26 results on '"Verena, Klämbt"'
Search Results
2. Exome sequencing identifies a likely causative variant in 53% of families with ciliopathy-related features on renal ultrasound after excluding NPHP1 deletions
- Author
-
Konstantin Deutsch, Verena Klämbt, Thomas M. Kitzler, Tilman Jobst-Schwan, Ronen Schneider, Florian Buerger, Steve Seltzsam, Sherif El Desoky, Jameela A. Kari, Farkhanda Hafeez, Maria Szczepańska, Loai A. Eid, Hazem S. Awad, Muna Al-Saffar, Neveen A. Soliman, Velibor Tasic, Camille Nicolas-Frank, Kirollos Yousef, Luca M. Schierbaum, Sophia Schneider, Abdul Halawi, Izzeldin Elmubarak, Katharina Lemberg, Shirlee Shril, Shrikant M. Mane, Nancy Rodig, and Friedhelm Hildebrandt
- Subjects
Medicine (General) ,R5-920 ,Genetics ,QH426-470 - Published
- 2024
- Full Text
- View/download PDF
3. Generation of Monogenic Candidate Genes for Human Nephrotic Syndrome Using 3 Independent Approaches
- Author
-
Verena Klämbt, Youying Mao, Ronen Schneider, Florian Buerger, Hanan Shamseldin, Ana C. Onuchic-Whitford, Konstantin Deutsch, Thomas M. Kitzler, Makiko Nakayama, Amar J. Majmundar, Nina Mann, Hannah Hugo, Eugen Widmeier, Weizhen Tan, Heidi L. Rehm, Shrikant Mane, Richard P. Lifton, Fowzan S. Alkuraya, Shirlee Shril, and Friedhelm Hildebrandt
- Subjects
pediatric nephrology ,proteinuria ,recessive disease ,whole-exome sequencing ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Introduction: Steroid-resistant nephrotic syndrome (SRNS) is the second most common cause of chronic kidney disease during childhood. Identification of 63 monogenic human genes has delineated 12 distinct pathogenic pathways. Methods: Here, we generated 2 independent sets of nephrotic syndrome (NS) candidate genes to augment the discovery of additional monogenic causes based on whole-exome sequencing (WES) data from 1382 families with NS. Results: We first identified 63 known monogenic causes of NS in mice from public databases and scientific publications, and 12 of these genes overlapped with the 63 known human monogenic SRNS genes. Second, we used a set of 64 genes that are regulated by the transcription factor Wilms tumor 1 (WT1), which causes SRNS if mutated. Thirteen of these WT1-regulated genes overlapped with human or murine NS genes. Finally, we overlapped these lists of murine and WT1 candidate genes with our list of 120 candidate genes generated from WES in 1382 NS families, to identify novel candidate genes for monogenic human SRNS. Using this approach, we identified 7 overlapping genes, of which 3 genes were shared by all datasets, including SYNPO. We show that loss-of-function of SYNPO leads to decreased CDC42 activity and reduced podocyte migration rate, both of which are rescued by overexpression of wild-type complementary DNA (cDNA), but not by cDNA representing the patient mutation. Conclusion: Thus, we identified 3 novel candidate genes for human SRNS using 3 independent, nonoverlapping hypotheses, and generated functional evidence for SYNPO as a novel potential monogenic cause of NS.
- Published
- 2021
- Full Text
- View/download PDF
4. Recessive Mutations in SYNPO2 as a Candidate of Monogenic Nephrotic Syndrome
- Author
-
Youying Mao, Ronen Schneider, Peter F.M. van der Ven, Marvin Assent, Keerthika Lohanadan, Verena Klämbt, Florian Buerger, Thomas M. Kitzler, Konstantin Deutsch, Makiko Nakayama, Amar J. Majmundar, Nina Mann, Tobias Hermle, Ana C. Onuchic-Whitford, Wei Zhou, Nandini Nagarajan Margam, Roy Duncan, Jonathan Marquez, Mustafa Khokha, Hanan M. Fathy, Jameela A. Kari, Sherif El Desoky, Loai A. Eid, Hazem Subhi Awad, Muna Al-Saffar, Shrikant Mane, Richard P. Lifton, Dieter O. Fürst, Shirlee Shril, and Friedhelm Hildebrandt
- Subjects
monogenic kidney disease ,nephrotic syndrome ,SYNPO2 ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Introduction: Most of the approximately 60 genes that if mutated cause steroid-resistant nephrotic syndrome (SRNS) are highly expressed in the glomerular podocyte, rendering SRNS a “podocytopathy.” Methods: We performed whole-exome sequencing (WES) in 1200 nephrotic syndrome (NS) patients. Results: We discovered homozygous truncating and homozygous missense mutation in SYNPO2 (synaptopodin-2) (p.Lys1124∗ and p.Ala1134Thr) in 2 patients with childhood-onset NS. We found SYNPO2 expression in both podocytes and mesangial cells; however, notably, immunofluorescence staining of adult human and rat kidney cryosections indicated that SYNPO2 is localized mainly in mesangial cells. Subcellular localization studies reveal that in these cells SYNPO2 partially co-localizes with α-actinin and filamin A−containing F-actin filaments. Upon transfection in mesangial cells or podocytes, EGFP-SYNPO2 co-localized with α-actinin-4, which gene is mutated in autosomal dominant SRNS in humans. SYNPO2 overexpression increases mesangial cell migration rate (MMR), whereas shRNA knockdown reduces MMR. Decreased MMR was rescued by transfection of wild-type mouse Synpo2 cDNA but only partially by cDNA representing mutations from the NS patients. The increased mesangial cell migration rate (MMR) by SYNPO2 overexpression was inhibited by ARP complex inhibitor CK666. SYNPO2 shRNA knockdown in podocytes decreased active Rac1, which was rescued by transfection of wild-type SYNPO2 cDNA but not by cDNA representing any of the 2 mutant variants. Conclusion: We show that SYNPO2 variants may lead to Rac1-ARP3 dysregulation, and may play a role in the pathogenesis of nephrotic syndrome.
- Published
- 2021
- Full Text
- View/download PDF
5. Genetic Variants in ARHGEF6 Cause Congenital Anomalies of the Kidneys and Urinary Tract in Humans, Mice, and Frogs
- Author
-
Verena Klämbt, Florian Buerger, Chunyan Wang, Thomas Naert, Karin Richter, Theresa Nauth, Anna-Carina Weiss, Tobias Sieckmann, Ethan Lai, Dervla M. Connaughton, Steve Seltzsam, Nina Mann, Amar J. Majmundar, Chen-Han W. Wu, Ana C. Onuchic-Whitford, Shirlee Shril, Sophia Schneider, Luca Schierbaum, Rufeng Dai, Mir Reza Bekheirnia, Marieke Joosten, Omer Shlomovitz, Asaf Vivante, Ehud Banne, Shrikant Mane, Richard P. Lifton, Karin M. Kirschner, Andreas Kispert, Georg Rosenberger, Klaus-Dieter Fischer, Soeren S. Lienkamp, Mirjam M.P. Zegers, and Friedhelm Hildebrandt
- Subjects
urinary tract ,ALPHA-PIX ,Women's cancers Radboud Institute for Molecular Life Sciences [Radboudumc 17] ,MUTATIONS ,Biology and Life Sciences ,General Medicine ,monogenic kidney disease ,REGULATES BRANCHING MORPHOGENESIS ,SEQUENCE ,pediatric ,All institutes and research themes of the Radboud University Medical Center ,Nephrology ,NUCLEOTIDE EXCHANGE FACTORS ,EXTRACELLULAR-MATRIX ,INBRED MOUSE ,INTEGRIN-LINKED KINASE ,PROTEIN NEPHRONECTIN ,MDCK CELL-CULTURE ,development ,CAKUT - Abstract
Background: About 40 disease genes have been described to date for isolated congenital anomalies of the kidneys and urinary tract (CAKUT), the most common cause of childhood chronic kidney disease. However, these genes account for only 20% of cases. ARHGEF6, a guanine nucleotide exchange factor that is implicated in such biologic processes as cell migration and focal adhesion, acts downstream of integrin linked kinase (ILK) and parvin proteins. A genetic variant of ILK that causes murine renal agenesis abrogates the interaction of ILK with a murine focal adhesion protein encoded by Parva, leading to CAKUT in mice with this variant. Methods: To identify novel genes that, when mutated, result in CAKUT, we performed exome sequencing in an international cohort of 1265 families with CAKUT. We also assessed the effects in vitro of wild-type and mutant ARHGEF6 proteins, as well as the effects of Arhgef6 deficiency in mouse and frog models. Results: We detected six different hemizygous variants in the gene ARHGEF6 (which is located on the X chromosome in humans) in eight individuals from six families with CAKUT. In kidney cells, overexpression of wild-type ARHGEF6—but not proband-derived mutant ARHGEF6— increased active levels of CDC42/RAC1, induced lamellipodia formation, and stimulated PARVAdependent cell spreading. ARHGEF6 mutant proteins showed loss of interaction with PARVA. Three-dimensional MDCK cell cultures expressing ARHGEF6 mutant proteins exhibited reduced lumen formation and polarity defects. Arhgef6 deficiency in mouse and frog models recapitulated features of human CAKUT. Conclusions: Deleterious variants in ARHGEF6 may cause dysregulation of integrin-parvinRAC1/CDC42 signaling, thereby leading to X-linked CAKUT.
- Published
- 2023
6. Mutations in PRDM15 Are a Novel Cause of Galloway-Mowat Syndrome
- Author
-
Ana C. Onuchic-Whitford, Florian Buerger, Slim Mzoughi, Denny Schanze, Beate Ermisch-Omran, Andreas R. Janecke, Susanne J. Kühl, Sven Schumann, Amy Kolb, Anja Werberger, Svjetlana Lovric, Shasha Shi, Verena Klämbt, Neveen A. Soliman, Youying Mao, Tilman Jobst-Schwan, Alma Kuechler, Ronen Schneider, Dagmar Wieczorek, Weizhen Tan, Jan Kadlec, Nina Mann, Franziska Kause, Amar J. Majmundar, Shrikant Mane, Kristina Holton, Ernesto Guccione, Thomas M. Kitzler, Martin Zenker, Amelie T. van der Ven, Makiko Nakayama, Thomas Lennert, Jia Rao, Oliver Gross, Michael J. Schmeisser, Eva Mildenberger, Martin Skalej, Daniela A. Braun, Shirlee Shril, Ernestine Treimer, Richard P. Lifton, Friedhelm Hildebrandt, and Michael Kühl
- Subjects
0301 basic medicine ,Genetics ,Kidney ,Medizin ,General Medicine ,Biology ,Disease gene identification ,medicine.disease ,Phenotype ,3. Good health ,Nephropathy ,Galloway Mowat syndrome ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,Nephrology ,Genetic linkage ,medicine ,Gene ,Nephrotic syndrome ,030217 neurology & neurosurgery - Abstract
Background Galloway-Mowat syndrome (GAMOS) is characterized by neurodevelopmental defects and a progressive nephropathy, which typically manifests as steroid-resistant nephrotic syndrome. The prognosis of GAMOS is poor, and the majority of children progress to renal failure. The discovery of monogenic causes of GAMOS has uncovered molecular pathways involved in the pathogenesis of disease. Methods Homozygosity mapping, whole-exome sequencing, and linkage analysis were used to identify mutations in four families with a GAMOS-like phenotype, and high-throughput PCR technology was applied to 91 individuals with GAMOS and 816 individuals with isolated nephrotic syndrome. In vitro and in vivo studies determined the functional significance of the mutations identified. Results Three biallelic variants of the transcriptional regulator PRDM15 were detected in six families with proteinuric kidney disease. Four families with a variant in the protein's zinc-finger (ZNF) domain have additional GAMOS-like features, including brain anomalies, cardiac defects, and skeletal defects. All variants destabilize the PRDM15 protein, and the ZNF variant additionally interferes with transcriptional activation. Morpholino oligonucleotide-mediated knockdown of Prdm15 in Xenopus embryos disrupted pronephric development. Human wild-type PRDM15 RNA rescued the disruption, but the three PRDM15 variants did not. Finally, CRISPR-mediated knockout of PRDM15 in human podocytes led to dysregulation of several renal developmental genes. Conclusions Variants in PRDM15 can cause either isolated nephrotic syndrome or a GAMOS-type syndrome on an allelic basis. PRDM15 regulates multiple developmental kidney genes, and is likely to play an essential role in renal development in humans.
- Published
- 2021
- Full Text
- View/download PDF
7. Generation of Monogenic Candidate Genes for Human Nephrotic Syndrome Using 3 Independent Approaches
- Author
-
Fowzan S. Alkuraya, Verena Klämbt, Youying Mao, Ana C. Onuchic-Whitford, Weizhen Tan, Richard P. Lifton, Florian Buerger, Amar J. Majmundar, Heidi L. Rehm, Nina Mann, Ronen Schneider, Konstantin Deutsch, Hannah Hugo, Makiko Nakayama, Thomas M. Kitzler, Shrikant Mane, Hanan E. Shamseldin, Shirlee Shril, Eugen Widmeier, and Friedhelm Hildebrandt
- Subjects
Candidate gene ,030232 urology & nephrology ,030204 cardiovascular system & hematology ,lcsh:RC870-923 ,medicine.disease_cause ,03 medical and health sciences ,0302 clinical medicine ,pediatric nephrology ,Complementary DNA ,Translational Research ,medicine ,whole-exome sequencing ,Gene ,Transcription factor ,Exome sequencing ,Genetics ,Mutation ,business.industry ,recessive disease ,Wilms' tumor ,lcsh:Diseases of the genitourinary system. Urology ,medicine.disease ,Nephrology ,Human genome ,proteinuria ,business - Abstract
Introduction Steroid-resistant nephrotic syndrome (SRNS) is the second most common cause of chronic kidney disease during childhood. Identification of 63 monogenic human genes has delineated 12 distinct pathogenic pathways. Methods Here, we generated 2 independent sets of nephrotic syndrome (NS) candidate genes to augment the discovery of additional monogenic causes based on whole-exome sequencing (WES) data from 1382 families with NS. Results We first identified 63 known monogenic causes of NS in mice from public databases and scientific publications, and 12 of these genes overlapped with the 63 known human monogenic SRNS genes. Second, we used a set of 64 genes that are regulated by the transcription factor Wilms tumor 1 (WT1), which causes SRNS if mutated. Thirteen of these WT1-regulated genes overlapped with human or murine NS genes. Finally, we overlapped these lists of murine and WT1 candidate genes with our list of 120 candidate genes generated from WES in 1382 NS families, to identify novel candidate genes for monogenic human SRNS. Using this approach, we identified 7 overlapping genes, of which 3 genes were shared by all datasets, including SYNPO. We show that loss-of-function of SYNPO leads to decreased CDC42 activity and reduced podocyte migration rate, both of which are rescued by overexpression of wild-type complementary DNA (cDNA), but not by cDNA representing the patient mutation. Conclusion Thus, we identified 3 novel candidate genes for human SRNS using 3 independent, nonoverlapping hypotheses, and generated functional evidence for SYNPO as a novel potential monogenic cause of NS., Graphical abstract
- Published
- 2021
- Full Text
- View/download PDF
8. De novo TRIM8 variants impair its protein localization to nuclear bodies and cause developmental delay, epilepsy, and focal segmental glomerulosclerosis
- Author
-
Verena Klämbt, Youying Mao, Vimla Aggarwal, Arang Kim, Friedhelm Hildebrandt, Mohamad A. Mikati, Vandana Shashi, Anne H. O’Donnell-Luria, Vaidehi Jobanputra, Jeremiah Martino, Vivette D. D'Agati, Minxian Wang, Marcus R. Benz, Shoji Yano, Janine Altmüller, Ali G. Gharavi, Florian Buerger, Enrico Fiaccadori, Richard P. Lifton, Bodo B. Beck, Amy Kolb, Mordi Muorah, David Goldstein, Nina Mann, Martin R. Pollak, Dina Ahram, Heidi Cope, Gian Marco Ghiggeri, Jillian S. Parboosingh, Asmaa S. AbuMaziad, Kamal Khan, Ana C. Onuchic-Whitford, Louise Bier, Emma Pierce-Hoffman, Jonathan E. Zuckerman, Shrikant Mane, Moin A. Saleem, Amar J. Majmundar, Heidi L. Rehm, Ora Yadin, Erin L. Heinzen, Gina Y. Jin, Christelle Moufawad El Achkar, Konstantin Deutsch, Julia Hoefele, Ania Koziell, Gianluca Caridi, Talha Gunduz, Agnieszka Bierzynska, Korbinian M. Riedhammer, Monica Bodria, Ronen Schneider, Julian A. Martinez-Agosto, Thomas M. Kitzler, Shirlee Shril, Ulrike John-Kroegel, Howard Trachtman, Adele Mitrotti, Eleanor G. Seaby, Amanda V. Tyndall, Isabella Pisani, Patricia L. Weng, Tze Y Lim, A. Micheil Innes, John Musgrove, Simone Sanna-Cherchi, and Erica E. Davis
- Subjects
Adult ,Male ,0301 basic medicine ,Proband ,medicine.medical_specialty ,Nephrotic Syndrome ,Developmental Disabilities ,030232 urology & nephrology ,Neurogenetics ,Nerve Tissue Proteins ,Biology ,Kidney ,Cell Line ,Mice ,03 medical and health sciences ,Exon ,0302 clinical medicine ,Focal segmental glomerulosclerosis ,Report ,Exome Sequencing ,Genetics ,medicine ,Animals ,Humans ,Child ,Exome ,Genetics (clinical) ,Exome sequencing ,Epilepsy ,Glomerulosclerosis, Focal Segmental ,Podocytes ,medicine.disease ,3. Good health ,Phenotype ,030104 developmental biology ,Codon, Nonsense ,Child, Preschool ,Mutation ,Medical genetics ,Female ,Intranuclear Space ,Carrier Proteins ,Nephrotic syndrome - Abstract
Focal segmental glomerulosclerosis (FSGS) is the main pathology underlying steroid-resistant nephrotic syndrome (SRNS) and a leading cause of chronic kidney disease. Monogenic forms of pediatric SRNS are predominantly caused by recessive mutations, while the contribution of de novo variants (DNVs) to this trait is poorly understood. Using exome sequencing (ES) in a proband with FSGS/SRNS, developmental delay, and epilepsy, we discovered a nonsense DNV in TRIM8, which encodes the E3 ubiquitin ligase tripartite motif containing 8. To establish whether TRIM8 variants represent a cause of FSGS, we aggregated exome/genome-sequencing data for 2,501 pediatric FSGS/SRNS-affected individuals and 48,556 control subjects, detecting eight heterozygous TRIM8 truncating variants in affected subjects but none in control subjects (p = 3.28 × 10(−11)). In all six cases with available parental DNA, we demonstrated de novo inheritance (p = 2.21 × 10(−15)). Reverse phenotyping revealed neurodevelopmental disease in all eight families. We next analyzed ES from 9,067 individuals with epilepsy, yielding three additional families with truncating TRIM8 variants. Clinical review revealed FSGS in all. All TRIM8 variants cause protein truncation clustering within the last exon between residues 390 and 487 of the 551 amino acid protein, indicating a correlation between this syndrome and loss of the TRIM8 C-terminal region. Wild-type TRIM8 overexpressed in immortalized human podocytes and neuronal cells localized to nuclear bodies, while constructs harboring patient-specific variants mislocalized diffusely to the nucleoplasm. Co-localization studies demonstrated that Gemini and Cajal bodies frequently abut a TRIM8 nuclear body. Truncating TRIM8 DNVs cause a neuro-renal syndrome via aberrant TRIM8 localization, implicating nuclear bodies in FSGS and developmental brain disease.
- Published
- 2021
- Full Text
- View/download PDF
9. Recessive Mutations in SYNPO2 as a Candidate of Monogenic Nephrotic Syndrome
- Author
-
Shirlee Shril, Marvin Assent, Verena Klämbt, Amar J. Majmundar, Konstantin Deutsch, Nandini N. Margam, Youying Mao, Richard P. Lifton, Dieter O. Fürst, Jameela A. Kari, Tobias Hermle, Keerthika Lohanadan, Mustafa K. Khokha, Thomas M. Kitzler, Hanan M. Fathy, Muna Al-Saffar, Nina Mann, Wei Zhou, Florian Buerger, Ana C. Onuchic-Whitford, Peter F.M. van der Ven, Ronen Schneider, Friedhelm Hildebrandt, Shrikant Mane, Jonathan Marquez, Sherif El Desoky, Loai A. Eid, Hazem S. Awad, Makiko Nakayama, and Roy Duncan
- Subjects
Mesangial cell ,business.industry ,nephrotic syndrome ,Mutant ,030232 urology & nephrology ,Transfection ,030204 cardiovascular system & hematology ,monogenic kidney disease ,medicine.disease ,Filamin ,lcsh:Diseases of the genitourinary system. Urology ,lcsh:RC870-923 ,Molecular biology ,Pathogenesis ,SYNPO2 ,03 medical and health sciences ,0302 clinical medicine ,Nephrology ,Complementary DNA ,Translational Research ,Missense mutation ,Medicine ,business ,Nephrotic syndrome - Abstract
Introduction Most of the approximately 60 genes that if mutated cause steroid-resistant nephrotic syndrome (SRNS) are highly expressed in the glomerular podocyte, rendering SRNS a “podocytopathy.” Methods We performed whole-exome sequencing (WES) in 1200 nephrotic syndrome (NS) patients. Results We discovered homozygous truncating and homozygous missense mutation in SYNPO2 (synaptopodin-2) (p.Lys1124∗ and p.Ala1134Thr) in 2 patients with childhood-onset NS. We found SYNPO2 expression in both podocytes and mesangial cells; however, notably, immunofluorescence staining of adult human and rat kidney cryosections indicated that SYNPO2 is localized mainly in mesangial cells. Subcellular localization studies reveal that in these cells SYNPO2 partially co-localizes with α-actinin and filamin A−containing F-actin filaments. Upon transfection in mesangial cells or podocytes, EGFP-SYNPO2 co-localized with α-actinin-4, which gene is mutated in autosomal dominant SRNS in humans. SYNPO2 overexpression increases mesangial cell migration rate (MMR), whereas shRNA knockdown reduces MMR. Decreased MMR was rescued by transfection of wild-type mouse Synpo2 cDNA but only partially by cDNA representing mutations from the NS patients. The increased mesangial cell migration rate (MMR) by SYNPO2 overexpression was inhibited by ARP complex inhibitor CK666. SYNPO2 shRNA knockdown in podocytes decreased active Rac1, which was rescued by transfection of wild-type SYNPO2 cDNA but not by cDNA representing any of the 2 mutant variants. Conclusion We show that SYNPO2 variants may lead to Rac1-ARP3 dysregulation, and may play a role in the pathogenesis of nephrotic syndrome.
- Published
- 2020
10. Mutations in transcription factor CP2-like 1 may cause a novel syndrome with distal renal tubulopathy in humans
- Author
-
Kai M. Schmidt-Ott, Amar J. Majmundar, Friedhelm Hildebrandt, Thomas M. Kitzler, Florian Buerger, Nina Mann, Maike Getwan, Sherif El Desoky, Michael M. Kaminski, Konstantin Deutsch, Tian Shen, Ana C. Onuchic-Whitford, Verena Klämbt, Jameela A. Kari, Youying Mao, Shirlee Shril, Soeren S. Lienkamp, Mohamed A. Shalaby, Max Werth, Jonathan Barasch, and University of Zurich
- Subjects
0301 basic medicine ,Epithelial-Mesenchymal Transition ,10017 Institute of Anatomy ,030232 urology & nephrology ,Kidney development ,610 Medicine & health ,urologic and male genital diseases ,medicine.disease_cause ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Tubulopathy ,Exome Sequencing ,Animals ,Humans ,Medicine ,Child ,Exome sequencing ,Mice, Knockout ,Transplantation ,Mutation ,Kidney ,business.industry ,medicine.disease ,Hypotonia ,Rats ,3. Good health ,DNA-Binding Proteins ,Repressor Proteins ,HEK293 Cells ,030104 developmental biology ,medicine.anatomical_structure ,Nephrology ,Cancer research ,570 Life sciences ,biology ,Female ,Kidney Diseases ,ORIGINAL ARTICLES ,Single-Cell Analysis ,medicine.symptom ,business ,Transcription Factor Gene ,Transcription Factors ,Kidney disease - Abstract
Background An underlying monogenic cause of early-onset chronic kidney disease (CKD) can be detected in ∼20% of individuals. For many etiologies of CKD manifesting before 25 years of age, >200 monogenic causative genes have been identified to date, leading to the elucidation of mechanisms of renal pathogenesis. Methods In 51 families with echogenic kidneys and CKD, we performed whole-exome sequencing to identify novel monogenic causes of CKD. Results We discovered a homozygous truncating mutation in the transcription factor gene transcription factor CP2-like 1 (TFCP2L1) in an Arabic patient of consanguineous descent. The patient developed CKD by the age of 2 months and had episodes of severe hypochloremic, hyponatremic and hypokalemic alkalosis, seizures, developmental delay and hypotonia together with cataracts. We found that TFCP2L1 was localized throughout kidney development particularly in the distal nephron. Interestingly, TFCP2L1 induced the growth and development of renal tubules from rat mesenchymal cells. Conversely, the deletion of TFCP2L1 in mice was previously shown to lead to reduced expression of renal cell markers including ion transporters and cell identity proteins expressed in different segments of the distal nephron. TFCP2L1 localized to the nucleus in HEK293T cells only upon coexpression with its paralog upstream-binding protein 1 (UBP1). A TFCP2L1 mutant complementary DNA (cDNA) clone that represented the patient’s mutation failed to form homo- and heterodimers with UBP1, an essential step for its transcriptional activity. Conclusion Here, we identified a loss-of-function TFCP2L1 mutation as a potential novel cause of CKD in childhood accompanied by a salt-losing tubulopathy.
- Published
- 2020
- Full Text
- View/download PDF
11. Different approaches to long-term treatment of aHUS due to MCP mutations: a multicenter analysis
- Author
-
Karsten Häffner, Heiko Billing, Jens König, Bärbel Lange Sperandio, Matthias Hansen, Martin Bald, Imke Hennies, Tobias Vinke, Christopher Gerken, Martin Pohl, Charlotte Gimpel, Verena Klämbt, Carmen Montoya, Sebastian Loos, and Martin Kirschstein
- Subjects
0301 basic medicine ,Nephrology ,medicine.medical_specialty ,Atypical hemolytic uremic syndrome ,Complement ,030232 urology & nephrology ,Discontinuation ,03 medical and health sciences ,0302 clinical medicine ,Maintenance therapy ,Genetic cause ,Internal medicine ,Membrane cofactor protein ,medicine ,Children ,CD46 ,business.industry ,Microangiopathy ,Eculizumab ,medicine.disease ,030104 developmental biology ,Pediatrics, Perinatology and Child Health ,Original Article ,Age of onset ,business ,medicine.drug - Abstract
Background Atypical hemolytic uremic syndrome (aHUS) is a rare, life-threatening microangiopathy, frequently causing kidney failure. Inhibition of the terminal complement complex with eculizumab is the only licensed treatment but mostly requires long-term administration and risks severe side effects. The underlying genetic cause of aHUS is thought to influence the severity of initial and recurring episodes, with milder courses in patients with mutations in membrane cofactor protein (MCP). Methods Twenty pediatric cases of aHUS due to isolated heterozygous MCP mutations were reported from 12 German pediatric nephrology centers to describe initial presentation, timing of relapses, treatment, and kidney outcome. Results The median age of onset was 4.6 years, with a female to male ratio of 1:3. Without eculizumab maintenance therapy, 50% (9/18) of the patients experienced a first relapse after a median period of 3.8 years. Kaplan-Meier analysis showed a relapse-free survival of 93% at 1 year. Four patients received eculizumab long-term treatment, while 3 patients received short courses. We could not show a benefit from complement blockade therapy on long term kidney function, independent of short-term or long-term treatment. To prevent 1 relapse with eculizumab, the theoretical number-needed-to-treat (NNT) was 15 for the first year and 3 for the first 5 years after initial presentation. Conclusion Our study shows that heterozygous MCP mutations cause aHUS with a risk of first relapse of about 10% per year, resulting in large NNTs for prevention of relapses with eculizumab. More studies are needed to define an optimal treatment schedule for patients with MCP mutations to minimize the risks of the disease and treatment.
- Published
- 2020
- Full Text
- View/download PDF
12. Whole exome sequencing identified ATP6V1C2 as a novel candidate gene for recessive distal renal tubular acidosis
- Author
-
Tilman Jobst-Schwan, Marcella Greco, Patricia M. Kane, Michelle A. Baum, Verena Klämbt, Shrikant Mane, Seema Hashmi, Seth L. Alper, Jutta Gellermann, Richard P. Lifton, Amar J. Majmundar, Florian Buerger, John F. Heneghan, Friedhelm Hildebrandt, Guido F. Laube, Shirlee Shril, Francesco Emma, Farkhanda Hafeez, Hanan M. Fathy, Rezan Topaloglu, Isabel Ottlewski, Martin Pohl, Danko Milosevic, Boris E. Shmukler, and Maureen Tarsio
- Subjects
0301 basic medicine ,Vacuolar Proton-Translocating ATPases ,Candidate gene ,Pathology ,medicine.medical_specialty ,DNA Mutational Analysis ,030232 urology & nephrology ,medicine.disease_cause ,Renal tubular acidosis ,03 medical and health sciences ,0302 clinical medicine ,Renal tubular dysfunction ,Distal renal tubular acidosis ,Anion Exchange Protein 1, Erythrocyte ,Exome Sequencing ,medicine ,Humans ,Chloride-Bicarbonate Antiporters ,Child ,Exome sequencing ,Kidney ,Mutation ,business.industry ,Forkhead Transcription Factors ,Acidosis, Renal Tubular ,medicine.disease ,030104 developmental biology ,medicine.anatomical_structure ,FOXI1 ,Nephrology ,business - Abstract
Distal renal tubular acidosis is a rare renal tubular disorder characterized by hyperchloremic metabolic acidosis and impaired urinary acidification. Mutations in three genes (ATP6V0A4, ATP6V1B1 and SLC4A1) constitute a monogenic causation in 58-70% of familial cases of distal renal tubular acidosis. Recently, mutations in FOXI1 have been identified as an additional cause. Therefore, we hypothesized that further monogenic causes of distal renal tubular acidosis remain to be discovered. Panel sequencing and/or whole exome sequencing was performed in a cohort of 17 families with 19 affected individuals with pediatric onset distal renal tubular acidosis. A causative mutation was detected in one of the three "classical" known distal renal tubular acidosis genes in 10 of 17 families. The seven unsolved families were then subjected to candidate whole exome sequencing analysis. Potential disease causing mutations in three genes were detected: ATP6V1C2, which encodes another kidney specific subunit of the V-type proton ATPase (1 family); WDR72 (2 families), previously implicated in V-ATPase trafficking in cells; and SLC4A2 (1 family), a paralog of the known distal renal tubular acidosis gene SLC4A1. Two of these mutations were assessed for deleteriousness through functional studies. Yeast growth assays for ATP6V1C2 revealed loss-of-function for the patient mutation, strongly supporting ATP6V1C2 as a novel distal renal tubular acidosis gene. Thus, we provided a molecular diagnosis in a known distal renal tubular acidosis gene in 10 of 17 families (59%) with this disease, identified mutations in ATP6V1C2 as a novel human candidate gene, and provided further evidence for phenotypic expansion in WDR72 mutations from amelogenesis imperfecta to distal renal tubular acidosis.
- Published
- 2020
- Full Text
- View/download PDF
13. Mutations of the Transcriptional Corepressor ZMYM2 Cause Syndromic Urinary Tract Malformations
- Author
-
Danielle J. Owen, David FitzPatrick, Nina Mann, Stuart B. Bauer, Ilona Krey, Heather C Mefford, Jacob Zyskind, Roger Fick, Ana C. Onuchic-Whitford, Floor A. M. Duijkers, Etienne Coyaud, Simon E. Fisher, Juliann M. Savatt, Richard P. Lifton, Isabel Ottlewski, Amelie T. van der Ven, Peter J. Hulick, Nancy Rodig, Michelle A. Baum, Marielle Alders, Elysa J. Marco, Konrad Platzer, Ghaleb Daouk, Hadas Ityel, Eva H. Brilstra, Ian A. Glass, Heiko Reutter, Adda L. Graham-Paquin, Makiko Nakayama, Michael A. J. Ferguson, Amy Kolb, Weining Lu, Florian Buerger, Prabha Senguttuvan, Marcia Ferguson, Ronen Schneider, Isabelle Thiffault, Hila Milo Rasouly, Verena Klämbt, Tobias Bartolomaeus, Evan Chen, Mao Youying, Amar J. Majmundar, Jia Rao, Carrie Costin, Dina Ahram, Ali G. Gharavi, Lot Snijders Blok, Avram Z. Traum, Franziska Kause, Konstantin Deutsch, Arianna Vino, Dervla M. Connaughton, Antonie D. Kline, Deborah R. Stein, Daanya Salmanullah, Maxime Bouchard, Estelle M.N. Laurent, Audrey Squire, Daniel G. MacArthur, Kristen M. Laricchia, Asaf Vivante, Thomas M. Kitzler, Jonathan St-Germain, Brian Raught, Heidi L. Rehm, Ellen van Binsbergen, Chen Han Wilfred Wu, Caroline M. Kolvenbach, Monkol Lek, Selvin Kumar, Jing Chen, Mustafa K. Khokha, Ankana Daga, Hong Xu, Andrew D. Sharrocks, N. V. Shcherbakova, Simone Sanna-Cherchi, Inna S. Povolotskaya, Tze Y Lim, Johanna M. Rieke, Katrina M. Dipple, Gabriel C. Dworschak, Michael J. Somers, Tobias Hermle, Stefan Kohl, Steve Seltzsam, Victoria Y. Voinova, Shirlee Shril, Ingrid M. Wentzensen, Daw Yang Hwang, Velibor Tasic, Shrikant Mane, Jonathan Marquez, Friedhelm Hildebrandt, Rufeng Dai, Paulien A Terhal, Loai A. Eid, Thomas D. Challman, Boston Children's Hospital, Harvard Medical School [Boston] (HMS), University of Western Ontario (UWO), Fudan University [Shanghai], University of Manchester [Manchester], Yale University [New Haven], McGill University = Université McGill [Montréal, Canada], Protéomique, Réponse Inflammatoire, Spectrométrie de Masse (PRISM) - U 1192 (PRISM), Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Lille-Centre Hospitalier Régional Universitaire [Lille] (CHRU Lille), University Health Network, University of Toronto, Max Planck Institute for Psycholinguistics, Max-Planck-Gesellschaft, Donders Institute for Brain, Cognition and Behaviour, Radboud University [Nijmegen], Radboud University Medical Center [Nijmegen], Brigham & Women’s Hospital [Boston] (BWH), Tel Aviv University (TAU), University of Amsterdam [Amsterdam] (UvA), Universität Leipzig, University Medical Center [Utrecht], Geisinger Autism & Developmental Medicine Institute [Danville, PA, USA] (ADMI), GeneDx [Gaithersburg, MD, USA], University of Akron, University of Washington [Seattle], William Harvey Research Institute, Barts and the London Medical School, University of Edinburgh, Mary Bridge Childrens Hospital [Tacoma, WA, USA], NorthShore University HealthSystem [Evanston, IL, USA], Institute of Child Health [Tamil Nadu, India] (Hospital for Children), Boston University [Boston] (BU), Cortica Healthcare [San Rafael, CA, USA], Moscow Medical Institute of Health Ministry [Moscow, Russia], Pirogov Russian National Research Medical University, Dr. Mehta's Hospitals [Tamil Nadu, India], Seattle Children’s Hospital, Children's Mercy Hospital [Kansas City], University of Missouri [Kansas City] (UMKC), University of Missouri System, Neuro Spinal Hospital [Dubai, UAE], University Children’s Hospital [Skopje, Macédoine], Columbia University [New York], University Hospital Bonn, Massachusetts General Hospital [Boston], Rockefeller University [New York], Yale School of Medicine [New Haven, Connecticut] (YSM), Human Genetics, ARD - Amsterdam Reproduction and Development, ACS - Pulmonary hypertension & thrombosis, Université de Lille-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre Hospitalier Régional Universitaire [Lille] (CHRU Lille), Radboud university [Nijmegen], Tel Aviv University [Tel Aviv], Universität Leipzig [Leipzig], Pirogov Russian National Research Medical University [Moscow, Russia], Yale University School of Medicine, INSERM, Université de Lille, Protéomique, Réponse Inflammatoire, Spectrométrie de Masse (PRISM) - U1192, and SALZET, Michel
- Subjects
0301 basic medicine ,Male ,Morpholino ,Xenopus ,030232 urology & nephrology ,Endogenous retrovirus ,[SDV.BC.BC]Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC] ,transcription regulator ,Interactome ,Epigenesis, Genetic ,Morpholinos ,Pathogenesis ,ZNF198 ,Mice ,0302 clinical medicine ,whole-exome sequencing ,Child ,Urinary Tract ,Genetics (clinical) ,Exome sequencing ,Genetics ,Mice, Knockout ,ZMYM2 ,genetic kidney disease ,Forkhead Transcription Factors ,FOXP1 ,3. Good health ,Pedigree ,extra-renal features ,DNA-Binding Proteins ,Child, Preschool ,Larva ,syndromic CAKUT ,Female ,Protein Binding ,Neuroinformatics ,Heterozygote ,Biology ,Article ,Amphibian Proteins ,03 medical and health sciences ,Exome Sequencing ,[SDV.BC.BC] Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC] ,Gene silencing ,Animals ,Humans ,Family ,Transcription factor ,FIM ,Infant ,Repressor Proteins ,030104 developmental biology ,genomic analysis ,Case-Control Studies ,Urogenital Abnormalities ,congenital anomalies of the kidney and urinary tract ,Mutation ,Transcription Factors - Abstract
International audience; Congenital anomalies of the kidney and urinary tract (CAKUT) constitute one of the most frequent birth defects and represent the most common cause of chronic kidney disease in the first three decades of life. Despite the discovery of dozens of monogenic causes of CA-KUT, most pathogenic pathways remain elusive. We performed whole-exome sequencing (WES) in 551 individuals with CAKUT and identified a heterozygous de novo stop-gain variant in ZMYM2 in two different families with CAKUT. Through collaboration, we identified in total 14 different heterozygous loss-of-function mutations in ZMYM2 in 15 unrelated families. Most mutations occurred de novo, indicating possible interference with reproductive function. Human disease features are replicated in X. tropicalis larvae with morpho-lino knockdowns, in which expression of truncated ZMYM2 proteins, based on individual mutations, failed to rescue renal and cranio-facial defects. Moreover, heterozygous Zmym2-deficient mice recapitulated features of CAKUT with high penetrance. The ZMYM2 protein is a component of a transcriptional corepressor complex recently linked to the silencing of developmentally regulated endoge-nous retrovirus elements. Using protein-protein interaction assays, we show that ZMYM2 interacts with additional epigenetic silencing complexes, as well as confirming that it binds to FOXP1, a transcription factor that has also been linked to CAKUT. In summary, our findings establish that loss-of-function mutations of ZMYM2, and potentially that of other proteins in its interactome, as causes of human CAKUT, offering new routes for studying the pathogenesis of the disorder.
- Published
- 2020
- Full Text
- View/download PDF
14. CAKUT and Autonomic Dysfunction Caused by Acetylcholine Receptor Mutations
- Author
-
Toshimitsu Kawate, Amar J. Majmundar, Dervla M. Connaughton, Amelie T. van der Ven, Rufeng Dai, Jameela A. Kari, Caroline M. Kolvenbach, Madeleine J. Tooley, Mohamed A. Shalaby, Ryan E. Hibbs, Erik Henze, Shirlee Shril, Jing Chen, Sherif El Desoky, Nina Mann, Stuart B. Bauer, Lucy Bownass, Hadas Ityel, Richard P. Lifton, Makiko Nakayama, Velibor Tasic, Shrikant Mane, Chen Han W. Wu, Jonathan M. Beckel, Heiko Reutter, Verena Klämbt, Sian Ellard, Weiqun Yu, Franziska Kause, Friedhelm Hildebrandt, Elisa De Franco, Anant Gharpure, and Richard S. Lee
- Subjects
Adult ,Male ,0301 basic medicine ,medicine.medical_specialty ,Urinary system ,030232 urology & nephrology ,Receptors, Nicotinic ,Kidney ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Report ,Internal medicine ,Genetics ,medicine ,Humans ,Urinary Tract ,Genetics (clinical) ,Upper urinary tract ,Acetylcholine receptor ,business.industry ,Dysautonomia ,Prognosis ,medicine.disease ,Pedigree ,Nicotinic acetylcholine receptor ,030104 developmental biology ,Endocrinology ,Nicotinic agonist ,Autonomic Nervous System Diseases ,Urogenital Abnormalities ,Mutation ,Female ,medicine.symptom ,business ,Urinary tract obstruction ,Acetylcholine ,Follow-Up Studies ,medicine.drug - Abstract
Congenital anomalies of the kidney and urinary tract (CAKUT) are the most common cause of chronic kidney disease in the first three decades of life, and in utero obstruction to urine flow is a frequent cause of secondary upper urinary tract malformations. Here, using whole-exome sequencing, we identified three different biallelic mutations in CHRNA3, which encodes the α3 subunit of the nicotinic acetylcholine receptor, in five affected individuals from three unrelated families with functional lower urinary tract obstruction and secondary CAKUT. Four individuals from two families have additional dysautonomic features, including impaired pupillary light reflexes. Functional studies in vitro demonstrated that the mutant nicotinic acetylcholine receptors were unable to generate current following stimulation with acetylcholine. Moreover, the truncating mutations p.Thr337Asnfs(∗)81 and p.Ser340(∗) led to impaired plasma membrane localization of CHRNA3. Although the importance of acetylcholine signaling in normal bladder function has been recognized, we demonstrate for the first time that mutations in CHRNA3 can cause bladder dysfunction, urinary tract malformations, and dysautonomia. These data point to a pathophysiologic sequence by which monogenic mutations in genes that regulate bladder innervation may secondarily cause CAKUT.
- Published
- 2019
- Full Text
- View/download PDF
15. Reverse phenotyping facilitates disease allele calling in exome sequencing of patients with CAKUT
- Author
-
Luca Schierbaum, Amar J. Majmundar, Friedhelm Hildebrandt, Hanan M. Fathy, Avram Z. Traum, Bixia Zheng, Ankana Daga, Sophia Schneider, Florian Buerger, Konstantin Deutsch, Mohammed Shalaby, Steve Seltzsam, Rufeng Dai, Caroline M. Kolvenbach, Jameela A. Kari, Daanya Salmanullah, Michelle A. Baum, Ronen Schneider, Verena Klämbt, Youying Mao, Nancy Rodig, Kirollos Yousef, Deborah R. Stein, Loai A. Eid, Michael A. J. Ferguson, Neveen A. Soliman, Isabel Ottlewski, Franziska Kause, Makiko Nakayama, Sherif El Desoky, Ethan W. Lai, Nina Mann, Hazem S. Awad, Stuart B. Bauer, Michael J. Somers, Dalia Pantel, Velibor Tasic, Ana C. Onuchic-Whitford, Shrikant Mane, Chunyan Wang, Dervla M. Connaughton, Chen-Han Wilfred Wu, Ghaleb Daouk, Shirlee Shril, and Camille Nicolas-Frank
- Subjects
Genetics ,Vesico-Ureteral Reflux ,business.industry ,Disease ,medicine.disease ,Kidney ,Phenotype ,Article ,Clinical diagnosis ,Urogenital Abnormalities ,medicine ,Humans ,Exome ,Allele ,business ,Urinary Tract ,Gene ,Clinical syndrome ,Genetics (clinical) ,Exome sequencing ,Alleles ,Kidney disease - Abstract
Purpose Congenital anomalies of the kidneys and urinary tract (CAKUT) constitute the leading cause of chronic kidney disease in children. In total, 174 monogenic causes of isolated or syndromic CAKUT are known. However, syndromic features may be overlooked when the initial clinical diagnosis of CAKUT is made. We hypothesized that the yield of a molecular genetic diagnosis by exome sequencing (ES) can be increased by applying reverse phenotyping, by re-examining the case for signs/symptoms of the suspected clinical syndrome that results from the genetic variant detected by ES. Methods We conducted ES in an international cohort of 731 unrelated families with CAKUT. We evaluated ES data for variants in 174 genes, in which variants are known to cause isolated or syndromic CAKUT. In cases in which ES suggested a previously unreported syndromic phenotype, we conducted reverse phenotyping. Results In 83 of 731 (11.4%) families, we detected a likely CAKUT-causing genetic variant consistent with an isolated or syndromic CAKUT phenotype. In 19 of these 83 families (22.9%), reverse phenotyping yielded syndromic clinical findings, thereby strengthening the genotype–phenotype correlation. Conclusion We conclude that employing reverse phenotyping in the evaluation of syndromic CAKUT genes by ES provides an important tool to facilitate molecular genetic diagnostics in CAKUT.
- Published
- 2021
16. Recessive NOS1AP variants impair actin remodeling and cause glomerulopathy in humans and mice
- Author
-
Amar J. Majmundar, Daniela A. Braun, Verena Klämbt, Youying Mao, Ali Amar, Ihsan Ullah, Florian Buerger, Caroline M. Kolvenbach, Neveen A. Soliman, Ker Sin Tan, Ana C. Onuchic-Whitford, Rufeng Dai, Friedhelm Hildebrandt, Shirlee Shril, Julie D. Forman-Kay, Chin Heng Chen, Marwa M. Nabhan, Andreas Heilos, Daanya Salmanullah, Richard P. Lifton, Kaitlyn Eddy, Konstantin Deutsch, Michelle Scurr, Renate Kain, Isabel Ottlewski, Melissa H. Little, Ronen Schneider, Thomas A. Forbes, Nina Mann, Makiko Nakayama, Eugen Widmeier, Seymour Rosen, Sara E. Howden, Amy Kolb, Thomas M. Kitzler, Shrikant Mane, Ethan W. Lai, Mickael Krzeminski, and Christoph Aufricht
- Subjects
0303 health sciences ,Gene knockdown ,Multidisciplinary ,Podosome ,030232 urology & nephrology ,Actin remodeling ,Glomerulosclerosis ,macromolecular substances ,Biology ,medicine.disease ,3. Good health ,Cell biology ,Podocyte ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,Glomerulopathy ,medicine ,Filopodia ,Exome sequencing ,030304 developmental biology - Abstract
Nephrotic syndrome (NS) is a leading cause of chronic kidney disease. We found recessive NOS1AP variants in two families with early-onset NS by exome sequencing. Overexpression of wild-type (WT) NOS1AP, but not cDNA constructs bearing patient variants, increased active CDC42 and promoted filopodia and podosome formation. Pharmacologic inhibition of CDC42 or its effectors, formin proteins, reduced NOS1AP-induced filopodia formation. NOS1AP knockdown reduced podocyte migration rate (PMR), which was rescued by overexpression of WT Nos1ap but not by constructs bearing patient variants. PMR in NOS1AP knockdown podocytes was also rescued by constitutively active CDC42Q61L or the formin DIAPH3 Modeling a NOS1AP patient variant in knock-in human kidney organoids revealed malformed glomeruli with increased apoptosis. Nos1apEx3-/Ex3- mice recapitulated the human phenotype, exhibiting proteinuria, foot process effacement, and glomerulosclerosis. These findings demonstrate that recessive NOS1AP variants impair CDC42/DIAPH-dependent actin remodeling, cause aberrant organoid glomerulogenesis, and lead to a glomerulopathy in humans and mice.
- Published
- 2021
- Full Text
- View/download PDF
17. Multisystem inflammation and susceptibility to viral infections in human ZNFX1 deficiency
- Author
-
Christian Staufner, Dominic Lenz, Michael Huber, Ulrich Baumann, Lennart Opitz, Neveen A. Soliman, Raif S. Geha, Hundeep Kaur, Christian Klemann, Verena Klämbt, Sebastian Hiller, Matias Wagner, Jana Pachlopnik Schmid, Janet Chou, Andreas Klein-Franke, Danil Koovely, Chris Fraser, Karsten Häffner, Tommaso Marchetti, Michael T. Gabbett, Heike Olbrich, Christina Kessler, Matthias Griese, Tayfun Güngör, Michael F. Buckley, Veronika Haunerdinger, Craig D. Platt, George Elakis, Sabrina Weeks, Martin Schwemmle, Stefano Vavassori, Friedhelm Hildebrandt, Seraina Prader, Guido F. Laube, Megan Elkins, Laura Faletti, Abduarahman Almutairi, Patrick Frosk, Charlotte Gimpel, Luise A. Schuch, Maria Elena Maccari, Xianfei Gao, Pascal Joset, Stephan Ehl, Maria Forstner, Raimund Kottke, Tamar S. Rubin, Tony Roscioli, Simone Reu-Hofer, Raquel Planas, Thomas Kaiser, Achim Weber, Steffen Hartleif, Sandra von Hardenberg, Ying Zhu, Ekkehard Sturm, Barbara Brotschi, Julia Hoefele, Solange Moll, and Heymut Omran
- Subjects
Male ,0301 basic medicine ,Primary Immunodeficiency Diseases ,Immunology ,Article ,Transcriptome ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Antigens, Neoplasm ,Interferon ,Exome Sequencing ,medicine ,Humans ,Immunology and Allergy ,Genetic Predisposition to Disease ,Child ,610 Medicine & health ,Immunodeficiency ,Inflammation ,business.industry ,RIG-I ,Interferon-stimulated gene ,Infant ,MDA5 ,medicine.disease ,030104 developmental biology ,Virus Diseases ,Child, Preschool ,030220 oncology & carcinogenesis ,TLR3 ,Female ,business ,medicine.drug - Abstract
BACKGROUND Recognition of viral nucleic acids is one of the primary triggers for a type I interferon-mediated antiviral immune response. Inborn errors of type I interferon immunity can be associated with increased inflammation and/or increased susceptibility to viral infections as a result of dysbalanced interferon production. NFX1-type zinc finger-containing 1 (ZNFX1) is an interferon-stimulated double-stranded RNA sensor that restricts the replication of RNA viruses in mice. The role of ZNFX1 in the human immune response is not known. OBJECTIVE We studied 15 patients from 8 families with an autosomal recessive immunodeficiency characterized by severe infections by both RNA and DNA viruses and virally triggered inflammatory episodes with hemophagocytic lymphohistiocytosis-like disease, early-onset seizures, and renal and lung disease. METHODS Whole exome sequencing was performed on 13 patients from 8 families. We investigated the transcriptome, posttranscriptional regulation of interferon-stimulated genes (ISGs) and predisposition to viral infections in primary cells from patients and controls stimulated with synthetic double-stranded nucleic acids. RESULTS Deleterious homozygous and compound heterozygous ZNFX1 variants were identified in all 13 patients. Stimulation of patient-derived primary cells with synthetic double-stranded nucleic acids was associated with a deregulated pattern of expression of ISGs and alterations in the half-life of the mRNA of ISGs and also associated with poorer clearance of viral infections by monocytes. CONCLUSION ZNFX1 is an important regulator of the response to double-stranded nucleic acids stimuli following viral infections. ZNFX1 deficiency predisposes to severe viral infections and a multisystem inflammatory disease.
- Published
- 2021
18. DAAM2 Variants Cause Nephrotic Syndrome via Actin Dysregulation
- Author
-
Mustafa K. Khokha, Ana C. Onuchic-Whitford, Matias Wagner, Luca Schierbaum, Dervla M. Connaughton, Korbinian M. Riedhammer, Amar J. Majmundar, Shirlee Shril, Verena Klämbt, Abdul A. Halawi, Caroline M. Kolvenbach, Yoshichika Katsura, Youying Mao, Friedhelm Hildebrandt, Konstantin Deutsch, Bruce L. Goode, Dean Thumkeo, Nina Mann, Makiko Nakayama, Tobias Hermle, Daniela A. Braun, Gregory J. Hoeprich, Florian Buerger, Sophia Schneider, Thomas M. Kitzler, Julia Hoefele, Ronen Schneider, Shrikant Mane, Jonathan Marquez, Steve Seltzsam, Lutz Renders, Richard P. Lifton, and Neveen A. Soliman
- Subjects
0301 basic medicine ,rho GTP-Binding Proteins ,Cytoplasm ,RHOA ,Nephrotic Syndrome ,Xenopus ,Kidney Glomerulus ,030232 urology & nephrology ,Mutation, Missense ,Formins ,macromolecular substances ,Biology ,Kidney ,Article ,Podocyte ,Animals, Genetically Modified ,03 medical and health sciences ,0302 clinical medicine ,Cell Movement ,Exome Sequencing ,Genetics ,medicine ,Animals ,Humans ,Pseudopodia ,RNA, Small Interfering ,Genetics (clinical) ,Actin ,Alleles ,Podocytes ,Microfilament Proteins ,Actin remodeling ,Genetic Variation ,Actin cytoskeleton ,Actins ,Cell biology ,Actin Cytoskeleton ,Daam2 ,Monogenic Kidney Diseases ,Podocytopathy ,Steroid-resistant Nephrotic Syndrome ,INF2 ,030104 developmental biology ,medicine.anatomical_structure ,biology.protein ,Filopodia - Abstract
The discovery of >60 monogenic causes of nephrotic syndrome (NS) has revealed a central role for the actin regulators RhoA/Rac1/Cdc42 and their effectors, including the formin INF2. By whole-exome sequencing (WES), we here discovered bi-allelic variants in the formin DAAM2 in four unrelated families with steroid-resistant NS. We show that DAAM2 localizes to the cytoplasm in podocytes and in kidney sections. Further, the variants impair DAAM2-dependent actin remodeling processes: wild-type DAAM2 cDNA, but not cDNA representing missense variants found in individuals with NS, rescued reduced podocyte migration rate (PMR) and restored reduced filopodia formation in shRNA-induced DAAM2-knockdown podocytes. Filopodia restoration was also induced by the formin-activating molecule IMM-01. DAAM2 also co-localizes and co-immunoprecipitates with INF2, which is intriguing since variants in both formins cause NS. Using invitro bulk and TIRF microscopy assays, we find that DAAM2 variants alter actin assembly activities of the formin. In a Xenopus daam2-CRISPR knockout model, we demonstrate actin dysregulation invivo and glomerular maldevelopment that is rescued by WT-DAAM2 mRNA. We conclude that DAAM2 variants are a likely cause of monogenic human SRNS due to actin dysregulation in podocytes. Further, we provide evidence that DAAM2-associated SRNS may be amenable to treatment using actin regulating compounds.
- Published
- 2020
19. Recessive
- Author
-
Amar J, Majmundar, Florian, Buerger, Thomas A, Forbes, Verena, Klämbt, Ronen, Schneider, Konstantin, Deutsch, Thomas M, Kitzler, Sara E, Howden, Michelle, Scurr, Ker Sin, Tan, Mickaël, Krzeminski, Eugen, Widmeier, Daniela A, Braun, Ethan, Lai, Ihsan, Ullah, Ali, Amar, Amy, Kolb, Kaitlyn, Eddy, Chin Heng, Chen, Daanya, Salmanullah, Rufeng, Dai, Makiko, Nakayama, Isabel, Ottlewski, Caroline M, Kolvenbach, Ana C, Onuchic-Whitford, Youying, Mao, Nina, Mann, Marwa M, Nabhan, Seymour, Rosen, Julie D, Forman-Kay, Neveen A, Soliman, Andreas, Heilos, Renate, Kain, Christoph, Aufricht, Shrikant, Mane, Richard P, Lifton, Shirlee, Shril, Melissa H, Little, and Friedhelm, Hildebrandt
- Subjects
Mice ,Nephrotic Syndrome ,Podocytes ,Animals ,Formins ,Humans ,Kidney Diseases ,Actins ,Adaptor Proteins, Signal Transducing - Abstract
Nephrotic syndrome (NS) is a leading cause of chronic kidney disease. We found recessive
- Published
- 2020
20. Phenotype expansion of heterozygous FOXC1 pathogenic variants toward involvement of congenital anomalies of the kidneys and urinary tract (CAKUT)
- Author
-
Sherif El Desoky, Verena Klämbt, Isabel Ottlewski, Friedhelm Hildebrandt, Prabha Senguttuva, Rufeng Dai, Makiko Nakayama, Steve Seltzsam, Olaf Bodamer, Nina Mann, Stuart B. Bauer, Ethan W. Lai, Chen-Han Wilfred Wu, Caroline M. Kolvenbach, Franziska Kause, Shirlee Shril, Aravind Selvin, Deborah R. Stein, Velibor Tasic, Dervla M. Connaughton, Chunyan Wang, and Jameela A. Kari
- Subjects
0301 basic medicine ,Heterozygote ,Urinary system ,030105 genetics & heredity ,Biology ,Kidney ,Article ,03 medical and health sciences ,Dysgenesis ,medicine ,Missense mutation ,Humans ,Eye Abnormalities ,Allele ,Child ,Urinary Tract ,Genetics (clinical) ,Exome sequencing ,Genetics ,Forkhead Transcription Factors ,medicine.disease ,Penetrance ,Phenotype ,eye diseases ,030104 developmental biology ,sense organs ,Kidney disease - Abstract
PURPOSE: Congenital anomalies of the kidney and urinary tract (CAKUT) are the most common cause of chronic kidney disease in childhood and adolescence. We aim to identify novel monogenic causes of CAKUT. METHODS: Exome sequencing was performed in 550 CAKUT-affected families. RESULTS: We discovered seven FOXC1 heterozygous likely pathogenic variants within eight CAKUT families. These variants are either never reported, or present in
- Published
- 2020
21. Mutations in
- Author
-
Nina, Mann, Slim, Mzoughi, Ronen, Schneider, Susanne J, Kühl, Denny, Schanze, Verena, Klämbt, Svjetlana, Lovric, Youying, Mao, Shasha, Shi, Weizhen, Tan, Michael, Kühl, Ana C, Onuchic-Whitford, Ernestine, Treimer, Thomas M, Kitzler, Franziska, Kause, Sven, Schumann, Makiko, Nakayama, Florian, Buerger, Shirlee, Shril, Amelie T, van der Ven, Amar J, Majmundar, Kristina Marie, Holton, Amy, Kolb, Daniela A, Braun, Jia, Rao, Tilman, Jobst-Schwan, Eva, Mildenberger, Thomas, Lennert, Alma, Kuechler, Dagmar, Wieczorek, Oliver, Gross, Beate, Ermisch-Omran, Anja, Werberger, Martin, Skalej, Andreas R, Janecke, Neveen A, Soliman, Shrikant M, Mane, Richard P, Lifton, Jan, Kadlec, Ernesto, Guccione, Michael J, Schmeisser, Martin, Zenker, and Friedhelm, Hildebrandt
- Subjects
Male ,Models, Molecular ,Nephrotic Syndrome ,Mutation, Missense ,Polymorphism, Single Nucleotide ,Pronephros ,Cell Line ,Gene Knockout Techniques ,Xenopus laevis ,Animals ,Humans ,Amino Acid Sequence ,Podocytes ,Protein Stability ,Infant, Newborn ,Gene Expression Regulation, Developmental ,High-Throughput Nucleotide Sequencing ,Infant ,Zinc Fingers ,DNA-Binding Proteins ,Hernia, Hiatal ,Basic Research ,Amino Acid Substitution ,Child, Preschool ,Gene Knockdown Techniques ,Microcephaly ,Nephrosis ,Female ,Transcription Factors - Abstract
BACKGROUND: Galloway-Mowat syndrome (GAMOS) is characterized by neurodevelopmental defects and a progressive nephropathy, which typically manifests as steroid-resistant nephrotic syndrome. The prognosis of GAMOS is poor, and the majority of children progress to renal failure. The discovery of monogenic causes of GAMOS has uncovered molecular pathways involved in the pathogenesis of disease. METHODS: Homozygosity mapping, whole-exome sequencing, and linkage analysis were used to identify mutations in four families with a GAMOS-like phenotype, and high-throughput PCR technology was applied to 91 individuals with GAMOS and 816 individuals with isolated nephrotic syndrome. In vitro and in vivo studies determined the functional significance of the mutations identified. RESULTS: Three biallelic variants of the transcriptional regulator PRDM15 were detected in six families with proteinuric kidney disease. Four families with a variant in the protein’s zinc-finger (ZNF) domain have additional GAMOS-like features, including brain anomalies, cardiac defects, and skeletal defects. All variants destabilize the PRDM15 protein, and the ZNF variant additionally interferes with transcriptional activation. Morpholino oligonucleotide-mediated knockdown of Prdm15 in Xenopus embryos disrupted pronephric development. Human wild-type PRDM15 RNA rescued the disruption, but the three PRDM15 variants did not. Finally, CRISPR-mediated knockout of PRDM15 in human podocytes led to dysregulation of several renal developmental genes. CONCLUSIONS: Variants in PRDM15 can cause either isolated nephrotic syndrome or a GAMOS-type syndrome on an allelic basis. PRDM15 regulates multiple developmental kidney genes, and is likely to play an essential role in renal development in humans.
- Published
- 2020
22. Correction to: Different approaches to long-term treatment of aHUS due to MCP mutations: a multicenter analysis
- Author
-
Karsten Häffner, Christopher Gerken, Matthias Hansen, Martin Pohl, Jens König, Verena Klämbt, Heiko Billing, Carmen Montoya, Martin Bald, Imke Hennies, Bärbel Lange-Sperandio, Tobias Vinke, Charlotte Gimpel, Sebastian Loos, and Martin Kirschstein
- Subjects
Male ,Nephrology ,Pediatrics ,medicine.medical_specialty ,2019-20 coronavirus outbreak ,Long term treatment ,Coronavirus disease 2019 (COVID-19) ,business.industry ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,MEDLINE ,Correction ,Membrane Cofactor Protein ,Recurrence ,Child, Preschool ,Internal medicine ,Mutation ,Pediatrics, Perinatology and Child Health ,medicine ,Humans ,Kidney Failure, Chronic ,Female ,Child ,business ,Atypical Hemolytic Uremic Syndrome - Abstract
Atypical hemolytic uremic syndrome (aHUS) is a rare, life-threatening microangiopathy, frequently causing kidney failure. Inhibition of the terminal complement complex with eculizumab is the only licensed treatment but mostly requires long-term administration and risks severe side effects. The underlying genetic cause of aHUS is thought to influence the severity of initial and recurring episodes, with milder courses in patients with mutations in membrane cofactor protein (MCP).Twenty pediatric cases of aHUS due to isolated heterozygous MCP mutations were reported from 12 German pediatric nephrology centers to describe initial presentation, timing of relapses, treatment, and kidney outcome.The median age of onset was 4.6 years, with a female to male ratio of 1:3. Without eculizumab maintenance therapy, 50% (9/18) of the patients experienced a first relapse after a median period of 3.8 years. Kaplan-Meier analysis showed a relapse-free survival of 93% at 1 year. Four patients received eculizumab long-term treatment, while 3 patients received short courses. We could not show a benefit from complement blockade therapy on long term kidney function, independent of short-term or long-term treatment. To prevent 1 relapse with eculizumab, the theoretical number-needed-to-treat (NNT) was 15 for the first year and 3 for the first 5 years after initial presentation.Our study shows that heterozygous MCP mutations cause aHUS with a risk of first relapse of about 10% per year, resulting in large NNTs for prevention of relapses with eculizumab. More studies are needed to define an optimal treatment schedule for patients with MCP mutations to minimize the risks of the disease and treatment.
- Published
- 2021
- Full Text
- View/download PDF
23. A CRISPR-based assay for the detection of opportunistic infections post-transplantation and for the monitoring of transplant rejection
- Author
-
Michael M, Kaminski, Miguel A, Alcantar, Isadora T, Lape, Robert, Greensmith, Allison C, Huske, Jacqueline A, Valeri, Francisco M, Marty, Verena, Klämbt, Jamil, Azzi, Enver, Akalin, Leonardo V, Riella, and James J, Collins
- Subjects
Graft Rejection ,Male ,Polyomavirus Infections ,Cytomegalovirus ,Middle Aged ,Opportunistic Infections ,Kidney ,Chemokine CXCL9 ,Kidney Transplantation ,Tumor Virus Infections ,Postoperative Complications ,Point-of-Care Testing ,Cytomegalovirus Infections ,DNA, Viral ,Humans ,Clustered Regularly Interspaced Short Palindromic Repeats ,Kidney Diseases ,RNA, Messenger ,CRISPR-Cas Systems ,Pathology, Molecular ,Polyomavirus ,Biomarkers - Abstract
In organ transplantation, infection and rejection are major causes of graft loss. They are linked by the net state of immunosuppression. To diagnose and treat these conditions earlier, and to improve long-term patient outcomes, refined strategies for the monitoring of patients after graft transplantation are needed. Here, we show that a fast and inexpensive assay based on CRISPR-Cas13 accurately detects BK polyomavirus DNA and cytomegalovirus DNA from patient-derived blood and urine samples, as well as CXCL9 messenger RNA (a marker of graft rejection) at elevated levels in urine samples from patients experiencing acute kidney transplant rejection. The assay, which we adapted for lateral-flow readout, enables-via simple visualization-the post-transplantation monitoring of common opportunistic viral infections and of graft rejection, and should facilitate point-of-care post-transplantation monitoring.
- Published
- 2019
24. A CRISPR-based assay for the detection of opportunistic infections post-transplantation and for the monitoring of transplant rejection
- Author
-
Leonardo V. Riella, Enver Akalin, Isadora T. Lape, Michael M. Kaminski, Verena Klämbt, James J. Collins, Jamil Azzi, Robert Greensmith, Jacqueline A. Valeri, Francisco M. Marty, Allison C. Huske, Miguel A. Alcantar, Massachusetts Institute of Technology. Institute for Medical Engineering & Science, and Broad Institute of MIT and Harvard
- Subjects
0301 basic medicine ,medicine.medical_specialty ,Point-of-care testing ,medicine.medical_treatment ,Biomedical Engineering ,Medicine (miscellaneous) ,Bioengineering ,Urine ,Organ transplantation ,03 medical and health sciences ,0302 clinical medicine ,Medicine ,Renal replacement therapy ,Kidney ,business.industry ,Immunosuppression ,medicine.disease ,Computer Science Applications ,Transplant rejection ,Transplantation ,030104 developmental biology ,medicine.anatomical_structure ,surgical procedures, operative ,Immunology ,business ,030217 neurology & neurosurgery ,Biotechnology - Abstract
In organ transplantation, infection and rejection are major causes of graft loss. They are linked by the net state of immunosuppression. To diagnose and treat these conditions earlier, and to improve long-term patient outcomes, refined strategies for the monitoring of patients after graft transplantation are needed. Here, we show that a fast and inexpensive assay based on CRISPR–Cas13 accurately detects BK polyomavirus DNA and cytomegalovirus DNA from patient-derived blood and urine samples, as well as CXCL9 messenger RNA (a marker of graft rejection) at elevated levels in urine samples from patients experiencing acute kidney transplant rejection. The assay, which we adapted for lateral-flow readout, enables—via simple visualization—the post-transplantation monitoring of common opportunistic viral infections and of graft rejection, and should facilitate point-of-care post-transplantation monitoring., National Science Foundation (Award 1122374)
- Published
- 2019
25. Ribavirin therapy of hepatitis E infection may cause hyporegenerative anemia in pediatric renal transplant patients
- Author
-
Martin Pohl, Marcus Panning, Verena Klämbt, Maximilian Seidl, and Karsten Häffner
- Subjects
medicine.medical_specialty ,Anemia ,viruses ,medicine.medical_treatment ,Renal function ,Alpha interferon ,Gastroenterology ,Virus ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Internal medicine ,medicine ,030212 general & internal medicine ,Transplantation ,business.industry ,Ribavirin ,virus diseases ,Glomerulonephritis ,Immunosuppression ,Hepatitis E ,medicine.disease ,digestive system diseases ,chemistry ,Pediatrics, Perinatology and Child Health ,030211 gastroenterology & hepatology ,business - Abstract
HEV infection can lead to chronic hepatitis in immunosuppressed patients; extrahepatic manifestations are rarely seen. Here, we report a 13-year-old renal transplant patient with chronic hepatitis E and renal involvement. Ribavirin therapy led to temporary virus clearance and amelioration of kidney function. However, ribavirin therapy caused severe hyporegenerative anemia, which has so far only been reported in patients treated with a combination of ribavirin and interferon alpha.
- Published
- 2018
- Full Text
- View/download PDF
26. A Novel Function for P2Y2 in Myeloid Recipient-Derived Cells during Graft-versus-Host Disease
- Author
-
Korcan Ayata, Petya Apostolova, Verena Klämbt, Lukas Schwab, Marco Prinz, Jan Hülsdünker, Annette Schmitt-Graeff, Robert Zeiser, Heide Dierbach, Gabriele Prinz, Marco Idzko, Marie Follo, and Sebastian A. Wohlfeil
- Subjects
Myeloid ,MAP Kinase Signaling System ,medicine.medical_treatment ,Immunology ,Graft vs Host Disease ,chemical and pharmacologic phenomena ,Hematopoietic stem cell transplantation ,Receptors, Purinergic P2Y2 ,Mice ,Adenosine Triphosphate ,immune system diseases ,medicine ,Immunology and Allergy ,Animals ,Humans ,Myeloid Cells ,Molecular Targeted Therapy ,Receptor ,Interleukin 6 ,Mice, Knockout ,Innate immune system ,biology ,Interleukin-6 ,Hematopoietic Stem Cell Transplantation ,medicine.disease ,Transplantation ,Intestines ,Mice, Inbred C57BL ,surgical procedures, operative ,medicine.anatomical_structure ,Graft-versus-host disease ,Myeloperoxidase ,biology.protein ,Reactive Oxygen Species - Abstract
Acute graft-versus-host disease (GvHD) is a life-threatening complication of allogeneic hematopoietic cell transplantation. During the initiation phase of acute GvHD, endogenous danger signals such as ATP are released and inform the innate immune system via activation of the purinergic receptor P2X7 that a noninfectious damage has occurred. A second ATP-activated purinergic receptor involved in inflammatory diseases is P2Y2. In this study, we used P2y2−/− mice to test the role of this receptor in GvHD. P2y2−/− recipients experienced reduced GvHD-related mortality, IL-6 levels, enterocyte apoptosis, and histopathology scores. Chimeric mice with P2y2 deficiency restricted to hematopoietic tissues survived longer after GvHD induction than did wild-type mice. P2y2 deficiency of the recipient was connected to lower levels of myeloperoxidase in the intestinal tract of mice developing GvHD and a reduced myeloid cell signature. Selective deficiency of P2Y2 in inflammatory monocytes decreased GvHD severity. Mechanistically, P2y2−/− inflammatory monocytes displayed defective ERK activation and reactive oxygen species production. Compatible with a role of P2Y2 in human GvHD, the frequency of P2Y2+ cells in inflamed GvHD lesions correlated with histopathological GvHD severity. Our findings indicate a novel function for P2Y2 in ATP-activated recipient myeloid cells during GvHD, which could be exploited when targeting danger signals to prevent GvHD.
- Published
- 2015
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.