1. High mitochondrial mutation rates estimated from deep-rooting costa rican pedigrees
- Author
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Guido Barbujani, Henrieta Raventos, Ramon Villegas-Palma, Ramiro Barrantes, Loredana Castrì Posthumously, Mauricio Melendez-Obando, Davide Pettener, Reynaldo Pereira, Lorena Madrigal, Donata Luiselli, Madrigal L., Posthumously L.C., Melendez-Obando M., Villegas-Palma R., Barrantes R., Raventos H., Pereira R., Luiselli D., Pettener D., and Barbujani G.
- Subjects
Adult ,Costa Rica ,Mitochondrial DNA ,Mutation rate ,PEDIGREE ,MUTATION RATE ,Population ,Mothers ,Population genetics ,Genealogía ,Pedigree chart ,mitochondrial DNA ,ADN mitocondrial ,Biology ,DNA, Mitochondrial ,Article ,Molecular evolution ,MTDNA ,Humans ,education ,Genetics ,education.field_of_study ,Mutación ,Phylogenetic tree ,divergence rate ,mutation rate ,population genetics ,Genetic Variation ,Genética ,Hypervariable region ,Genetics, Population ,Anthropology ,Female ,Anatomy - Abstract
artículo (arbitrado). Universidad de Costa Rica, Centro de Investigación en Biología Celular y Molecular, 2012 Estimates of mutation rates for the noncoding hypervariable Region I (HVR-I) of mitochondrial DNA (mtDNA) vary widely, depending on whether they are inferred from phylogenies (assuming that molecular evolution is clock-like) or directly from pedigrees. All pedigree-based studies so far were conducted on populations of European origin. In this paper we analyzed 19 deep-rooting pedigrees in a population of mixed origin in Costa Rica. We calculated two estimates of the HVRI mutation rate, one considering all apparent mutations, and one disregarding changes at sites known to be mutational hot spots and eliminating genealogy branches which might be suspected to include errors, or unrecognized adoptions along the female lines. At the end of this procedure, we still observed a mutation rate equal to 1.24 × 10−6, per site per year, i.e., at least three-fold as high as estimates derived from phylogenies. Our results confirm that mutation rates observed in pedigrees are much higher than estimated assuming a neutral model of long-term HVRI evolution. We argue that, until the cause of these discrepancies will be fully understood, both lower estimates (i.e., those derived from phylogenetic comparisons) and higher, direct estimates such as those obtained in this study, should be considered when modeling evolutionary and demographic processes. Universidad de Costa Rica UCR::Vicerrectoría de Investigación::Unidades de Investigación::Ciencias Básicas::Centro de Investigación en Biología Celular y Molecular (CIBCM)
- Published
- 2012