1. Pooled Single-Molecule transcriptomics identifies a giant gene under balancing selection in sunflower
- Author
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Vear F, Jérôme Gouzy, Stéphane Muños, Fuchs A, Hélène Badouin, Nicolas Pouilly, Nicolas B. Langlade, and Marie-Claude Boniface
- Subjects
Genetics ,education.field_of_study ,Population ,Gene duplication ,Biology ,Allele ,Quantitative trait locus ,education ,Balancing selection ,Gene ,Selection (genetic algorithm) ,Function (biology) - Abstract
SummaryGenes under balancing selection control phenotypes such as immunity, color or sex, but are difficult to identify. Self-incompatibility genes are under negative frequency-dependent selection, a special case of balancing selection, with up to 30 to 50 alleles segregating per population. We developed a method based on pooled Single-Molecule transcriptomics to identify balanced polymorphisms expressed in tissues of interest. We searched for multi-allelic, non-recombining genes causing self-incompatibility in wild sunflower (Helianthus annuus). A diversity scan in pistil identified a gene,Ha7650b,that displayed balanced polymorphism and colocalized with a quantitative trait locus for self-incompatibility. Unexpectedly,Ha7650bdisplayed gigantism (400 kb), which was caused by increase in intron size as a consequence of suppressed recombination.Ha7650bemerged after a whole-genome duplication (29 millions years ago) followed by tandem duplications and neofunctionalisation.Ha7650bshows expression, genetic location, genomic neighbourhood and predicted function that provide strong evidence that it is involved in self-incompatibility. Pooled Single-Molecule transcriptomics is an affordable and powerful new method that makes it possible to identify diversity and structural outliers simultaneously. It will allow a breakthrough in the discovery of self-incompatibility genes and other expressed genes under balancing selection.
- Published
- 2021