Vincenzo Bonifati, Maurizio Renna, Anna De Rosa, Giuseppe De Michele, Elena Polishchuk, Giuseppina Amodio, Maria Teresa Pellecchia, Paolo Barone, Dominga Fasano, Roman S. Polishchuk, Marco Oliveti, Raffaella Faraonio, Lucio Nitsch, Giovanna Maria Pierantoni, Simona Paladino, Paola Di Pietro, Chiara Criscuolo, Clinical Genetics, Amodio, G., Moltedo, O., Fasano, D., Zerillo, Lucrezia, Oliveti, M., Di Pietro, P., Faraonio, R., Barone, P., Pellecchia, M. T., De Rosa, A., De Michele, G., Polishchuk, E., Polishchuk, R., Bonifati, V., Nitsch, L., Pierantoni, G. M., Renna, M., Criscuolo, C., Paladino, S., and Remondelli, P.
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0301 basic medicine ,Synaptojanin 1 ,Endosome ,medicine.disease_cause ,"PARK20". "PERK (PKR-like endoplasmic reticulum kinase)" ,lcsh:RC321-571 ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,mitochondrial dysfunction ,medicine ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,"Synaptojanin 1" ,Secretory pathway ,Original Research ,Chemistry ,PARK20 ,General Neuroscience ,Endoplasmic reticulum ,membrane trafficking ,ATF4 ,PERK (PKR-like endoplasmic reticulum kinase) ,oxydative stress ,Cell biology ,"ER-stress" ,Oxydative stre ,030104 developmental biology ,PERK-mediated unfolded protein response ,"oxydative-stress" ,Unfolded protein response ,Parkinson’s disease ,ER stre ,"PARK20". "PERK (PKR-like endoplasmic reticulum kinase)"., "oxydative-stress"., "ER-stress"., "Synaptojanin 1"., membrane trafficking, mitochondrial dysfunction, Parkinson’s disease ,ER stress ,030217 neurology & neurosurgery ,Oxidative stress ,Neuroscience - Abstract
PARK20, an early onset autosomal recessive parkinsonism is due to mutations in the phosphatidylinositol-phosphatase Synaptojanin 1 (Synj1). We have recently shown that the early endosomal compartments are profoundly altered in PARK20 fibroblasts as well as the endosomal trafficking. Here, we report that PARK20 fibroblasts also display a drastic alteration of the architecture and function of the early secretory compartments. Our results show that the exit machinery from the Endoplasmic Reticulum (ER) and the ER-to-Golgi trafficking are markedly compromised in patient cells. As a consequence, PARK20 fibroblasts accumulate large amounts of cargo proteins within the ER, leading to the induction of ER stress. Interestingly, this stressful state is coupled to the activation of the PERK/eIF2a/ATF4/CHOP pathway of the Unfolded Protein Response (UPR). In addition, PARK20 fibroblasts reveal upregulation of oxidative stress markers and total ROS production with concomitant alteration of the morphology of the mitochondrial network. Interestingly, treatment of PARK20 cells with GSK2606414 (GSK), a specific inhibitor of PERK activity, restores the level of ROS, signaling a direct correlation between ER stress and the induction of oxidative stress in the PARK20 cells. All together, these findings suggest that dysfunction of early secretory pathway might contribute to the pathogenesis of the disease.
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- 2019
47. A Balanced Translocation Disrupting BCL2L10 and PNLDC1 Segregates With Affective Psychosis
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Simone Olgiati, Anneke J.A. Kievit, Michiel Coesmans, Vincenzo Bonifati, Steven A. Kushner, Christian G. Bouwkamp, Guido J. Breedveld, Clinical Genetics, and Psychiatry
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0301 basic medicine ,Adult ,Affective Disorders, Psychotic ,Male ,medicine.medical_specialty ,Bipolar I disorder ,Bipolar Disorder ,PNLDC1 ,Population ,Chromosomal translocation ,Schizoaffective disorder ,cytogenetics ,Translocation, Genetic ,affective psychosis ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Molecular genetics ,medicine ,Humans ,Bipolar disorder ,education ,Genetics (clinical) ,Research Articles ,In Situ Hybridization, Fluorescence ,Genetics ,education.field_of_study ,Chromosomes, Human, Pair 15 ,business.industry ,balanced translocation ,Cytogenetics ,Sequence Analysis, DNA ,medicine.disease ,schizoaffective disorder ,Pedigree ,Psychiatry and Mental health ,030104 developmental biology ,BCL2L10 ,Proto-Oncogene Proteins c-bcl-2 ,Psychotic Disorders ,Karyotyping ,Exoribonucleases ,Schizophrenia ,Medical genetics ,Chromosomes, Human, Pair 6 ,Female ,business ,whole‐genome sequencing ,Research Article - Abstract
Affective psychoses are a group of severe psychiatric disorders, including schizoaffective disorder and bipolar I disorder, together affecting ∼1% of the population. Despite their high heritability, the molecular genetics and neurobiology of affective psychosis remain largely elusive. Here, we describe the identification of a structural genetic variant segregating with affective psychosis in a family with multiple members suffering from bipolar I disorder or schizoaffective disorder, bipolar type. A balanced translocation involving chromosomes 6 and 15 was detected by karyotyping and fluorescence in-situ hybridization (FISH). Using whole-genome sequencing, we rapidly delineated the translocation breakpoints as corresponding intragenic events disrupting BCL2L10 and PNLDC1. These data warrant further consideration for BCL2L10 and PNLDC1 as novel candidates for affective psychosis. © 2016 The Authors. American Journal of Medical Genetics Part B: Neuropsychiatric Genetics Published by Wiley Periodicals, Inc.
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- 2017
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48. The SAC1 domain in synaptojanin is required for autophagosome maturation at presynaptic terminals
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Wim Mandemakers, Sabine Kuenen, Vincenzo Bonifati, Sandra-Fausia Soukup, Sven Vilain, Femke M.S. de Vrij, Marina Picillo, Julia Manetsberger, Serguei Gontcharenko, Frederic A. Meunier, Patrik Verstreken, Adekunle T. Bademosi, Nils Schoovaerts, Jef Swerts, Natalia V. Gounko, Roy Masius, Shashini T. Munshi, Steven A. Kushner, Paolo Barone, Roeland Vanhauwaert, Laura Bounti, Clinical Genetics, and Psychiatry
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Genetics and Molecular Biology (all) ,0301 basic medicine ,Immunology and Microbiology (all) ,Parkinson's disease ,Autophagosome maturation ,Autophagy-Related Proteins ,Biochemistry ,Synapse ,0302 clinical medicine ,Phosphatidylinositol Phosphates ,synapse ,correlative light and electron microscopy ,Cells, Cultured ,Cultured ,single-molecule tracking ,General Neuroscience ,Neurodegeneration ,Parkinson Disease ,Articles ,Cell biology ,Drosophila ,Neurite ,induced pluripotent stem cells ,Cells ,Mutation, Missense ,Presynaptic Terminals ,Nerve Tissue Proteins ,Amino Acid Substitution ,Animals ,Autophagosomes ,Humans ,Membrane Proteins ,Phosphoric Monoester Hydrolases ,Autophagy ,Neuroscience (all) ,Molecular Biology ,Biochemistry, Genetics and Molecular Biology (all) ,Synaptojanin ,Biology ,Endocytosis ,Synaptic vesicle ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,medicine ,General Immunology and Microbiology ,medicine.disease ,030104 developmental biology ,Mutation ,Missense ,030217 neurology & neurosurgery - Abstract
Presynaptic terminals are metabolically active and accrue damage through continuous vesicle cycling. How synapses locally regulate protein homeostasis is poorly understood. We show that the presynaptic lipid phosphatase synaptojanin is required for macroautophagy, and this role is inhibited by the Parkinson's disease mutation R258Q. Synaptojanin drives synaptic endocytosis by dephosphorylating PI(4,5)P2, but this function appears normal in Synaptojanin RQ knock‐in flies. Instead, R258Q affects the synaptojanin SAC1 domain that dephosphorylates PI(3)P and PI(3,5)P2, two lipids found in autophagosomal membranes. Using advanced imaging, we show that Synaptojanin RQ mutants accumulate the PI(3)P/PI(3,5)P2‐binding protein Atg18a on nascent synaptic autophagosomes, blocking autophagosome maturation at fly synapses and in neurites of human patient induced pluripotent stem cell‐derived neurons. Additionally, we observe neurodegeneration, including dopaminergic neuron loss, in Synaptojanin RQ flies. Thus, synaptojanin is essential for macroautophagy within presynaptic terminals, coupling protein turnover with synaptic vesicle cycling and linking presynaptic‐specific autophagy defects to Parkinson's disease.
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- 2017
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49. An update on the genetics of dementia with Lewy bodies
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Charlotte E. Teunissen, John C. van Swieten, Vincenzo Bonifati, Afina W. Lemstra, Leonie J.M. Vergouw, Wilma D.J. van de Berg, Frank Jan de Jong, Inger van Steenoven, Neurology, and Clinical Genetics
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0301 basic medicine ,Lewy Body Disease ,Candidate gene ,Disease ,Biology ,behavioral disciplines and activities ,03 medical and health sciences ,0302 clinical medicine ,mental disorders ,medicine ,Humans ,Genetic Predisposition to Disease ,Allele ,Genetic risk ,Pathological ,Exome sequencing ,Genetic Association Studies ,Genetics ,Dementia with Lewy bodies ,medicine.disease ,Genetic architecture ,nervous system diseases ,030104 developmental biology ,nervous system ,Neurology ,Neurology (clinical) ,Geriatrics and Gerontology ,030217 neurology & neurosurgery - Abstract
The genetic architecture of dementia with Lewy bodies (DLB) is increasingly taking shape. Initially, genetic research focused mainly on linkage and candidate gene studies in small series of DLB patients. More recently, association and exome sequencing studies in larger groups have been conducted, and have shown that several variants in GBA and the APOE ε4 allele are important genetic risk factors for DLB. However, genetic research in DLB is still in its infancy. So far, many genetic studies have been biased and performed in clinically and pathologically heterogeneous populations. Therefore, it is likely that multiple DLB-specific genetic determinants still have to be identified. To further our understanding of the role of genetics in DLB, future genetic studies should be unbiased and performed in large series of DLB patients, ideally with both a clinical diagnosis and pathological confirmation. The combination of genomic techniques with other research modalities, such as proteomic research, is a promising approach to identify novel genetic determinants. More knowledge about the genetics of DLB will increase our understanding of the pathophysiology of the disease and its relation with Parkinson's Disease and Alzheimer's Disease, and may eventually lead to the development of disease modifying treatments.
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- 2017
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50. The p.Thr11Met mutation in c19orf12 is frequent among adult Turkish patients with MPAN
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Josja Graafland, Gulin Sunter, Yunus Diler, Murat Gultekin, Zeynep Tufekcioglu, Esen Saka, Ayse Destina Yalcin, Tuğrul Doğan, Demy J.S. Kuipers, Vincenzo Bonifati, Murat Emre, Bulent Elibol, Marialuisa Quadri, Simone Olgiati, Başar Bilgiç, Reyhan Surmeli, Hakan Kaleagasi, Guido J. Breedveld, Okan Dogu, Hasmet Hanagasi, and Clinical Genetics
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0301 basic medicine ,Proband ,Pathology ,medicine.medical_specialty ,Neurodegeneration with brain iron accumulation ,Parkinsonism ,Neurodegeneration ,Haplotype ,Locus (genetics) ,Biology ,medicine.disease ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Globus pallidus ,Neurology ,medicine ,Neurology (clinical) ,Geriatrics and Gerontology ,Cognitive decline ,030217 neurology & neurosurgery - Abstract
Introduction Mutations in the C19orf12 gene cause mitochondrial membrane protein associated neurodegeneration (MPAN), an autosomal recessive form of neurodegeneration with brain iron accumulation (NBIA). A limited number of patients with C19orf12 mutations, particularly those with adult onset of symptoms, have been reported. Methods We sequenced the entire coding region of C19orf12 in 15 Turkish adult probands with idiopathic NBIA. We also performed haplotype analysis in families with a recurrent C19orf12 mutation. Clinical features were collected using a standardized form. Results Nine of our 15 probands (60%) carried the homozygous c.32C > T mutation in C19orf12 (predicted protein effect: p.Thr11Met). This homozygous mutation co-segregated with the disease in all affected relatives available for testing (16 homozygous subjects). Haplotypes across the C19orf12 locus were identical for a very small region, closest to the mutation, suggesting an old founder, or, two independent founders. The clinical phenotype was characterized by adult onset in most cases (mean 24.5 years, range 10–36), and broad spectrum, including prominent parkinsonism, pyramidal signs, psychiatric disturbances, cognitive decline, and motor axonal neuropathy, in various combinations. On T2- or susceptibility weighted-MRI images, all patients displayed bilateral hypointensities in globus pallidus and substantia nigra, without an eye-of-the-tiger sign; however, hyperintense streaking of the medial medullary lamina between the external and internal parts of globus pallidus was observed frequently. Conclusion The C19orf12 p.Thr11Met mutation is frequent among adult Turkish patients with MPAN. These findings contribute to the characterization of this important NBIA form, and have direct implications for genetic testing of patients of Turkish origin.
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- 2017
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