5 results on '"Van de Bittner KC"'
Search Results
2. MIDAS: A Modular DNA Assembly System for Synthetic Biology.
- Author
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van Dolleweerd CJ, Kessans SA, Van de Bittner KC, Bustamante LY, Bundela R, Scott B, Nicholson MJ, and Parker EJ
- Subjects
- Cloning, Molecular, Gene Knockout Techniques, Gene Library, Genetic Vectors, Indoles metabolism, Metabolic Networks and Pathways genetics, Microorganisms, Genetically-Modified, Mutation, DNA biosynthesis, Metabolic Engineering methods, Penicillium genetics, Penicillium metabolism, Synthetic Biology methods
- Abstract
A modular and hierarchical DNA assembly platform for synthetic biology based on Golden Gate (Type IIS restriction enzyme) cloning is described. This enabling technology, termed MIDAS (for Modular Idempotent DNA Assembly System), can be used to precisely assemble multiple DNA fragments in a single reaction using a standardized assembly design. It can be used to build genes from libraries of sequence-verified, reusable parts and to assemble multiple genes in a single vector, with full user control over gene order and orientation, as well as control of the direction of growth (polarity) of the multigene assembly, a feature that allows genes to be nested between other genes or genetic elements. We describe the detailed design and use of MIDAS, exemplified by the reconstruction, in the filamentous fungus Penicillium paxilli, of the metabolic pathway for production of paspaline and paxilline, key intermediates in the biosynthesis of a range of indole diterpenes-a class of secondary metabolites produced by several species of filamentous fungi. MIDAS was used to efficiently assemble a 25.2 kb plasmid from 21 different modules (seven genes, each composed of three basic parts). By using a parts library-based system for construction of complex assemblies, and a unique set of vectors, MIDAS can provide a flexible route to assembling tailored combinations of genes and other genetic elements, thereby supporting synthetic biology applications in a wide range of expression hosts.
- Published
- 2018
- Full Text
- View/download PDF
3. Positron Emission Tomography Assessment of the Intranasal Delivery Route for Orexin A.
- Author
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Van de Bittner GC, Van de Bittner KC, Wey HY, Rowe W, Dharanipragada R, Ying X, Hurst W, Giovanni A, Alving K, Gupta A, Hoekman J, and Hooker JM
- Subjects
- Administration, Intranasal, Animals, Brain metabolism, Macaca mulatta, Male, Methylation, Molecular Structure, Orexins chemical synthesis, Orexins chemistry, Orexins pharmacokinetics, Raclopride administration & dosage, Raclopride pharmacokinetics, Rats, Sprague-Dawley, Wakefulness-Promoting Agents chemical synthesis, Wakefulness-Promoting Agents chemistry, Wakefulness-Promoting Agents pharmacokinetics, Brain diagnostic imaging, Brain drug effects, Carbon Radioisotopes, Orexins administration & dosage, Positron-Emission Tomography methods, Wakefulness-Promoting Agents administration & dosage
- Abstract
Intranasal drug delivery is a noninvasive drug delivery route that can enhance systemic delivery of therapeutics with poor oral bioavailability by exploiting the rich microvasculature within the nasal cavity. The intranasal delivery route has also been targeted as a method for improved brain uptake of neurotherapeutics, with a goal of harnessing putative, direct nose-to-brain pathways. Studies in rodents, nonhuman primates, and humans have pointed to the efficacy of intranasally delivered neurotherapeutics, while radiolabeling studies have analyzed brain uptake following intranasal administration. In the present study, we employed carbon-11 radioactive methylation to assess the pharmacokinetic mechanism of intranasal delivery of Orexin A, a native neuropeptide and prospective antinarcoleptic drug that binds the orexin receptor 1. Using physicochemical and pharmacological analysis, we identified the methylation sites and confirmed the structure and function of methylated Orexin A (CH
3 -Orexin A) prior to monitoring its brain uptake following intranasal administration in rodent and nonhuman primate. Through positron emission tomography (PET) imaging of [11 C]CH3 -Orexin A, we determined that the brain exposure to Orexin A is poor after intranasal administration. Additional ex vivo analysis of brain uptake using [125 I]Orexin A indicated intranasal administration of Orexin A affords similar brain uptake when compared to intravenous administration across most brain regions, with possible increased brain uptake localized to the olfactory bulbs.- Published
- 2018
- Full Text
- View/download PDF
4. Heterologous Biosynthesis of Nodulisporic Acid F.
- Author
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Van de Bittner KC, Nicholson MJ, Bustamante LY, Kessans SA, Ram A, van Dolleweerd CJ, Scott B, and Parker EJ
- Subjects
- Molecular Structure, Penicillium chemistry, Penicillium genetics, Penicillium metabolism, Fungi genetics, Fungi metabolism, Indoles chemistry
- Abstract
Nodulisporic acids comprise a group of valuable indole diterpenes that exhibit potent insecticidal activities. We report the identification of a gene cluster in the genome of the filamentous fungus Hypoxylon pulicicidum (Nodulisporium sp.) that contains genes responsible for the biosynthesis of nodulisporic acids. Using Penicillium paxilli as a heterologous host, and through pathway reconstitution experiments, we identified the function of four genes involved in the biosynthesis of the nodulisporic acid core compound, nodulisporic acid F (NAF). Two of these genes (nodM and nodW) are especially significant as they encode enzymes with previously unreported functionality: nodM encodes a 3-geranylgeranylindole epoxidase capable of catalyzing only a single epoxidation step to prime formation of the distinctive ring structure of nodulisporic acids, and nodW encodes the first reported gene product capable of introducing a carboxylic acid moiety to an indole diterpene core structure that acts as a reactive handle for further modification. Here, we present the enzymatic basis for the biosynthetic branch point that gives rise to nodulisporic acids.
- Published
- 2018
- Full Text
- View/download PDF
5. Draft Genome Sequence of the Filamentous Fungus Hypoxylon pulicicidum ATCC 74245.
- Author
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Nicholson MJ, Van de Bittner KC, Ram A, Bustamante LY, Scott B, and Parker EJ
- Abstract
Hypoxylon pulicicidum strain MF5954 (ATCC 74245) (formerly classified as Nodulisporium sp.) is a filamentous fungal species known for its production of the secondary metabolite nodulisporic acid A. We present here the 41.5-Mb draft genome sequence for this organism., (Copyright © 2018 Nicholson et al.)
- Published
- 2018
- Full Text
- View/download PDF
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