8,783 results on '"Victor, B."'
Search Results
2. Doubly Robust Targeted Estimation of Conditional Average Treatment Effects for Time-to-event Outcomes with Competing Risks
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Li, Runjia, Talisa, Victor B., and Chang, Chung-Chou H.
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Statistics - Methodology ,Statistics - Applications - Abstract
In recent years, precision treatment strategy have gained significant attention in medical research, particularly for patient care. We propose a novel framework for estimating conditional average treatment effects (CATE) in time-to-event data with competing risks, using ICU patients with sepsis as an illustrative example. Our approach, based on cumulative incidence functions and targeted maximum likelihood estimation (TMLE), achieves both asymptotic efficiency and double robustness. The primary contribution of this work lies in our derivation of the efficient influence function for the targeted causal parameter, CATE. We established the theoretical proofs for these properties, and subsequently confirmed them through simulations. Our TMLE framework is flexible, accommodating various regression and machine learning models, making it applicable in diverse scenarios. In order to identify variables contributing to treatment effect heterogeneity and to facilitate accurate estimation of CATE, we developed two distinct variable importance measures (VIMs). This work provides a powerful tool for optimizing personalized treatment strategies, furthering the pursuit of precision medicine., Comment: 42 pages, 8 figures
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- 2024
3. Regression models for binary data with scale mixtures of centered skew-normal link functions
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de Freitas, João Victor B. and Azevedo, Caio L. N.
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Statistics - Methodology - Abstract
For the binary regression, the use of symmetrical link functions are not appropriate when we have evidence that the probability of success increases at a different rate than decreases. In these cases, the use of link functions based on the cumulative distribution function of a skewed and heavy tailed distribution can be useful. The most popular choice is some scale mixtures of skew-normal distribution. This family of distributions can have some identifiability problems, caused by the so-called direct parameterization. Also, in the binary modeling with skewed link functions, we can have another identifiability problem caused by the presence of the intercept and the skewness parameter. To circumvent these issues, in this work we proposed link functions based on the scale mixtures of skew-normal distributions under the centered parameterization. Furthermore, we proposed to fix the sign of the skewness parameter, which is a new perspective in the literature to deal with the identifiability problem in skewed link functions. Bayesian inference using MCMC algorithms and residual analysis are developed. Simulation studies are performed to evaluate the performance of the model. Also, the methodology is applied in a heart disease data.
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- 2024
4. Bayesian inference for scale mixtures of skew-normal linear models under the centered parameterization
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de Freitas, João Victor B. and Azevedo, Caio L. N.
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Statistics - Methodology - Abstract
In many situations we are interested in modeling real data where the response distribution, even conditionally on the covariates, presents asymmetry and/or heavy/light tails. In these situations, it is more suitable to consider models based on the skewed and/or heavy/light tailed distributions, such as the class of scale mixtures of skew-normal distributions. The classical parameterization of this distributions may not be good due to the some inferential issues when the skewness parameter is in a neighborhood of 0, then, the centered parameterization becomes more appropriate. In this paper, we developed a class of scale mixtures of skew-normal distributions under the centered parameterization, also a linear regression model based on them was proposed. We explore a hierarchical representation and set up a MCMC scheme for parameter estimation. Furthermore, we developed residuals and influence analysis tools. A Monte Carlo experiment is conducted to evaluate the performance of the MCMC algorithm and the behavior of the residual distribution. The methodology is illustrated with the analysis of a real data set.
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- 2024
5. New limits on neutrino decay from high-energy astrophysical neutrinos
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Valera, Victor B., Fiorillo, Damiano F. G., Esteban, Ivan, and Bustamante, Mauricio
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Astrophysics - High Energy Astrophysical Phenomena ,High Energy Physics - Experiment ,High Energy Physics - Phenomenology - Abstract
Since neutrinos have mass differences, they could decay into one another. But their lifetimes are likely long, even when shortened by new physics, so decay likely impacts neutrinos only during long trips. This makes high-energy astrophysical neutrinos, traveling for up to billions of light-years, sensitive probes of decay. However, their sensitivity must be tempered by reality. We derive from them thorough bounds on the neutrino lifetimes accounting for critical astrophysical unknowns and the nuances of neutrino detection. Using the diffuse neutrino flux, we disfavor lifetimes $\tau \lesssim 20$-450 s $(m/{\rm eV})$, based on present IceCube data, and forecast factor-of-10 improvements by upcoming detectors. Using, for the first time, neutrinos from the active galaxy NGC 1068, extant unknowns preclude placing lifetime bounds today, but upcoming detectors could disfavor $\tau \sim 100$-5000 s $(m/{\rm eV})$., Comment: 20 pages, 6 figures, 2 tables, plus appendices
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- 2024
6. A high-density and high-confinement tokamak plasma regime for fusion energy.
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Ding, S, Garofalo, A, Wang, H, Weisberg, D, Li, Z, Jian, X, Eldon, D, Victor, B, Marinoni, A, Hu, Q, Carvalho, I, Odstrčil, T, Wang, L, Hyatt, A, Osborne, T, Gong, X, Qian, J, Huang, J, McClenaghan, J, Holcomb, C, and Hanson, J
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Plasma Gases ,Nuclear Fusion ,Hot Temperature ,Magnetic Fields - Abstract
The tokamak approach, utilizing a toroidal magnetic field configuration to confine a hot plasma, is one of the most promising designs for developing reactors that can exploit nuclear fusion to generate electrical energy1,2. To reach the goal of an economical reactor, most tokamak reactor designs3-10 simultaneously require reaching a plasma line-averaged density above an empirical limit-the so-called Greenwald density11-and attaining an energy confinement quality better than the standard high-confinement mode12,13. However, such an operating regime has never been verified in experiments. In addition, a long-standing challenge in the high-confinement mode has been the compatibility between a high-performance core and avoiding large, transient edge perturbations that can cause very high heat loads on the plasma-facing-components in tokamaks. Here we report the demonstration of stable tokamak plasmas with a line-averaged density approximately 20% above the Greenwald density and an energy confinement quality of approximately 50% better than the standard high-confinement mode, which was realized by taking advantage of the enhanced suppression of turbulent transport granted by high density-gradients in the high-poloidal-beta scenario14,15. Furthermore, our experimental results show an integration of very low edge transient perturbations with the high normalized density and confinement core. The operating regime we report supports some critical requirements in many fusion reactor designs all over the world and opens a potential avenue to an operating point for producing economically attractive fusion energy.
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- 2024
7. Chronic intermittent hypoxia attenuates noradrenergic innervation of hypoglossal motor nucleus
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Herlihy, Rachael, Frasson Dos Reis, Leonardo, Gvritishvili, Anzor, Kvizhinadze, Maya, Dybas, Elizabeth, Malhotra, Atul, Fenik, Victor B, and Rukhadze, Irma
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Biomedical and Clinical Sciences ,Medical Physiology ,Cardiovascular Medicine and Haematology ,Clinical Sciences ,Lung ,Sleep Research ,Neurosciences ,Humans ,Male ,Female ,Mice ,Animals ,Norepinephrine ,Hypoxia ,Motor Neurons ,Hypoglossal Nerve ,Sleep Apnea ,Obstructive ,Body Weight ,Chronic intermittent hypoxia ,Hypoglossal motoneurons ,Obstructive sleep apnea ,Noradrenergic neurons ,Conditional anterograde tracers ,Cardiorespiratory Medicine and Haematology ,Physiology ,Cardiovascular medicine and haematology ,Medical physiology - Abstract
The state-dependent noradrenergic activation of hypoglossal motoneurons plays an important role in the maintenance of upper airway patency and pathophysiology of obstructive sleep apnea (OSA). Chronic intermittent hypoxia (CIH), a major pathogenic factor of OSA, contributes to the risk for developing neurodegenerative disorders in OSA patients. Using anterograde tracer, channelrhodopsin-2, we mapped axonal projections from noradrenergic A7 and SubCoeruleus neurons to hypoglossal nucleus in DBH-cre mice and assessed the effect of CIH on these projections. We found that CIH significantly reduced the number of axonal projections from SubCoeruleus neurons to both dorsal (by 68%) and to ventral (by73%) subregions of the hypoglossal motor nucleus compared to sham-treated animals. The animals' body weight was also negatively affected by CIH. Both effects, the decrease in axonal projections and body weight, were more pronounced in male than female mice, which was likely caused by less sensitivity of female mice to CIH as compared to males. The A7 neurons appeared to have limited projections to the hypoglossal nucleus. Our findings suggest that CIH-induced reduction of noradrenergic innervation of hypoglossal motoneurons may exacerbate progression of OSA, especially in men.
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- 2024
8. Exploring How Community College Presidents Make Human Resources Decisions for Financial Aid Departments in an Era of Uncertainty
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Jorge Burmicky, Victor B. Sáenz, and Wonsun Ryu
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Community college presidents play a critical role in making decisions that shape the organizational cultures and policies of their institutions. This study explored the perceptions of 15 public community college presidents in Texas. Using focus groups and grounded theory methods, this research applied analytical frameworks focused on human resources in education to examine how community college presidents make decisions about financial aid departments. In doing so, this study also shares mechanisms that community college presidents use to encourage professional development for financial aid staff. Findings show that the decision-making process of community college presidents is highly influenced by the "culture of compliance" that many financial aid departments experience as a result of state and federal regulations. The findings also highlight the need for presidents to engage in relationship building within and outside of the institution to encourage professional development opportunities for staff. Implications for higher education practice are offered.
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- 2024
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9. The mechanisms of zinc-induced root growth inhibition in the zinc hyperaccumulator Noccaea caerulescens and the non-accumulator Microthlaspi perfoliatum
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Zhukovskaya, Natalia V., Kozhevnikova, Anna D., Lunkova, Nina F., Lykova, Tatiana Yu., Kartashov, Alexander V., Ivanov, Victor B., Schat, Henk, and Seregin, Ilya V.
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- 2024
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10. Astrocyte control bursting mode of spiking neuron network with memristor-implemented plasticity
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Stasenko, Sergey V., Mikhaylov, Alexey N., Fedotov, Alexander A., Smirnov, Vladimir A., and Kazantsev, Victor B.
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Quantitative Biology - Neurons and Cognition - Abstract
A mathematical model of a spiking neuron network accompanied by astrocytes is considered. The network is composed of excitatory and inhibitory neurons with synaptic connections supplied by a memristor-based model of plasticity. Another mechanism for changing the synaptic connections involves astrocytic regulations using the concept of tripartite synapses. In the absence of memristor-based plasticity, the connections between these neurons drive the network dynamics into a burst mode, as observed in many experimental neurobiological studies when investigating living networks in neuronal cultures. The memristive plasticity implementing synaptic plasticity in inhibitory synapses results in a shift in network dynamics towards an asynchronous mode. Next,it is found that accounting for astrocytic regulation in glutamatergic excitatory synapses enable the restoration of 'normal' burst dynamics. The conditions and parameters of such astrocytic regulation's impact on burst dynamics established.
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- 2023
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11. Multiscale cortical morphometry reveals pronounced regional and scale-dependent variations across the lifespan
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Leiberg, Karoline, Blattner, Timo, Little, Bethany, Mello, Victor B. B., de Moraes, Fernanda H. P., Rummel, Christian, Taylor, Peter N., Mota, Bruno, and Wang, Yujiang
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Quantitative Biology - Neurons and Cognition - Abstract
Motivation: Characterising the changes in cortical morphology across the lifespan is fundamental for a range of research and clinical applications. Most studies to date have found a monotonic decrease in commonly used morphometrics, such as cortical thickness and volume, across the entire brain with increasing age. Any regional variations reported are subtle changes in the rate of decrease. However, these descriptions of morphological changes have been limited to a single length scale. Here, we delineate the morphological changes associated with the healthy lifespan in multiscale morphometrics. Methods: We applied multiscale morphometric analysis to structural MRI from subjects aged 6-88 years from NKI (n=833) and CamCAN (n=641). These multiscale morphometrics were obtained at both the cortical hemisphere and lobe level. Results: On the level of whole cortical hemispheres, lifespan trajectories show diverging and even opposing trends at different spatial scales, in contrast to the monotonic decreases of volume and thickness described so far. Importantly, larger scales displayed most dramatic changes across the lifespan (up to 60%). More pronounced lobal differences in lifespan trajectories also became apparent in scales over 0.7mm. In a proof-of-principle application in brain age prediction, we also demonstrate added information contributed by multiscale morphometrics. Conclusion: Our study provides a comprehensive multiscale description of lifespan effects on cortical morphology in an age range from 6-88~years. In future, this can form the foundations for a normative model to compare individuals or cohorts, hence identifying multiscale morphological abnormalities. Our results reveal the complementary information contained in different spatial scales, suggesting that morphometrics should not be considered on a single scale, but as functions of length scale.
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- 2023
12. Genetic parameters for udder conformation traits derived from Cartesian coordinates generated by robotic milking systems in North American Holstein cattle
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Gabriel C. Medeiros, Jose Bento S. Ferraz, Victor B. Pedrosa, Shi-Yi Chen, Jarrod S. Doucette, Jacquelyn P. Boerman, and Luiz F. Brito
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genetic correlation ,heritability ,milking robots ,repeatability ,udder conformation ,Dairy processing. Dairy products ,SF250.5-275 ,Dairying ,SF221-250 - Abstract
ABSTRACT: Udder conformation is directly related to milk yield, cow health, workability, and welfare. Automatic milking systems (AMS, also known as milking robots) have become popular worldwide, and the number of dairy farms adopting these systems has increased considerably over the past years. In each milking visit, AMS record the location of the 4 teats as Cartesian coordinates in an xyz plan, which can then be used to derive udder conformation traits. Because AMS generate a large amount of data for individual cows per milking visit, they can contribute to an accurate assessment of important traits such as udder conformation without the addition of human classifier errors (in subjective scoring systems). Therefore, the primary objectives of this study were to estimate genomic-based genetic parameters for udder conformation traits derived from AMS records in North American Holstein cattle and to assess the genetic correlation between the derived traits for evaluating the feasibility of multitrait genomic selection for breeding cows that are more suitable for milking in AMS. The Cartesian teat coordinates measured during each milking visit were collected by 36 milking robots in 4,480 Holstein cows from 2017 to 2021, resulting in 5,317,488 records. A total of 4,118 of these Holstein cows were also genotyped for 57,600 SNPs. Five udder conformation traits were derived: udder balance (UB, mm), udder depth (UD, mm), front teat distance (FTD, mm), rear teat distance (RTD, mm), and distance front–rear (DFR, mm). In addition, 2 traits directly related to cow productivity in the system were added to the study: daily milk yield (DY) and milk electroconductivity (EC; as an indicator of mastitis). Variance components and genetic parameters for UB, UD, FTD, RTD, DFR, DY, and EC were estimated based on repeatability animal models. The estimates of heritability (± SE) for UB, UD, FTD, RTD, DFR, DY, and EC were 0.41 ± 0.02, 0.79 ± 0.01, 0.53 ± 0.02, 0.40 ± 0.02, 0.65 ± 0.02, 0.20 ± 0.02, and 0.46 ± 0.02, respectively. The repeatability estimates (± SE) for UB, UD, FTD, RTD, and DFR were 0.82 ± 0.01, 0.93 ± 0.01, 0.87 ± 0.01, 0.83 ± 0.01, and 0.88 ± 0.01, respectively. The strongest genetic correlations were observed between FTD and RTD (0.54 ± 0.03), UD and DFR (−0.47 ± 0.03), DFR and FTD (0.32 ± 0.03), and UD and FTD (−0.31 ± 0.03). These results suggest that udder conformation traits derived from Cartesian coordinates from AMS are moderately to highly heritable. Furthermore, the moderate genetic correlations between these traits should be considered when developing selection subindexes. The most relevant genetic correlations between traits related to cow milk productivity and udder conformation traits were between UD and EC (−0.25 ± 0.03) and between DFR and DY (0.30 ± 0.04), in which both genetic correlations are favorable. These findings will contribute to the design of genomic selection schemes for improving udder conformation in North American Holstein cattle, especially in precision dairy farms.
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- 2024
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13. Men of Color Programs Serving Latino Men at Hispanic-Serving Community Colleges: An Organizational Identity Exploration
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Jorge Burmicky, Christopher Estrella-Ramirez, Susana H. Hernández, Wonsun Ryu, Rodrigo Aguayo, and Victor B. Sáenz
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This multi-sited case study explored Men of Color (MoC) programs at Hispanic-serving community colleges. By employing frameworks designed to make meaning of Hispanic-serving institution (HSI) organizational identity, we examined how MoC program practitioners define the organizational identity of their Hispanic-serving community college, and how these understandings shape the services provided to Latino men. Findings underscored factors and identity markers that practitioners used to define HSI identity and "servingness" toward Latino men. In addition, our findings highlighted the problems and inconsistencies that exist when it comes to prioritizing the educational needs of community college Latino men. We provided implications for practice tailored for community college practitioners.
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- 2024
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14. Joint measurement of the ultra-high-energy neutrino spectrum and cross section
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Valera, Victor B., Bustamante, Mauricio, and Mena, Olga
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Astrophysics - High Energy Astrophysical Phenomena ,High Energy Physics - Experiment ,High Energy Physics - Phenomenology - Abstract
Soon, a new generation of neutrino telescopes, presently under planning, will target the discovery of ultra-high-energy (UHE) neutrinos of cosmic origin, with energies higher than 100 PeV, that promise unique insight into astrophysics and particle physics. Yet, predictions of the UHE neutrino flux and interaction cross section -- whose measurement is co-dependent -- are laden with significant uncertainty that, if unaddressed, could misrepresent the capabilities to measure one or the other. To address this, we advocate for the joint measurement of the UHE neutrino spectrum and neutrino-nucleon cross section, including of their energy dependence, without assuming prior knowledge of either. We illustrate our methods by adopting empirical parametrizations of the neutrino spectrum, in forecasts geared to the planned radio array of the IceCube-Gen2 neutrino telescope. We warn against using simple parametrizations -- a simple power law or one augmented with an exponential cut-off -- that might fail to capture features of the spectrum that are commonplace in the predictions. We argue instead for the use of flexible parametrizations -- a piecewise power law or an interpolating polynomial -- that ensure accuracy. We report loose design targets for the detector energy and angular resolution that are compatible with those under present consideration., Comment: 20 pages, 5 figures, 1 table
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- 2023
15. Discovery Forecasts of the Diffuse Ultra-High-Energy Neutrino Flux with IceCube-Gen2
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Valera, Victor B., Bustamante, Mauricio, and Glaser, Christian
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
The discovery of ultra-high-energy (UHE) neutrinos has the potential to offer unique insight into fundamental questions. To capitalize on the upcoming opportunity provided by new UHE neutrino telescopes, we provide state-of-the-art forecasts of the discovery of a diffuse flux of UHE neutrinos over the next 10-20 years, focusing on neutrino radio-detection in the planned IceCube-Gen2 detector. We use state-of-the-art flux predictions and detector modeling. We find that, even under conservative analysis choices, most benchmark UHE neutrino flux models from the literature may be discovered within 10 years of detector exposure, with many discoverable sooner, and may be distinguished from each other. Our results demonstrate the transformative potential of next-generation UHE neutrino telescopes., Comment: 8 pages, 3 figures. Submitted as a proceeding for ICRC 2023. arXiv admin note: text overlap with arXiv:2210.03756
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- 2023
16. Comprehensive Measurement Forecasts of the EeV Neutrino-Nucleon Cross Section with Cosmic Neutrinos at IceCube-Gen2
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Valera, Victor B., Bustamante, Mauricio, and Glaser, Christian
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High Energy Physics - Phenomenology - Abstract
The investigation of neutrino interactions with matter serves as a valuable tool for understanding the fundamental structure of nucleons and potentially uncovering novel physics phenomena. To date, the neutrino-nucleon cross section has been examined across a range of energies spanning from a few hundred MeV to PeV. However, the pursuit of ultra-high-energy (UHE) cosmic neutrinos, surpassing 100 PeV in energy, holds the promise of further advancements. In the next 10-20 years, UHE neutrino telescopes, currently in the planning stage, may ultimately succeed in their detection. This article presents pioneering and comprehensive estimation forecasts for the ultra-high-energy neutrino-nucleon cross section, with a specific focus on the employment of neutrino radio-detection within the IceCube-Gen2 experiment. The study incorporates cutting-edge methodologies in UHE neutrino flux prediction, neutrino propagation within the Earth, radio detection techniques, and the treatment of background data to facilitate accurate cross section measurement projections. Assuming the successful detection of at least a few tens of UHE neutrino-induced events over a 10-year period, IceCube-Gen2 could achieve, for the first time, the measurement of the cross section at center-of-mass energies of approximately $\sqrt{s} \approx 10$--100 TeV. Furthermore, if the number of events exceeds one hundred, the precision of the cross section measurement could be comparable to its corresponding theoretical prediction., Comment: 8 pages, 4 figures, 2 figures. Submitted as a proceeding for ICRC 2023
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- 2023
17. Leveraging Data for Policy Change: A Descriptive Analysis of Latino Men's Postsecondary Enrollment and Degree Attainment Patterns in Texas
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Burmicky, Jorge, Ryu, Wonsun, Palomín, Leticia, and Sáenz, Victor B.
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This study examines the educational outcomes of Latino men in Texas by conducting a descriptive policy-focused disaggregate analysis of longitudinal data from the 8th Grade Cohort Longitudinal Study and the Integrated Postsecondary Data System (IPEDS). Based on our analysis, we provide context and understanding of the progress made towards meeting the goals set forth in 60x30TX, a statewide higher education plan led by the Texas Higher Education Coordinating Board. Our findings reveal educational equity disparities by looking at the postsecondary enrollment and degree/certificate completion patterns of Latino men in Texas. In addition, we provide an analysis of differences in educational equity disparities across various regions of the state. We share policy planning implications informed by practitioner input to better contextualize our findings.
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- 2022
18. Using Artificial Intelligence in the OKRs Methodology: A Theoretical Framework
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Gonçalves, Victor B., Palmeira, Eduardo G. Q., Martin, Victor B. Saint, Moraes, Ígor A., de Siqueira, Alexandre G., Cardoso, Alexandre, Kacprzyk, Janusz, Series Editor, Gomide, Fernando, Advisory Editor, Kaynak, Okyay, Advisory Editor, Liu, Derong, Advisory Editor, Pedrycz, Witold, Advisory Editor, Polycarpou, Marios M., Advisory Editor, Rudas, Imre J., Advisory Editor, Wang, Jun, Advisory Editor, Rocha, Álvaro, editor, Ferrás, Carlos, editor, Hochstetter Diez, Jorge, editor, and Diéguez Rebolledo, Mauricio, editor
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- 2024
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19. Cell cycle time in the root apical meristem of angiosperms and its dependence on holoploid DNA content
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Zhukovskaya, Natalia V. and Ivanov, Victor B.
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- 2024
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20. Scale mixtures of multivariate centered skew-normal distributions
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de Freitas, João Victor B., Bondon, Pascal, Azevedo, Caio L. N., Reisen, Valdério A., and Nobre, Juvêncio S.
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- 2024
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21. Detection and evaluation of parameters influencing the identification of heterozygous-enriched regions in Holstein cattle based on SNP chip or whole-genome sequence data
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Mulim, Henrique A., Pedrosa, Victor B., Pinto, Luis Fernando Batista, Tiezzi, Francesco, Maltecca, Christian, Schenkel, Flavio S., and Brito, Luiz F.
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- 2024
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22. Nucleosome reorganisation in breast cancer tissues
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Jacob, Divya R., Guiblet, Wilfried M., Mamayusupova, Hulkar, Shtumpf, Mariya, Ciuta, Isabella, Ruje, Luminita, Gretton, Svetlana, Bikova, Milena, Correa, Clark, Dellow, Emily, Agrawal, Shivam P., Shafiei, Navid, Drobysevskaja, Anastasija, Armstrong, Chris M., Lam, Jonathan D. G., Vainshtein, Yevhen, Clarkson, Christopher T., Thorn, Graeme J., Sohn, Kai, Pradeepa, Madapura M., Chandrasekharan, Sankaran, Brooke, Greg N., Klenova, Elena, Zhurkin, Victor B., and Teif, Vladimir B.
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- 2024
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23. Development of the intelligent knee osteoarthritis lifestyle app: a person-based approach
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Stevenson, Richard D. M., Chowdhury, Enhad A., Inza, Victor B., Western, Max J., Walsh, Nicola E., Jones, Simon L., and Bilzon, James L. J.
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- 2024
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24. A high-density and high-confinement tokamak plasma regime for fusion energy
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Ding, S., Garofalo, A. M., Wang, H. Q., Weisberg, D. B., Li, Z. Y., Jian, X., Eldon, D., Victor, B. S., Marinoni, A., Hu, Q. M., Carvalho, I. S., Odstrčil, T., Wang, L., Hyatt, A. W., Osborne, T. H., Gong, X. Z., Qian, J. P., Huang, J., McClenaghan, J., Holcomb, C. T., and Hanson, J. M.
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- 2024
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25. Imprints of the nuclear symmetry energy slope in gravitational wave signals emanating from neutron stars
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Lopes, Luiz L., Alves, Victor B. T., Flores, César O. V., and Lugones, German
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High Energy Physics - Phenomenology ,General Relativity and Quantum Cosmology ,Nuclear Theory - Abstract
We investigate possible traces of the nuclear symmetry energy slope ($L$) in the gravitational wave emission of neutron stars. For fixed stellar mass values, we examine how the slope influences the stellar radius, compactness, the tidal deformability, the frequency of the quadrupole fundamental fluid mode, and the damping time of the mode due to the gravitational wave emission. We demonstrate that all these physical quantities are sensitive to the slope and could potentially impose significant constraints on it., Comment: Published Version
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- 2023
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26. Combining Active and Passive Simulations for Secondary Motion
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O'Brien, James F., Zordan, Victor B., and Hodgins, Jessica K.
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Computer Science - Graphics ,I.3.5 - Abstract
Objects that move in response to the actions of a main character often make an important contribution to the visual richness of an animated scene. We use the term "secondary motion" to refer to passive motions generated in response to the movements of characters and other objects or environmental forces. Secondary motions aren't normally the mail focus of an animated scene, yet their absence can distract or disturb the viewer, destroying the illusion of reality created by the scene. We describe how to generate secondary motion by coupling physically based simulations of passive objects to actively controlled characters.
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- 2023
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27. Detection and evaluation of parameters influencing the identification of heterozygous-enriched regions in Holstein cattle based on SNP chip or whole-genome sequence data
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Henrique A. Mulim, Victor B. Pedrosa, Luis Fernando Batista Pinto, Francesco Tiezzi, Christian Maltecca, Flavio S. Schenkel, and Luiz F. Brito
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Balancing selection ,Genetic diversity ,Heterozygous advantage ,Livestock genetics ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Abstract Background A heterozygous-enriched region (HER) is a genomic region with high variability generated by factors such as balancing selection, introgression, and admixture processes. In this study, we evaluated the genomic background of HERs and the impact of different parameters (i.e., minimum number of SNPs in a HER, maximum distance between two consecutive SNPs, minimum length of a HER, maximum number of homozygous allowed in a HER) and scenarios [i.e., different SNP panel densities and whole-genome sequence (WGS)] on the detection of HERs. We also compared HERs characterized in Holstein cattle with those identified in Angus, Jersey, and Norwegian Red cattle using WGS data. Results The parameters used for the identification of HERs significantly impact their detection. The maximum distance between two consecutive SNPs did not impact HERs detection as the same average of HERs (269.31 ± 787.00) was observed across scenarios. However, the minimum number of markers, maximum homozygous markers allowed inside a HER, and the minimum length size impacted HERs detection. For the minimum length size, the 10 Kb scenario showed the highest average number of HERs (1,364.69 ± 1,483.64). The number of HERs decreased as the minimum number of markers increased (621.31 ± 1,271.83 to 6.08 ± 21.94), and an opposite pattern was observed for the maximum homozygous markers allowed inside a HER (54.47 ± 195.51 to 494.89 ± 1,169.35). Forty-five HER islands located in 23 chromosomes with high Tajima’s D values and differential among the observed and estimated heterozygosity were detected in all evaluated scenarios, indicating their ability to potentially detect regions under balancing selection. In total, 3,440 markers and 28 genes previously related to fertility (e.g., TP63, ZSCAN23, NEK5, ARHGAP44), immunity (e.g., TP63, IGC, ARHGAP44), residual feed intake (e.g., MAYO9A), stress sensitivity (e.g., SERPINA6), and milk fat percentage (e.g., NOL4) were identified. When comparing HER islands among breeds, there were substantial overlaps between Holstein with Angus (95.3%), Jersey (94.3%), and Norwegian Red cattle (97.1%), indicating conserved HER across taurine breeds. Conclusions The detection of HERs varied according to the parameters used, but some HERs were consistently identified across all scenarios. Heterozygous genotypes observed across generations and breeds appear to be conserved in HERs. The results presented could serve as a guide for defining HERs detection parameters and further investigating their biological roles in future studies.
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- 2024
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28. Machine learning methods for genomic prediction of cow behavioral traits measured by automatic milking systems in North American Holstein cattle
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Victor B. Pedrosa, Shi-Yi Chen, Leonardo S. Gloria, Jarrod S. Doucette, Jacquelyn P. Boerman, Guilherme J.M. Rosa, and Luiz F. Brito
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accuracy of prediction ,automatic milking systems ,deep learning ,sensor-based systems ,Dairy processing. Dairy products ,SF250.5-275 ,Dairying ,SF221-250 - Abstract
ABSTRACT: Identifying genome-enabled methods that provide more accurate genomic prediction is crucial when evaluating complex traits such as dairy cow behavior. In this study, we aimed to compare the predictive performance of traditional genomic prediction methods and deep learning algorithms for genomic prediction of milking refusals (MREF) and milking failures (MFAIL) in North American Holstein cows measured by automatic milking systems (milking robots). A total of 1,993,509 daily records from 4,511 genotyped Holstein cows were collected by 36 milking robot stations. After quality control, 57,600 SNPs were available for the analyses. Four genomic prediction methods were considered: Bayesian least absolute shrinkage and selection operator (LASSO), multiple layer perceptron (MLP), convolutional neural network (CNN), and GBLUP. We implemented the first 3 methods using the Keras and TensorFlow libraries in Python (v.3.9) but the GBLUP method was implemented using the BLUPF90+ family programs. The accuracy of genomic prediction (mean square error) for MREF and MFAIL was 0.34 (0.08) and 0.27 (0.08) based on LASSO, 0.36 (0.09) and 0.32 (0.09) for MLP, 0.37 (0.08) and 0.30 (0.09) for CNN, and 0.35 (0.09) and 0.31(0.09) based on GBLUP, respectively. Additionally, we observed a lower reranking of top selected individuals based on the MLP versus CNN methods compared with the other approaches for both MREF and MFAIL. Although the deep learning methods showed slightly higher accuracies than GBLUP, the results may not be sufficient to justify their use over traditional methods due to their higher computational demand and the difficulty of performing genomic prediction for nongenotyped individuals using deep learning procedures. Overall, this study provides insights into the potential feasibility of using deep learning methods to enhance genomic prediction accuracy for behavioral traits in livestock. Further research is needed to determine their practical applicability to large dairy cattle breeding programs.
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- 2024
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29. Justification of Optimal Operating Parameters of the Field Cultivator Tool through Determining Traction Resistance
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Igor V. Bozhko, Sergey I. Kambulov, Galina G. Parkhomenko, Victor B. Rykov, and Dmitry S. Podlesny
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optimal operating parameters ,traction resistance ,field cultivator tool ,mathematical model ,regression analysis ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Technology (General) ,T1-995 - Abstract
Introduction. The technological operation of soil tillage is an energy-intensive preparatory operation. The traction resistance of tillage units has a direct impact on this indicator. Aim of the Study. The study is aimed at searching optimal operating parameters for the field cultivator tool through determining the traction resistance created by this tool. Materials and Methods. The study was carried out in the field on an experimental facility using a full factorial experiment technique with a working model based on a three-level design. Results. Through the regression analysis of experimental data, there was obtained a mathematical model that allows determining the optimal operating parameters for the field cultivator tool when performing a technological operation of soil tillage. Discussion and Conclusion. While calculating, it was found that the lowest traction resistance PТ = 0,72 kN created by the tool is for the following values: tillage depth h = 4 cm, crumbling angle of the left-hand and right-hand flat-cutting wings f = 0° and the speed of the tillage unit v = 2,61 m/s. As the optimal operating parameters for a field cultivator tool, determined using the obtained mathematical model, it is recommended to use the crumbling angle of the left-hand and right-hand flat-cutting wings of the working body f = 0°, and the speed of the tillage unit v = 2,91 m/s. Taking into account the recommended optimal operating parameters of the tool, it is possible to calculate the value of the traction resistance index at different tillage depths. The traction resistance will change within the range of 0.79–1.81 kN, when the soil tillage depth changes from 4 to 12 cm. The resulting mathematical model of the traction resistance created by the tool will allow a more accurate approach to the issue of designing agricultural machines.
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- 2024
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30. Genome-wide association and functional genomic analyses for body conformation traits in North American Holstein cattle
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Luis Paulo B. Sousa Junior, Luis Fernando B. Pinto, Valdecy A. R. Cruz, Gerson A. Oliveira Junior, Hinayah R. Oliveira, Tatiane S. Chud, Victor B. Pedrosa, Filippo Miglior, Flávio S. Schenkel, and Luiz F. Brito
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dairy cattle ,high density genotypes ,GWAS ,type traits ,imputation ,Genetics ,QH426-470 - Abstract
Body conformation traits are directly associated with longevity, fertility, health, and workability in dairy cows and have been under direct genetic selection for many decades in various countries worldwide. The main objectives of this study were to perform genome-wide association studies and functional enrichment analyses for fourteen body conformation traits using imputed high-density single nucleotide polymorphism (SNP) genotypes. The traits analyzed include body condition score (BCS), body depth (BD), bone quality (BQ), chest width (CW), dairy capacity (DC), foot angle (FAN), front legs view (FLV), heel depth (HDe), height at front end (HFE), locomotion (LOC), rear legs rear view (RLRV), rear legs side view (RLSV), stature (ST), and a composite feet and legs score index (FL) of Holstein cows scored in Canada. De-regressed estimated breeding values from a dataset of 39,135 North American Holstein animals were used as pseudo-phenotypes in the genome-wide association analyses. A mixed linear model was used to estimate the SNP effects, which ranged from 239,533 to 242,747 markers depending on the trait analyzed. Genes and quantitative trait loci (QTL) located up to 100 Kb upstream or downstream of the significant SNPs previously cited in the Animal QTLdb were detected, and functional enrichment analyses were performed for the candidate genes identified for each trait. A total of 20, 60, 13, 17, 27, 8, 7, 19, 4, 10, 13, 15, 7, and 13 genome-wide statistically significant SNPs for Bonferroni correction based on independent chromosomal segments were identified for BCS, BD, BQ, CW, DC, FAN, FLV, HDe, HFE, LOC, RLRV, RLSV, ST, and FL, respectively. The significant SNPs were located across the whole genome, except on chromosomes BTA24, BTA27, and BTA29. Four markers (for BCS, BD, HDe, and RLRV) were statistically significant when considering a much stricter threshold for the Bonferroni correction for multiple tests. Moreover, the genomic regions identified overlap with various QTL previously reported for the trait groups of exterior, health, meat and carcass, milk, production, and reproduction. The functional enrichment analyses revealed 27 significant gene ontology terms. These enriched genomic regions harbor various candidate genes previously reported as linked to bone development, metabolism, as well as infectious and immunological diseases.
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- 2024
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31. Transcribing and Translating Bilingual Text using OCR Tesseract and Deep Learning.
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Patrick D. Cerna, Rhodessa J. Cascaro, Khing Dave E. Laurente, Joshua Victor B. Cabahug, Deus William B. Carino, and Jakob Hans Maraguinot
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- 2024
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32. An approach to the use of stereo vision system and AI for the accessibility of the visually impaired.
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José Ricardo B. Da Silva, João Victor B. Soares, Luana R. Gomes, and José R. Sicchar
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- 2024
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33. Astrocyte Controlled SNN Dynamic Induced by Sensor Input
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Stasenko, Sergey V., Kazantsev, Victor B., Filipe, Joaquim, Editorial Board Member, Ghosh, Ashish, Editorial Board Member, Prates, Raquel Oliveira, Editorial Board Member, Zhou, Lizhu, Editorial Board Member, Balandin, Dmitry, editor, Barkalov, Konstantin, editor, and Meyerov, Iosif, editor
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- 2024
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34. Dynamic image recognition in a spiking neuron network supplied by astrocytes
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Stasenko, Sergey V. and Kazantsev, Victor B.
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Quantitative Biology - Neurons and Cognition - Abstract
Mathematical model of spiking neuron network (SNN) supplied by astrocytes is investigated. The astrocytes are specific type of brain cells which are not electrically excitable but inducing chemical modulations of neuronal firing. We analyzed how the astrocytes influence on images encoded in the form of dynamic spiking pattern of the SNN. Serving at much slower time scale the astrocytic network interacting with the spiking neurons can remarkably enhance the image recognition quality. Spiking dynamics was affected by noise distorting the information image. We demonstrated that the activation of astrocyte can significantly suppress noise influence improving dynamic image representation by the SNN., Comment: arXiv admin note: text overlap with arXiv:2210.01014
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- 2022
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35. Failure of neuron network coherence induced by SARS-CoV-2-infected astrocytes
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Stasenko, Sergey V., Hramov, Alexander E., and Kazantsev, Victor B.
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Quantitative Biology - Neurons and Cognition - Abstract
Coherent activations of brain neuron networks underlay many physiological functions associated with various behavioral states. These synchronous fluctuations in the electrical activity of the brain are also referred to as brain rhythms. At the cellular level, the rhythmicity can be induced by various mechanisms of intrinsic oscillations in neurons or network circulation of excitation between synaptically coupled neurons. One of the specific mechanisms concerns the activity of brain astrocytes that accompany neurons and can coherently modulate synaptic contacts of neighboring neurons, synchronizing their activity. Recent studies have shown that coronavirus infection (Covid-19), entering the central nervous system and infecting astrocytes, causes various metabolic disorders. Specifically, Covid-19 can depress the synthesis of astrocytic glutamate and GABA. It is also known that in the postcovid state, patients may suffer from symptoms of anxiety and impaired cognitive functions, which may be a consequence of disturbed brain rhythms. We propose a mathematical model of a spiking neural network accompanied by astrocytes capable to generate quasi-synchronous rhythmic bursting discharges. The model predicts that if the astrocytes are infected, and the release of glutamate is depressed, then normal burst rhythmicity suffers dramatically. Interestingly, in some cases, the failure of network coherence may be intermittent with intervals of normal rhythmicity, or the synchronization can completely disappears.
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- 2022
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36. Report of the Topical Group on Cosmic Probes of Fundamental Physics for for Snowmass 2021
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Adhikari, Rana X., Anchordoqui, Luis A., Fang, Ke, Sathyaprakash, B. S., Tollefson, Kirsten, Lewis, Tiffany R., Engel, Kristi, Aboubrahim, Amin, Akarsu, Ozgur, Akrami, Yashar, Aloisio, Roberto, Batista, Rafael Alves, Ballardini, Mario, Ballmer, Stefan W., Bechtol, Ellen, Benisty, David, Berti, Emanuele, Birrer, Simon, Bonilla, Alexander, Brito, Richard, Bustamante, Mauricio, Caldwell, Robert, Cardoso, Vitor, Chakrabarti, Sukanya, Chen, Thomas Y., Cicoli, Michele, Clesse, Sebastien, Coleman, Alan, Cui, Yanou, Cusin, Giulia, Daylan, Tansu, Dienes, Keith R., Di Valentino, Eleonora, Dvorkin, Cora, Escamilla-Rivera, Celia, Farrar, Glennys R., Feng, Jonathan L., Frusciante, Noemi, Garcia-Bellido, Juan, Canal, Carlos Garcia, Garzelli, Maria Vittoria, Glombitza, Jonas, Golup, Geraldina, Gritsevich, Maria, Haiman, Zoltan, Haro, Jaume, Hazra, Dhiraj Kumar, Heavens, Alan, Holz, Daniel, Horandel, Jorg R., Ishak, Mustapha, Ivanov, Mikhail M., Joudaki, Shahab, Kampert, Karl-Heinz, Karwin, Christopher M., Keeley, Ryan, Klasen, Michael, Konoplich, Rostislav, Krizmanic, John F., Kumar, Suresh, L'Huillier, Benjamin, Levi, Noam, Mandic, Vuk, Marra, Valerio, Martins, C. J. A. P., Matarrese, Sabino, Mayotte, Eric, Mayotte, Sonja, Mersini-Houghton, Laura, Meyers, Joel, Miller, Andrew L., Mottola, Emil, Mukherjee, Suvodip, Murase, Kohta, Muzio, Marco Stein, Nath, Pran, Ng, Ken K. Y., No, Jose Miguel, Nunes, Rafael C., Olinto, Angela V., Pace, Francesco, Pan, Supriya, Bergliaffa, Santiago E. Perez, Pogosian, Levon, Read, Jocelyn, Reininghaus, Maximilian, Reno, Mary Hall, Riess, Adam G., Sakellariadou, Mairi, Sakharov, Alexander S., Salucci, Paolo, Santander, Marcos, Santos, Eva, Sarazin, Fred, Saridakis, Emmanuel N., Sciutto, Sergio J., Shafieloo, Arman, Shoemaker, David H., Sinha, Kuver, Soldin, Dennis, Soriano, Jorge F., Staicova, Denitsa, Sun, Ling, Steer, D. A., Thomas, Brooks, Tomsick, John A., Valera, Victor B., Vazquez, J. Alberto, Venters, Tonia M., Visinelli, Luca, Watson, Scott, Webb, John K., Weltman, Amanda, White, Graham, Wissel, Stephanie, Yadav, Anil Kumar, Yang, Fengwei, Yang, Weiqiang, Yunes, Nicolas, Yushkov, Alexey, and Zhang, Haocheng
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High Energy Physics - Phenomenology ,Astrophysics - High Energy Astrophysical Phenomena - Abstract
Cosmic Probes of Fundamental Physics take two primary forms: Very high energy particles (cosmic rays, neutrinos, and gamma rays) and gravitational waves. Already today, these probes give access to fundamental physics not available by any other means, helping elucidate the underlying theory that completes the Standard Model. The last decade has witnessed a revolution of exciting discoveries such as the detection of high-energy neutrinos and gravitational waves. The scope for major developments in the next decades is dramatic, as we detail in this report., Comment: Report of theTopical Group on Cosmic Probes of Fundamental Physics, for the U.S. decadal Particle Physics Planning Exercise (Snowmass 2021)
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- 2022
37. A comprehensive meta-analysis of genetic parameters for resilience and productivity indicator traits in Holstein cattle
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Jacob M. Maskal, Victor B. Pedrosa, Hinayah Rojas de Oliveira, and Luiz F. Brito
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dairy cattle ,genetic correlation ,heritability ,Holstein-Friesian ,pooled estimates ,Dairy processing. Dairy products ,SF250.5-275 ,Dairying ,SF221-250 - Abstract
ABSTRACT: Selection for resilience indicator (RIND) traits in Holstein cattle is becoming an important breeding objective as the worldwide population is expected to be exposed to increased environmental stressors due to both climate change and changing industry standards. However, genetic correlations between RIND and productivity indicator (PIND) traits, which are already being selected for and have the most economic value, are often unfavorable. As a result, it is necessary to fully understand these genetic relationships when incorporating novel traits into selection indices, so that informed decisions can be made to fully optimize selection for both groups of traits. In the past 2 decades, there have been many estimates of RIND traits published in the literature, albeit in small populations. To provide valuable pooled summary estimates, a random-effects meta-analysis was conducted for heritability and genetic correlation estimates for PIND and RIND traits in worldwide Holstein cattle. In total, 926 heritability estimates for 9 PIND and 27 RIND traits, along with 362 estimates of genetic correlation (PIND × RIND traits) were collected. Resilience indicator traits were grouped into the following subgroups: Metabolic Diseases, Hoof Health, Udder Health, Fertility, Heat Tolerance, Longevity, and Other. Pooled estimates of heritability for PIND traits ranged from 0.201 ± 0.05 (energy-corrected milk) to 0.377 ± 0.06 (protein content), while pooled estimates of heritability for RIND traits ranged from 0.032 ± 0.02 (incidence of lameness, incidence of milk fever) to 0.497 ± 0.05 (measures of body weight). Pooled estimates of genetic correlations ranged from −0.360 ± 0.25 (protein content vs. milk acetone concentration) to 0.535 ± 0.72 (measures of fat-to-protein ratio vs. milk acetone concentration). Additionally, out of 243 potential genetic correlations between PIND and RIND traits that could have been reported, only 40 had enough published estimates to implement the meta-analysis model. Our results confirmed that the interactions between PIND and RIND traits are complex, and all relationships should be evaluated when incorporating novel traits into selection indices. This study provides a valuable reference for breeders looking to incorporate RIND traits for Holstein cattle into selection indices.
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- 2024
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38. Nucleosome reorganisation in breast cancer tissues
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Divya R. Jacob, Wilfried M. Guiblet, Hulkar Mamayusupova, Mariya Shtumpf, Isabella Ciuta, Luminita Ruje, Svetlana Gretton, Milena Bikova, Clark Correa, Emily Dellow, Shivam P. Agrawal, Navid Shafiei, Anastasija Drobysevskaja, Chris M. Armstrong, Jonathan D. G. Lam, Yevhen Vainshtein, Christopher T. Clarkson, Graeme J. Thorn, Kai Sohn, Madapura M. Pradeepa, Sankaran Chandrasekharan, Greg N. Brooke, Elena Klenova, Victor B. Zhurkin, and Vladimir B. Teif
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Breast cancer ,Nucleosome positioning ,cfDNA ,Chromatin ,Liquid biopsy ,Transcription factors binding ,Medicine ,Genetics ,QH426-470 - Abstract
Abstract Background Nucleosome repositioning in cancer is believed to cause many changes in genome organisation and gene expression. Understanding these changes is important to elucidate fundamental aspects of cancer. It is also important for medical diagnostics based on cell-free DNA (cfDNA), which originates from genomic DNA regions protected from digestion by nucleosomes. Results We have generated high-resolution nucleosome maps in paired tumour and normal tissues from the same breast cancer patients using MNase-assisted histone H3 ChIP-seq and compared them with the corresponding cfDNA from blood plasma. This analysis has detected single-nucleosome repositioning at key regulatory regions in a patient-specific manner and common cancer-specific patterns across patients. The nucleosomes gained in tumour versus normal tissue were particularly informative of cancer pathways, with ~ 20-fold enrichment at CpG islands, a large fraction of which marked promoters of genes encoding DNA-binding proteins. The tumour tissues were characterised by a 5–10 bp decrease in the average distance between nucleosomes (nucleosome repeat length, NRL), which is qualitatively similar to the differences between pluripotent and differentiated cells. This effect was correlated with gene activity, differential DNA methylation and changes in local occupancy of linker histone variants H1.4 and H1X. Conclusions Our study offers a novel resource of high-resolution nucleosome maps in breast cancer patients and reports for the first time the effect of systematic decrease of NRL in paired tumour versus normal breast tissues from the same patient. Our findings provide a new mechanistic understanding of nucleosome repositioning in tumour tissues that can be valuable for patient diagnostics, stratification and monitoring.
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- 2024
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39. Distribution of soil minerals along the toposequence of Hyang-Argopuro Volcanic Mountain, Jember, Indonesia
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Cahyoadi Bowo, Wahyu Hidayat, and Victor B. Asio
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soil development ,toposequence ,tuff ,volcanic minerals ,Agriculture (General) ,S1-972 - Abstract
The study was conducted in the Hyang-Argopuro volcanic mountain in Jember, Indonesia, with the aim of assessing the distribution of soil minerals along a toposequence and their relationship to soil genesis. Three soil profiles representing the upper, middle, and lower slopes of the toposequence were analyzed. The results revealed that the predominant sand minerals in the soils are opaque minerals, weatherable minerals, amphibole groups, and ferromagnesian minerals. The presence of magnetite, primarily found in the soil profile on the upper slope, suggests the effect of the well-drained topography on its formation. Clay mineral analysis showed that halloysite dominates in soil profile 1, along with traces of gibbsite and cristobalite in the surface horizon. Soil profile 2 is characterized by a combination of halloysite and illite, while kaolinite and illite dominate in soil profile 3. The presence of illite in these soils aligns with previous studies conducted in volcanic regions. The degree of soil development follows the sequence: Soil Profile 2 > Soil Profile 1 > Soil Profile 3. This corresponds to the soil classification, where soil profile 3 is classified as an Alfisol, soil profile 1 as a Mollisol, and soil profile 3 as an Inceptisol. The Andic properties, such as low bulk density and high pH in NaF, observed in soil profile 1 suggest its development from an Andisol. Overall, the study findings highlight the significant influence of basaltic andesite parent material, mountainous topography, and warm and wet climate on the mineral composition and development in the area.
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- 2024
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40. Genetic parameters for calf feeding traits derived from automated milk feeding machines and number of bovine respiratory disease treatments in North American Holstein calves
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Jason R. Graham, Maria E. Montes, Victor B. Pedrosa, Jarrod Doucette, Masoomeh Taghipoor, André C. Araujo, Leonardo S. Gloria, Jacquelyn P. Boerman, and Luiz F. Brito
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precision dairy farming ,calf pneumonia ,automatic milk feeding machines ,variance components ,heritability ,Dairy processing. Dairy products ,SF250.5-275 ,Dairying ,SF221-250 - Abstract
ABSTRACT: Precision livestock farming technologies, such as automatic milk feeding machines, have increased the availability of on-farm data collected from dairy operations. We analyzed feeding records from automatic milk feeding machines to evaluate the genetic background of milk feeding traits and bovine respiratory disease (BRD) in North American Holstein calves. Data from 10,076 preweaning female Holstein calves were collected daily over a period of 6 yr (3 yr included per-visit data), and daily milk consumption (DMC), per-visit milk consumption (PVMC), daily sum of drinking duration (DSDD), drinking duration per-visit, daily number of rewarded visits (DNRV), and total number of visits per day were recorded over a 60-d preweaning period. Additional traits were derived from these variables, including total consumption and duration variance (TCV and TDV), feeding interval, drinking speed (DS), and preweaning stayability. A single BRD-related trait was evaluated, which was the number of times a calf was treated for BRD (NTT). The NTT was determined by counting the number of BRD incidences before 60 d of age. All traits were analyzed using single-step genomic BLUP mixed-model equations and fitting either repeatability or random regression models in the BLUPF90+ suite of programs. A total of 10,076 calves with phenotypic records and genotypic information for 57,019 SNP after the quality control were included in the analyses. Feeding traits had low heritability estimates based on repeatability models (0.006 ± 0.0009 to 0.08 ± 0.004). However, total variance traits using an animal model had greater heritabilities of 0.21 ± 0.023 and 0.23 ± 0.024, for TCV and TDV, respectively. The heritability estimates increased with the repeatability model when using only the first 32 d preweaning (e.g., PVMC = 0.040 ± 0.003, DMC = 0.090 ± 0.009, DSDD = 0.100 ± 0.005, DS = 0.150 ± 0.007, DNRV = 0.020 ± 0.002). When fitting random regression models (RRM) using the full dataset (60-d period), greater heritability estimates were obtained (e.g., PVMC = 0.070 [range: 0.020, 0.110], DMC = 0.460 [range: 0.050, 0.680], DSDD = 0.180 [range: 0.010, 0.340], DS = 0.19 [range: 0.070, 0.430], DNRV = 0.120 [range: 0.030, 0.450]) for the majority of the traits, suggesting that RRM capture more genetic variability than the repeatability model with better fit being found for RRM. Moderate negative genetic correlations of −0.59 between DMC and NTT were observed, suggesting that automatic milk feeding machines records have the potential to be used for genetically improving disease resilience in Holstein calves. The results from this study provide key insights of the genetic background of early in-life traits in dairy cattle, which can be used for selecting animals with improved health outcomes and performance.
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- 2024
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41. Genome-wide association and functional genomic analyses for various hoof health traits in North American Holstein cattle
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Luis Paulo B. Sousa, Junior, Luis Fernando B. Pinto, Valdecy A.R. Cruz, Gerson A. Oliveira Jr., Hinayah Rojas de Oliveira, Tatiane S. Chud, Victor B. Pedrosa, Filippo Miglior, Flávio S. Schenkel, and Luiz F. Brito
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dairy cattle ,digital dermatitis ,disease resistance ,hoof disease ,Dairy processing. Dairy products ,SF250.5-275 ,Dairying ,SF221-250 - Abstract
ABSTRACT: Hoof diseases are a major welfare and economic issue in the global dairy cattle production industry, which can be minimized through improved management and breeding practices. Optimal genetic improvement of hoof health could benefit from a deep understanding of the genetic background and biological underpinning of indicators of hoof health. Therefore, the primary objectives of this study were to perform genome-wide association studies, using imputed high-density genetic markers data from North American Holstein cattle, for 8 hoof-related traits: digital dermatitis, sole ulcer, sole hemorrhage, white line lesion, heel horn erosion, interdigital dermatitis, interdigital hyperplasia, and toe ulcer, and a hoof health index. De-regressed estimated breeding values from 25,580 Holstein animals were used as pseudo-phenotypes for the association analyses. The genomic quality control, genotype phasing, and genotype imputation were performed using the PLINK (version 1.9), Eagle (version 2.4.1), and Minimac4 software, respectively. The functional genomic analyses were performed using the GALLO R package and the DAVID platform. We identified 22, 34, 14, 22, 28, 33, 24, 43, and 15 significant markers for digital dermatitis, heel horn erosion, interdigital dermatitis, interdigital hyperplasia, sole hemorrhage, sole ulcer, toe ulcer, white line lesion disease, and the hoof health index, respectively. The significant markers were located across all autosomes, except BTA10, BTA12, BTA20, BTA26, BTA27, and BTA28. Moreover, the genomic regions identified overlap with various previously reported quantitative trait loci for exterior, health, meat and carcass, milk, production, and reproduction traits. The enrichment analyses identified 44 significant gene ontology terms. These enriched genomic regions harbor various candidate genes previously associated with bone development, metabolism, and infectious and immunological diseases. These findings indicate that hoof health traits are highly polygenic and influenced by a wide range of biological processes.
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- 2024
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42. Motion Control Dynamics of Transport Vehicle on Long Descents
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Victor B. Derzhanskii, Igor A. Taratorkin, and Alexander A. Volkov
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analysis ,dynamics ,system ,engine ,protection ,speed ,efficiency ,Mechanical engineering and machinery ,TJ1-1570 - Abstract
The article provides a rationale for the need to develop an additional braking control system for a transport vehicle to limit the movement speed under the action of rolling forces and to protect the engine from exceeding the permissible speed, “overshooting” the speed. Design options for four systems that dissipate kinetic energy are considered, and the effectiveness of their use is assessed: in periodically switched off clutches in the transmission; in a hydraulic retarder, containing a rotor and a stator, where kinetic energy turns into heat and is dissipated into the environment; in two complex hydrodynamic transmissions, the design of which integrates a torque converter and a hydraulic retarder. In the first version of the system, kinetic energy turns into heat when the transmission clutches are periodically turned on and off; in the second option, energy transformation is carried out in the retarder circulation circle containing the rotor and the stator; in the third embodiment, in an additional circuit of the circulation circle of the working fluid of a hydrodynamic transmission, containing a pump, turbine, reactor wheels and an additionally introduced fourth wheel, which can serve as the stator; in the fourth version, the pump wheel of the torque converter can perform the additional function of the hydraulic retarder rotor, and the hydrodynamic transmission housing can function as the stator.
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- 2024
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43. Development of the intelligent knee osteoarthritis lifestyle app: a person-based approach
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Richard D. M. Stevenson, Enhad A. Chowdhury, Victor B. Inza, Max J. Western, Nicola E. Walsh, Simon L. Jones, and James L. J. Bilzon
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Knee osteoarthritis ,Self-management ,Physical activity ,Mobile application ,Digital health ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Abstract Background Knee osteoarthritis is one of the most prevalent long term health conditions globally. Exercise and physical activity are now widely recognised to significantly reduce joint pain, improve physical function and quality of life in patients with knee osteoarthritis. However, prescribed exercise without regular contact with a healthcare professional often results in lower adherence and poorer health outcomes. Digital mobile health (mHealth) technologies offer great potential to support people with long-term conditions such as knee osteoarthritis more efficiently and effectively and with relatively lower cost than existing interventions. However, there are currently very few mHealth interventions for the self-management of knee osteoarthritis. The aim of the present study was to describe the development process of a mHealth app to extend the support for physical activity and musculoskeletal health beyond short-term, structured rehabilitation through self-management, personalised physical activity, education, and social support. Methods The development of the intelligent knee osteoarthritis lifestyle application intervention involved an iterative and interconnected process comprising intervention ‘planning’ and ‘optimisation’ informed by the person-based approach framework for the development of digital health interventions. The planning phase involved a literature review and collection of qualitative data obtained from focus groups with individuals with knee osteoarthritis (n = 26) and interviews with relevant physiotherapists (n = 5) to generate ‘guiding principles’ for the intervention. The optimisation phase involved usability testing (n = 7) and qualitative ‘think aloud’ sessions (n = 6) with potential beneficiaries to refine the development of the intervention. Results Key themes that emerged from the qualitative data included the need for educational material, modifying activities to suit individual abilities and preferences as well as the inclusion of key features such as rehabilitation exercises. Following a user-trial further changes were made to improve the usability of the application. Conclusions Using a systematic person-based, development approach, we have developed the intelligent knee osteoarthritis lifestyle application to help people maintain physical activity behaviour. The app extends the support for physical activity and musculoskeletal health beyond short-term, structured rehabilitation through personalised physical activity guidance, education, and social support.
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- 2024
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44. Bayesian response adaptive randomization design with a composite endpoint of mortality and morbidity
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Xu, Zhongying, Bandos, Andriy I., Ma, Tianzhou, Tang, Lu, Talisa, Victor B., and Chang, Chung-Chou H.
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Statistics - Methodology - Abstract
Allocating patients to treatment arms during a trial based on the observed responses accumulated prior to the decision point, and sequential adaptation of this allocation,, could minimize the expected number of failures or maximize total benefit to patients. In this study, we developed a Bayesian response adaptive randomization (RAR) design targeting the endpoint of organ support-free days (OSFD) for patients admitted to the intensive care units (ICU). The OSFD is a mixture of mortality and morbidity assessed by the number of days of free of organ support within a predetermined time-window post-randomization. In the past, researchers treated OSFD as an ordinal outcome variable where the lowest category is death. We propose a novel RAR design for a composite endpoint of mortality and morbidity, e.g., OSFD, by using a Bayesian mixture model with a Markov chain Monte Carlo sampling to estimate the posterior probability of OSFD and determine treatment allocation ratios at each interim. Simulations were conducted to compare the performance of our proposed design under various randomization rules and different alpha spending functions. The results show that our RAR design using Bayesian inference allocated more patients to the better performing arm(s) compared to other existing adaptive rules while assuring adequate power and type I error rate control for the across a range of plausible clinical scenarios.
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- 2022
45. Point sources of ultra-high-energy neutrinos: minimalist predictions for near-future discovery
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Fiorillo, Damiano F. G., Bustamante, Mauricio, and Valera, Victor B.
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Astrophysics - High Energy Astrophysical Phenomena ,High Energy Physics - Experiment ,High Energy Physics - Phenomenology - Abstract
The discovery of ultra-high-energy neutrinos, with energies above 100 PeV, may soon be within reach of upcoming neutrino telescopes. We present a robust framework to compute the statistical significance of point-source discovery via the detection of neutrino multiplets. We apply it to the radio array component of IceCube-Gen2. To identify a source with $3\sigma$ significance, IceCube-Gen2 will need to detect a triplet, at best, and an octuplet, at worst, depending on whether the source is steady-state or transient, and on its position in the sky. The discovery, or absence, of sources significantly constrains the properties of the source population., Comment: Submission to SciPost Phys. Proc., presented at the 21st International Symposium on Very High Energy Cosmic Ray Interactions (ISVHECRI 2022)
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- 2022
46. Near-future discovery of point sources of ultra-high-energy neutrinos
- Author
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Fiorillo, Damiano F. G., Bustamante, Mauricio, and Valera, Victor B.
- Subjects
Astrophysics - High Energy Astrophysical Phenomena ,High Energy Physics - Experiment ,High Energy Physics - Phenomenology - Abstract
Upcoming neutrino telescopes may discover ultra-high-energy (UHE) cosmic neutrinos, with energies beyond 100 PeV, in the next 10-20 years. Finding their sources would identify guaranteed sites of interaction of UHE cosmic rays, whose origin is unknown. We search for sources by looking for multiplets of UHE neutrinos arriving from similar directions. Our forecasts are state-of-the-art, geared at neutrino radio-detection in IceCube-Gen2. They account for detector energy and angular response, and for critical, but uncertain backgrounds. Sources at declination of $-45^\circ$ to $0^\circ$ will be easiest to discover. Discovering even one steady-state source in 10 years would imply that the source has an UHE neutrino luminosity at least larger than about $10^{43}$ erg/s (depending on the source redshift evolution). Discovering no transient source would disfavor transient sources brighter than $10^{53}$ erg as dominant. Our results aim to inform the design of upcoming detectors., Comment: 12 pages, 3 figures, plus references and technical appendices
- Published
- 2022
- Full Text
- View/download PDF
47. High-Energy and Ultra-High-Energy Neutrinos
- Author
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Ackermann, Markus, Agarwalla, Sanjib K., Alvarez-Muñiz, Jaime, Batista, Rafael Alves, Argüelles, Carlos A., Bustamante, Mauricio, Clark, Brian A., Cummings, Austin, Das, Sudipta, Decoene, Valentin, Denton, Peter B., Dornic, Damien, Dzhilkibaev, Zhan-Arys, Farzan, Yasaman, Garcia, Alfonso, Garzelli, Maria Vittoria, Glaser, Christian, Heijboer, Aart, Hörandel, Jörg R., Illuminati, Giulia, Jeong, Yu Seon, Kelley, John L., Kelly, Kevin J., Kheirandish, Ali, Klein, Spencer R., Krizmanic, John F., Larson, Michael J., Lu, Lu, Murase, Kohta, Narang, Ashish, Otte, Nepomuk, Prechelt, Remy L., Prohira, Steven, Reno, Mary Hall, Resconi, Elisa, Santander, Marcos, Suvorova, Olga Vasil'evna, Valera, Victor B., Vandenbroucke, Justin, Wiencke, Lawrence, Wissel, Stephanie, Yoshida, Shigeru, Yuan, Tianlu, Zas, Enrique, Zhelnin, Pavel, and Zhou, Bei
- Subjects
High Energy Physics - Phenomenology ,Astrophysics - High Energy Astrophysical Phenomena ,High Energy Physics - Experiment - Abstract
Astrophysical neutrinos are excellent probes of astroparticle physics and high-energy physics. With energies far beyond solar, supernovae, atmospheric, and accelerator neutrinos, high-energy and ultra-high-energy neutrinos probe fundamental physics from the TeV scale to the EeV scale and beyond. They are sensitive to physics both within and beyond the Standard Model through their production mechanisms and in their propagation over cosmological distances. They carry unique information about their extreme non-thermal sources by giving insight into regions that are opaque to electromagnetic radiation. This white paper describes the opportunities astrophysical neutrino observations offer for astrophysics and high-energy physics, today and in coming years., Comment: Contribution to Snowmass 2021, updated to include community feedback
- Published
- 2022
48. Author Correction: A high-density and high-confinement tokamak plasma regime for fusion energy
- Author
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Ding, S., Garofalo, A. M., Wang, H. Q., Weisberg, D. B., Li, Z. Y., Jian, X., Eldon, D., Victor, B. S., Marinoni, A., Hu, Q. M., Carvalho, I. S., Odstrčil, T., Wang, L., Hyatt, A. W., Osborne, T. H., Gong, X. Z., Qian, J. P., Huang, J., McClenaghan, J., Holcomb, C. T., and Hanson, J. M.
- Published
- 2024
- Full Text
- View/download PDF
49. A calibrated scale to measure heritage learning in digital environments. A network analysis approach
- Author
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Fontal, Olaia, Ibañez-Etxeberria, Alex, Arias, Víctor B., and Arias, Benito
- Published
- 2024
- Full Text
- View/download PDF
50. Maryland's Global Budget Revenue Program and Equitable Access to Esophagectomy for Esophageal Cancer
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Yang, Victor B., Rando, Hannah J., Menta, Arjun K., Zhao, Xiyu, Blum, Jacob, Battafarano, Richard, Broderick, Stephen, Yang, Stephen C., and Ha, Jinny
- Published
- 2024
- Full Text
- View/download PDF
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