37 results on '"Veronica E Klepeis"'
Search Results
2. Pyelonephritis is an Underrecognized Cause of CKD in Patients With Orthotopic Ileal Neobladder Substitution
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Qiyu Wang, Rituvanthikaa Seethapathy, Tianqi Ouyang, Ian A. Strohbehn, Nurit Katz-Agranov, Paul Hanna, Mohit Madken, Harish Seethapathy, Shruti Gupta, Howard M. Heller, Matthew Wszolek, David Steele, Veronica E. Klepeis, Helmut Rennke, and Meghan E. Sise
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asymptomatic bacteriuria ,bladder cancer ,chronic kidney disease ,ileal neobladder ,pyelonephritis ,urinary diversion ,Diseases of the genitourinary system. Urology ,RC870-923 - Published
- 2023
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3. The 2013 symposium on pathology data integration and clinical decision support and the current state of field
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Jason M Baron, Anand S Dighe, Ramy Arnaout, Ulysses J Balis, W Stephen Black-Schaffer, Alexis B Carter, Walter H Henricks, John M Higgins, Brian R Jackson, JiYeon Kim, Veronica E Klepeis, Long P Le, David N Louis, Diana Mandelker, Craig H Mermel, James S Michaelson, Rakesh Nagarajan, Mihae E Platt, Andrew M Quinn, Luigi Rao, Brian H Shirts, and John R Gilbertson
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Clinical decision support, genomics, interpretive reporting, machine learning, test utilization ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Pathology ,RB1-214 - Abstract
Background: Pathologists and informaticians are becoming increasingly interested in electronic clinical decision support for pathology, laboratory medicine and clinical diagnosis. Improved decision support may optimize laboratory test selection, improve test result interpretation and permit the extraction of enhanced diagnostic information from existing laboratory data. Nonetheless, the field of pathology decision support is still developing. To facilitate the exchange of ideas and preliminary studies, we convened a symposium entitled: Pathology data integration and clinical decision support. Methods: The symposium was held at the Massachusetts General Hospital, on May 10, 2013. Participants were selected to represent diverse backgrounds and interests and were from nine different institutions in eight different states. Results: The day included 16 plenary talks and three panel discussions, together covering four broad areas. Summaries of each presentation are included in this manuscript. Conclusions: A number of recurrent themes emerged from the symposium. Among the most pervasive was the dichotomy between diagnostic data and diagnostic information, including the opportunities that laboratories may have to use electronic systems and algorithms to convert the data they generate into more useful information. Differences between human talents and computer abilities were described; well-designed symbioses between humans and computers may ultimately optimize diagnosis. Another key theme related to the unique needs and challenges in providing decision support for genomics and other emerging diagnostic modalities. Finally, many talks relayed how the barriers to bringing decision support toward reality are primarily personnel, political, infrastructural and administrative challenges rather than technological limitations.
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- 2014
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4. The ongoing evolution of the core curriculum of a clinical fellowship in pathology informatics
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Andrew M Quinn, Veronica E Klepeis, Diana L Mandelker, Mia Y Platt, Luigi K F Rao, Gregory Riedlinger, Jason M Baron, Victor Brodsky, Ji Yeon Kim, William Lane, Roy E Lee, Bruce P Levy, David S McClintock, Bruce A Beckwith, Frank C Kuo, and John R Gilbertson
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Clinical informatics curriculum, clinical informatics teaching, pathology informatics, pathology informatics curriculum, pathology informatics teaching ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Pathology ,RB1-214 - Abstract
The Partners HealthCare system′s Clinical Fellowship in Pathology Informatics (Boston, MA, USA) faces ongoing challenges to the delivery of its core curriculum in the forms of: (1) New classes of fellows annually with new and varying educational needs and increasingly fractured, enterprise-wide commitments; (2) taxing electronic health record (EHR) and laboratory information system (LIS) implementations; and (3) increasing interest in the subspecialty at the academic medical centers (AMCs) in what is a large health care network. In response to these challenges, the fellowship has modified its existing didactic sessions and piloted both a network-wide pathology informatics lecture series and regular "learning laboratories". Didactic sessions, which had previously included more formal discussions of the four divisions of the core curriculum: Information fundamentals, information systems, workflow and process, and governance and management, now focus on group discussions concerning the fellows′ ongoing projects, updates on the enterprise-wide EHR and LIS implementations, and directed questions about weekly readings. Lectures are given by the informatics faculty, guest informatics faculty, current and former fellows, and information systems members in the network, and are open to all professional members of the pathology departments at the AMCs. Learning laboratories consist of small-group exercises geared toward a variety of learning styles, and are driven by both the fellows and a member of the informatics faculty. The learning laboratories have created a forum for discussing real-time and real-world pathology informatics matters, and for incorporating awareness of and timely discussions about the latest pathology informatics literature. These changes have diversified the delivery of the fellowship′s core curriculum, increased exposure of faculty, fellows and trainees to one another, and more equitably distributed teaching responsibilities among the entirety of the pathology informatics asset in the network. Though the above approach has been in place less than a year, we are presenting it now as a technical note to allow for further discussion of evolving educational opportunities in pathology informatics and clinical informatics in general, and to highlight the importance of having a flexible fellowship with active participation from its fellows.
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- 2014
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5. Pathology informatics fellowship training: Focus on molecular pathology
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Diana Mandelker, Roy E Lee, Mia Y Platt, Gregory Riedlinger, Andrew Quinn, Luigi K. F. Rao, Veronica E Klepeis, Michael Mahowald, William J Lane, Bruce A Beckwith, Jason M Baron, David S McClintock, Frank C Kuo, Matthew S Lebo, and John R Gilbertson
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Clinical informatics, informatics fellowship training, molecular pathology informatics, molecular pathology training, molecular pathology, pathology informatics fellowship, pathology informatics training, pathology informatics ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Pathology ,RB1-214 - Abstract
Background: Pathology informatics is both emerging as a distinct subspecialty and simultaneously becoming deeply integrated within the breadth of pathology practice. As specialists, pathology informaticians need a broad skill set, including aptitude with information fundamentals, information systems, workflow and process, and governance and management. Currently, many of those seeking training in pathology informatics additionally choose training in a second subspecialty. Combining pathology informatics training with molecular pathology is a natural extension, as molecular pathology is a subspecialty with high potential for application of modern biomedical informatics techniques. Methods and Results: Pathology informatics and molecular pathology fellows and faculty evaluated the current fellowship program′s core curriculum topics and subtopics for relevance to molecular pathology. By focusing on the overlap between the two disciplines, a structured curriculum consisting of didactics, operational rotations, and research projects was developed for those fellows interested in both pathology informatics and molecular pathology. Conclusions: The scope of molecular diagnostics is expanding dramatically as technology advances and our understanding of disease extends to the genetic level. Here, we highlight many of the informatics challenges facing molecular pathology today, and outline specific informatics principles necessary for the training of future molecular pathologists.
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- 2014
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6. Different tracks for pathology informatics fellowship training: Experiences of and input from trainees in a large multisite fellowship program
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Bruce P Levy, David S McClintock, Roy E Lee, William J Lane, Veronica E Klepeis, Jason M Baron, Maristela L Onozato, JiYeon Kim, Victor Brodsky, Bruce Beckwith, Frank Kuo, and John R Gilbertson
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Clinical informatics training ,clinical informatics ,fellowship tracks ,informatics fellowship training ,informatics teaching ,pathology informatics fellowship ,pathology informatics training ,pathology informatics ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Pathology ,RB1-214 - Abstract
Background: Pathology Informatics is a new field; a field that is still defining itself even as it begins the formalization, accreditation, and board certification process. At the same time, Pathology itself is changing in a variety of ways that impact informatics, including subspecialization and an increased use of data analysis. In this paper, we examine how these changes impact both the structure of Pathology Informatics fellowship programs and the fellows′ goals within those programs. Materials and Methods: As part of our regular program review process, the fellows evaluated the value and effectiveness of our existing fellowship tracks (Research Informatics, Clinical Two-year Focused Informatics, Clinical One-year Focused Informatics, and Clinical 1 + 1 Subspecialty Pathology and Informatics). They compared their education, informatics background, and anticipated career paths and analyzed them for correlations between those parameters and the fellowship track chosen. All current and past fellows of the program were actively involved with the project. Results: Fellows′ anticipated career paths correlated very well with the specific tracks in the program. A small set of fellows (Clinical - one or two year - Focused Informatics tracks) anticipated clinical careers primarily focused in informatics (Director of Informatics). The majority of the fellows, however, anticipated a career practicing in a Pathology subspecialty, using their informatics training to enhance that practice (Clinical 1 + 1 Subspecialty Pathology and Informatics Track). Significantly, all fellows on this track reported they would not have considered a Clinical Two-year Focused Informatics track if it was the only track offered. The Research and the Clinical One-year Focused Informatics tracks each displayed unique value for different situations. Conclusions: It seems a "one size fits all" fellowship structure does not fit the needs of the majority of potential Pathology Informatics candidates. Increasingly, these fellowships must be able to accommodate the needs of candidates anticipating a wide range of Pathology Informatics career paths, be able to accommodate Pathology′s increasingly subspecialized structure, and do this in a way that respects the multiple fellowships needed to become a subspecialty pathologist and informatician. This is further complicated as Pathology Informatics begins to look outward and takes its place in the growing, and still ill-defined, field of Clinical Informatics, a field that is not confined to just one medical specialty, to one way of practicing medicine, or to one way of providing patient care.
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- 2012
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7. A core curriculum for clinical fellowship training in pathology informatics
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David S McClintock, Bruce P Levy, William J Lane, Roy E Lee, Jason M Baron, Veronica E Klepeis, Maristela L Onozato, JiYeon Kim, Anand S Dighe, Bruce A Beckwith, Frank Kuo, Stephen Black-Schaffer, and John R Gilbertson
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Clinical informatics curriculum ,clinical informatics teaching ,informatics core content ,informatics curriculum ,pathology informatics core content ,pathology informatics curriculum ,pathology informatics definition ,pathology informatics fellowship ,pathology informatics teaching ,pathology informatics ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Pathology ,RB1-214 - Abstract
Background: In 2007, our healthcare system established a clinical fellowship program in Pathology Informatics. In 2010 a core didactic course was implemented to supplement the fellowship research and operational rotations. In 2011, the course was enhanced by a formal, structured core curriculum and reading list. We present and discuss our rationale and development process for the Core Curriculum and the role it plays in our Pathology Informatics Fellowship Training Program. Materials and Methods: The Core Curriculum for Pathology Informatics was developed, and is maintained, through the combined efforts of our Pathology Informatics Fellows and Faculty. The curriculum was created with a three-tiered structure, consisting of divisions, topics, and subtopics. Primary (required) and suggested readings were selected for each subtopic in the curriculum and incorporated into a curated reading list, which is reviewed and maintained on a regular basis. Results: Our Core Curriculum is composed of four major divisions, 22 topics, and 92 subtopics that cover the wide breadth of Pathology Informatics. The four major divisions include: (1) Information Fundamentals, (2) Information Systems, (3) Workflow and Process, and (4) Governance and Management. A detailed, comprehensive reading list for the curriculum is presented in the Appendix to the manuscript and contains 570 total readings (current as of March 2012). Discussion: The adoption of a formal, core curriculum in a Pathology Informatics fellowship has significant impacts on both fellowship training and the general field of Pathology Informatics itself. For a fellowship, a core curriculum defines a basic, common scope of knowledge that the fellowship expects all of its graduates will know, while at the same time enhancing and broadening the traditional fellowship experience of research and operational rotations. For the field of Pathology Informatics itself, a core curriculum defines to the outside world, including departments, companies, and health systems considering hiring a pathology informatician, the core knowledge set expected of a person trained in the field and, more fundamentally, it helps to define the scope of the field within Pathology and healthcare in general.
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- 2012
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8. Resilience of melanoma diagnostics at a tertiary-care hospital during the SARS-CoV-2 pandemic
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Soma Jobbagy, Kristine M. Chaudet, Matthew Gayhart, Veronica E. Klepeis, Genevieve Boland, Hensin Tsao, and Lyn M. Duncan
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Dermatology - Published
- 2022
9. Exploring the College of American Pathologists Electronic Cancer Checklists: What They Are and What They Can Do for You
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Mignon Dryden, Ross W. Simpson, Veronica E. Klepeis, Robert W. Allan, Jyoti P. Balani, Vanda F. Torous, John R. Srigley, Michael A. Berman, Giovanna A. Giannico, Christopher R. Jackson, Jordan Erik Olson, Michelle Heayn, George G. Birdsong, Mary E. Edgerton, Brett Baskovich, S. Joseph Sirintrapun, Jason R. Pettus, Deven L. Smith, and Elizabeth A. Dellers Md
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Medical Laboratory Technology ,medicine.medical_specialty ,business.industry ,Family medicine ,MEDLINE ,Medicine ,Cancer ,General Medicine ,business ,medicine.disease ,Pathology and Forensic Medicine - Published
- 2020
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10. In Reply
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Vanda F. Torous, Robert W. Allan, Jyoti Balani, Brett Baskovich, George G. Birdsong, Elizabeth Dellers, Mignon Dryden, Mary E. Edgerton, Giovanna A. Giannico, Michelle Heayn, Christopher R. Jackson, Veronica E. Klepeis, Jordan E. Olson, Jason R. Pettus, Ross W. Simpson, S. Joseph Sirintrapun, Deven L. Smith, John R. Srigley, and Michael A. Berman
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Medical Laboratory Technology ,General Medicine ,Pathology and Forensic Medicine - Published
- 2021
11. Case 11-2020: A 37-Year-Old Man with Facial Droop, Dysarthria, and Kidney Failure
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Veronica E. Klepeis, Otto Rapalino, Andrew Z. Fenves, Jeffrey S. Berns, Melis N. Anahtar, and Joseph El Khoury
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Adult ,Male ,congenital, hereditary, and neonatal diseases and abnormalities ,medicine.medical_specialty ,medicine.medical_treatment ,Facial Paralysis ,Brain Abscess ,030204 cardiovascular system & hematology ,Kidney ,Peritoneal dialysis ,Diagnosis, Differential ,03 medical and health sciences ,chemistry.chemical_compound ,Dysarthria ,0302 clinical medicine ,Glomerulonephritis ,stomatognathic system ,X ray computed ,medicine ,Humans ,Mucormycosis ,Voltage droop ,030212 general & internal medicine ,Renal Insufficiency ,Substance Abuse, Intravenous ,Ultrasonography ,Creatinine ,urogenital system ,business.industry ,Heroin Dependence ,Kidney pathology ,Brain ,General Medicine ,Amyloidosis ,nervous system diseases ,stomatognathic diseases ,medicine.anatomical_structure ,chemistry ,Radiology ,medicine.symptom ,business ,Tomography, X-Ray Computed ,Peritoneal Dialysis - Abstract
A Man with Facial Droop, Dysarthria, and Kidney Failure A 37-year-old man with a history of injection-drug use presented with a facial droop, dysarthria, and kidney failure. The creatinine level wa...
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- 2020
12. Development of a database system and image viewer to assist in the correlation of histopathologic features and digital image analysis with clinical and molecular genetic information
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Akira Nakamura, Yukako Yagi, Xun Xu, Gregory Riedlinger, Mari Mino-Kenudson, Bruce D. Levy, A. John Iafrate, and Veronica E. Klepeis
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0301 basic medicine ,Pathology ,medicine.medical_specialty ,Database ,business.industry ,Relational database ,General Medicine ,computer.software_genre ,Pathology and Forensic Medicine ,Textual information ,03 medical and health sciences ,Multiple data ,030104 developmental biology ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Digital image analysis ,medicine ,%22">Fish ,business ,computer - Abstract
Pathologists are required to integrate data from multiple sources when making a diagnosis. Furthermore, whole slide imaging (WSI) and next generation sequencing will escalate data size and complexity. Development of well-designed databases that can allow efficient navigation between multiple data types is necessary for both clinical and research purposes. We developed and evaluated an interactive, web-based database that integrates clinical, histologic, immunohistochemical and genetic information to aid in pathologic diagnosis and interpretation with nine lung adenocarcinoma cases. To minimize sectioning artifacts, representative blocks were serially sectioned using automated tissue sectioning (Kurabo Industries, Osaka Japan) and selected slides were stained by multiple techniques, (hematoxylin and eosin [H&E], immunohistochemistry [IHC] or fluorescence in situ hybridization [FISH]). Slides were digitized by WSI scanners. An interactive relational database was designed based on a list of proposed fields covering a variety of clinical, pathologic and molecular parameters. By focusing on the three main tasks of 1.) efficient management of textual information, 2.) effective viewing of all varieties of stained whole slide images (WSI), and 3.) assistance in evaluating WSI with computer-aided diagnosis, this database prototype shows great promise for multi-modality research and diagnosis.
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- 2016
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13. Implementing the DICOM Standard for Digital Pathology
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Ron Kikinis, Veronica E. Klepeis, Steven D. Pieper, David H. Hwang, Gopal Kotecha, Giles W. Boland, Andriy Fedorov, Katherine P. Andriole, Jeffrey A. Golden, Jochen K. Lennerz, David A. Clunie, David S. Milstone, Markus D. Herrmann, Sean Doyle, Keith J. Dreyer, Long P. Le, A. John Iafrate, Mark Michalski, James A. Brink, David N. Louis, Thomas J. Schultz, and George L. Mutter
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Computer science ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Health Informatics ,Lossy compression ,lcsh:Computer applications to medicine. Medical informatics ,030218 nuclear medicine & medical imaging ,Pathology and Forensic Medicine ,03 medical and health sciences ,DICOM ,0302 clinical medicine ,lcsh:Pathology ,DICOMweb ,Information retrieval ,slide scanning ,computer.file_format ,Computational pathology ,JPEG ,image compression ,3. Good health ,Computer Science Applications ,whole slide imaging ,Metadata ,030220 oncology & carcinogenesis ,JPEG 2000 ,lcsh:R858-859.7 ,Original Article ,Image file formats ,computer ,lcsh:RB1-214 ,Image compression - Abstract
Background: Digital Imaging and Communications in Medicine (DICOM®) is the standard for the representation, storage, and communication of medical images and related information. A DICOM file format and communication protocol for pathology have been defined; however, adoption by vendors and in the field is pending. Here, we implemented the essential aspects of the standard and assessed its capabilities and limitations in a multisite, multivendor healthcare network. Methods: We selected relevant DICOM attributes, developed a program that extracts pixel data and pixel-related metadata, integrated patient and specimen-related metadata, populated and encoded DICOM attributes, and stored DICOM files. We generated the files using image data from four vendor-specific image file formats and clinical metadata from two departments with different laboratory information systems. We validated the generated DICOM files using recognized DICOM validation tools and measured encoding, storage, and access efficiency for three image compression methods. Finally, we evaluated storing, querying, and retrieving data over the web using existing DICOM archive software. Results: Whole slide image data can be encoded together with relevant patient and specimen-related metadata as DICOM objects. These objects can be accessed efficiently from files or through RESTful web services using existing software implementations. Performance measurements show that the choice of image compression method has a major impact on data access efficiency. For lossy compression, JPEG achieves the fastest compression/decompression rates. For lossless compression, JPEG-LS significantly outperforms JPEG 2000 with respect to data encoding and decoding speed. Conclusion: Implementation of DICOM allows efficient access to image data as well as associated metadata. By leveraging a wealth of existing infrastructure solutions, the use of DICOM facilitates enterprise integration and data exchange for digital pathology.
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- 2018
14. IgG4-related Orbital Disease and Its Mimics in a Western Population
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Arthur S. Grove, Nancy L. Harris, Vikram Deshpande, Veronica E. Klepeis, Frederic I. Preffer, Judith A. Ferry, John H. Stone, and Aliyah R. Sohani
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Adult ,Male ,Pathology ,medicine.medical_specialty ,Biopsy ,Population ,Lacrimal gland ,White People ,Autoimmune Diseases ,Immunophenotyping ,Pathology and Forensic Medicine ,Diagnosis, Differential ,Dacryocystitis ,Young Adult ,Predictive Value of Tests ,Recurrence ,Orbital Pseudotumor ,parasitic diseases ,Humans ,Medicine ,education ,Aged ,Gene Rearrangement ,education.field_of_study ,Sclerosis ,Asian ,business.industry ,Dacryoadenitis ,Gene rearrangement ,Middle Aged ,Prognosis ,medicine.disease ,Immunohistochemistry ,United States ,eye diseases ,Black or African American ,medicine.anatomical_structure ,Immunoglobulin G ,Female ,Surgery ,Anatomy ,Differential diagnosis ,Immunoglobulin Heavy Chains ,business ,Granulomatosis with polyangiitis ,Biomarkers ,Orbit (anatomy) - Abstract
Although chronic inflammatory disorders of the ocular adnexa are relatively common, their pathogenesis is in many cases poorly understood. Recent investigation suggests that many cases of sclerosing orbital inflammation are a manifestation of IgG4-related disease; however, most patients reported have been Asian, and it is not clear whether the results of studies from the Far East can be reliably extrapolated to draw conclusions about Western patients. We evaluated 38 cases previously diagnosed as orbital inflammatory pseudotumor or chronic dacryoadenitis to determine whether our cases fulfill the criteria for IgG4-RD (IgG4-related dacryoadenitis when involving the lacrimal gland, and IgG4-related sclerosing orbital inflammation when involving orbital soft tissue). Fifteen patients had IgG4-related dacryoadenitis or orbital inflammation. These patients included 9 men and 6 women, aged 24 to 77 years (median, 64 y). Lesions involved orbital soft tissue (8 cases), lacrimal gland (6 cases), and canthus (1 case). In 1 case, focal in situ follicular neoplasia was seen in a background of IgG4-RD. In another case, a clonal IGH gene rearrangement was detected. Four patients with IgG4-RD had evidence of IgG4-RD in other anatomic sites. Five patients, 1 man and 4 women, aged 26 to 74 years (median 50 y) had orbital lesions (2 involving lacrimal gland, 3 involving soft tissue) suspicious for, but not diagnostic of, IgG4-RD. Of 16 patients with IgG4-RD or probable IgG4-RD with information available regarding the course of their disease, 11 patients experienced recurrent or persistent orbital disease. However, no patient developed lymphoma, and no patient died of complications of IgG4-RD. Eighteen patients had lesions not representing IgG4-RD. They included 6 male and 12 female individuals aged 6 to 77 years (median, 47 y). These patients had a variety of diseases, including granulomatosis with polyangiitis (3 cases), Rosai-Dorfman disease (1 case), nonspecific chronic inflammation and fibrosis involving lacrimal gland or soft tissue (12 cases), and others. Clinical and pathologic findings among our patients with IgG4-RD involving the orbit are similar to those previously described in Asian patients. Careful evaluation of histologic and immunophenotypic features and clinical correlation are required to distinguish orbital IgG4-RD from other sclerosing inflammatory lesions in the orbit.
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- 2015
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15. De novoacute myeloid leukemia with 20-29% blasts is less aggressive than acute myeloid leukemia with ≥30% blasts in older adults: a Bone Marrow Pathology Group study
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Robert P. Hasserjian, Michael Joseph Cascio, Veronica E. Klepeis, Carlos E. Bueso-Ramos, Heesun J. Rogers, Federico Campigotto, Tracy I. George, Daniel A. Arber, William G. Morice, Eric D. Hsi, Richard Stone, Sa A. Wang, Cassie Booth, Bin Fu, Attilio Orazi, Frank Moore, Rachel C. Ochs, Jiong Yan, David P. Steensma, Adam Bagg, Jamie Odem, Kathryn Foucar, Craig R. Soderquist, Donna Neuberg, Daniel J. DeAngelo, and Amer Mahmoud
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NPM1 ,Pathology ,medicine.medical_specialty ,Myeloid ,business.industry ,Anemia ,medicine.medical_treatment ,Myeloid leukemia ,Retrospective cohort study ,Hematology ,Hematopoietic stem cell transplantation ,medicine.disease ,Leukemia ,medicine.anatomical_structure ,hemic and lymphatic diseases ,medicine ,Bone marrow ,business - Abstract
It is controversial whether acute myeloid leukemia (AML) patients with 20–29% bone marrow (BM) blasts, formerly referred to as refractory anemia with excess blasts in transformation (RAEBT), should be considered AML or myelodysplastic syndrome (MDS) for the purposes of treatment and prognostication. We retrospectively studied 571 de novo AML in patients aged >50 years, including 142 RAEBT and 429 with ≥30% blasts (AML30), as well as 151 patients with 10–19% BM blasts (RAEB2). RAEBT patients were older and had lower white blood count, but higher hemoglobin, platelet count, and karyotype risk scores compared to AML30, while these features were similar to RAEB2. FLT3 and NPM1 mutations and monocytic morphology occurred more commonly in AML30 than in RAEBT. RAEBT patients were treated less often with induction therapy than AML30, whereas allogeneic stem cell transplant frequency was similar. The median and 4-year OS of RAEBT patients were longer than those of AML30 patients (20.5 vs 12.0 months and 28.6% vs 20.4%, respectively, P = 0.003); this difference in OS was manifested in patients in the intermediate UKMRC karyotype risk group, whereas OS of RAEBT patients and AML30 patients in the adverse karyotype risk group were not significantly different. Multivariable analysis showed that RAEBT (P
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- 2014
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16. Case 13-2013
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Pallavi Sagar, Veronica E. Klepeis, and Michael J. Kelly
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medicine.medical_specialty ,Hematologic tests ,Fatal outcome ,business.industry ,media_common.quotation_subject ,General Medicine ,Surgery ,medicine.anatomical_structure ,Case records ,Joint pain ,Medicine ,Girl ,General hospital ,medicine.symptom ,business ,Recent onset ,Pelvis ,media_common - Abstract
A 6-year-old girl was admitted to this hospital because of bone and joint pain for 1 year and recent onset of fever and abdominal distention. Imaging revealed a mass in the abdominal and pelvic region and lesions in the liver, kidneys, and multiple bones.
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- 2013
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17. Active MMP-2 effectively identifies the presence of colorectal cancer
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John B. Willett, Sania Shuja, David McAneny, Jinguo Cai, Veronica E. Klepeis, and Mary Jo Murnane
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Adult ,Male ,Cancer Research ,medicine.medical_specialty ,Pathology ,Serial dilution ,Colorectal cancer ,Immunoblotting ,Gelatinase A ,Matrix metalloproteinase ,Malignancy ,Gastroenterology ,Article ,Internal medicine ,Biomarkers, Tumor ,medicine ,Humans ,Gelatinase ,Aged ,Neoplasm Staging ,chemistry.chemical_classification ,Enzyme Precursors ,business.industry ,Cancer ,Middle Aged ,Prognosis ,medicine.disease ,Enzyme ,Matrix Metalloproteinase 9 ,ROC Curve ,Oncology ,chemistry ,Gelatinases ,Matrix Metalloproteinase 2 ,Female ,Colorectal Neoplasms ,business - Abstract
Fully active MMP-2 is expressed at such low levels in human tissues that studies often fail to confirm its value as a cancer marker despite strong associations with malignancy. This study utilized careful extraction, accurate activity measurements, standardization to purified controls and a new statistical metric to determine whether active MMP-2 is an effective indicator of colorectal cancer compared to pro-MMP-2 or pro-MMP-9. MMP-2 and MMP-9 activities were analyzed in matched normal and cancer samples from 269 patients by gelatin zymography, computer-assisted image analysis, serial dilutions of strong samples and standardization to controls. An index of effect size was designed for comparative evaluation of active MMP-2, pro-MMP-2 and pro-MMP-9 activities. For each gelatinase, mean activity and protein levels/mg soluble protein in normal mucosa and colorectal cancer were calculated for the first time with respect to commercial standards. Active MMP-2 activity, detected in 99% of colorectal cancers, was higher in 95% of cancers (on average 10-fold) than in normal mucosa. Levels of pro-MMP-2 and pro-MMP-9, but not active MMP-9, activities were also significantly higher in cancers versus normal. However, active MMP-2 activity provided the most effective test for the presence of cancer (P< 0.0001) with an effect size statistically significantly larger than for either pro-MMP-2 or pro-MMP-9. Receiver operating characteristic (ROC) curves demonstrated that a cut-off for active MMP-2 of >44 SDU activity/mg soluble protein (>180 pg/mg), which is three times mean normal levels, would permit detection of colorectal cancer with an estimated sensitivity of 84% and estimated specificity of 93%.
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- 2009
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18. Nephrogenic Systemic Fibrosis: A Pathologic Study of Autopsy Cases
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Aashiyana F, Koreishi, Rosalynn M, Nazarian, Adam J, Saenz, Veronica E, Klepeis, Anna G, McDonald, Alton Brad, Farris, Robert B, Colvin, Lyn M, Duncan, Rajni V, Mandal, and Jonathan, Kay
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Adult ,Male ,Pneumonia ,General Medicine ,Middle Aged ,Nephrogenic Fibrosing Dermopathy ,Pathology and Forensic Medicine ,Medical Laboratory Technology ,Fatal Outcome ,Risk Factors ,Cause of Death ,Thromboembolism ,Humans ,Female ,Autopsy ,Aged - Abstract
Context.—Nephrogenic systemic fibrosis (NSF) is a rare but serious disorder initially described as a purely dermatologic process. Isolated autopsy reports have described multiorgan involvement by this disease. Objective.—To further illustrate the varied and systemic involvement of NSF by describing the autopsy experience at the Massachusetts General Hospital. Design.—We describe the findings in a series of 4 autopsy cases of patients diagnosed with NSF. This report describes the history of renal dysfunction, exposure to gadolinium-containing contrast agents, specific laboratory parameters, and the extent of systemic involvement identified by postmortem examination. Results.—Causes of death included systemic thromboembolic disease (n = 3) and pneumonia (n = 1). Laboratory parameters and type, dose, or timing of gadolinium-containing contrast-agent exposure did not correlate with clinical findings and outcomes. All patients demonstrated cutaneous manifestations of the disease and nephrocalcinosis, with some exhibiting calcification and fibrosis of the dura, thyroid, and heart including the cardiac conduction system, on postmortem examination. Soft tissue calcification was associated with concurrent hyperparathyroidism or high serum parathyroid hormone levels. Conclusions.—Thromboembolic disease can be a significant clinical complication of NSF. Patients with NSF may also develop characteristic histologic features of fibrosis and calcification in multiple organs, with significant morbidity and mortality. This autopsy series highlights the variability of systemic manifestations of NSF.
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- 2009
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19. Development of a database system and image viewer to assist in the correlation of histopathologic features and digital image analysis with clinical and molecular genetic information
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Yukako, Yagi, Gregory, Riedlinger, Xun, Xu, Akira, Nakamura, Bruce, Levy, A John, Iafrate, Mari, Mino-Kenudson, and Veronica E, Klepeis
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Aged, 80 and over ,Male ,Lung Neoplasms ,Pathology, Clinical ,Databases, Factual ,High-Throughput Nucleotide Sequencing ,Sequence Analysis, DNA ,Adenocarcinoma ,Middle Aged ,Immunohistochemistry ,Japan ,Image Processing, Computer-Assisted ,Database Management Systems ,Humans ,Female ,In Situ Hybridization, Fluorescence ,Aged ,Retrospective Studies - Abstract
Pathologists are required to integrate data from multiple sources when making a diagnosis. Furthermore, whole slide imaging (WSI) and next generation sequencing will escalate data size and complexity. Development of well-designed databases that can allow efficient navigation between multiple data types is necessary for both clinical and research purposes. We developed and evaluated an interactive, web-based database that integrates clinical, histologic, immunohistochemical and genetic information to aid in pathologic diagnosis and interpretation with nine lung adenocarcinoma cases. To minimize sectioning artifacts, representative blocks were serially sectioned using automated tissue sectioning (Kurabo Industries, Osaka Japan) and selected slides were stained by multiple techniques, (hematoxylin and eosin [HE], immunohistochemistry [IHC] or fluorescence in situ hybridization [FISH]). Slides were digitized by WSI scanners. An interactive relational database was designed based on a list of proposed fields covering a variety of clinical, pathologic and molecular parameters. By focusing on the three main tasks of 1.) efficient management of textual information, 2.) effective viewing of all varieties of stained whole slide images (WSI), and 3.) assistance in evaluating WSI with computer-aided diagnosis, this database prototype shows great promise for multi-modality research and diagnosis.
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- 2015
20. TGF-beta1 regulates TGF-beta1 and FGF-2 mRNA expression during fibroblast wound healing
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Qin Hui Song, Vickery Trinkaus-Randall, Veronica E. Klepeis, and Matthew A. Nugent
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Stromal cell ,medicine.medical_treatment ,Cell Culture Techniques ,Fibroblast growth factor ,Pathology and Forensic Medicine ,Cornea ,Transforming Growth Factor beta1 ,Organ Culture Techniques ,Cell Movement ,Transforming Growth Factor beta ,medicine ,RNA, Messenger ,Northern blot ,Fibroblast ,In Situ Hybridization ,Wound Healing ,Dose-Response Relationship, Drug ,biology ,Growth factor ,Original Articles ,Transforming growth factor beta ,Fibroblasts ,Blotting, Northern ,Molecular biology ,medicine.anatomical_structure ,Gene Expression Regulation ,biology.protein ,Fibroblast Growth Factor 2 ,Stromal Cells ,Wound healing ,Corneal Injuries ,Transforming growth factor - Abstract
Aims: To evaluate the expression of transforming growth factor β1 (TGF-β1) and fibroblast growth factor 2 (FGF-2) mRNA in stromal cells in response to injury in the presence of either TGF-β1 or FGF-2. It has been shown previously that heparan sulfate proteoglycans and FGF-2 are present transiently during wound repair in vivo and that an increase in TGF-β1 mRNA is detected rapidly after injury. Methods: Primary corneal fibroblasts were cultured to confluency, serum starved, and linear wound(s) were made in medium containing TGF-β1 or FGF-2. TGF-β1 and FGF-2 mRNA expression were evaluated using both northern blot analysis and in situ hybridisation. Both dose dependent and time course experiments were performed. Whole eye organ culture experiments were also carried out and growth factor expression was assessed. Results: Injury and exogenous TGF-β1 increased TGF-β1 mRNA values. The increase in expression of FGF-2 mRNA was not detected until wound closure. In contrast, FGF-2 inhibited the expression of TGF-β1. TGF-β1 increased TGF-β1 mRNA stability but did not alter that of FGF-2. Migration assay data demonstrated that unstimulated stromal cells could be activated to migrate to specific growth factors. Conclusions: TGF-β1 specifically enhances cellular responsiveness, as shown by increased stability after injury and the acquisition of a migratory phenotype. These data suggest that there is an integral relation during wound repair between TGF-β1 and FGF-2.
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- 2002
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21. The ongoing evolution of the core curriculum of a clinical fellowship in pathology informatics
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William J. Lane, Bruce A. Beckwith, Diana Mandelker, Ji Yeon Kim, Victor Brodsky, John R. Gilbertson, Andrew M. Quinn, David S. McClintock, Frank C. Kuo, Roy E Lee, Bruce Levy, Veronica E. Klepeis, Gregory Riedlinger, Mia Y Platt, Jason M. Baron, and Luigi K. F. Rao
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Pathology ,medicine.medical_specialty ,Computer science ,pathology informatics curriculum ,Health Informatics ,pathology informatics teaching ,Subspecialty ,lcsh:Computer applications to medicine. Medical informatics ,Health informatics ,GeneralLiterature_MISCELLANEOUS ,Pathology and Forensic Medicine ,Learning styles ,Health Administration Informatics ,Health care ,medicine ,Information system ,lcsh:Pathology ,ComputingMilieux_COMPUTERSANDEDUCATION ,Technical Note ,Clinical informatics curriculum ,business.industry ,Computer Science Applications ,Business informatics ,Clinical informatics curriculum, clinical informatics teaching, pathology informatics, pathology informatics curriculum, pathology informatics teaching ,Informatics ,clinical informatics teaching ,pathology informatics ,lcsh:R858-859.7 ,business ,lcsh:RB1-214 - Abstract
The Partners HealthCare system's Clinical Fellowship in Pathology Informatics (Boston, MA, USA) faces ongoing challenges to the delivery of its core curriculum in the forms of: (1) New classes of fellows annually with new and varying educational needs and increasingly fractured, enterprise-wide commitments; (2) taxing electronic health record (EHR) and laboratory information system (LIS) implementations; and (3) increasing interest in the subspecialty at the academic medical centers (AMCs) in what is a large health care network. In response to these challenges, the fellowship has modified its existing didactic sessions and piloted both a network-wide pathology informatics lecture series and regular "learning laboratories". Didactic sessions, which had previously included more formal discussions of the four divisions of the core curriculum: Information fundamentals, information systems, workflow and process, and governance and management, now focus on group discussions concerning the fellows' ongoing projects, updates on the enterprise-wide EHR and LIS implementations, and directed questions about weekly readings. Lectures are given by the informatics faculty, guest informatics faculty, current and former fellows, and information systems members in the network, and are open to all professional members of the pathology departments at the AMCs. Learning laboratories consist of small-group exercises geared toward a variety of learning styles, and are driven by both the fellows and a member of the informatics faculty. The learning laboratories have created a forum for discussing real-time and real-world pathology informatics matters, and for incorporating awareness of and timely discussions about the latest pathology informatics literature. These changes have diversified the delivery of the fellowship's core curriculum, increased exposure of faculty, fellows and trainees to one another, and more equitably distributed teaching responsibilities among the entirety of the pathology informatics asset in the network. Though the above approach has been in place less than a year, we are presenting it now as a technical note to allow for further discussion of evolving educational opportunities in pathology informatics and clinical informatics in general, and to highlight the importance of having a flexible fellowship with active participation from its fellows.
- Published
- 2014
22. cDNA and genomic cloning of lacritin, a novel secretion enhancing factor from the human lacrimal gland11Edited by J. Karn
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Sandhya Sanghi, Rajesh Kumar, Vickery Trinkaus-Randall, Veronica E. Klepeis, Henry F. Frierson, Angela J. Lumsden, Gordon W. Laurie, and Douglas Dickinson
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Lacritin ,medicine.medical_specialty ,biology ,Constitutive secretory pathway ,Tyrosine phosphorylation ,Lacrimal gland ,Cell biology ,Paracrine signalling ,chemistry.chemical_compound ,Endocrinology ,medicine.anatomical_structure ,chemistry ,Structural Biology ,Internal medicine ,medicine ,biology.protein ,Acinar cell ,Secretion ,Autocrine signalling ,Molecular Biology - Abstract
Multiple extracellular factors are hypothesized to promote the differentiation of unstimulated and/or stimulated secretory pathways in exocrine secretory cells, but the identity of differentiation factors, particularly those organ-specific, remain largely unknown. Here, we report on the identification of a novel secreted glycoprotein, lacritin, that enhances exocrine secretion in overnight cultures of lacrimal acinar cells which otherwise display loss of secretory function. Lacritin mRNA and protein are highly expressed in human lacrimal gland, moderately in major and minor salivary glands and slightly in thyroid. No lacritin message or protein is detected elsewhere among more than 50 human tissues examined. Lacritin displays partial similarity to the glycosaminoglycan-binding region of brain-specific neuroglycan C (32% identity over 102 amino acid residues) and to the possibly mucin-like amino globular region of fibulin-2 (30 % identity over 81 amino acid residues), and localizes primarily to secretory granules and secretory fluid. The lacritin gene consists of five exons, displays no alternative splicing and maps to 12q13. Recombinant lacritin augments unstimulated but not stimulated acinar cell secretion, promotes ductal cell proliferation, and stimulates signaling through tyrosine phosphorylation and release of calcium. It binds collagen IV, laminin-1, entactin/nidogen-1, fibronectin and vitronectin, but not collagen I, heparin or EGF. As an autocrine/paracrine enhancer of the lacrimal constitutive secretory pathway, ductal cell mitogen and stimulator of corneal epithelial cells, lacritin may play a key role in the function of the lacrimal gland-corneal axis.
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- 2001
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23. Case records of the Massachusetts General Hospital. Case 13-2013. A 6-year-old girl with bone and joint pain and abdominal distention
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Michael J, Kelly, Pallavi, Sagar, and Veronica E, Klepeis
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Radiography, Abdominal ,Hematologic Tests ,Pain ,Arthralgia ,Bone and Bones ,Diagnosis, Differential ,Fatal Outcome ,Bone Marrow ,Recurrence ,Positron-Emission Tomography ,Abdomen ,Leukemia, B-Cell ,Humans ,Female ,Child ,Lymphatic Diseases ,Dilatation, Pathologic - Published
- 2013
24. 3D‐based approach for efficient analysis of immunostained histology images in evaluating downstream pathway activation in malignant tumors with molecular targets
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Veronica E. Klepeis, Yukako Yagi, Mari Mino-Kenudson, and Pinky A. Bautista
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Downstream (manufacturing) ,Chemistry ,Genetics ,Molecular targets ,Histology ,Molecular Biology ,Biochemistry ,Biotechnology ,Cell biology - Published
- 2013
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25. Tumor islands in resected early-stage lung adenocarcinomas are associated with unique clinicopathologic and molecular characteristics and worse prognosis
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Alexandra E. Kovach, Dora Dias-Santagata, Swathi Tammireddy, Eugene J. Mark, Veronica E. Klepeis, Mari Mino-Kenudson, Rebecca S. Heist, Beow Y. Yeap, A. John Iafrate, Vicente Morales-Oyarvide, Maristela L. Onozato, and Yukako Yagi
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Adult ,Male ,Pathology ,medicine.medical_specialty ,Lung Neoplasms ,Tumor cells ,Biology ,Adenocarcinoma ,medicine.disease_cause ,Disease-Free Survival ,Article ,Pathology and Forensic Medicine ,Proto-Oncogene Proteins p21(ras) ,Proto-Oncogene Proteins ,medicine ,Humans ,Neoplasm Invasiveness ,Stage (cooking) ,Survival rate ,Aged ,Neoplasm Staging ,Aged, 80 and over ,Cell Nucleus ,Lung ,Middle Aged ,medicine.disease ,Prognosis ,Micropapillary pattern ,Log-rank test ,ErbB Receptors ,Pulmonary Alveoli ,Survival Rate ,medicine.anatomical_structure ,Mutation ,ras Proteins ,Surgery ,Female ,KRAS ,Anatomy ,Neoplasm Recurrence, Local - Abstract
Tumor islands-large collections of tumor cells isolated within alveolar spaces-can be seen in lung adenocarcinomas. Recently we observed by 3-dimensional reconstruction that these structures were connected with each other and with the main tumor in different tissue planes, raising the possibility of tumor islands being a means of extension. However, the clinical and prognostic significance of tumor islands remains unknown. In this study, we compared clinicopathologic and molecular characteristics and prognosis of stages I to II lung adenocarcinomas with tumor islands (n=58) and those without (n=203). Lung adenocarcinomas with tumor islands were more likely to occur in smokers, exhibit higher nuclear grade and a solid or micropapillary pattern of growth, and harbor KRAS mutations. In contrast, lung adenocarcinomas without tumor islands were more likely to present as minimally invasive adenocarcinoma, show a lepidic pattern of growth, and harbor EGFR mutations. Although there was no difference in stage, the prognosis of lung adenocarcinomas with tumor islands was significantly worse than those without. The 5-year recurrence-free survival for patients with tumor islands and those without was 44.6% and 74.4%, respectively (log rank P=0.010). The survival difference remained significant (P
- Published
- 2012
26. A role of three-dimensional (3D) reconstruction in the classification of lung adenocarcinoma
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Maristela L, Onozato, Veronica E, Klepeis, Yukako, Yagi, and Mari, Mino-Kenudson
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Automation, Laboratory ,Histocytological Preparation Techniques ,Lung Neoplasms ,Adenocarcinoma of Lung ,Adenocarcinoma ,micropapillary ,histology ,Imaging, Three-Dimensional ,classification ,solid ,Image Processing, Computer-Assisted ,Humans ,Other ,Lung ,3D ,automation - Abstract
Background: Three-dimensional (3D)-reconstruction from paraffin embedded sections has been considered laborious and time-consuming. However, the high-resolution images of large object areas and different fields of view obtained by 3D-reconstruction make one wonder whether it can add a new insight into lung adenocarcinoma, the most frequent histology type of lung cancer characterized by its morphological heterogeneity. Objective: In this work, we tested whether an automated tissue sectioning machine and slide scanning system could generate precise 3D-reconstruction of microanatomy of the lung and help us better understand and define histologic subtypes of lung adenocarcinoma. Methods: Four formalin-fixed human lung adenocarcinoma resections were studied. Paraffin embedded tissues were sectioned with Kurabo-Automated tissue sectioning machine and serial sections were automatically stained and scanned with a Whole Slide Imaging system. The resulting stacks of images were 3D reconstructed by Pannoramic Viewer software. Results: Two of the four specimens contained islands of tumor cells detached in alveolar spaces that had not been described in any of the existing adenocarcinoma classifications. 3D-reconstruction revealed the details of spatial distribution and structural interaction of the tumor that could hardly be observed by 2D light microscopy studies. The islands of tumor cells extended into a deeper aspect of the tissue, and were interconnected with each other and with the main tumor with a solid pattern that was surrounded by the islands. The finding raises the question whether the islands of tumor cells should be classified into a solid pattern in the current classification. Conclusion: The combination of new technologies enabled us to build an effective 3D-reconstruction of resected lung adenocarcinomas. 3D-reconstruction may help us refine the classification of lung adenocarcinoma by adding detailed spatial/structural information to 2D light microscopy evaluation.
- Published
- 2012
27. Addressing Data Quality: A Necessary Step in Unlocking Anatomic Pathology Data for Complex Analytics and Computational Pathology
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James Floyd, Veronica E. Klepeis, Megan Monroe, Christopher A Garcia, Hui Su, and John R. Gilbertson
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Pathology ,medicine.medical_specialty ,Computational pathology ,Analytics ,business.industry ,Computer science ,Data quality ,medicine ,Anatomical pathology ,General Medicine ,business ,Data science - Published
- 2015
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28. Importance of Data Quality Improvement and Assessment in Anatomic Pathology
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Veronica E. Klepeis, Chris Garcia, and John R. Gilbertson
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medicine.medical_specialty ,business.industry ,Data quality ,Medicine ,Anatomical pathology ,Medical physics ,General Medicine ,business - Published
- 2015
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29. Content-based image retrieval of digitized histopathology in boosted spectrally embedded spaces
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Christopher A Garcia, Jason M Baron, Bruce A Beckwith, Victor Brodsky, Anand S Dighe, Thomas M Gudewicz, Ji Yeon Kim, Veronica E Klepeis, William J Lane, Roy E Lee, Bruce P Levy, Michael A Mahowald, Diana Mandelker, David S McClintock, Andrew M Quinn, Luigi K Rao, Gregory M Riedlinger, Joseph Rudolf, and John R Gilbertson
- Subjects
lcsh:Pathology ,Commentary ,lcsh:R858-859.7 ,Health Informatics ,lcsh:Computer applications to medicine. Medical informatics ,lcsh:RB1-214 ,Computer Science Applications ,Pathology and Forensic Medicine - Published
- 2015
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30. Injury and nucleotides induce phosphorylation of epidermal growth factor receptor: MMP and HB-EGF dependent pathway
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Vickery Trinkaus-Randall, C. Mayo, Ilene Boucher, Veronica E. Klepeis, and L. Yang
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MAPK/ERK pathway ,Biology ,Article ,Cell Line ,Cellular and Molecular Neuroscience ,chemistry.chemical_compound ,Adenosine Triphosphate ,Epidermal growth factor ,Cell Movement ,Humans ,Epidermal growth factor receptor ,Enzyme Inhibitors ,Phosphorylation ,RNA, Small Interfering ,Wound Healing ,Epidermal Growth Factor ,Kinase ,Nucleotides ,Triazines ,Purinergic receptor ,Epithelium, Corneal ,Receptors, Purinergic ,Epithelial Cells ,Sensory Systems ,Cell biology ,ErbB Receptors ,Ophthalmology ,chemistry ,biology.protein ,Intercellular Signaling Peptides and Proteins ,Signal transduction ,Mitogen-Activated Protein Kinases ,Adenosine triphosphate ,Corneal Injuries ,Heparin-binding EGF-like Growth Factor ,Signal Transduction - Abstract
The early events that occur rapidly after injury trigger signal cascades that are essential for proper wound closure of corneal epithelial cells. We hypothesize that injury releases ATP, which stimulates purinergic receptors and elicits the phosphorylation of epidermal growth factor receptor (EGFR) tyrosine residues and subsequent cell migration by a MMP and HB-EGF dependent pathway. We demonstrated that the inhibition of purinergic receptors with the antagonist, Reactive Blue 2, abrogated the phosphorylation of EGFR and ERK. Pre-incubation of cells with the EGFR kinase inhibitor, AG1478, and subsequent stimulation by injury or ATP resulted in a decrease in phosphorylation of EGFR and migration. Furthermore, downregulation of EGFR by siRNA, inhibited the EGF-induced intracellular Ca2+ wave. However, the response to injury and ATP was retained indicating the presence of two signaling pathways. Inhibition with either CRM197 or TIMP-3 decreased injury and nucleotide-induced phosphorylation of both EGFR and ERK. Incubation in the presence of a functional blocking antibody to HB-EGF also resulted in a decrease in the phosphorylation of EGFR. In addition, cell migration was inhibited by CRM197 and rescued when cells were incubated with HB-EGF. We showed that injury-induced phosphorylation of specific tyrosine residues and found that a similar pattern of phosphorylation was induced by trinucleotides. These studies indicate that injury-induced purinergic receptor activation leads to phosphorylation of EGFR, ERK and migration.
- Published
- 2006
31. P2Y receptors play a critical role in epithelial cell communication and migration
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Vickery Trinkaus-Randall, Ilene Weinger, Veronica E. Klepeis, and Elzbieta Kaczmarek
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Purinergic P2 Receptor Agonists ,Cell signaling ,P2Y receptor ,Cell Communication ,Biology ,Biochemistry ,Cornea ,Immunoenzyme Techniques ,Adenosine Triphosphate ,Cell Movement ,Homologous desensitization ,Animals ,Humans ,Receptor ,Molecular Biology ,Wound Healing ,Receptors, Purinergic P2 ,Purinergic receptor ,Epithelial Cells ,Cell Biology ,Purinergic signalling ,Adenosine receptor ,Cell biology ,ErbB Receptors ,Calcium ,Rabbits ,Signal transduction ,Signal Transduction - Abstract
Cellular injury induces a complex series of events that involves Ca 2 + signaling, cell communication, and migration. One of the first responses following mechanical injury is the propagation of a Ca 2 + wave (Klepeis et al. [2001] J Cell Sci 114(Pt 23):4185-4195). The wave is generated by the extracellular release of ATP, which also induces phosphorylation of ERK (Yang et al. [2004] J Cell Biochem 91 (5):938-950). ATP and other nucleotides, which bind to and activate specific purinergic receptors were used to mimic injury. Our goal was to determine which of the P2Y purinergic receptors are expressed and stimulated in corneal epithelial cells and which signaling pathways are activated leading to changes in cell migration, an event critical for wound closure. In this study, we demonstrated that the P2Y 1 , P2Y 2 , P2Y 4 , P2Y 6 , and P2Y 1 1 receptors were present in corneal epithelial cells. A potency profile was determined by Ca 2 + imaging for nucleotide agonists as follows: ATP ≥ UTP > ADP ≥ UDP. In contrast, negligible responses were seen for β,γ-meATP, a general P2X receptor agonist and adenosine, a P1 receptor agonist. Homologous desensitization of the Ca 2 + response was observed for the four nucleotides. However, P2Y receptor internalization and degradation was not detected following stimulation with ATP, which is in contrast to EGFR internalization observed in response to EGF. ATP induced cell migration was comparable to that of EGF and was maximal at 1 μM. Cells exposed to ATP, UTP, ADP, and UDP demonstrated a rapid twofold increase in phosphorylation of paxillin at Y 3 1 and Y 1 1 8 , however, there was no activation elicited by β,γ-meATP or adenosi ne. Additional studies demonstrated that wound closure was inhibited by reactive blue 2. These results indicate that P2Y receptors play a critical role in the injury repair process.
- Published
- 2004
32. Pathology informatics fellowship training: Focus on molecular pathology
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Bruce A. Beckwith, Jason M. Baron, Gilbertson, Andrew M. Quinn, David S. McClintock, Roy E Lee, Veronica E. Klepeis, Michael A. Mahowald, Frank C. Kuo, Platt My, Gregory Riedlinger, William J. Lane, Diana Mandelker, Matthew S. Lebo, and Luigi K. F. Rao
- Subjects
Pathology ,medicine.medical_specialty ,education ,informatics fellowship training ,Health Informatics ,Subspecialty ,lcsh:Computer applications to medicine. Medical informatics ,Health informatics ,Pathology and Forensic Medicine ,Health Administration Informatics ,molecular pathology ,medicine ,ComputingMilieux_COMPUTERSANDEDUCATION ,lcsh:Pathology ,Translational research informatics ,Curriculum ,Molecular pathology ,business.industry ,molecular pathology training ,Engineering informatics ,molecular pathology informatics ,Clinical informatics ,Computer Science Applications ,Informatics ,Clinical informatics, informatics fellowship training, molecular pathology informatics, molecular pathology training, molecular pathology, pathology informatics fellowship, pathology informatics training, pathology informatics ,pathology informatics ,lcsh:R858-859.7 ,Original Article ,business ,pathology informatics training ,pathology informatics fellowship ,lcsh:RB1-214 - Abstract
Background: Pathology informatics is both emerging as a distinct subspecialty and simultaneously becoming deeply integrated within the breadth of pathology practice. As specialists, pathology informaticians need a broad skill set, including aptitude with information fundamentals, information systems, workflow and process, and governance and management. Currently, many of those seeking training in pathology informatics additionally choose training in a second subspecialty. Combining pathology informatics training with molecular pathology is a natural extension, as molecular pathology is a subspecialty with high potential for application of modern biomedical informatics techniques. Methods and Results: Pathology informatics and molecular pathology fellows and faculty evaluated the current fellowship program's core curriculum topics and subtopics for relevance to molecular pathology. By focusing on the overlap between the two disciplines, a structured curriculum consisting of didactics, operational rotations, and research projects was developed for those fellows interested in both pathology informatics and molecular pathology. Conclusions: The scope of molecular diagnostics is expanding dramatically as technology advances and our understanding of disease extends to the genetic level. Here, we highlight many of the informatics challenges facing molecular pathology today, and outline specific informatics principles necessary for the training of future molecular pathologists.
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- 2014
33. Growth factors but not gap junctions play a role in injury-induced Ca2+ waves in epithelial cells
- Author
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Vickery Trinkaus-Randall, Veronica E. Klepeis, and Ann Cornell-Bell
- Subjects
Intracellular Fluid ,Thapsigargin ,Becaplermin ,Biology ,chemistry.chemical_compound ,BAPTA ,Epidermal growth factor ,Extracellular ,medicine ,Animals ,Humans ,Calcium Signaling ,Cell damage ,Cells, Cultured ,Platelet-Derived Growth Factor ,Epidermal Growth Factor ,Gap junction ,Epithelium, Corneal ,Gap Junctions ,Cell migration ,Epithelial Cells ,Cell Biology ,Proto-Oncogene Proteins c-sis ,medicine.disease ,EGTA ,chemistry ,Solubility ,Biophysics ,Calcium ,Rabbits ,Extracellular Space - Abstract
This paper characterizes the early responses of epithelial cells to injury. Ca2+ is an important early messenger that transiently increases in the cytoplasm of cells in response to external stimuli. Its elevation leads to the regulation of signaling pathways responsible for the downstream events important for wound repair, such as cell migration and proliferation. Live cell imaging in combination with confocal laser scanning microscopy of fluo-3 AM loaded cells was performed. We found that mechanical injury in a confluent region of cells creates an elevation in Ca2+ that is immediately initiated at the wound edge and travels as a wave to neighboring cells, with [Ca2+]i returning to background levels within two minutes. Addition of epidermal growth factor (EGF), but not platelet-derived growth factor-BB, resulted in increased [Ca2+]i, and EGF specifically enhanced the amplitude and duration of the injury-induced Ca2+ wave. Propagation of the Ca2+ wave was dependent on intracellular Ca2+ stores, as was demonstrated using both thapsigargin and Ca2+ chelators (EGTA and BAPTA/AM). Injury-induced Ca2+ waves were not mediated via gap junctions, as the gap-junction inhibitors 1-heptanol and 18α-glycyrrhetinic acid did not alter wave propagation, nor did the cells recover in photobleaching experiments. Additional studies also demonstrated that the wave could propagate across an acellular region. The propagation of the injury-induced Ca2+ wave occurs via diffusion of an extracellular mediator, most probably via a nucleotide such as ATP or UTP, that is released upon cell damage.Movies available on-line
- Published
- 2001
34. A core curriculum for clinical fellowship training in pathology informatics
- Author
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Stephen Black-Schaffer, David S. McClintock, John R. Gilbertson, Bruce A. Beckwith, Roy E Lee, Veronica E. Klepeis, Bruce Levy, Frank C. Kuo, Anand S. Dighe, Maristela L. Onozato, Ji Yeon Kim, Jason M. Baron, and William J. Lane
- Subjects
Pathology ,medicine.medical_specialty ,Process (engineering) ,pathology informatics curriculum ,informatics core content ,pathology informatics teaching ,Health Informatics ,lcsh:Computer applications to medicine. Medical informatics ,Pathology and Forensic Medicine ,informatics curriculum ,Health care ,lcsh:Pathology ,ComputingMilieux_COMPUTERSANDEDUCATION ,medicine ,Information system ,Curriculum ,Core Knowledge ,Medical education ,Clinical informatics curriculum ,Scope (project management) ,business.industry ,pathology informatics core content ,pathology informatics definition ,Computer Science Applications ,Workflow ,clinical informatics teaching ,Informatics ,pathology informatics ,lcsh:R858-859.7 ,Original Article ,business ,pathology informatics fellowship ,lcsh:RB1-214 - Abstract
Background: In 2007, our healthcare system established a clinical fellowship program in Pathology Informatics. In 2010 a core didactic course was implemented to supplement the fellowship research and operational rotations. In 2011, the course was enhanced by a formal, structured core curriculum and reading list. We present and discuss our rationale and development process for the Core Curriculum and the role it plays in our Pathology Informatics Fellowship Training Program. Materials and Methods: The Core Curriculum for Pathology Informatics was developed, and is maintained, through the combined efforts of our Pathology Informatics Fellows and Faculty. The curriculum was created with a three-tiered structure, consisting of divisions, topics, and subtopics. Primary (required) and suggested readings were selected for each subtopic in the curriculum and incorporated into a curated reading list, which is reviewed and maintained on a regular basis. Results: Our Core Curriculum is composed of four major divisions, 22 topics, and 92 subtopics that cover the wide breadth of Pathology Informatics. The four major divisions include: (1) Information Fundamentals, (2) Information Systems, (3) Workflow and Process, and (4) Governance and Management. A detailed, comprehensive reading list for the curriculum is presented in the Appendix to the manuscript and contains 570 total readings (current as of March 2012). Discussion: The adoption of a formal, core curriculum in a Pathology Informatics fellowship has significant impacts on both fellowship training and the general field of Pathology Informatics itself. For a fellowship, a core curriculum defines a basic, common scope of knowledge that the fellowship expects all of its graduates will know, while at the same time enhancing and broadening the traditional fellowship experience of research and operational rotations. For the field of Pathology Informatics itself, a core curriculum defines to the outside world, including departments, companies, and health systems considering hiring a pathology informatician, the core knowledge set expected of a person trained in the field and, more fundamentally, it helps to define the scope of the field within Pathology and healthcare in general.
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- 2012
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35. P2Y receptors play a critical role in epithelial cell communication and migration.
- Author
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Veronica E. Klepeis, Ilene Weinger, Elzbieta Kaczmarek, and Vickery Trinkaus‐Randall
- Published
- 2004
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36. Tri-nucleotide receptors play a critical role in epithelial cell wound repair
- Author
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Veronica E. Klepeis, Vickery Trinkaus-Randall, and Ilene Weinger
- Subjects
Integrin ,migration ,Article ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,Ca2+ imaging ,wound repair ,Epidermal growth factor ,Homologous desensitization ,medicine ,Receptor ,Molecular Biology ,030304 developmental biology ,Corneal epithelium ,0303 health sciences ,biology ,business.industry ,Cell migration ,Cell Biology ,Cell biology ,medicine.anatomical_structure ,epidermal growth factor ,Immunology ,biology.protein ,Signal transduction ,Wound healing ,business ,epithelium ,030217 neurology & neurosurgery - Abstract
The cornea plays a major role in the refraction of light to the retina. Therefore, the integrity and transparency of the corneal epithelium are critical to vision. Following injury, a combination of rapid signal transduction events and long-term cell migration are essential for wound closure. We have demonstrated previously that injury resulted in the release of nucleotides that induce the propagation of a Ca(2+) wave to neighboring cells. This suggests that nucleotides and their receptors are critical components of wound healing. Epidermal growth factor (EGF) and integrins also have been shown to play a role in injury. In this study, we demonstrate that pretreatment of cells with ATP and UTP inhibited the immediate wound response, while BzATP, ADP, and UDP did not affect this response. Tri-nucleotide pretreatment also reduced the EGF induced Ca(2+) response. Additionally, lower EC(50) concentrations of ATP and UTP triggered migration of cells that was enhanced further with EGF and was inhibited by the tripeptide, RGD. Results indicate that the desensitization induced by ATP and UTP was specific. While ADP and UDP cause a homologous desensitization of their own signal, they did not cause an inhibition of the wound response nor does BzATP. Neither Ca(2+) wave propagation nor cell migration occurred in response to beta,gamma-MeATP. Together these results lead us to hypothesize that corneal epithelial wound repair is mediated by both P2Y(2) and P2Y(4) receptors.
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37. A Role of Three-Dimensional (3D)-Reconstruction in the Classification of Lung Adenocarcinoma
- Author
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Maristela L. Onozato, Veronica E. Klepeis, Yukako Yagi, and Mari Mino-Kenudson
- Subjects
Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 ,Cytology ,QH573-671 - Abstract
Background: Three-dimensional (3D)-reconstruction from paraffin embedded sections has been considered laborious and time-consuming. However, the high-resolution images of large object areas and different fields of view obtained by 3D-reconstruction make one wonder whether it can add a new insight into lung adenocarcinoma, the most frequent histology type of lung cancer characterized by its morphological heterogeneity.
- Published
- 2012
- Full Text
- View/download PDF
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