77 results on '"Vickery T"'
Search Results
2. Thermal hazards and safe scale-up of reactions containing dimethyl sulfoxide
- Author
-
Lam T. T., Vickery T., and Tuma Linda
- Published
- 2006
- Full Text
- View/download PDF
3. The Number of Attentional Foci and Their Precision Are Dissociated in the Posterior Parietal Cortex
- Author
-
Shim, Won Mok, Alvarez, G. A., Vickery, T. J., and Jiang, Y. V.
- Published
- 2010
- Full Text
- View/download PDF
4. Preliminary Results Of A Phase Ib Clinical Trial Of A Neoantigen Dna Vaccine For Pancreatic Cancer
- Author
-
Cullinan, D., primary, McLellan, M., additional, Zhang, X., additional, Vickery, T., additional, Myers, N., additional, Sturmoski, M., additional, Ruzinova, M., additional, Hundal, J., additional, Miller, C., additional, Griffith, M., additional, Schreiber, R., additional, Lim, K., additional, Goedegebuure, S., additional, Hawkins, W., additional, and Gillanders, W., additional
- Published
- 2020
- Full Text
- View/download PDF
5. Aberrations in Cell Signaling Quantified in Diabetic Murine Globes after Injury
- Author
-
Nicholas A. Azzari, Kristen L. Segars, Srikar Rapaka, Landon Kushimi, Celeste B. Rich, and Vickery Trinkaus-Randall
- Subjects
cornea ,diabetes ,cell signaling ,wound healing ,live cell imaging ,Cytology ,QH573-671 - Abstract
The corneal epithelium is an avascular structure that has a unique wound healing mechanism, which allows for rapid wound closure without compromising vision. This wound healing mechanism is attenuated in diabetic patients, resulting in poor clinical outcomes and recurrent non-healing erosion. We investigated changes in cellular calcium signaling activity during the wound response in murine diabetic tissue using live cell imaging from both ex vivo and in vitro models. The calcium signaling propagation in diabetic cells was significantly decreased and displayed altered patterns compared to non-diabetic controls. Diabetic cells and tissue display distinct expression of the purinergic receptor, P2X7, which mediates the wound healing response. We speculate that alterations in P2X7 expression, interactions with other proteins, and calcium signaling activity significantly impact the wound healing response. This may explain aberrations in the diabetic wound response.
- Published
- 2023
- Full Text
- View/download PDF
6. Diabetes promotes an inflammatory macrophage phenotype and atherosclerosis through acyl-CoA synthetase 1
- Author
-
Barnhart, S., Chait, A., Pennathur, S., Averill, M. M., Kramer, F., Braun, K. R., Sanda, S., Li, L. O., Potter-Perigo, S., Yuan, W., Becker, L., Serhan, C. N., Vivekanandan-Giri, A., Coleman, R. A., Bornfeldt, K. E., Vickery, T., Wight, T. N., Kanter, J. E., and Heinecke, J. W.
- Abstract
Author contributions: J.E.K., L.B., C.N.S., and K.E.B. designed research; J.E.K., F.K., S.B., M.M.A., A.V.-G., T.V., L.O.L., L.B., K.R.B., and S.P.-P. performed research; W.Y., A.C., S.S., T.N.W., J.W.H., and R.A.C. contributed new reagents/analytic tools; J.E.K., L.B., S.S., S.P., and K.E.B. analyzed data; and J.E.K. and K.E.B. wrote the paper.
- Published
- 2012
- Full Text
- View/download PDF
7. Opponent Identity Influences Value Learning in Simple Games
- Author
-
Vickery, T. J., primary, Kleinman, M. R., additional, Chun, M. M., additional, and Lee, D., additional
- Published
- 2015
- Full Text
- View/download PDF
8. Unreliable associations between visual features and values interfere with reward-based decision-making
- Author
-
Vickery, T., primary, Friedman, K., additional, and Bristol, R., additional
- Published
- 2014
- Full Text
- View/download PDF
9. Interference from an integral feature in visual statistical summary representations
- Author
-
Moyer, J., primary and Vickery, T., additional
- Published
- 2014
- Full Text
- View/download PDF
10. Predicting response and survival in chemotherapy-treated triple-negative breast cancer
- Author
-
Prat, A, primary, Lluch, A, additional, Albanell, J, additional, Barry, W T, additional, Fan, C, additional, Chacón, J I, additional, Parker, J S, additional, Calvo, L, additional, Plazaola, A, additional, Arcusa, A, additional, Seguí-Palmer, M A, additional, Burgues, O, additional, Ribelles, N, additional, Rodriguez-Lescure, A, additional, Guerrero, A, additional, Ruiz-Borrego, M, additional, Munarriz, B, additional, López, J A, additional, Adamo, B, additional, Cheang, M C U, additional, Li, Y, additional, Hu, Z, additional, Gulley, M L, additional, Vidal, M J, additional, Pitcher, B N, additional, Liu, M C, additional, Citron, M L, additional, Ellis, M J, additional, Mardis, E, additional, Vickery, T, additional, Hudis, C A, additional, Winer, E P, additional, Carey, L A, additional, Caballero, R, additional, Carrasco, E, additional, Martín, M, additional, Perou, C M, additional, and Alba, E, additional
- Published
- 2014
- Full Text
- View/download PDF
11. Age Dependent Changes in Corneal Epithelial Cell Signaling
- Author
-
Kristen L. Segars, Nicholas A. Azzari, Stephanie Gomez, Cody Machen, Celeste B. Rich, and Vickery Trinkaus-Randall
- Subjects
cornea ,stiffness ,live cell imaging ,cell-cell communication ,calcium mobilization ,Biology (General) ,QH301-705.5 - Abstract
The cornea is exposed daily to a number of mechanical stresses including shear stress from tear film and blinking. Over time, these stressors can lead to changes in the extracellular matrix that alter corneal stiffness, cell-substrate structures, and the integrity of cell-cell junctions. We hypothesized that changes in tissue stiffness of the cornea with age may alter calcium signaling between cells after injury, and the downstream effects of this signaling on cellular motility and wound healing. Nanoindentation studies revealed that there were significant differences in the stiffness of the corneal epithelium and stroma between corneas of 9- and 27-week mice. These changes corresponded to differences in the timeline of wound healing and in cell signaling. Corneas from 9-week mice were fully healed within 24 h. However, the wounds on corneas from 27-week mice remained incompletely healed. Furthermore, in the 27-week cohort there was no detectable calcium signaling at the wound in either apical or basal corneal epithelial cells. This is in contrast to the young cohort, where there was elevated basal cell activity relative to background levels. Cell culture experiments were performed to assess the roles of P2Y2, P2X7, and pannexin-1 in cellular motility during wound healing. Inhibition of P2Y2, P2X7, or pannexin-1 all significantly reduce wound closure. However, the inhibitors all have different effects on the trajectories of individual migrating cells. Together, these findings suggest that there are several significant differences in the stiffness and signaling that underlie the decreased wound healing efficacy of the cornea in older mice.
- Published
- 2022
- Full Text
- View/download PDF
12. Abstract P6-07-10: Luminal A vs. Basal-like Breast Cancer: time dependent changes in the risk of relapse in the absence of treatment
- Author
-
Cheang, MCU, primary, Parker, J, additional, DeSchryver, K, additional, Snider, J, additional, Walsh, T, additional, Davies, S, additional, Prat, A, additional, Vickery, T, additional, Reed, J, additional, Zehnbauer, B, additional, Leung, S, additional, Voduc, D, additional, Nielsen, T, additional, Mardis, E, additional, Bernard, P, additional, Perou, C, additional, and Ellis, M, additional
- Published
- 2012
- Full Text
- View/download PDF
13. Abstract P2-10-01: PAM50 gene signature is prognostic for breast cancer patients treated with adjuvant anthracycline and taxane based chemotherapy
- Author
-
Liu, MC, primary, Pitcher, BN, additional, Mardis, ER, additional, Davies, SR, additional, Snider, JE, additional, Vickery, T, additional, Reed, JP, additional, DeSchryver, K, additional, Singh, B, additional, Friedman, PN, additional, Gradishar, WJ, additional, Perez, EA, additional, Martino, S, additional, Citron, ML, additional, Norton, L, additional, Winer, EP, additional, Hudis, CA, additional, Perou, CM, additional, Ellis, MJ, additional, and Barry, WT, additional
- Published
- 2012
- Full Text
- View/download PDF
14. Temporally specific visual working memory representations revealed by multivoxel pattern analysis
- Author
-
Vickery, T., primary, Kuhl, B., additional, and Chun, M., additional
- Published
- 2012
- Full Text
- View/download PDF
15. P1-06-13: An Amplicon-Driven Aromatase Inhibitor Response (ADAIR) Signature Provides an Orthogonal Risk Classifier for ER+ Breast Cancer.
- Author
-
Luo, J, primary, Chang, L-W, additional, Van Tine, BA, additional, Tao, Y, additional, Hoog, J, additional, Giuntoli, T, additional, Davies, SR, additional, Snider, J, additional, Leung, S, additional, DeSchryver, K, additional, Allred, C, additional, Vickery, T, additional, Alldredge, P, additional, Mardis, E, additional, Nielsen, TO, additional, Parker, JS, additional, Prat, A, additional, Perou, CM, additional, and Ellis, MJ, additional
- Published
- 2011
- Full Text
- View/download PDF
16. Object-based warping: Distribution of distortions over an object's surface and independence of shape
- Author
-
Vickery, T., primary and Chun, M., additional
- Published
- 2011
- Full Text
- View/download PDF
17. The responsiveness of intrinsic subtypes to adjuvant anthracyclines versus nonanthracyclines in NCIC.CTG MA.5 randomized trial.
- Author
-
Cheang, M. C. U., primary, Voduc, D., additional, Tu, D., additional, Jiang, S., additional, Leung, S., additional, Chia, S. K. L., additional, Shepherd, L. E., additional, Levine, M. N., additional, Pritchard, K. I., additional, Vickery, T., additional, Davies, S., additional, Stijleman, I. J., additional, Davis, C., additional, Parker, J. S., additional, Ellis, M. J., additional, Bernard, P. S., additional, Perou, C. M., additional, and Nielsen, T. O., additional
- Published
- 2011
- Full Text
- View/download PDF
18. Basic visual representations are altered by rewards
- Author
-
Vickery, T. J., primary and Chun, M. M., additional
- Published
- 2010
- Full Text
- View/download PDF
19. Warped spatial perception within and near objects
- Author
-
Vickery, T., primary and Chun, M., additional
- Published
- 2010
- Full Text
- View/download PDF
20. Prognostic and predictive impact of biologic classification by qRT-PCR with a 50-gene subtype predictor (PAM50) for adjuvant tamoxifen in premenopausal breast cancer: Results from the NCIC CTG MA.12 randomized trial.
- Author
-
Chia, S. K., primary, Ung, K., additional, Bramwell, V. H., additional, Tu, D., additional, Perou, C. M., additional, Ellis, M. J., additional, Bernard, P. S., additional, Vickery, T., additional, Shepherd, L. E., additional, and Nielsen, T. O., additional
- Published
- 2010
- Full Text
- View/download PDF
21. Supercrowding: Weakly masking a target greatly enhances crowding
- Author
-
Vickery, T., primary, Shim, W. M., additional, Jiang, Y., additional, Chakravarthi, R., additional, and Luedeman, R., additional
- Published
- 2010
- Full Text
- View/download PDF
22. Learning of arbitrary visual associations by trial-and-error
- Author
-
Matthews, C., primary, Eng, H., additional, Vickery, T., additional, Shim, W. M., additional, and Jiang, Y., additional
- Published
- 2010
- Full Text
- View/download PDF
23. Selective attention and general attentional resources in the learning of spatial context
- Author
-
Vickery, T. J., primary, Sussman, R. S., additional, and Jiang, Y., additional
- Published
- 2010
- Full Text
- View/download PDF
24. Second-order perceptual grouping
- Author
-
Vickery, T. J., primary and Jiang, Y. V., additional
- Published
- 2010
- Full Text
- View/download PDF
25. Effects of spatial and non-spatial attentional load on posterior parietal cortex
- Author
-
Shim, W. M., primary, Alvarez, G. A., additional, Vickery, T. J., additional, and Jiang, Y., additional
- Published
- 2010
- Full Text
- View/download PDF
26. Knowledge about target category: A dissociation between categorization and search
- Author
-
Hartshorne, J., primary, Vickery, T., additional, and Jiang, Y., additional
- Published
- 2010
- Full Text
- View/download PDF
27. Keeping a straight face: configural processing and the aperture capture illusion
- Author
-
Vickery, T., primary and Gauthier, I., additional
- Published
- 2010
- Full Text
- View/download PDF
28. Attention and competitive decision making
- Author
-
Vickery, T. J., primary and Jiang, Y., additional
- Published
- 2010
- Full Text
- View/download PDF
29. Prognostic and Predictive Impact of Intrinsic Biological Classification by Immunohistochemistry (IHC) and QPCR for Adjuvant Tamoxifen in Pre-Menopausal Breast Cancer: Results from the NCIC CTG MA.12 Trial.
- Author
-
Chia, S., primary, Ung, K., additional, Bramwell, V., additional, Tu, D., additional, Perou, C., additional, Ellis, M., additional, Bernard, P., additional, Vickery, T., additional, Mardis, E., additional, Cheang, M., additional, Pritchard, K., additional, Shepherd, L., additional, and Nielsen, T., additional
- Published
- 2009
- Full Text
- View/download PDF
30. The Number of Attentional Foci and Their Precision Are Dissociated in the Posterior Parietal Cortex
- Author
-
Shim, Won Mok, primary, Alvarez, G. A., additional, Vickery, T. J., additional, and Jiang, Y. V., additional
- Published
- 2009
- Full Text
- View/download PDF
31. Supercrowding: Weakly masking a target expands the range of crowding
- Author
-
Vickery, T. J., primary, Shim, W. M., additional, Chakravarthi, R., additional, Jiang, Y. V., additional, and Luedeman, R., additional
- Published
- 2009
- Full Text
- View/download PDF
32. Inferior Parietal Lobule Supports Decision Making under Uncertainty in Humans
- Author
-
Vickery, T. J., primary and Jiang, Y. V., additional
- Published
- 2008
- Full Text
- View/download PDF
33. Integrating sequential arrays in visual short-term memory
- Author
-
Kumar, A., primary, Vickery, T. J., additional, and Jiang, Y., additional
- Published
- 2004
- Full Text
- View/download PDF
34. Perceptual set switching: How are target templates changed in visual tasks?
- Author
-
Vickery, T. J., primary and Jiang, Y., additional
- Published
- 2004
- Full Text
- View/download PDF
35. Pannexin1: Role as a Sensor to Injury Is Attenuated in Pretype 2 Corneal Diabetic Epithelium
- Author
-
Garrett Rhodes, Kristen L. Segars, Yoonjoo K. Lee, Audrey E. K. Hutcheon, Celeste B. Rich, and Vickery Trinkaus-Randall
- Subjects
Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 ,Cytology ,QH573-671 - Abstract
Epithelial wound healing is essential to repair the corneal barrier function after injury and requires coordinated epithelial sheet movement over the wounded region. The presence and role of pannexin1 on multilayered epithelial sheet migration was examined in unwounded and wounded corneal epithelium from C57BL/6J (B6) control and diet-induced obese (DiO) mice, a pretype 2 diabetic model. We hypothesize that pannexin1 is dysregulated, and the interaction of two ion-channel proteins (P2X7 and pannexin1) is altered in pretype 2 diabetic tissue. Pannexin1 was found to be present along cell borders in unwounded tissue, and no significant difference was observed between DiO and B6 control. However, an epithelial debridement induced a striking difference in pannexin1 localization. The B6 control epithelium displayed intense staining near the leading edge, which is the region where calcium mobilization was detected, whereas the staining in the DiO corneal epithelium was diffuse and lacked distinct gradation in intensity back from the leading edge. Cells distal to the wound in the DiO tissue were irregular in shape, and the morphology was similar to that of epithelium inhibited with 10Panx, a pannexin1 inhibitor. Pannexin1 inhibition reduced mobilization of calcium between cells near the leading edge, and MATLAB scripts revealed a reduction in cell-cell communication that was also detected in cultured cells. Proximity ligation was performed to determine if P2X7 and pannexin1 interaction was a necessary component of motility and communication. While there was no significant difference in the interaction in unwounded DiO and B6 control corneal epithelium, there was significantly less interaction in the wounded DiO corneas both near the wound and back from the edge. The results demonstrate that pannexin1 contributes to the healing response, and P2X7 and pannexin1 coordination may be a required component of cell-cell communication and an underlying reason for the lack of pathologic tissue migration.
- Published
- 2021
- Full Text
- View/download PDF
36. Supervised risk predictor of breast cancer based on intrinsic subtypes.
- Author
-
Parker JS, Mullins M, Cheang MC, Leung S, Voduc D, Vickery T, Davies S, Fauron C, He X, Hu Z, Quackenbush JF, Stijleman IJ, Palazzo J, Marron JS, Nobel AB, Mardis E, Nielsen TO, Ellis MJ, Perou CM, and Bernard PS
- Published
- 2009
- Full Text
- View/download PDF
37. Sustained Ca2+ mobilizations: A quantitative approach to predict their importance in cell-cell communication and wound healing.
- Author
-
Yoonjoo Lee, Min Tae Kim, Garrett Rhodes, Kelsey Sack, Sung Jun Son, Celeste B Rich, Vijaya B Kolachalama, Christopher V Gabel, and Vickery Trinkaus-Randall
- Subjects
Medicine ,Science - Abstract
Epithelial wound healing requires the coordination of cells to migrate as a unit over the basement membrane after injury. To understand the process of this coordinated movement, it is critical to study the dynamics of cell-cell communication. We developed a method to characterize the injury-induced sustained Ca2+ mobilizations that travel between cells for periods of time up to several hours. These events of communication are concentrated along the wound edge and are reduced in cells further away from the wound. Our goal was to delineate the role and contribution of these sustained mobilizations and using MATLAB analyses, we determined the probability of cell-cell communication events in both in vitro models and ex vivo organ culture models. We demonstrated that the injury response was complex and represented the activation of a number of receptors. In addition, we found that pannexin channels mediated the cell-cell communication and motility. Furthermore, the sustained Ca2+ mobilizations are associated with changes in cell morphology and motility during wound healing. The results demonstrate that both purinoreceptors and pannexins regulate the sustained Ca2+ mobilization necessary for cell-cell communication in wound healing.
- Published
- 2019
- Full Text
- View/download PDF
38. Thermal Hazard Evaluation of 4-Methoxybenzyl Chloride (PMB-Cl)
- Author
-
Brewer, S. E., Vickery, T. P., Bachert, D. C., Brands, K. M. J., Emerson, K. M., Goodyear, A., Kumke, K. J., Lam, T., and Scott, J. P.
- Abstract
Thermal stability testing of 4-methoxybenzyl chloride is described herein, from which safe storage and handling conditions have been defined.
- Published
- 2005
39. Changes in Epithelial and Stromal Corneal Stiffness Occur with Age and Obesity
- Author
-
Peiluo Xu, Anne Londregan, Celeste Rich, and Vickery Trinkaus-Randall
- Subjects
basement membrane ,confocal imaging ,nanoindenter ,pre-type 2 diabetic ,Technology ,Biology (General) ,QH301-705.5 - Abstract
The cornea is avascular, which makes it an excellent model to study matrix protein expression and tissue stiffness. The corneal epithelium adheres to the basement zone and the underlying stroma is composed of keratocytes and an extensive matrix of collagen and proteoglycans. Our goal was to examine changes in corneas of 8- and 15-week mice and compare them to 15-week pre-Type 2 diabetic obese mouse. Nanoindentation was performed on corneal epithelium in situ and then the epithelium was abraded, and the procedure repeated on the basement membrane and stroma. Confocal imaging was performed to examine the localization of proteins. Stiffness was found to be age and obesity dependent. Young’s modulus was greater in the epithelium from 15-week mice compared to 8-week mice. At 15 weeks, the epithelium of the control was significantly greater than that of the obese mice. There was a difference in the localization of Crb3 and PKCζ in the apical epithelium and a lack of lamellipodial extensions in the obese mouse. In the pre-Type 2 diabetic obese mouse there was a difference in the stiffness slope and after injury localization of fibronectin was negligible. These indicate that age and environmental changes incurred by diet alter the integrity of the tissue with age rendering it stiffer. The corneas from the pre-Type 2 diabetic obese mice were significantly softer and this may be a result of changes both in proteins on the apical surface indicating a lack of integrity and a decrease in fibronectin.
- Published
- 2020
- Full Text
- View/download PDF
40. Self-Assembled Matrix by Umbilical Cord Stem Cells
- Author
-
Biagio Saitta, Vickery Trinkaus-Randall, Ruiyi Ren, Dimitrios Karamichos, Audrey E.K. Hutcheon, Celeste B. Rich, and James D. Zieske
- Subjects
stem cells ,extracellular matrix ,cornea ,glycosaminoglycans ,Biotechnology ,TP248.13-248.65 ,Medicine (General) ,R5-920 - Abstract
Corneal integrity is critical for vision. Corneal wounds frequently heal with scarring that impairs vision. Recently, human umbilical cord mesenchymal stem cells (cord stem cells) have been investigated for tissue engineering and therapy due to their availability and differentiation potential. In this study, we used cord stem cells in a 3-dimensional (3D) stroma-like model to observe extracellular matrix organization, with human corneal fibroblasts acting as a control. For 4 weeks, the cells were stimulated with a stable Vitamin C (VitC) derivative ±TGF-b1. After 4 weeks, the mean thickness of the constructs was ~30 mm; however, cord stem cell constructs had 50% less cells per unit volume, indicating the formation of a dense matrix. We found minimal change in decorin and lumican mRNA, and a significant increase in perlecan mRNA in the presence of TGF-b1. Keratocan on the other hand decreased with TGF-b1 in both cell lineages. With both cell types, the constructs possessed aligned collagen fibrils and associated glycosaminoglycans. Fibril diameters did not change with TGF-b1 stimulation or cell lineage; however, highly sulfated glycosaminoglycans associated with the collagen fibrils significantly increased with TGF-b1. Overall, we have shown that cord stem cells can secrete their own extracellular matrix and promote the deposition and sulfation of various proteoglycans. Furthermore, these cells are at least comparable to commonly used corneal fibroblasts and present an alternative for the 3D in vitro tissue engineered model.
- Published
- 2011
- Full Text
- View/download PDF
41. Predicting response and survival in chemotherapy-treated triple-negative breast cancer
- Author
-
Rodriguez-Lescure, A., Caballero, R., Parker, J. S., Seguí-Palmer, M. A., Fan, C., Martín, M., Lluch, A., Munarriz, B., Arcusa, A., Cheang, M. C.U., López, J. A., Prat, A., Liu, M. C., Guerrero, A., Plazaola, A., Calvo, L., Winer, E. P., Barry, W. T., Burgues, O., Carrasco, E., Chacón, J. I., Hudis, C. A., Citron, M. L., Ribelles, N., Hu, Z., Albanell, J., Carey, L. A., Mardis, E., Li, Y., Adamo, B., Pitcher, B. N., Gulley, M. L., Vidal, M. J., Ellis, M. J., Ruiz-Borrego, M., Alba, E., Vickery, T., and Perou, C. M.
- Subjects
3. Good health - Abstract
Background:In this study, we evaluated the ability of gene expression profiles to predict chemotherapy response and survival in triple-negative breast cancer (TNBC).Methods:Gene expression and clinical–pathological data were evaluated in five independent cohorts, including three randomised clinical trials for a total of 1055 patients with TNBC, basal-like disease (BLBC) or both. Previously defined intrinsic molecular subtype and a proliferation signature were determined and tested. Each signature was tested using multivariable logistic regression models (for pCR (pathological complete response)) and Cox models (for survival). Within TNBC, interactions between each signature and the basal-like subtype (vs other subtypes) for predicting either pCR or survival were investigated.Results:Within TNBC, all intrinsic subtypes were identified but BLBC predominated (55–81%). Significant associations between genomic signatures and response and survival after chemotherapy were only identified within BLBC and not within TNBC as a whole. In particular, high expression of a previously identified proliferation signature, or low expression of the luminal A signature, was found independently associated with pCR and improved survival following chemotherapy across different cohorts. Significant interaction tests were only obtained between each signature and the BLBC subtype for prediction of chemotherapy response or survival.Conclusions:The proliferation signature predicts response and improved survival after chemotherapy, but only within BLBC. This highlights the clinical implications of TNBC heterogeneity, and suggests that future clinical trials focused on this phenotypic subtype should consider stratifying patients as having BLBC or not.
42. Communication between corneal epithelial cells and trigeminal neurons is facilitated by purinergic (P2) and glutamatergic receptors.
- Author
-
Duane J Oswald, Albert Lee, Monique Trinidad, Cheryl Chi, Ruiyi Ren, Celeste B Rich, and Vickery Trinkaus-Randall
- Subjects
Medicine ,Science - Abstract
Previously, we demonstrated that nucleotides released upon mechanical injury to corneal epithelium activate purinergic (P2) receptors resulting in mobilization of a Ca(2+) wave. However, the tissue is extensively innervated and communication between epithelium and neurons is critical and not well understood. Therefore, we developed a co-culture of primary trigeminal neurons and human corneal limbal epithelial cells. We demonstrated that trigeminal neurons expressed a repertoire of P2Yand P2X receptor transcripts and responded to P2 agonists in a concentration-dependent manner. Mechanical injuries to epithelia in the co-cultures elicited a Ca(2+) wave that mobilized to neurons and was attenuated by Apyrase, an ectonucleotidase. To elucidate the role of factors released from each cell type, epithelial and neuronal cells were cultured, injured, and the wound media from one cell type was collected and added to the other cell type. Epithelial wound media generated a rapid Ca(2+) mobilization in neuronal cells that was abrogated in the presence of Apyrase, while neuronal wound media elicited a complex response in epithelial cells. The rapid Ca(2+) mobilization was detected, which was abrogated with Apyrase, but it was followed by Ca(2+) waves that occurred in cell clusters. When neuronal wound media was preincubated with a cocktail of N-methyl-D-aspartate (NMDA) receptor inhibitors, the secondary response in epithelia was diminished. Glutamate was detected in the neuronal wound media and epithelial expression of NMDA receptor subunit transcripts was demonstrated. Our results indicate that corneal epithelia and neurons communicate via purinergic and NMDA receptors that mediate the wound response in a highly orchestrated manner.
- Published
- 2012
- Full Text
- View/download PDF
43. Corneal epithelium expresses a variant of P2X(7) receptor in health and disease.
- Author
-
Courtney Mankus, Celeste Rich, Martin Minns, and Vickery Trinkaus-Randall
- Subjects
Medicine ,Science - Abstract
Improper wound repair of the corneal epithelium can alter refraction of light resulting in impaired vision. We have shown that ATP is released after injury, activates purinergic receptor signaling pathways and plays a major role in wound closure. In many cells or tissues, ATP activates P2X(7) receptors leading to cation fluxes and cytotoxicity. The corneal epithelium is an excellent model to study the expression of both the full-length P2X(7) form (defined as the canonical receptor) and its truncated forms. When Ca(2+) mobilization is induced by BzATP, a P2X(7) agonist, it is attenuated in the presence of extracellular Mg(2+) or Zn(2+), negligible in the absence of extracellular Ca(2+), and inhibited by the competitive P2X7 receptor inhibitor, A438079. BzATP enhanced phosphorylation of ERK. Together these responses indicate the presence of a canonical or full-length P2X(7) receptor. In addition BzATP enhanced epithelial cell migration, and transfection with siRNA to the P2X(7) receptor reduced cell migration. Furthermore, sustained activation did not induce dye uptake indicating the presence of truncated or variant forms that lack the ability to form large pores. Reverse transcription-polymerase chain reaction and Northern blot analysis revealed a P2X(7) splice variant. Western blots identified a full-length and truncated form, and the expression pattern changed as cultures progressed from monolayer to stratified. Cross-linking gels demonstrated the presence of homo- and heterotrimers. We examined epithelium from age matched diabetic and non-diabetic corneas patients and detected a 4-fold increase in P2X(7) mRNA from diabetic corneal epithelium compared to non-diabetic controls and an increased trend in expression of P2X(7)variant mRNA. Taken together, these data indicate that corneal epithelial cells express full-length and truncated forms of P2X(7), which ultimately allows P2X(7) to function as a multifaceted receptor that can mediate cell proliferation and migration or cell death.
- Published
- 2011
- Full Text
- View/download PDF
44. Predicting response and survival in chemotherapy-treated triple-negative breast cancer
- Author
-
Lourdes Calvo, Brandy Pitcher, Chun-Yang Fan, Álvaro Rodríguez-Lescure, Lisa A. Carey, Blanca Munárriz, William T. Barry, Eric P. Winer, Eva Carrasco, Marc L. Citron, Aleix Prat, Nuria Ribelles, Maggie C.U. Cheang, Elaine R. Mardis, MC Liu, Manuel Ruiz-Borrego, Jose Ignacio Chacon, A. Arcusa, Rafael Caballero, Joan Albanell, E. Alba, Tammi L. Vickery, Matthew J. Ellis, Joel S. Parker, A. Lluch, Clifford A. Hudis, Yufeng Li, Miguel Angel Seguí-Palmer, Ángel L Guerrero, Barbara Adamo, Arrate Plazaola, Margaret L. Gulley, Miguel Martin, Octavio Burgues, José A. López, Maria Vidal, Zhiyuan Hu, Charles M. Perou, Universitat de Barcelona, [Prat,A, Adamo,B, Vidal,M.J] Translational Genomics Group, Vall D'Hebron Institute of Oncology (VHIO) Barcelona, Spain. [Prat,A] Department of Medicine, Universitat Autònoma de Barcelona, Spain. [Lluch,A, Burgues,O] Department of Medical Oncology, Department of Pathology, Hospital Clínico Universitario de Valencia, Spain. [Albanell,J] Department of Medical Oncology, Hospital Del Mar, IMIM, Barcelona, Spain. [Albanell,J] Department of Medical Oncology, Universitat Pompeu Fabra (UPF), Barcelona, Spain. [Barry,W.T] Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA, United States. [Fan,C, Parker,J.S, Cheang,M.C.U, Li,Y, Hu,Z, Gulley,M.L, Carey,L.A, Perou,C.M] Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, United States. [Chacón,J.I] Department of Medical Oncology, Hospital Virgen de la Salud, Toledo, Spain. [Parker,J.S, Perou,C.M] Department of Genetics, University of North Carolina, Chapel Hill, NC, United States. [Calvo,L] Department of Medical Oncology, Complexo Hospitalario Universitario de A Coruña, A Coruña, Spain. [Plazaola,A] Department of Medical Oncology, Onkologikoa, San-Sebastián, Spain. [Arcusa,A] Department of Medical Oncology, Consorci Sanitari de Terrassa, Barcelona, Spain. [Seguí-Palmer,M.A] Department of Medical Oncology, Corporació Sanitària Parc Taulí, Sabadell, Spain. [Ribelles,N, Alba,E] Department of Medical Oncology, Department of Pathology, Hospital Universitario Virgen de la Victoria, Málaga, Spain. [Rodríguez-Lescure,A] Department of Medical Oncology, Hospital General de Elche, Alicante, Spain. [Guerrero,A] Department of Medical Oncology, Instituto Valenciano de Oncología (IVO), Valencia, Spain. [Ruiz-Borrego,M] Department of Medical Oncology, Hospital Universitario Virgen Del Rocío, Sevilla, Spain. [Munarriz,B] Department of Medical Oncology, Hospital Universitario la Fe, Valencia, Spain. [López,J.A] Department of Medical Oncology, Hospital San Camilo, Madrid, Spain.[Pitcher,B.N] Alliance Statistical and Data Center, Duke University, Durham, NC, United States. [Liu,M.C] Department of Oncology, Mayo Clinic, Rochester, MN, United States. [Citron,M.L] ProHEALTH Care Assoc., LLP, Lake Success, NY, United States. [Ellis,M.J, Mardis,E, Vickery,T] Department of Oncology, Washington University St. Louis, MO, United States. [Hudis,C.A] Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, United States. [Winer,E.P] Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, United States. [Caballero,R, Carrasco,E, Martín,M] GEICAM (Spanish Breast Cancer Research Group), Madrid, Spain. [Martín,M] Department of Medical Oncology, Instituto de Investigación Sanitaria, Hospital Universitario Gregorio Marañón, Madrid, Spain. [Perou,C.M] Department of Pathology and Laboratory Medicine, University of North Carolina, Chapel Hill, NC, United States., and This work was supported by funds from the NCI Breast SPORE program Grant No. P50-CA58223-09A1 (CMP), by RO1-CA138255 (CMP), by the Breast Cancer Research Foundation (CMP and MJE), National Cancer Institute (NCI) Strategic Partnering to Evaluate Cancer Signatures Grant No. U01 CA114722-01 (MJE), by the Sociedad Española de Oncología Médica (AP), by FEDER (RETICC-RD12/0036/0051, RD12/0036/0042, RD12/0036/0076, RD12/0036/0070), by Instituto de Salud Carlos III—PI13/01718 (AP), by Banco Bilbao Vizcaya Argentaria (BBVA) Foundation (AP) and by the Alliance Statistics and Data Center (U10-CA33601).
- Subjects
Oncology ,Cancer Research ,Análisis de supervivencia ,Colorectal cancer ,Triple Negative Breast Neoplasms ,Named Groups::Persons::Age Groups::Adult::Middle Aged [Medical Subject Headings] ,chemotherapy ,Organisms::Eukaryota::Animals::Chordata::Vertebrates::Mammals::Primates::Haplorhini::Catarrhini::Hominidae::Humans [Medical Subject Headings] ,Cohort Studies ,Prostate cancer ,0302 clinical medicine ,Clinical trials ,Breast cancer ,Quimioteràpia ,Triple-negative breast cancer ,Subtypes ,0303 health sciences ,Health Care::Health Care Quality, Access, and Evaluation::Quality of Health Care::Health Care Evaluation Mechanisms::Statistics as Topic::Survival Analysis [Medical Subject Headings] ,subtypes ,Genomics ,Middle Aged ,3. Good health ,Treatment Outcome ,Estudi de casos ,030220 oncology & carcinogenesis ,Female ,Neoadjuvant ,Basal like ,intrinsic ,medicine.medical_specialty ,Antineoplastic Agents ,basal like ,Càncer de mama ,03 medical and health sciences ,breast cancer ,Internal medicine ,genomics ,medicine ,Humans ,Chemotherapy ,Lung cancer ,Diseases::Neoplasms::Neoplasms by Site::Breast Neoplasms [Medical Subject Headings] ,Survival analysis ,030304 developmental biology ,Proportional hazards model ,business.industry ,neoadjuvant ,Chemicals and Drugs::Chemical Actions and Uses::Pharmacologic Actions::Therapeutic Uses::Antineoplastic Agents [Medical Subject Headings] ,Neoplasias de la mama triple negativas ,Antineoplásicos ,medicine.disease ,Survival Analysis ,Expressió gènica ,Intrisic ,Check Tags::Female [Medical Subject Headings] ,Intrinsic ,Analytical, Diagnostic and Therapeutic Techniques and Equipment::Investigative Techniques::Epidemiologic Methods::Epidemiologic Study Characteristics as Topic::Epidemiologic Studies::Cohort Studies [Medical Subject Headings] ,Clinical Study ,Gene expression ,Case studies ,Resultado del tratamiento ,Health Care::Health Services Administration::Quality of Health Care::Outcome and Process Assessment (Health Care)::Outcome Assessment (Health Care)::Treatment Outcome [Medical Subject Headings] ,Skin cancer ,business ,Assaigs clínics - Abstract
This work was presented, in part, as an oral communication at the ASCO 2012 annual meeting (Abstract #10500). Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; BACKGROUND In this study, we evaluated the ability of gene expression profiles to predict chemotherapy response and survival in triple-negative breast cancer (TNBC). METHODS Gene expression and clinical-pathological data were evaluated in five independent cohorts, including three randomised clinical trials for a total of 1055 patients with TNBC, basal-like disease (BLBC) or both. Previously defined intrinsic molecular subtype and a proliferation signature were determined and tested. Each signature was tested using multivariable logistic regression models (for pCR (pathological complete response)) and Cox models (for survival). Within TNBC, interactions between each signature and the basal-like subtype (vs other subtypes) for predicting either pCR or survival were investigated. RESULTS Within TNBC, all intrinsic subtypes were identified but BLBC predominated (55-81%). Significant associations between genomic signatures and response and survival after chemotherapy were only identified within BLBC and not within TNBC as a whole. In particular, high expression of a previously identified proliferation signature, or low expression of the luminal A signature, was found independently associated with pCR and improved survival following chemotherapy across different cohorts. Significant interaction tests were only obtained between each signature and the BLBC subtype for prediction of chemotherapy response or survival. CONCLUSIONS The proliferation signature predicts response and improved survival after chemotherapy, but only within BLBC. This highlights the clinical implications of TNBC heterogeneity, and suggests that future clinical trials focused on this phenotypic subtype should consider stratifying patients as having BLBC or not. Yes
- Published
- 2014
45. Somatic mutations affect key pathways in lung adenocarcinoma
- Author
-
Aldi T. Kraja, Brian H. Dunford-Shore, Tittu Mathew, Otis Hall, Barbara A. Weir, Timothy Fennell, William Pao, Jack A. Roth, Alicia Hawes, Heidi Greulich, Steven E. Scherer, Xiaoqi Shi, Giovanni Tonon, Manuel L. Gonzalez-Garay, Yuzhu Tang, Mark B. Orringer, Qunyuan Zhang, Bruce E. Johnson, Li Ding, David G. Beer, Amit Dutt, Margaret R. Spitz, Carrie A. Haipek, Michael A. Province, Yiming Zhu, Liuda Ziaugra, Lucian R. Chirieac, Ken Chen, Rachel Abbott, William D. Travis, George M. Weinstock, Harold E. Varmus, Lucinda Fulton, Daniel C. Koboldt, Kristian Cibulskis, Carrie Sougnez, Christopher S. Sawyer, Richard A. Gibbs, Bradley A. Ozenberger, Thomas J. Giordano, Heather Schmidt, Ling Lin, Jennifer Baldwin, Elaine R. Mardis, Rick Meyer, Tracie L. Miner, David E. Larson, Ignacio I. Wistuba, Jiqiang Yao, Margaret Morgan, Andrew C. Chang, Akihiko Yoshizawa, Shalini N. Jhangiani, Xiaojun Zhao, David A. Wheeler, Stephen R. Broderick, Jody S. Robinson, Kerstin Clerc, Eric S. Lander, Richard K. Wilson, Ginger A. Fewell, Hua Shen, David J. Dooling, Robert S. Fulton, Aleksandar Milosavljevic, John R. Osborne, Gad Getz, Donna M. Muzny, Yanru Ren, Wendy Winckler, Roman K. Thomas, Mark A. Watson, Peter J. Good, Sacha N. Sander, Megan Hanna, Michael D. McLellan, Ginger A. Metcalf, Brian Ng, Michael C. Wendl, Lora Lewis, Seth D. Crosby, Michael C. Zody, Matthew Meyerson, Robert C. Onofrio, Michael S. Lawrence, Marc Ladanyi, Aniko Sabo, Craig Pohl, Stacey Gabriel, Tammi L. Vickery, Ding, L, Getz, G, Wheeler, Da, Mardis, Ea, Mclellan, Md, Cibulskis, K, Sougnez, C, Greulich, H, Muzny, Dm, Morgan, Mb, Fulton, L, Fulton, R, Zhang, Q, Wendl, Mc, Lawrence, M, Larson, De, Chen, K, Dooling, Dj, Sabo, A, Hawes, Ac, Shen, H, Jhangiani, Sh, Lewis, Lr, Hall, O, Zhu, Y, Mathew, T, Ren, Y, Yao, J, Scherer, Se, Clerc, K, Metcalf, Ga, Ng, B, Milosavljevic, A, Gonzalez-Garay, Ml, Osborne, Jr, Meyer, R, Shi, X, Tang, Y, Koboldt, Dc, Lin, L, Abbott, R, Miner, Tl, Pohl, C, Fewell, G, Haipek, C, Schmidt, H, Dunford-Shore, Bh, Kraja, A, Crosby, Sd, Sawyer, C, Vickery, T, Sander, S, Robinson, J, Winckler, W, Baldwin, J, Chirieac, Lr, Dutt, A, Fennell, T, Hanna, M, Johnson, Be, Onofrio, Rc, Thomas, Rk, Tonon, G, Weir, Ba, Zhao, X, Ziaugra, L, Zody, Mc, Giordano, T, Orringer, Mb, Roth, Ja, Spitz, Mr, Wistuba, Ii, Ozenberger, B, Good, Pj, Chang, Ac, Beer, Dg, Watson, Ma, Ladanyi, M, Broderick, S, Yoshizawa, A, Travis, Wd, Pao, W, Province, Ma, Weinstock, Gm, Varmus, He, Gabriel, Sb, Lander, E, Gibbs, Ra, Meyerson, M, and Wilson, Rk.
- Subjects
Male ,Genetics ,Mutation ,Lung Neoplasms ,Multidisciplinary ,Tumor suppressor gene ,DNA repair ,Gene Dosage ,Adenocarcinoma, Bronchiolo-Alveolar ,Biology ,medicine.disease ,medicine.disease_cause ,Article ,Gene Expression Regulation, Neoplastic ,Germline mutation ,Proto-Oncogenes ,medicine ,Humans ,Adenocarcinoma ,Female ,Genes, Tumor Suppressor ,Carcinogenesis ,Lung cancer ,Gene - Abstract
Determining the genetic basis of cancer requires comprehensive analyses of large collections of histopathologically well-classified primary tumours. Here we report the results of a collaborative study to discover somatic mutations in 188 human lung adenocarcinomas. DNA sequencing of 623 genes with known or potential relationships to cancer revealed more than 1,000 somatic mutations across the samples. Our analysis identified 26 genes that are mutated at significantly high frequencies and thus are probably involved in carcinogenesis. The frequently mutated genes include tyrosine kinases, among them the EGFR homologue ERBB4; multiple ephrin receptor genes, notably EPHA3; vascular endothelial growth factor receptor KDR; and NTRK genes. These data provide evidence of somatic mutations in primary lung adenocarcinoma for several tumour suppressor genes involved in other cancers--including NF1, APC, RB1 and ATM--and for sequence changes in PTPRD as well as the frequently deleted gene LRP1B. The observed mutational profiles correlate with clinical features, smoking status and DNA repair defects. These results are reinforced by data integration including single nucleotide polymorphism array and gene expression array. Our findings shed further light on several important signalling pathways involved in lung adenocarcinoma, and suggest new molecular targets for treatment.
- Published
- 2008
46. Luminal A vs. Basal-like Breast Cancer: time dependent changes in the risk of relapse in the absence of treatment.
- Author
-
Cheang, M. C. U., Parker, J., DeSchryver, K., Snider, J., Walsh, T., Davies, S., Prat, A., Vickery, T., Reed, J., Zehnbauer, B., Leung, S., Voduc, D., Nielsen, T., Mardis, E., Bernard, P., Perou, C., and Ellis, M.
- Subjects
- *
CLINICAL trials , *TAMOXIFEN , *DRUG therapy , *BREAST cancer , *CANCER - Abstract
Background: Numerous retrospective analyses of prospective randomized clinical trials of patients treated with adjuvant tamoxifen and chemotherapy have demonstrated that the breast cancer intrinsic subtype Luminal A tumors generally have favorable early initial outcomes, while basal-like tumors are associated with a marked risk of early relapse. To determine the extended natural history of the intrinsic subtypes across two decades of follow up the PAM50 "non-commercial open source bioinformatics" qPCR assay was conducted on node negative tumors accrued through the Cooperative Breast Cancer Tissue Registry (CBCTR) from patients who did not receive systemic therapy. Methods: Intrinsic subtype calls were obtained from 331 CBCTR cases treated with local interventions only. Tumors were classified into Luminal A (LumA), Luminal B (LumB), HER2-enriched (HER2-E) and Basal-like (BLBC), and correlated relapse-free (RFS). Patient survival and hazard rate were estimated using Kaplan-Meier plots and log-rank test. Multivariable Cox regression analyses were used to determine the significance of the intrinsic subtypes, adjusted with standard clinicopathological variables including tumor size, age at diagnosis, grade, radiation therapy treatment, centralized reviewed estrogen receptor, progesterone receptor and human epidermal growth factor 2 status measured by immunohistochemistry. Patients were diagnosed from 1978 to 1992, with a mean follow-up time of 13 years (range 0.5-31). Results: Of the 331 tumors tested, 51% of cases were classified as LumA, 18% as LumB, 11 % as HER2-E and 20% as BLBC. Although LumA was associated with the best outcome for the first 10-year of follow-up, the final number of RFS events were eventually comparable with those observed for BLBC with prolonged follow up (Table 1). In the multivariable Cox model, only BLBC tumors were associated with worse prognosis than LumA with borderline significance (Hazard ratio: 2.0 (95% Cl 0.9-5), p = 0.07). BLBC had the highest hazard rates for the first 5 years (7% at first year to 5% at 5 yr), consistent with previous observations. Interestingly, in the absence of treatment, the slow growing LumA subtype had a gradual increase of hazard for an RFS event from 3% at 5 yrs to 4% at 10 yrs to 7% at 20 yrs. The hazard rates of LumA cross with those of BLBC at 10 years. Conclusions: Basal-like breast cancers are associated with an early risk of relapse that decreases over time. In contrast, Luminal A breast cancer has a low risk of relapse at the outset but the risk of relapse increases over time and is responsible of the majority of the RFS events after 20 years of follow up. Luminal A breast cancers are therefore not truly low risk, particularly if they do not receive endocrine therapy; and may experience the consequences of inadequate treatment decades after diagnosis. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
47. PAM50 gene signature is prognostic for breast cancer patients treated with adjuvant anthracycline and taxane based chemotherapy.
- Author
-
Liu, M. C., Pitcher, B. N., Mardis, E. R., Davies, S. R., Snider, J. E., Vickery, T., Reed, J. P., DeSchryver, K., Singh, B., Friedman, P. N., Gradishar, W. J., Perez, E. A., Martino, S., Citron, M. L., Norton, L., Winer, E. P., Hudis, C. A., Perou, C. M., Ellis, M. J., and Barry, W. T.
- Subjects
- *
BREAST cancer research , *CANCER chemotherapy , *DOXORUBICIN , *CYCLOPHOSPHAMIDE , *PACLITAXEL - Abstract
Background: Intrinsic breast cancer subtypes determined by the PAM50 assay are reported to be prognostic independent of standard clinicopathological variables. The CALGB (Alliance) 9741 adjuvant trial randomized treatment in a 2x2 factorial design to (i) 2-wk (dose dense; DD) vs 3-wk therapy and (ii) sequential vs concurrent doxorubicin, cyclophosphamide, paclitaxel (A>T>C vs AC>T). DD therapy improved disease-free survival and overall survival (OS) (Citron et al. JCO 2003.). A significant interaction between intrinsic breast cancer subtypes and the use of DD therapy was hypothesized. Methods: C9741 was conducted in collaboration with ECOG, NCCTG, and SWOG. Biospecimens were collected from 1652 of 2005 subjects. Multiplexed gene expression profiling (NanoString Technologies, Inc) generated PAM50 subtype calls (luminal A, luminal B, HER2-enriched, basal-like), risk of relapse (ROR) score, and proliferation score for 1321 cases (80%). Excluded samples were due to insufficient tumor (n = 181) or RNA (n = 150). The primary endpoint was relapse-free survival (RFS). The primary analysis to determine if the clinical benefit of DD therapy is dependent on intrinsic subtype was conducted as a test of interaction in a Cox proportional hazards model (3 degrees of freedom, df; alpha=0.05). Similar analyses were performed for ROR score and proliferation score as continuous measures of risk (1 df). PAM50 subtype, ROR score, and proliferation score were evaluated in separate multivariate models adjusting for number of positive nodes, menopausal status, dose density, and sequence of therapy. Results: Improved outcomes for DD therapy in the evaluable subset mirrored results from the complete dataset (HR = 1.20; 95%CI 0.99-1.44) with a median follow-up of 12.3 yrs. Subtype analysis identified 32% luminal A (n = 417), 26% luminal B (n = 341), 20% HER2-enriched (n = 267), and 22% basal-like (n = 296). Intrinsic subtypes were prognostic of RFS (p < 0.0001) irrespective of treatment assignment with HRs relative to the luminal A subgroup of 1.50 (luminal B), 1.70 (HER2-enriched) and 1.66 (basal-like). No subtype specific treatment effect on RFS was identified (p = 0.44). ROR scores (range 0-100, median 60) were also prognostic of RFS (HR = 1.12 for a 10-unit change; 95% CI 1.07-1.18; p < 0.0001), but no association with DD therapy benefit was seen (p = 0.58). Similar results were obtained for the proliferation score, for OS as a secondary endpoint, and from multivariate models with clinical covariates. Conclusion: The prognostic value of PAM50 subtype, ROR score, and proliferation score remains highly significant in patients treated with contemporary adjuvant anthracycline and taxane based chemotherapy. Intrinsic subtype did not predict for improved survival with the 2- wk DD vs 3-wk treatment schedule; we hypothesize that this is because the prognostic differences by subtype outweighed the modest but significant clinical benefit of DD chemotherapy administration for the overall population. Planned clinical validation studies will assess the ability of PAM50 and other gene signatures to stratify patients and individualize systemic therapy regimens based on the expected risk of distant recurrence. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
48. Neoantigen DNA vaccines are safe, feasible, and induce neoantigen-specific immune responses in triple-negative breast cancer patients.
- Author
-
Zhang X, Goedegebuure SP, Chen MY, Mishra R, Zhang F, Yu YY, Singhal K, Li L, Gao F, Myers NB, Vickery T, Hundal J, McLellan MD, Sturmoski MA, Kim SW, Chen I, Davidson JT 4th, Sankpal NV, Myles S, Suresh R, Ma CX, Foluso A, Wang-Gillam A, Davies S, Hagemann IS, Mardis ER, Griffith O, Griffith M, Miller CA, Hansen TH, Fleming TP, Schreiber RD, and Gillanders WE
- Subjects
- Humans, Female, Middle Aged, Adult, Aged, Vaccines, DNA immunology, Antigens, Neoplasm immunology, Antigens, Neoplasm genetics, Triple Negative Breast Neoplasms immunology, Cancer Vaccines immunology, Cancer Vaccines therapeutic use, Cancer Vaccines adverse effects
- Abstract
Background: Neoantigen vaccines can induce or enhance highly specific antitumor immune responses with minimal risk of autoimmunity. We have developed a neoantigen DNA vaccine platform capable of efficiently presenting both HLA class I and II epitopes and performed a phase 1 clinical trial in triple-negative breast cancer patients with persistent disease on surgical pathology following neoadjuvant chemotherapy, a patient population at high risk of disease recurrence., Methods: Expressed somatic mutations were identified by tumor/normal exome sequencing and tumor RNA sequencing. The pVACtools software suite of neoantigen prediction algorithms was used to identify and prioritize cancer neoantigens and facilitate vaccine design for manufacture in an academic GMP facility. Neoantigen DNA vaccines were administered via electroporation in the adjuvant setting (i.e., following surgical removal of the primary tumor and completion of standard of care therapy). Vaccines were monitored for safety and immune responses via ELISpot, intracellular cytokine production via flow cytometry, and TCR sequencing., Results: Eighteen subjects received three doses of a neoantigen DNA vaccine encoding on average 11 neoantigens per patient (range 4-20). The vaccinations were well tolerated with relatively few adverse events. Neoantigen-specific T cell responses were induced in 14/18 patients as measured by ELISpot and flow cytometry. At a median follow-up of 36 months, recurrence-free survival was 87.5% (95% CI: 72.7-100%) in the cohort of vaccinated patients., Conclusion: Our study demonstrates neoantigen DNA vaccines are safe, feasible, and capable of inducing neoantigen-specific immune responses., Clinical Trial Registration Number: NCT02348320., Competing Interests: Declarations Ethics approval and consent to participate The clinical protocol was reviewed and approved by the Institutional Review Board (ID# 201505074) at Washington University School of Medicine. The research conformed to the principles of the Helsinki/Tokyo/Venice Declaration on experimentation in humans. Consent for publication Written consent for publication was obtained from all participating patients. Competing interests K.S., M.G., and O.G. are consultants for the Jaime Leandro Foundation. All other authors declare that they have no competing interests., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
49. Emergency department physiotherapists: consideration of perceived barriers and facilitators to help optimise their role in the Australian emergency department.
- Author
-
Vickery T, Brett L, and Jones T
- Abstract
Questions: What are the current barriers and facilitators to the role of ED physiotherapists? How do ED physiotherapists believe their role may be optimised within the context of the ED?, Design: Mixed methods study using a cross sectional survey., Participants: Australian physiotherapists currently providing services to patients within an Australian emergency department., Intervention: N/A., Outcome Measures: The survey included questions related to the level of integration of ED physiotherapy into emergency department teams and wider health system, and open answer questions to identify the factors which impact and influence ED physiotherapy practice, and the future of ED physiotherapy., Results: 1 - Organisational culture, 2 - training and credentialling, 3 - governance, legislation and policies, 4 - funding, and 5 - advocacy and research were the five major themes generated from participant comments on existing facilitators and barriers to their role and the role of ED physiotherapists nationally. Six themes were generated from participant comments regarding the strategies to overcome barriers and facilitate an increased contribution by ED physiotherapists in the future: 1 - Training opportunities and specialisation pathways, 2 - Organisational culture, 3 - Governance, legislation and policies, 4 - Funding, 5 - Advocacy, 6 - Medicolegal Risks., Conclusion: Australian emergency department physiotherapists perceive their roles and emergency physiotherapy service provision to be impacted by complex and multi-factorial influences. The overall contribution of ED physiotherapy is susceptible to influence from non-linear interactions of various agents and factors which span all levels of the health system., Trial Registration: N/A., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
50. Demographics and scope of Australian emergency department physiotherapists.
- Author
-
Vickery T, Brett L, and Jones T
- Abstract
Questions: To provide workforce data on the status of Australian Emergency Department (ED) physiotherapy practice, including physiotherapist demographic data, staffing levels and funding sources. Evaluate the scope of practice currently undertaken by ED physiotherapists and alignment of ED physiotherapy service provision with demand levels., Design: Cross sectional survey., Participants: Australian physiotherapists working within an Australian ED., Outcome Measures: Workforce data, scope of practice and alignment of physiotherapy service provision to ED presentations and demand., Results: 94 Australian ED physiotherapists completed the survey, 76.9% were working as primary contact clinicians. They had a diverse scope of practice, 100% perform mobility assessments, 89.9% provide care for paediatric patients and 10.1% were involved in administration of medications. 86.2% of participants (75/87) reported working within a service model that provided seven-day per week physiotherapy coverage to ED., Conclusion: The sample of ED physiotherapists were found to be experienced and highly trained clinicians with a diverse scope of practice, who are well placed to meet the unpredictable and highly variable patient caseload of Australian EDs., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.