39 results on '"Van My Pham"'
Search Results
2. Serum and Urine Neutrophil Gelatinase-Associated Lipocalin Levels Measured at Admission Predict Progression to Chronic Kidney Disease in Sepsis-Associated Acute Kidney Injury Patients
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Tuan, Pham Ngoc Huy, primary, Quyen, Dao Bui Quy, additional, Van Khoa, Huynh, additional, Loc, Nguyen Duc, additional, Van My, Pham, additional, Dung, Nguyen Huu, additional, Toan, Nguyen Duy, additional, Quyet, Do, additional, and Thang, Le Viet, additional
- Published
- 2020
- Full Text
- View/download PDF
3. An insight into the sialome of the frog biting fly, Corethrella appendiculata
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José M. C. Ribeiro, L.P. Lounibos, Van My Pham, Andrezza C. Chagas, and Eric Calvo
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Nematocera ,biology ,Host (biology) ,fungi ,Zoology ,biology.organism_classification ,Biochemistry ,Chironomidae ,Insect Science ,Sialome ,Culicomorpha ,Wolbachia ,Chaoboridae ,Thaumaleidae ,Molecular Biology - Abstract
The Nematocera infraorder Culicomorpha is believed to have descended from bloodfeeding ancestors over 200 million years ago, generating bloodfeeding and non-bloodfeeding flies in two superfamilies, the Culicoidea-containing the mosquitoes, the frog-feeding midges, the Chaoboridae, and the Dixidae-and the Chironomoidea-containing the black flies, the ceratopogonids, the Chironomidae, and the Thaumaleidae. Blood feeding requires many adaptations, including development of a sophisticated salivary potion that disarms host hemostasis, the physiologic mechanism comprising platelet aggregation, vasoconstriction, and blood clotting. The composition of the sialome (from the Greek sialo = saliva) from bloodfeeding animals can be inferred from analysis of their salivary gland transcriptome. While members of the mosquitoes, black flies, and biting midges have provided sialotranscriptome descriptions, no species of the frog-biting midges has been thus analyzed. We describe in this work the sialotranscriptome of Corethrella appendiculata, revealing a complex potion of enzymes, classical nematoceran protein families involved in blood feeding, and novel protein families unique to this species of frog-feeding fly. Bacterial (Wolbachia) and novel viral sequences were also discovered.
- Published
- 2014
4. Positive selection drives accelerated evolution of mosquito salivary genes associated with blood-feeding
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Van My Pham, Gabriella Sferra, Marco Pombi, Claudio J. Struchiner, Bruno Arcà, Fabrizio Lombardo, and José M. C. Ribeiro
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Genetics ,Saliva ,Salivary gland ,Anopheles gambiae ,Anopheles ,Biology ,biology.organism_classification ,Gene expression profiling ,medicine.anatomical_structure ,Insect Science ,medicine ,Molecular Biology ,Gene ,Selection (genetic algorithm) ,Function (biology) - Abstract
The saliva of bloodsucking animals contains dozens to hundreds of proteins that counteract their hosts’ haemostasis, inflammation and immunity. It was previously observed that salivary proteins involved in haematophagy are much more divergent in their primary sequence than those of housekeeping function, when comparisons were made between closely related organisms. While this pattern of evolution could result from relaxed selection or drift, it could alternatively be the result of positive selection driven by the intense pressure of the host immune system. We investigated the polymorphism of five different genes associated with blood-feeding in the mosquito Anopheles gambiae and obtained evidence in four genes for sites with signatures of positive selection. These results add salivary gland genes from bloodsucking arthropods to the small list of genes driven by positive selection.
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- 2013
5. An Insight Into the Sialotranscriptome ofTriatoma rubida(Hemiptera: Heteroptera)
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Ivo M.B. Francischetti, Teresa C.F. Assumpção, Van My Pham, José M. C. Ribeiro, and Carolina E. Reisenman
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Protracta ,Salivary Glands ,Article ,Transcriptome ,Botany ,Animals ,Chagas Disease ,Triatoma ,Antigens ,Saliva ,Trypanosoma cruzi ,Expressed Sequence Tags ,Genetics ,Expressed sequence tag ,General Veterinary ,biology ,biology.organism_classification ,Hemiptera ,Insect Vectors ,Infectious Diseases ,Insect Science ,Sialome ,Trypanosoma ,Parasitology - Abstract
The kissing bug Triatoma rubida (Uhler, 1894) is found in southwestern United States and parts of Mexico where it is found infected with Trypanosoma cruzi, invades human dwellings and causes allergies from their bites. Although the protein salivary composition of several triatomine species is known, not a single salivary protein sequence is known from T. rubida. Furthermore, the salivary diversity of related hematophagous arthropods is very large probably because of the immune pressure from their hosts. Here we report the sialotranscriptome analysis of T. rubida based on the assembly of 1,820 high-quality expressed sequence tags, 51% of which code for putative secreted peptides, including lipocalins, members of the antigen five family, apyrase, hemolysin, and trialysin families. Interestingly, T. rubida lipocalins are at best 40% identical in primary sequence to those of T. protracta, a kissing bug that overlaps its range with T. rubida, indicating the diversity of the salivary lipocalins among species of the same hematophagous genus. We additionally found several expressed sequence tags coding for proteins of clear Trypanosoma spp. origin. This work contributes to the future development of markers of human and pet exposure to T. rubida and to the possible development of desensitization therapies. Supp. Data 1 and 2 (online only) of the transcriptome and deducted protein sequences can be obtained from http://exon.niaid.nih.gov/transcriptome/Trubida/Triru-S1-web.xlsx and http://exon.niaid.nih.gov/transcriptome/Trubida/Triru-S2-web.xlsx.
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- 2012
6. Nucleosides from Phlebotomus papatasi Salivary Gland Ameliorate Murine Collagen-Induced Arthritis by Impairing Dendritic Cell Functions
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Anderson Sá-Nunes, Renata Grespan, José M. C. Ribeiro, João Santana da Silva, Cristiane M. Milanezi, Carlo José Freire Oliveira, Waldiceu A. Verri, Fernando Q. Cunha, David D. Brand, Djalma S. Lima-Junior, Diego L. Costa, Jesus G. Valenzuela, Vanessa Carregaro, Thiago M. Cunha, and Van My Pham
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Male ,Saliva ,T-Lymphocytes ,Immunology ,Anti-Inflammatory Agents ,Arthritis ,Biology ,Salivary Glands ,Article ,Proinflammatory cytokine ,Mice ,Immune system ,In vivo ,medicine ,Animals ,Immunology and Allergy ,Chromatography, High Pressure Liquid ,Cell Proliferation ,Salivary gland ,Reverse Transcriptase Polymerase Chain Reaction ,Tissue Extracts ,Nucleosides ,Dendritic Cells ,Dendritic cell ,medicine.disease ,Arthritis, Experimental ,In vitro ,medicine.anatomical_structure ,Mice, Inbred DBA ,Phlebotomus ,Female - Abstract
Among several pharmacological compounds, Phlebotomine saliva contains substances with anti-inflammatory properties. In this article, we demonstrated the therapeutic activity of salivary gland extract (SGE) of Phlebotomus papatasi in an experimental model of arthritis (collagen-induced arthritis [CIA]) and identified the constituents responsible for such activity. Daily administration of SGE, initiated at disease onset, attenuated the severity of CIA, reducing the joint lesion and proinflammatory cytokine release. In vitro incubation of dendritic cells (DCs) with SGE limited specific CD4+ Th17 cell response. We identified adenosine (ADO) and 5′AMP as the major salivary molecules responsible for anti-inflammatory activities. Pharmacologic inhibition of ADO A2A receptor or enzymatic catabolism of salivary nucleosides reversed the SGE-induced immunosuppressive effect. Importantly, CD73 (ecto-5′-nucleotidase enzyme) is expressed on DC surface during stage of activation, suggesting that ADO is also generated by 5′AMP metabolism. Moreover, both nucleosides mimicked SGE-induced anti-inflammatory activity upon DC function in vitro and attenuated establishment of CIA in vivo. We reveal that ADO and 5′AMP are present in pharmacological amounts in P. papatasi saliva and act preferentially on DC function, consequently reducing Th17 subset activation and suppressing the autoimmune response. Thus, it is plausible that these constituents might be promising therapeutic molecules to target immune inflammatory diseases.
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- 2011
7. Insight into the Salivary Transcriptome and Proteome of Dipetalogaster maxima
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Carlos André Ornelas Ricart, Ivo M.B. Francischetti, José M. C. Ribeiro, Paula Beatriz Santiago, Jaime M. Santana, Rayner M. L. Queiroz, Zhaojing Meng, Cleudson Nery de Castro, Van My Pham, Teresa C.F. Assumpção, Sébastien Charneau, and Carla Nunes de Araújo
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Saliva ,Proteome ,Hematophagy ,Molecular Sequence Data ,Dipetalogaster ,Peptide Mapping ,Biochemistry ,Mass Spectrometry ,Salivary Glands ,Article ,Transcriptome ,Complementary DNA ,Animals ,Cluster Analysis ,Amino Acid Sequence ,RNA, Messenger ,Gene Library ,Gel electrophoresis ,biology ,cDNA library ,Gene Expression Profiling ,General Chemistry ,biology.organism_classification ,Molecular biology ,Insect Proteins ,Electrophoresis, Polyacrylamide Gel ,Triatominae ,Sequence Alignment - Abstract
Dipetalogaster maximais a blood-sucking Hemiptera that inhabits sylvatic areas in Mexico. It usually takes its blood meal from lizards, but following human population growth, it invaded suburban areas, feeding also on humans and domestic animals. Hematophagous insect salivary glands produce potent pharmacologic compounds that counteract host hemostasis, including anticlotting, antiplatelet, and vasodilatory molecules. To obtain further insight into the salivary biochemical and pharmacologic complexity of this insect, a cDNA library from its salivary glands was randomly sequenced. Salivary proteins were also submitted to one- and two-dimensional gel electrophoresis (1DE and 2DE) followed by mass spectrometry analysis. We present the analysis of a set of 2728 cDNA sequences, 1375 of which coded for proteins of a putative secretory nature. The saliva 2DE proteome displayed approximately 150 spots. The mass spectrometry analysis revealed mainly lipocalins, pallidipins, antigen 5-like proteins, and apyrases. The redundancy of sequence identification of saliva-secreted proteins suggests that proteins are present in multiple isoforms or derive from gene duplications. Supplemental files can be downloaded from http://exon.niaid.nih.gov/transcriptome/D_maxima/Dm-S1-web.xls and http://exon.niaid.nih.gov/transcriptome/D_maxima/Dm-S2-web.xls.
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- 2011
8. Insight into the Sialome of the Bed Bug, Cimex lectularius
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Eric Calvo, Ivo M.B. Francischetti, Jesus G. Valenzuela, Alvaro Romero, Kent D. Barbian, Amanda J. Favreau, John F. Andersen, José M. C. Ribeiro, and Van My Pham
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Male ,Models, Molecular ,Proteomics ,Bedbugs ,Hematophagy ,Molecular Sequence Data ,Biochemistry ,Article ,Transcriptome ,Bed bug ,Tandem Mass Spectrometry ,Cimicidae ,medicine ,Animals ,Amino Acid Sequence ,Salivary Proteins and Peptides ,Phylogeny ,DNA Primers ,Gene Library ,Genetics ,Base Sequence ,biology ,Computational Biology ,Feeding Behavior ,Sequence Analysis, DNA ,General Chemistry ,medicine.disease ,biology.organism_classification ,Molecular biology ,Enzymes ,Sialome ,Proteome ,Acetylcholinesterase ,Insect Proteins ,Female ,Cimex lectularius ,Sequence Alignment - Abstract
The evolution of insects to a blood diet leads to the development of a saliva that antagonizes their hosts' hemostasis and inflammation. Hemostasis and inflammation are redundant processes, and thus a complex salivary potion comprised of dozens or near one hundred different polypeptides is commonly found by transcriptome or proteome analysis of these organisms. Several insect orders or families evolved independently to hematophagy creating unique salivary potions in the form of novel pharmacological use of endogenous substances, and in the form of unique proteins not matching other known proteins, these probably arriving by fast evolution of salivary proteins as they evade their hosts' immune response. In this work we present a preliminary description of the sialome (from the Greek Sialo = saliva) of the common bed bug Cimex lectularius, the first such work from a member of the Cimicidae family. This manuscript is a guide for the supplemental database files http://exon.niaid.nih.gov/transcriptome/C_lectularius/S1/Cimex-S1.zip and http://exon.niaid.nih.gov/transcriptome/C_lectularius/S2/Cimex-S2.xls
- Published
- 2010
9. The Salivary Gland Transcriptome of the Eastern Tree Hole Mosquito, Ochlerotatus triseriatus
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Ken E. Olson, José M. C. Ribeiro, Kent D. Barbian, Irma Sanchez-Vargas, Michalis Kotsyfakis, Eric Calvo, Van My Pham, and Amanda J. Favreau
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Saliva ,General Veterinary ,biology ,Salivary gland ,cDNA library ,fungi ,biology.organism_classification ,Virology ,Infectious Diseases ,medicine.anatomical_structure ,Immunity ,Insect Science ,Vector (epidemiology) ,Sialome ,medicine ,Parasitology ,Pathogen ,Ochlerotatus triseriatus - Abstract
Saliva of blood-sucking arthropods contains a complex mixture of peptides that affect their host's hemostasis, inflammation, and immunity. These activities can also modify the site of pathogen delivery and increase disease transmission. Saliva also induces hosts to mount an antisaliva immune response that can lead to skin allergies or even anaphylaxis. Accordingly, knowledge of the salivary repertoire, or sialome, of a mosquito is useful to provide a knowledge platform to mine for novel pharmacological activities, to develop novel vaccine targets for vector-borne diseases, and to develop epidemiological markers of vector exposure and candidate desensitization vaccines. The mosquito Ochlerotatus triseriatus is a vector of La Crosse virus and produces allergy in humans. In this work, a total of 1,575 clones randomly selected from an adult female O. triseriatus salivary gland cDNA library was sequenced and used to assemble a database that yielded 731 clusters of related sequences, 560 of which were ...
- Published
- 2010
10. An insight into the salivary transcriptome and proteome of the soft tick and vector of epizootic bovine abortion, Ornithodoros coriaceus
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Ben J. Mans, Van My Pham, Mark R. Hall, Timothy D. Veenstra, Michail Kotsyfakis, Ivo M.B. Francischetti, Nanda P. Gudderra, José M. C. Ribeiro, and Zhaojing Meng
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Calcitonin ,Proteome ,Protein family ,Molecular Sequence Data ,Biophysics ,Cattle Diseases ,Proteomics ,Biochemistry ,Article ,Microbiology ,Transcriptome ,Adrenomedullin ,Ticks ,Animals ,Trypsin ,Amino Acid Sequence ,Salivary Proteins and Peptides ,Defensin ,Conserved Sequence ,Ornithodoros ,biology ,Gene Expression Profiling ,Argasidae ,biology.organism_classification ,Molecular biology ,Tick Infestations ,Abortion, Spontaneous ,Sialome ,Cattle ,Female ,Sequence Alignment - Abstract
The salivary glands of blood-sucking arthropods contain a redundant 'magic potion' that counteracts their vertebrate host's hemostasis, inflammation, and immunity. We here describe the salivary transcriptome and proteomics (sialome) of the soft tick Ornithodoros coriaceus. The resulting analysis helps to consolidate the classification of common proteins found in both soft and hard ticks, such as the lipocalins, Kunitz, cystatin, basic tail, hebraein, defensin, TIL domain, metalloprotease, 5'-nucleotidase/apyrase, and phospholipase families, and also to identify protein families uniquely found in the Argasidae, such as the adrenomedullin/CGRP peptides, 7DB, 7 kDa, and the RGD-containing single-Kunitz proteins. Additionally, we found a protein belonging to the cytotoxin protein family that has so far only been identified in hard ticks. Three other unique families common only to the Ornithodoros genus were discovered. Edman degradation, 2D and 1D-PAGE of salivary gland homogenates followed by tryptic digestion and HPLC MS/MS of results confirms the presence of several proteins. These results indicate that each genus of hematophagous arthropods studied to date evolved unique protein families that assist blood feeding, thus characterizing potentially new pharmacologically active components or antimicrobial agents.
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- 2008
11. An insight into the sialome of the soft tick, Ornithodorus parkeri
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José M. C. Ribeiro, Nanda P. Gudderra, Zhaojing Meng, Timothy D. Veenstra, Ivo M.B. Francischetti, Van My Pham, and Ben J. Mans
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Proteomics ,Ixodidae ,Molecular Sequence Data ,Tick ,Biochemistry ,Salivary Glands ,Article ,Borrelia parkeri ,Tandem Mass Spectrometry ,Borrelia ,parasitic diseases ,Animals ,Gene family ,Electrophoresis, Gel, Two-Dimensional ,Amino Acid Sequence ,Ornithodoros ,Saliva ,Molecular Biology ,Chromatography, High Pressure Liquid ,Gene Library ,Genetics ,biology ,Gene Expression Profiling ,Argasidae ,Mucins ,bacterial infections and mycoses ,biology.organism_classification ,Cystatins ,Molecular biology ,Lipocalins ,Enzymes ,Insect Science ,Sialome ,Arachnid Vectors ,Polyvinyls ,Peptides - Abstract
While hard ticks (Ixodidae) take several days to feed on their hosts, soft ticks (Argasidae) feed faster, usually taking less than 1 h per meal. Saliva assists in the feeding process by providing a cocktail of anti-hemostatic, anti-inflammatory and immunomodullatory compounds. Saliva of hard ticks has been shown to contain several families of genes each having multiple members, while those of soft ticks are relatively unexplored. Analysis of the salivary transcriptome of the soft tick Ornithodorus parkeri, the vector of the relapsing fever agent Borrelia parkeri, indicates that gene duplication events have led to a large expansion of the lipocalin family, as well as of several genes containing Kunitz domains indicative of serine protease inhibitors, and several other gene families also found in hard ticks. Novel protein families with sequence homology to insulin growth factor-binding protein (prostacyclin-stimulating factor), adrenomedulin, serum amyloid A protein precursor and similar to HIV envelope protein were also characterized for the first time in the salivary gland of a blood-sucking arthropod. The sialotranscriptome of O. parkeri confirms that gene duplication events are an important driving force in the creation of salivary cocktails of blood-feeding arthropods, as was observed with hard ticks and mosquitoes. Most of the genes coding for expanded families are homologous to those found in hard ticks, indicating a strong common evolutionary path between the two families. As happens to all genera of blood-sucking arthropods, several new proteins were also found, indicating the process of adaptation to blood feeding still continues to recent times.
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- 2008
12. An insight into the sialotranscriptome of the seed-feeding bug, Oncopeltus fasciatus
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Angela H. Lopes, Ivo M.B. Francischetti, José M. C. Ribeiro, Van My Pham, and Felipe A. Dias
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Proteases ,DNA, Complementary ,Transcription, Genetic ,medicine.medical_treatment ,Molecular Sequence Data ,Biology ,Polymerase Chain Reaction ,Biochemistry ,Salivary Glands ,Article ,Heteroptera ,Transcriptome ,Serine ,medicine ,Animals ,Amino Acid Sequence ,Salivary Proteins and Peptides ,Saliva ,Molecular Biology ,Conserved Sequence ,Expressed Sequence Tags ,chemistry.chemical_classification ,Expressed sequence tag ,Protease ,food and beverages ,Animal Feed ,Cystatins ,Amino acid ,chemistry ,Insect Science ,Seeds ,Cystatin ,Sequence Alignment ,Function (biology) - Abstract
The salivary transcriptome of the seed-feeding hemipteran, Oncopeltus fasciatus (milkweed bug), is described following assembly of 1,025 ESTs into 305 clusters of related sequences. Inspection of these sequences reveals abundance of low complexity, putative secreted products rich in the amino acids (aa) glycine, serine or threonine, which might function as silk or mucins and assist food canal lubrication and sealing of the feeding site around the mouthparts. Several protease inhibitors were found, including abundant expression of cystatin transcripts that may inhibit cysteine proteases common in seeds that might injure the insect or induce plant apoptosis. Serine proteases and lipases are described that might assist digestion and liquefaction of seed proteins and oils. Finally, several novel putative proteins are described with no known function that might affect plant physiology or act as antimicrobials. Supplemental files mentioned in the text can be obtained from http://exon.niaid.nih.gov/transcriptome.html#non_blood_feeding
- Published
- 2007
13. An insight into the sialome of the adult female mosquito Aedes albopictus
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Fabrizio Lombardo, Montserrat Mestres-Simon, José M. C. Ribeiro, Bruno Arcà, Ivo M.B. Francischetti, John F. Andersen, Van My Pham, Arca', Bruno, Lombardo, F, Francischetti, Imb, Pham, Vm, MESTRES SIMON, M, Andersen, Jf, and Ribeiro, Jmc
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Saliva ,Aedes albopictus ,hematophagy ,Proteome ,Hematophagy ,Molecular Sequence Data ,salivary proteins ,aedes albopictus ,mosquito ,Genes, Insect ,Biochemistry ,Salivary Glands ,Transcriptome ,Aedes ,Complementary DNA ,Animals ,Amino Acid Sequence ,Salivary Proteins and Peptides ,Molecular Biology ,Gene ,Gene Library ,Genetics ,saliva ,biology ,Gene Expression Profiling ,blood feeding ,transcriptome ,fungi ,biology.organism_classification ,Salivary protein ,Molecular biology ,Insect Science ,Sialome ,Insect Proteins ,Female - Abstract
To gain insight into the molecular repertoire of the adult female salivary glands of the tiger mosquito Aedes albopictus, we performed transcriptome and proteome analysis. cDNA clones were sequenced and assembled in clusters of related sequences and the corresponding genes assigned to one of three categories: housekeeping (H; 31%), secreted (S; 34%), or unknown (U; 35%) function. Among the putative secreted factors are proteins known to be widely distributed in the saliva of blood-sucking Diptera, such as D7 and antigen 5 family members, as well as proteins that are mosquito- or culicine-specific, i.e., the 30-kDa allergen or the 62-kDa and 34-kDa families, respectively. Expression of 15 of these salivary proteins was confirmed by Edman degradation. Tissue and sex specificity of selected transcripts were evaluated by RT-PCR and identified at least 32 genes whose expression is restricted or enriched in the female salivary glands of Ae. albopictus, whereas 17 additional genes were expressed in female glands and adult males but not in other tissues of adult females. For approximately one third of the genes analyzed, involvement in blood-feeding, sugar digestion, immune response, or other more generic physiological roles can be postulated; however, no functions can be suggested for the remaining sequences, which therefore likely represent either novel functions or novel molecules recruited during the evolution of hematophagy. Supplemental spreadsheets with hyperlinks to all sequences used in this manuscript are hyperlinked throughout the text and can be found at http://www.ncbi.nlm.nih.gov/projects/omes/#salivarytranscriptomes.
- Published
- 2007
14. The transcriptome of the salivary glands of the female western black-legged tick Ixodes pacificus (Acari: Ixodidae)
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John F. Andersen, Van My Pham, Ivo M.B. Francischetti, Ben J. Mans, José M. C. Ribeiro, Thomas N. Mather, and Robert S. Lane
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Male ,Signal peptide ,DNA, Complementary ,Transcription, Genetic ,Molecular Sequence Data ,Sequence alignment ,Biology ,Biochemistry ,Salivary Glands ,Article ,Conserved sequence ,Animals ,Amino Acid Sequence ,Molecular Biology ,Peptide sequence ,Conserved Sequence ,Phylogeny ,Gene Library ,Expressed Sequence Tags ,Genetics ,Expressed sequence tag ,Geography ,Ixodes ,Sequence Homology, Amino Acid ,biology.organism_classification ,Molecular biology ,United States ,Ixodes scapularis ,Insect Science ,Ixodes pacificus ,Proteome ,Insect Proteins ,Female ,Sequence Alignment - Abstract
Sequencing of an Ixodes pacificus salivary gland cDNA library yielded 1068 sequences with an average undetermined nucleotide of 1.9% and an average length of 487 base pairs. Assembly of the expressed sequence tags yielded 557 contigs, 138 of which appear to code for secreted peptides or proteins based on translation of a putative signal peptide. Based on the BLASTX similarity of these contigs to 66 matches of Ixodes scapularis peptide sequences, only 58% sequence identity was found, indicating a rapid divergence of salivary proteins as observed previously for mosquito and triatomine bug salivary proteins. Here we report 106 mostly full-length sequences that clustered in 16 different families: Basic-tail proteins rich in lysine in the carboxy-terminal, Kunitz-containing proteins (monolaris, ixolaris and penthalaris families), proline-rich peptides, 5-, 9.4- and 18.7-kDa proteins of unknown functions, in addition to metalloproteases (class PIII-like) similar to reprolysins. We also have found a family of disintegrins, named ixodegrins that display homology to variabilin, a GPIIb/IIIa antagonist from the tick Dermacentor variabilis. In addition, we describe peptides (here named ixostatins) that display remarkable similarities to the cysteine-rich domain of ADAMST-4 (aggrecanase). Many molecules were assigned in the lipocalin family (histamine-binding proteins); others appear to be involved in oxidant metabolism, and still others were similar to ixodid proteins such as the anticomplement ISAC. We also identified for the first time a neuropeptide-like protein (nlp-31) with GGY repeats that may have antimicrobial activity. In addition, 16 novel proteins without significant similarities to other tick proteins and 37 housekeeping proteins that may be useful for phylogenetic studies are described. Some of these proteins may be useful for studying vascular biology or the immune system, for vaccine development, or as immunoreagents to detect prior exposure to ticks. Electronic version of the manuscript can be found at http://www.ncbi.nlm.nih.gov/projects/omes/ .
- Published
- 2005
15. A Role for Insect Galectins in Parasite Survival
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Van My Pham, Marcelo Ramalho-Ortigao, Salvatore J. Turco, Jesus G. Valenzuela, David L. Sacks, Sanjeev Kumar, Carolina Barillas-Mury, Shaden Kamhawi, and Phillip G. Lawyer
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Galectins ,media_common.quotation_subject ,Molecular Sequence Data ,Insect ,Glycosphingolipids ,General Biochemistry, Genetics and Molecular Biology ,Host-Parasite Interactions ,Microbiology ,Species Specificity ,Cutaneous leishmaniasis ,Immunity ,parasitic diseases ,Cell Adhesion ,medicine ,Animals ,Parasite hosting ,Leishmania major ,Amino Acid Sequence ,Leishmaniasis ,Galectin ,media_common ,Leishmania ,biology ,Biochemistry, Genetics and Molecular Biology(all) ,fungi ,Midgut ,medicine.disease ,biology.organism_classification ,Insect Vectors ,Gastrointestinal Tract ,Vector (epidemiology) ,Immunology ,Psychodidae - Abstract
Insect galectins are associated with embryonic development or immunity against pathogens. Here, we show that they can be exploited by parasites for survival in their insect hosts. PpGalec, a tandem repeat galectin expressed in the midgut of the sand fly Phlebotomus papatasi, is used by Leishmania major as a receptor for mediating specific binding to the insect midgut, an event crucial for parasite survival, and accounts for species-specific vector competence. PpGalec is thus identified as a key molecule controlling vector competence for the most widely distributed form of cutaneous leishmaniasis in the Old World. In addition, these studies demonstrate the feasibility of using midgut receptors for parasite ligands as target antigens for transmission-blocking vaccines.
- Published
- 2004
16. Bitis gabonica (Gaboon viper) snake venom gland: toward a catalog for the full-length transcripts (cDNA) and proteins
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Van My-Pham, José M. C. Ribeiro, Jim Harrison, Ivo M.B. Francischetti, and Mark Garfield
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DNA, Complementary ,Molecular Sequence Data ,Sequence alignment ,Venom ,Computational biology ,L-Amino Acid Oxidase ,Article ,Phospholipases A ,Aprotinin ,Nucleotidases ,Sequence Analysis, Protein ,Viperidae ,biology.animal ,Genetics ,Disintegrin ,Animals ,Lectins, C-Type ,Amino Acid Sequence ,Growth Substances ,Phylogeny ,Gene Library ,Deoxyribonucleases ,Sequence Homology, Amino Acid ,biology ,cDNA library ,Serine Endopeptidases ,Proteins ,Sequence Analysis, DNA ,General Medicine ,biology.organism_classification ,Bitis ,Biochemistry ,Gaboon viper ,Snake venom ,Metalloproteases ,biology.protein ,Electrophoresis, Polyacrylamide Gel ,Amino Acid Oxidoreductases ,Sequence Alignment ,Snake Venoms - Abstract
The venom gland of the snake Bitis gabonica (Gaboon viper) was used for the first time to construct a unidirectional cDNA phage library followed by high-throughput sequencing and bioinformatic analysis. Hundreds of cDNAs were obtained and clustered into contigs. We found mostly novel full-length cDNA coding for metalloproteases (P-II and P-III classes), Lys49-phospholipase A2, serine proteases with essential mutations in the active site, Kunitz protease inhibitors, several C-type lectins, bradykinin-potentiating peptide, vascular endothelial growth factor, nucleotidases and nucleases, nerve growth factor, and L-amino acid oxidases. Two new members of the recently described short coding region family of disintegrin, displaying RGD and MLD motifs are reported. In addition, we have identified for the first time a cytokine-like molecule and a multi-Kunitz protease inhibitor in snake venoms. The CLUSTAL alignment and the unrooted cladograms for selected families of B. gabonica venom proteins are also presented. A significant number of sequences were devoid of database matches, suggesting that their biologic function remains to be identified. This paper also reports the N-terminus of the 15 most abundant venom proteins and the sequences matching their corresponding transcripts. The electronic version of this manuscript, available on request, contains spreadsheets with hyperlinks to FASTA-formatted files for each contig and the best match to the GenBank and Conserved Domain Databases, in addition to CLUSTAL alignments of each contig. We have thus generated a comprehensive catalog of the B. gabonica venom gland, containing for each secreted protein: (i) the predicted molecular weight, (ii) the predicted isoelectric point, (iii) the accession number, and (iv) the putative function. The role of these molecules is discussed in the context of the envenomation caused by the Gaboon viper.
- Published
- 2004
17. Exploring the sialome of the tick Ixodes scapularis
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Jesus G. Valenzuela, José M. C. Ribeiro, Ivo M.B. Francischetti, Thomas N. Mather, Van My Pham, and Mark Garfield
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Saliva ,DNA, Complementary ,Physiology ,Molecular Sequence Data ,Sequence alignment ,Aquatic Science ,Salivary Glands ,Conserved sequence ,stomatognathic system ,medicine ,Animals ,Protease Inhibitors ,Amino Acid Sequence ,Cysteine ,RNA, Messenger ,Cloning, Molecular ,Salivary Proteins and Peptides ,Molecular Biology ,Conserved Sequence ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Gene Library ,Genetics ,Binding Sites ,Ixodes ,Sequence Homology, Amino Acid ,Salivary gland ,biology ,cDNA library ,Computational Biology ,Metalloendopeptidases ,biology.organism_classification ,Molecular biology ,medicine.anatomical_structure ,Gene Expression Regulation ,Ixodes scapularis ,Insect Science ,Sialome ,Insect Proteins ,Electrophoresis, Polyacrylamide Gel ,Animal Science and Zoology ,Peptides ,Sequence Alignment - Abstract
SUMMARY To attempt description of the set of mRNA and protein (sialome) expressed in the salivary glands of the tick Ixodes scapularis, we randomly sequenced 735 clones of a full-length salivary gland cDNA library of this arthropod and performed Edman degradation of protein bands from salivary gland homogenates (SGH) and saliva separated by SDS-PAGE. The sequences were grouped into 410 clusters, of which 383 are not associated with known I. scapularis sequences. 15- and 17-protein bands from PAGE yielded amino-terminal information on the saliva and salivary gland gels,respectively. We attributed 19 of these sequences to translation products of the cDNA library. Full-length sequences were obtained for 87 clones. Among these protein sequences are several protease inhibitors of distinct classes,metalloproteases, novel proteins with histamine-binding domains, and several peptide families of unknown function displaying different conserved cysteine residues, many of which contain single Kunitz domains. This work provides information into the diversity of messages expressed in the salivary glands of I. scapularis, describes novel sequences that may be responsible for known biological activites, indicates further biological activities that may be present in I. scapularis saliva and identifies novel vaccine targets that may be used in Lyme disease prevention.
- Published
- 2002
18. Toward a description of the sialome of the adult female mosquito Aedes aegypti
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Ivo M.B. Francischetti, Jesus G. Valenzuela, Van My Pham, José M. C. Ribeiro, and Mark Garfield
- Subjects
Genetics ,DNA, Complementary ,Base Sequence ,Sequence Homology, Amino Acid ,biology ,Protein family ,cDNA library ,Molecular Sequence Data ,Aedes aegypti ,Serpin ,biology.organism_classification ,Biochemistry ,Salivary Glands ,Aedes ,Insect Science ,Sialome ,Complementary DNA ,Proteome ,Animals ,Insect Proteins ,Female ,Amino Acid Sequence ,Molecular Biology ,Bombyx - Abstract
To describe the set of mRNA and protein expressed in the salivary glands (sialome) of Aedes aegypti mosquitoes, we randomly sequenced a full-length cDNA library of this insect and performed Edman degradation of PVDF-transferred protein bands from salivary homogenates. We found 238 cDNA clusters which contained those coding for 10 of the 11 proteins found by aminoterminal degradation. All six previously described salivary proteins were found in this library. Full-length sequences of 32 novel cDNA sequences are reported, one of which is the product of a transposable element. Among the 31 novel protein sequences are 4 additional members of the D7 protein family; 4 novel members of the antigen 5 family (a protein family not reported in Aedes); a novel serpin; a novel member of the 30-kDa allergen of Ae. Aegypti; a secreted calreticulin; 2 proteins similar to mammalian angiopoietins; adenosine deaminase; purine hydrolase; lysozyme; a C-type lectin; 3 serine proteases, including one with high similarity to Bombyx prophenoloxidase activating enzyme; 2 proteins related to invertebrate immunity; and several sequences that have no significant matches to known proteins. The possible role of these proteins in blood and sugar feeding by the mosquito is discussed.
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- 2002
19. An Insight into the Sialotranscriptome of Triatoma matogrossensis, a Kissing Bug Associated with Fogo Selvagem in South America
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Valeria Aoki, Teresa C.F. Assumpção, Jesus G. Valenzuela, Donald P. Eaton, Van My Pham, Gunter Hans-Filho, Luis A. Diaz, Ivo M.B. Francischetti, Evandro A. Rivitti, and José M. C. Ribeiro
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Molecular Sequence Data ,Biology ,Salivary Glands ,Autoimmune Diseases ,Virology ,Complementary DNA ,medicine ,Animals ,Amino Acid Sequence ,Triatoma ,Pemphigus foliaceus ,Gene Library ,Autoimmune disease ,Genetics ,cDNA library ,Host (biology) ,Computational Biology ,Sequence Analysis, DNA ,Articles ,medicine.disease ,biology.organism_classification ,Hemiptera ,Insect Vectors ,Infectious Diseases ,Vector (epidemiology) ,Multigene Family ,Insect Proteins ,Parasitology ,Transcriptome ,Brazil ,Pemphigus - Abstract
Triatoma matogrossensis is a Hemiptera that belongs to the oliveirai complex, a vector of Chagas' disease that feeds on vertebrate blood in all life stages. Hematophagous insects' salivary glands (SGs) produce potent pharmacologic compounds that counteract host hemostasis, including anticlotting, antiplatelet, and vasodilatory molecules. Exposure to T. matogrossensis was also found to be a risk factor associated with the endemic form of the autoimmune skin disease pemphigus foliaceus, which is described in the same regions where Chagas' disease is observed in Brazil. To obtain a further insight into the salivary biochemical and pharmacologic diversity of this kissing bug and to identify possible allergens that might be associated with this autoimmune disease, a cDNA library from its SGs was randomly sequenced. We present the analysis of a set of 2,230 (SG) cDNA sequences, 1,182 of which coded for proteins of a putative secretory nature.
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- 2012
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20. An insight into the sialotranscriptome of the cat flea, Ctenocephalides felis
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Teresa C.F. Assumpção, Ivo M.B. Francischetti, Dongying Ma, Patricia H. Alvarenga, Van My Pham, John F. Andersen, José M. C. Ribeiro, and Kevin R. Macaluso
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Flea ,Animal Evolution ,animal diseases ,Anti-Inflammatory Agents ,lcsh:Medicine ,Salivary Glands ,Transcriptomes ,0302 clinical medicine ,Xenopsylla ,lcsh:Science ,Phylogeny ,Genetics ,0303 health sciences ,Multidisciplinary ,biology ,Salivary gland ,Genomics ,Infectious Diseases ,medicine.anatomical_structure ,Sialome ,Medicine ,Sequence Analysis ,Research Article ,Nematocera ,Cat flea ,Molecular Sequence Data ,030231 tropical medicine ,Zoology ,03 medical and health sciences ,Genome Analysis Tools ,medicine ,Animals ,Amino Acid Sequence ,Salivary Proteins and Peptides ,Saliva ,Biology ,Blood Coagulation ,Ctenocephalides ,Gene Library ,030304 developmental biology ,Evolutionary Biology ,Sequence Homology, Amino Acid ,Coagulants ,Gene Expression Profiling ,Felis ,lcsh:R ,Computational Biology ,Vectors and Hosts ,biology.organism_classification ,bacterial infections and mycoses ,Organismal Evolution ,Phosphoric Monoester Hydrolases ,Rats ,Cats ,lcsh:Q ,Genome Expression Analysis ,Transcriptome ,Entomology ,Sequence Alignment - Abstract
Background: Saliva of hematophagous arthropods contains a diverse mixture of compounds that counteracts host hemostasis. Immunomodulatory and antiinflammatory components are also found in these organisms’ saliva. Blood feeding evolved at least ten times within arthropods, providing a scenario of convergent evolution for the solution of the salivary potion. Perhaps because of immune pressure from hosts, the salivary proteins of related organisms have considerable divergence, and new protein families are often found within different genera of the same family or even among subgenera. Fleas radiated with their vertebrate hosts, including within the mammal expansion initiated 65 million years ago. Currently, only one flea species–the rat flea Xenopsylla cheopis–has been investigated by means of salivary transcriptome analysis to reveal salivary constituents, or sialome. We present the analysis of the sialome of cat flea Ctenocephaides felis. Methodology and Critical Findings: A salivary gland cDNA library from adult fleas was randomly sequenced, assembled, and annotated. Sialomes of cat and rat fleas have in common the enzyme families of phosphatases (inactive), CD-39-type apyrase, adenosine deaminases, and esterases. Antigen-5 members are also common to both sialomes, as are defensins. FSI/Cys7 and the 8-Cys families of peptides are also shared by both fleas and are unique to these organisms. The Gly-His-rich peptide similar to holotricin was found only in the cat flea, as were the abundantly expressed Cys-less peptide and a novel short peptide family. Conclusions/Significance: Fleas, in contrast to bloodsucking Nematocera (mosquitoes, sand flies, and black flies), appear to concentrate a good portion of their sialome in small polypeptides, none of which have a known function but could act as inhibitors of hemostasis or inflammation. They are also unique in expansion of a phosphatase family that appears to be deficient of enzyme activity and has an unknown function.
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- 2012
21. Structure and Function of a 'Yellow' Protein from Saliva of the Sand Fly Lutzomyia longipalpis That Confers Protective Immunity against Leishmania major Infection*
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John F. Andersen, Shaden Kamhawi, David Reynoso, Van My Pham, Clarissa Teixeira, Dia Eldin Elnaiem, Xueqing Xu, Regis Gomes, Nicolas Collin, Jesus G. Valenzuela, Fabiano Oliveira, B.W. Chang, and José M. C. Ribeiro
- Subjects
Saliva ,Antigenicity ,Biogenic Amines ,Leishmaniasis, Cutaneous ,Plasma protein binding ,Ligand Binding Protein ,Biology ,Biochemistry ,Microbiology ,Proinflammatory cytokine ,Interferon-gamma ,Mice ,Protein structure ,Antigen ,Animals ,Leishmania major ,Hypersensitivity, Delayed ,Molecular Biology ,Inflammation ,Cell Biology ,Th1 Cells ,biology.organism_classification ,Virology ,Recombinant Proteins ,Protein Structure, Tertiary ,Protein Structure and Folding ,Insect Proteins ,Female ,Psychodidae - Abstract
LJM11, an abundant salivary protein from the sand fly Lutzomyia longipalpis, belongs to the insect "yellow" family of proteins. In this study, we immunized mice with 17 plasmids encoding L. longiplapis salivary proteins and demonstrated that LJM11 confers protective immunity against Leishmania major infection. This protection correlates with a strong induction of a delayed type hypersensitivity (DTH) response following exposure to L. longipalpis saliva. Additionally, splenocytes of exposed mice produce IFN-γ upon stimulation with LJM11, demonstrating the systemic induction of Th1 immunity by this protein. In contrast to LJM11, LJM111, another yellow protein from L. longipalpis saliva, does not produce a DTH response in these mice, suggesting that structural or functional features specific to LJM11 are important for the induction of a robust DTH response. To examine these features, we used calorimetric analysis to probe a possible ligand binding function for the salivary yellow proteins. LJM11, LJM111, and LJM17 all acted as high affinity binders of prohemostatic and proinflammatory biogenic amines, particularly serotonin, catecholamines, and histamine. We also determined the crystal structure of LJM11, revealing a six-bladed β-propeller fold with a single ligand binding pocket located in the central part of the propeller structure on one face of the molecule. A hypothetical model of LJM11 suggests a positive electrostatic potential on the face containing entry to the ligand binding pocket, whereas LJM111 is negative to neutral over its entire surface. This may be the reason for differences in antigenicity between the two proteins.
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- 2011
22. An insight into the sialotranscriptome of Simulium nigrimanum, a black fly associated with fogo selvagem in South America
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Van My Pham, Evandro A. Rivitti, Kent D. Barbian, Valeria Aoki, Jesus G. Valenzuela, Luis A. Diaz, Donald P. Eaton, Lindsay Kleeman, José M. C. Ribeiro, Gunter Hans-Filho, and Amanda J. Favreau
- Subjects
media_common.quotation_subject ,Molecular Sequence Data ,Zoology ,Insect ,Disease ,Biology ,medicine.disease_cause ,Desmoglein ,Autoimmunity ,Phylogenetics ,Virology ,medicine ,Animals ,Humans ,Simuliidae ,Amino Acid Sequence ,Saliva ,Pemphigus foliaceus ,Phylogeny ,media_common ,integumentary system ,fungi ,Articles ,South America ,medicine.disease ,biology.organism_classification ,Pemphigus ,Infectious Diseases ,Gene Expression Regulation ,Immunology ,Insect Proteins ,Parasitology ,Female ,Black fly - Abstract
Pemphigus foliaceus is a life threatening skin disease that is associated with autoimmunity to desmoglein, a skin protein involved in the adhesion of keratinocytes. This disease is endemic in certain areas of South America, suggesting the mediation of environmental factors triggering autoimmunity. Among the possible environmental factors, exposure to bites of black flies, in particular Simulium nigrimanum has been suggested. In this work, we describe the sialotranscriptome of adult female S. nigrimanum flies. It reveals the complexity of the salivary potion of this insect, comprised by over 70 distinct genes within over 30 protein families, including several novel families, even when compared with the previously described sialotranscriptome of the autogenous black fly, S. vittatum. The uncovering of this sialotranscriptome provides a platform for testing pemphigus patient sera against recombinant salivary proteins from S. nigrimanum and for the discovery of novel pharmacologically active compounds.
- Published
- 2010
23. The salivary gland transcriptome of the neotropical malaria vector Anopheles darlingi reveals accelerated evolution of genes relevant to hematophagy
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Eric Calvo, Osvaldo Marinotti, José M. C. Ribeiro, John F. Andersen, and Van My Pham
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Saliva ,lutzomyia-longipalpis ,triatoma-infestans ,platelet-aggregation inhibitor ,Genes, Insect ,stephensi mosquito ,adult female mosquito ,Salivary Glands ,Transcriptome ,Cluster Analysis ,Expressed Sequence Tags ,Genetics ,biology ,Salivary gland ,Anopheles ,Life Sciences ,medicine.anatomical_structure ,Female ,Subgenus ,Sequence Analysis ,Research Article ,Biotechnology ,Old World ,lcsh:QH426-470 ,Evolution ,Hematophagy ,lcsh:Biotechnology ,Molecular Sequence Data ,Zoology ,Evolution, Molecular ,aedes-aegypti ,stomatognathic system ,lcsh:TP248.13-248.65 ,antibody-response ,parasitic diseases ,leech hirudo-medicinalis ,medicine ,Animals ,Amino Acid Sequence ,Salivary Proteins and Peptides ,Gene Library ,Gene Expression Profiling ,Molecular ,Sequence Analysis, DNA ,DNA ,medicine.disease ,biology.organism_classification ,lcsh:Genetics ,Genes ,Insect ,Sequence Alignment ,Malaria ,rich secretory proteins - Abstract
Background Mosquito saliva, consisting of a mixture of dozens of proteins affecting vertebrate hemostasis and having sugar digestive and antimicrobial properties, helps both blood and sugar meal feeding. Culicine and anopheline mosquitoes diverged ~150 MYA, and within the anophelines, the New World species diverged from those of the Old World ~95 MYA. While the sialotranscriptome (from the Greek sialo, saliva) of several species of the Cellia subgenus of Anopheles has been described thoroughly, no detailed analysis of any New World anopheline has been done to date. Here we present and analyze data from a comprehensive salivary gland (SG) transcriptome of the neotropical malaria vector Anopheles darlingi (subgenus Nyssorhynchus). Results A total of 2,371 clones randomly selected from an adult female An. darlingi SG cDNA library were sequenced and used to assemble a database that yielded 966 clusters of related sequences, 739 of which were singletons. Primer extension experiments were performed in selected clones to further extend sequence coverage, allowing for the identification of 183 protein sequences, 114 of which code for putative secreted proteins. Conclusion Comparative analysis of sialotranscriptomes of An. darlingi and An. gambiae reveals significant divergence of salivary proteins. On average, salivary proteins are only 53% identical, while housekeeping proteins are 86% identical between the two species. Furthermore, An. darlingi proteins were found that match culicine but not anopheline proteins, indicating loss or rapid evolution of these proteins in the old world Cellia subgenus. On the other hand, several well represented salivary protein families in old world anophelines are not expressed in An. darlingi.
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- 2009
24. Insight into the sialome of the Black Fly, Simulium vittatum
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José M. C. Ribeiro, Donald E. Champagne, Zhaojing Meng, John F. Andersen, and Van My Pham
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Ceratopogonidae ,Proteome ,Hematophagy ,media_common.quotation_subject ,Molecular Sequence Data ,Zoology ,Context (language use) ,Insect ,Biochemistry ,Salivary Glands ,Article ,Corethrellidae ,stomatognathic system ,Tandem Mass Spectrometry ,parasitic diseases ,Animals ,Simuliidae ,Psychodidae ,Amino Acid Sequence ,Saliva ,Phylogeny ,media_common ,Gene Library ,biology ,Ecology ,fungi ,General Chemistry ,biology.organism_classification ,Sialome ,Electrophoresis, Polyacrylamide Gel ,Black fly - Abstract
Adaptation to vertebrate blood feeding includes development of a salivary ‘magic potion’ that can disarm host hemostasis and inflammatory reactions. Within the lower Diptera, a vertebrate blood-sucking mode evolved in the Psychodidae (sand flies), Culicidae (mosquitoes), Ceratopogonidae (biting midges), Simuliidae (black flies), and in the frog-feeding Corethrellidae. Sialotranscriptome analyses from several species of mosquitoes and sand flies and from one biting midge indicate divergence in the evolution of the blood-sucking salivary potion, manifested in the finding of many unique proteins within each insect family, and even genus. Gene duplication and divergence events are highly prevalent, possibly driven by vertebrate host immune pressure. Within this framework, we describe the sialome (from Greek sialo, saliva) of the black fly Simulium vittatum and discuss the findings within the context of the protein families found in other blood-sucking Diptera. Sequences and results of Blast searches against several protein family databases are given in Supplemental Tables S1 and S2, which can be obtained from http://exon.niaid.nih.gov/transcriptome/S_vittatum/T1/SV-tb1.zip and http://exon.niaid.nih.gov/transcriptome/S_vittatum/T2/SV-tb2.zip.
- Published
- 2009
25. An insight into the sialotranscriptome of the non-blood feeding Toxorhynchites amboinensis mosquito
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Eric Calvo, José M. C. Ribeiro, and Van My Pham
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Male ,Proteomics ,Saliva ,DNA, Complementary ,Hematophagy ,Zoology ,Biochemistry ,Article ,Salivary Glands ,Transcriptome ,Evolution, Molecular ,Animals ,Sugar ,Molecular Biology ,biology ,Adult female ,Gene Expression Profiling ,Mucins ,Feeding Behavior ,biology.organism_classification ,Blood feeding ,Molecular biology ,Culicidae ,Insect Science ,Multigene Family ,Toxorhynchites ,Insect Proteins ,Female ,Toxorhynchites amboinensis ,Peptides - Abstract
All adult mosquitoes take sugar meals, and most adult females also take blood meals to develop eggs. Salivary glands (SG) of males are thus much smaller and do not contain many of the antihemostatic and antiinflammatory compounds found in females. In the past 5 years, transcriptome analyses have identified nearly 70 different genes expressed in adult female SG. For most of these, no function can be assigned in either blood or sugar feeding. Exceptionally, Toxorhynchites mosquitoes are unusual in that they never feed on blood, and the SG of adults are identical in both sexes. Transcriptome analysis of the adult SG of this mosquito was performed to increase knowledge of the evolution of blood feeding--and to identify polypeptide families associated with sugar feeding--in mosquitoes.
- Published
- 2008
26. Comparative sialomics between hard and soft ticks: Implications for the evolution of blood-feeding behavior
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Jesus G. Valenzuela, Van My Pham, Ivo M.B. Francischetti, Mark Garfield, John F. Andersen, Ben J. Mans, Tom G. Schwan, Carl H. Hammer, and José M. C. Ribeiro
- Subjects
Proteomics ,Protein family ,Protein domain ,Molecular Sequence Data ,Argas ,Biology ,Tick ,Biochemistry ,Peptide Mapping ,Article ,Salivary Glands ,Conserved sequence ,Charadriiformes ,Gene Duplication ,medicine ,Animals ,Electrophoresis, Gel, Two-Dimensional ,Amino Acid Sequence ,Saliva ,Molecular Biology ,Orbivirus ,Conserved Sequence ,Gene Library ,Genetics ,Salivary gland ,Sequence Homology, Amino Acid ,Gene Expression Profiling ,CDNA Library Construction ,Feeding Behavior ,biology.organism_classification ,Biological Evolution ,Reoviridae Infections ,medicine.anatomical_structure ,Insect Science ,Sialome ,Thrombospondins ,Chromatography, Liquid - Abstract
Ticks evolved various mechanisms to modulate their host's hemostatic and immune defenses. Differences in the anti-hemostatic repertoires suggest that hard and soft ticks evolved anti-hemostatic mechanisms independently, but raise questions on the conservation of salivary gland proteins in the ancestral tick lineage. To address this issue, the sialome (salivary gland secretory proteome) from the soft tick, Argas monolakensis, was determined by proteomic analysis and cDNA library construction of salivary glands from fed and unfed adult female ticks. The sialome is composed of approximately 130 secretory proteins of which the most abundant protein folds are the lipocalin, BTSP, BPTI and metalloprotease families which also comprise the most abundant proteins found in the salivary glands. Comparative analysis indicates that the major protein families are conserved in hard and soft ticks. Phylogenetic analysis shows, however, that most gene duplications are lineage specific, indicating that the protein families analyzed possibly evolved most of their functions after divergence of the two major tick families. In conclusion, the ancestral tick may have possessed a simple (few members for each family), but diverse (many different protein families) salivary gland protein domain repertoire.
- Published
- 2007
27. Exploring the midgut transcriptome of Phlebotomus papatasi: comparative analysis of expression profiles of sugar-fed, blood-fed and Leishmania major-infected sandflies
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Marcelo Ramalho-Ortigao, Jesus G. Valenzuela, Shaden Kamhawi, Van-My Pham, Phillip G. Lawyer, Ryan C. Jochim, and Jennifer M. Anderson
- Subjects
Sucrose ,DNA, Complementary ,Transcription, Genetic ,lcsh:QH426-470 ,lcsh:Biotechnology ,030231 tropical medicine ,Polymerase Chain Reaction ,Transcriptome ,03 medical and health sciences ,0302 clinical medicine ,Computer Systems ,lcsh:TP248.13-248.65 ,Complementary DNA ,Genetics ,Animals ,Leishmania major ,RNA, Messenger ,Peritrophic matrix ,Intestinal Mucosa ,Gene Library ,030304 developmental biology ,0303 health sciences ,biology ,cDNA library ,Gene Expression Profiling ,Midgut ,Postprandial Period ,biology.organism_classification ,Molecular biology ,Insect Vectors ,Sandfly ,lcsh:Genetics ,Blood ,Gene Expression Regulation ,Organ Specificity ,Phlebotomus ,Insect Proteins ,DNA microarray ,Research Article ,Biotechnology - Abstract
Background In sandflies, the blood meal is responsible for the induction of several physiologic processes that culminate in egg development and maturation. During blood feeding, infected sandflies are also able to transmit the parasite Leishmania to a suitable host. Many blood-induced molecules play significant roles during Leishmania development in the sandfly midgut, including parasite killing within the endoperitrophic space. In this work, we randomly sequenced transcripts from three distinct high quality full-length female Phlebotomus papatasi midgut-specific cDNA libraries from sugar-fed, blood-fed and Leishmania major-infected sandflies. Furthermore, we compared the transcript expression profiles from the three different cDNA libraries by customized bioinformatics analysis and validated these findings by semi-quantitative PCR and real-time PCR. Results Transcriptome analysis of 4010 cDNA clones resulted in the identification of the most abundant P. papatasi midgut-specific transcripts. The identified molecules included those with putative roles in digestion and peritrophic matrix formation, among others. Moreover, we identified sandfly midgut transcripts that are expressed only after a blood meal, such as microvilli associated-like protein (PpMVP1, PpMVP2 and PpMVP3), a peritrophin (PpPer1), trypsin 4 (PpTryp4), chymotrypsin PpChym2, and two unknown proteins. Of interest, many of these overabundant transcripts such as PpChym2, PpMVP1, PpMVP2, PpPer1 and PpPer2 were of lower abundance when the sandfly was given a blood meal in the presence of L. major. Conclusion This tissue-specific transcriptome analysis provides a comprehensive look at the repertoire of transcripts present in the midgut of the sandfly P. papatasi. Furthermore, the customized bioinformatic analysis allowed us to compare and identify the overall transcript abundance from sugar-fed, blood-fed and Leishmania-infected sandflies. The suggested upregulation of specific transcripts in a blood-fed cDNA library were validated by real-time PCR, suggesting that this customized bioinformatic analysis is a powerful and accurate tool useful in analysing expression profiles from different cDNA libraries. Additionally, the findings presented in this work suggest that the Leishmania parasite is modulating key enzymes or proteins in the gut of the sandfly that may be beneficial for its establishment and survival.
- Published
- 2007
28. An insight into the sialome of the oriental rat flea, Xenopsylla cheopis (Rots)
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Thomas P. Conrads, Van My Pham, David A. Lucas, John F. Andersen, Timothy D. Veenstra, José M. C. Ribeiro, and B. Joseph Hinnebusch
- Subjects
Flea ,Proteome ,lcsh:QH426-470 ,Hematophagy ,lcsh:Biotechnology ,animal diseases ,media_common.quotation_subject ,Cat flea ,Insect ,Biology ,Salivary Glands ,Rodent Diseases ,Transcriptome ,Oriental rat flea ,Tandem Mass Spectrometry ,lcsh:TP248.13-248.65 ,Genetics ,Animals ,Humans ,Amino Acid Sequence ,Saliva ,Phylogeny ,media_common ,Apyrase ,bacterial infections and mycoses ,biology.organism_classification ,Phosphoric Monoester Hydrolases ,Rats ,lcsh:Genetics ,Sialome ,Cats ,Siphonaptera ,Sequence Alignment ,Xenopsylla ,Software ,Research Article ,Biotechnology - Abstract
Background The salivary glands of hematophagous animals contain a complex cocktail that interferes with the host hemostasis and inflammation pathways, thus increasing feeding success. Fleas represent a relatively recent group of insects that evolved hematophagy independently of other insect orders. Results Analysis of the salivary transcriptome of the flea Xenopsylla cheopis, the vector of human plague, indicates that gene duplication events have led to a large expansion of a family of acidic phosphatases that are probably inactive, and to the expansion of the FS family of peptides that are unique to fleas. Several other unique polypeptides were also uncovered. Additionally, an apyrase-coding transcript of the CD39 family appears as the candidate for the salivary nucleotide hydrolysing activity in X.cheopis, the first time this family of proteins is found in any arthropod salivary transcriptome. Conclusion Analysis of the salivary transcriptome of the flea X. cheopis revealed the unique pathways taken in the evolution of the salivary cocktail of fleas. Gene duplication events appear as an important driving force in the creation of salivary cocktails of blood feeding arthropods, as was observed with ticks and mosquitoes. Only five other flea salivary sequences exist at this time at NCBI, all from the cat flea C. felis. This work accordingly represents the only relatively extensive sialome description of any flea species. Sialotranscriptomes of additional flea genera will reveal the extent that these novel polypeptide families are common throughout the Siphonaptera.
- Published
- 2007
29. An insight into the sialome of Anopheles funestus reveals an emerging pattern in anopheline salivary protein families
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Adama Dao, José M. C. Ribeiro, Eric Calvo, and Van My Pham
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Nematocera ,Aedes albopictus ,Hematophagy ,Anopheles gambiae ,Molecular Sequence Data ,Genes, Insect ,Aedes aegypti ,Biology ,Biochemistry ,Salivary Glands ,Article ,parasitic diseases ,Anopheles ,Animals ,Amino Acid Sequence ,Salivary Proteins and Peptides ,Molecular Biology ,Anopheles stephensi ,Gene Library ,Genetics ,Expressed Sequence Tags ,fungi ,Sequence Analysis, DNA ,biology.organism_classification ,Insect Science ,Sialome ,Insect Proteins ,Female - Abstract
Anopheles funestus , together with Anopheles gambiae , is responsible for most malaria transmission in sub-Saharan Africa, but little is known about molecular aspects of its biology. To investigate the salivary repertoire of this mosquito, we randomly sequenced 916 clones from a salivary-gland cDNA library from adult female F1 offspring of field-caught An. funestus . Thirty-three protein sequences, mostly full-length transcripts, are predicted to be secreted salivary proteins. We additionally describe 25 full-length housekeeping-associated transcripts. In accumulating mosquito sialotranscriptome information—which includes An. gambiae , Anopheles stephensi , Anopheles darlingi , Aedes aegypti , Aedes albopictus , Culex pipiens quinquefasciatus , and now An. funestus —a pattern is emerging. First, ubiquitous protein families are recruited for a salivary role, such as members of the antigen-5 family and enzymes of nucleotide and carbohydrate catabolism. Second, a group of protein families exclusive to blood-feeding Nematocera includes the abundantly expressed D7 proteins also found in sand flies and Culicoides. A third group of proteins, only found in Culicidae, includes the 30 kDa allergen family and several mucins. Finally, 10 protein and peptide families, five of them multigenic, are exclusive to anophelines. Among these proteins may reside good epidemiological markers to measure human exposure to anopheline species such as An. funestus and An. gambiae .
- Published
- 2006
30. Comparative genomics of insect juvenile hormone biosynthesis
- Author
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José M. C. Ribeiro, René Feyereisen, Salvador Hernández-Martínez, Fernando G. Noriega, Van My Pham, J.F. Koener, and Jesus G. Valenzuela
- Subjects
Insecta ,Anopheles gambiae ,ved/biology.organism_classification_rank.species ,Molecular Sequence Data ,Cockroaches ,Aedes aegypti ,Biochemistry ,Article ,Anopheles albimanus ,Corpora Allata ,Aedes ,biology.animal ,Anopheles ,Animals ,Amino Acid Sequence ,Molecular Biology ,Genetics ,Expressed Sequence Tags ,Cockroach ,Expressed sequence tag ,biology ,ved/biology ,Diploptera punctata ,fungi ,Genomics ,biology.organism_classification ,Juvenile Hormones ,Insect Science ,Juvenile hormone ,Insect Proteins ,Drosophila ,Corpus allatum ,Sequence Alignment ,Signal Transduction - Abstract
The biosynthesis of insect juvenile hormone (JH) and its neuroendocrine control are attractive targets for chemical control of insect pests and vectors of disease. To facilitate the molecular study of JH biosynthesis, we analyzed ESTs from the glands producing JH, the corpora allata (CA) in the cockroach Diploptera punctata, an insect long used as a physiological model species and compared them with ESTs from the CA of the mosquitoes Aedes aegypti and Anopheles albimanus. The predicted genes were analyzed according to their probable functions with the Gene Ontology classification, and compared to Drosophila and Anopheles gambiae genes. A large number of reciprocal matches in the cDNA libraries of cockroach and mosquito CA were found. These matches defined known and suspected enzymes of the JH biosynthetic pathway, but also several proteins associated with signal transduction that might play a role in the modulation of JH synthesis by neuropeptides. The identification in both cockroach and mosquito CA of homologs of the small ligand binding proteins from insects, Takeout/JH binding protein and retinol-binding protein highlights a hitherto unsuspected complexity of metabolite trafficking, perhaps JH precursor trafficking, in these endocrine glands. Furthermore, many reciprocal matches for genes of unknown function may provide a fertile ground for an in-depth study of allatal-specific cell physiology. ESTs are deposited in GenBank under the accession numbers DV 017592-DV 018447 (Diploptera punctata); DR 746432-DV 747949 (Aedes aegypti); and DR 747950-DR 748310 (Anopheles albimanus).
- Published
- 2006
31. The sialotranscriptome of adult male Anopheles gambiae mosquitoes
- Author
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Bruno Arcà, José M. C. Ribeiro, Eric Calvo, Van My Pham, Fabrizio Lombardo, Calvo, E, Pham, Vm, Lombardo, F, Arca', Bruno, and Ribeiro, Jcm
- Subjects
Male ,Saliva ,medicine.medical_specialty ,Anopheles gambiae ,salivary glands ,sugar feeding ,antimicrobials ,Physiology ,Biology ,Biochemistry ,Mosquito ,Internal medicine ,Anopheles ,medicine ,Animals ,RNA, Messenger ,Molecular Biology ,Defensin ,Salivary gland ,cDNA library ,Sugar feeding ,Computational Biology ,Blood meal ,biology.organism_classification ,Sialome ,Endocrinology ,medicine.anatomical_structure ,Insect Science ,Antimicrobial ,Digestion - Abstract
Adult mosquitoes feed on sugary meals to obtain energy for flight and other activities, while anautogenous females take a blood meal to develop eggs. Accordingly, female but not male salivary glands possess several antihemostatic components to facilitate acquisition of blood, while both sexes have activities related to digestion of the sugar meal as well as antimicrobials to maintain meal integrity. Studies on adult female sialotranscriptomes indicated a set of approximately 70 proteins and peptides possibly secreted in saliva that presumably facilitate sugar and blood meals. Most of these proteins have no known function, so no assignment to blood or sugar feeding is possible. Microarray and RT-PCR studies attempted to identify sex specificity of these transcripts. Our present study complements the previous data set, comparing approximately 1000 randomly sequenced clones of a male adult salivary gland cDNA library with the female set. Statistically significant differences were found in 16 transcripts found exclusively in the female library, 4 transcripts significantly female enriched but also found in male glands, and 6 transcripts enriched in male glands. We additionally found a transcript in male salivary glands with a trypsin inhibitor-like (TIL) domain that we presume codes for an antimicrobial peptide; a novel defensin transcript was also found in the male sialotranscriptome. Supplemental tables can be found at.
- Published
- 2006
32. Vaccine
- Author
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Van My Pham, Jerrold M. Ward, Laurent Fischer, Jesus G. Valenzuela, Amy E. Seitz, Pierre M. Guigal, Shaden Kamhawi, and Fabiano Oliveira
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DNA vaccine ,Cellular immunity ,DNA, Complementary ,Molecular Sequence Data ,Drug Evaluation, Preclinical ,Enzyme-Linked Immunosorbent Assay ,Biology ,Salivary Glands ,DNA vaccination ,Mice ,Plasmid ,Antigen ,Sequence Analysis, Protein ,Complementary DNA ,Sand fly saliva ,Vaccines, DNA ,Animals ,Genomic library ,Hypersensitivity, Delayed ,Amino Acid Sequence ,Salivary Proteins and Peptides ,Reverse antigen screening ,Gene Library ,Vaccines ,Delayed-type hypersensitivity ,General Veterinary ,General Immunology and Microbiology ,cDNA library ,Public Health, Environmental and Occupational Health ,Cellular immune responses ,Computational Biology ,Molecular biology ,Immunoglobulin A ,Insect Vectors ,Infectious Diseases ,Delayed hypersensitivity ,Immunoglobulin G ,Phlebotomus ,Antibody Formation ,Molecular Medicine ,Electrophoresis, Polyacrylamide Gel ,Female ,Sand fly transcripts - Abstract
Texto completo: acesso restrito. p. 374–390 Submitted by Edileide Reis (leyde-landy@hotmail.com) on 2013-09-04T12:44:33Z No. of bitstreams: 1 1-s2.0-S0264410X05007498-main.pdf: 1557023 bytes, checksum: 3dc09a1a592f8a218598368d50d4f03b (MD5) Approved for entry into archive by Rodrigo Meirelles (rodrigomei@ufba.br) on 2013-11-16T13:14:34Z (GMT) No. of bitstreams: 1 1-s2.0-S0264410X05007498-main.pdf: 1557023 bytes, checksum: 3dc09a1a592f8a218598368d50d4f03b (MD5) Made available in DSpace on 2013-11-16T13:14:34Z (GMT). No. of bitstreams: 1 1-s2.0-S0264410X05007498-main.pdf: 1557023 bytes, checksum: 3dc09a1a592f8a218598368d50d4f03b (MD5) Previous issue date: 2006 Delayed-type hypersensitivity (DTH) response to arthropod vector salivary proteins is associated with protection against pathogen transmission. Massive cDNA sequencing, high-throughput DNA plasmid construction and DNA immunisation were used to identify twelve DTH inducing proteins isolated from a Phlebotomus ariasi salivary gland cDNA library. Additionally, nine P. ariasi DNA plasmids produced specific anti-saliva antibodies, four of these showed a Th1 immune response while the other two exhibited a Th2 profile as determined by IgG2a and IgG1 isotype switching, respectively. In order to validate the specificity of sand fly DNA plasmids, mice previously exposed to sand fly saliva were intradermally injected once with selected P. ariasi plasmids and a specific DTH response consisting of infiltration of mononuclear cells in varying proportions was observed at 24 and 48 h. This approach can help to identify DTH inducing proteins that may be related to host protection against vector-borne diseases or other disease agents where cellular immune response is protective.
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- 2005
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33. Identification of the most abundant secreted proteins from the salivary glands of the sand fly Lutzomyia longipalpis, vector of Leishmania chagasi
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Mark Garfield, Jesus G. Valenzuela, Van My Pham, and Edgar Rowton
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Proteomics ,Physiology ,Sequence analysis ,Molecular Sequence Data ,Aquatic Science ,Salivary Glands ,Complementary DNA ,Animals ,Cluster Analysis ,Amino Acid Sequence ,Salivary Proteins and Peptides ,Molecular Biology ,Peptide sequence ,Ecology, Evolution, Behavior and Systematics ,DNA Primers ,Gene Library ,Leishmania ,biology ,Base Sequence ,cDNA library ,Computational Biology ,Leishmania chagasi ,Sequence Analysis, DNA ,biology.organism_classification ,Molecular biology ,Secretory protein ,Biochemistry ,Insect Science ,Animal Science and Zoology ,Electrophoresis, Polyacrylamide Gel ,Psychodidae ,Sequence Alignment - Abstract
SUMMARYUsing massive cDNA sequencing, proteomics and customized computational biology approaches, we have isolated and identified the most abundant secreted proteins from the salivary glands of the sand fly Lutzomyia longipalpis. Out of 550 randomly isolated clones from a full-length salivary gland cDNA library, we found 143 clusters or families of related proteins. Out of these 143 families, 35 were predicted to be secreted proteins. We confirmed, by Edman degradation of Lu. longipalpissalivary proteins, the presence of 17 proteins from this group. Full-length sequence for 35 cDNA messages for secretory proteins is reported, including an RGD-containing peptide, three members of the yellow-related family of proteins, maxadilan, a PpSP15-related protein, six members of a family of putative anticoagulants, an antigen 5-related protein, a D7-related protein, a cDNA belonging to the Cimex apyrase family of proteins, a protein homologous to a silk protein with amino acid repeats resembling extracellular matrix proteins, a 5′-nucleotidase, a peptidase, a palmitoyl-hydrolase, an endonuclease, nine novel peptides and four different groups of proteins with no homologies to any protein deposited in accessible databases. Sixteen of these proteins appear to be unique to sand flies. With this approach, we have tripled the number of isolated secretory proteins from this sand fly. Because of the relationship between the vertebrate host immune response to salivary proteins and protection to parasite infection, these proteins are promising markers for vector exposure and attractive targets for vaccine development to control Leishmania chagasi infection.
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- 2004
34. Exploring the sialome of the blood-sucking bug Rhodnius prolixus
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Mário A.C. Silva-Neto, Van My Pham, John F. Andersen, José M. C. Ribeiro, Mark Garfield, and Jesus G. Valenzuela
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Hemeproteins ,Transcription, Genetic ,media_common.quotation_subject ,Rhodnius ,Molecular Sequence Data ,Insect ,Biology ,Biochemistry ,Salivary Glands ,Nitrophorin ,medicine ,Animals ,Cluster Analysis ,Amino Acid Sequence ,Salivary Proteins and Peptides ,Rhodnius prolixus ,Databases, Protein ,Molecular Biology ,Phylogeny ,media_common ,Gene Library ,Salivary gland ,Sequence Homology, Amino Acid ,cDNA library ,biology.organism_classification ,Molecular biology ,medicine.anatomical_structure ,Insect Science ,Sialome ,Proteome ,Insect Proteins ,Carrier Proteins ,Sequence Alignment - Abstract
Rhodnius prolixus is a Hemiptera that feeds exclusively on vertebrate blood in all life stages. Its salivary glands produce potent pharmacological substances that counteract host hemostasis, including anti-clotting, anti-platelet, and vasodilatory substances. To obtain a further insight into the salivary biochemical and pharmacological complexity of this insect, a cDNA library was randomly sequenced, and salivary gland homogenates were fractionated by HPLC to obtain aminoterminal sequences of abundantly expressed proteins. Results indicate a remarkable expansion of the lipocalin family in Rhodnius salivary glands, among other protein sequences described. A summary of 31 new full length proteins deducted from their mRNA sequence is described, including several new members of the nitrophorin, triabin, and pallidipin families. The electronic version of the complete tables is available at http://www.ncbi.nlm.nih.gov/projects/vectors/rhodnius_prolixus.
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- 2004
35. An insight into the salivary transcriptome and proteome of the adult female mosquito Culex pipiens quinquefasciatus
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Van My Pham, Jesus G. Valenzuela, Rosane Charlab, José M. C. Ribeiro, and Mark Garfield
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DNA, Complementary ,Proteome ,Transcription, Genetic ,Sequence analysis ,Hematophagy ,Molecular Sequence Data ,Biochemistry ,Salivary Glands ,Transcriptome ,Sequence Analysis, Protein ,Databases, Genetic ,medicine ,Animals ,Cluster Analysis ,Amino Acid Sequence ,Salivary Proteins and Peptides ,Molecular Biology ,Gene Library ,Genetics ,biology ,Salivary gland ,cDNA library ,fungi ,Feeding Behavior ,biology.organism_classification ,Culex quinquefasciatus ,Culex ,medicine.anatomical_structure ,Insect Science ,Sialome ,Insect Proteins ,Female ,Dietary Proteins ,Sequence Alignment - Abstract
To obtain an insight into the salivary transcriptome and proteome (sialome) of the adult female mosquito Culex quinquefasciatus, a cDNA library was randomly sequenced, and aminoterminal information for selected proteins and peptides was obtained. cDNA sequence clusters coding for secreted proteins were further analyzed. The transcriptome revealed messages coding for several proteins of known families previously reported in the salivary glands of other blood-feeding insects as well as immune-related products such as C-type lectin, gambicin, and members of the prophenol oxidase cascade. Additionally, several transcripts coding for low-complexity proteins were found, some clearly coding for mucins. Many novel transcripts were found, including a novel endonuclease previously described in crabs and shrimps but not in insects; a hyaluronidase, not described before in mosquito salivary glands but found in venom glands and in salivary glands of sand flies and black flies; several cysteine-rich peptides with possible anticlotting function, including one similar to a previously described nematode family of anti-proteases; and a completely novel family of cysteine- and tryptophane-rich proteins (CWRC family) for which 12 full-length sequences are described. Also described are 14 additional novel proteins and peptides whose function and/or family affiliation are unknown. In total, 54 transcripts coding for full-length proteins are described. That several of these are translated into proteins was confirmed by finding the corresponding aminoterminal sequences in the SDS-PAGE/Edman degradation experiments. Electronic versions of all tables and sequences can be found at http://www.ncbi.nlm.nih.gov/projects/Mosquito/C_quinquefasciatus_sialome.
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- 2003
36. Exploring the salivary gland transcriptome and proteome of the Anopheles stephensi mosquito
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Mark Garfield, José M. C. Ribeiro, Van My Pham, Ivo M.B. Francischetti, and Jesus G. Valenzuela
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Protein family ,Proteome ,Transcription, Genetic ,Anopheles gambiae ,Molecular Sequence Data ,Biology ,Biochemistry ,Salivary Glands ,Complementary DNA ,parasitic diseases ,Anopheles ,Dietary Carbohydrates ,Animals ,Amino Acid Sequence ,Molecular Biology ,Anopheles stephensi ,Gene Library ,Genetics ,Genome ,cDNA library ,Feeding Behavior ,biology.organism_classification ,Malaria ,Molecular Weight ,Gene Expression Regulation ,Insect Science ,Sialome ,Insect Proteins ,Female ,Dietary Proteins - Abstract
Anopheles stephensi is the main urban mosquito vector of malaria in the Indian subcontinent, and belongs to the same subgenus as Anopheles gambiae, the main malaria vector in Africa. Recently the genome and proteome sets of An. gambiae have been described, as well as several protein sequences expressed in its salivary glands, some of which had their expression confirmed by amino terminal sequencing. In this paper, we randomly sequenced a full-length cDNA library of An. stephensi and performed Edman degradation of polyvinylidene difluoride (PVDF)-transferred protein bands from salivary homogenates. Twelve of 13 proteins found by aminoterminal degradation were found among the cDNA clusters of the library. Thirty-three full-length novel cDNA sequences are reported, including a novel secreted galectin; the homologue of anophelin, a thrombin inhibitor; a novel trypsin/chymotrypsin inhibitor; an apyrase; a lipase; and several new members of the D7 protein family. Most of the novel proteins have no known function. Comparison of the putatively secreted and putatively housekeeping proteins of An. stephensi with An. gambiae proteins indicated that the salivary gland proteins are at a faster evolutionary pace. The possible role of these proteins in blood and sugar feeding by the mosquito is discussed. The electronic tables and supplemental material are available at http://www.ncbi.nlm.nih.gov/projects/Mosquito/A_stephensi_sialome/ .
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- 2003
37. High degree of conservancy among secreted salivary gland proteins from two geographically distant Phlebotomus duboscqi sandflies populations (Mali and Kenya)
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Jesus G. Valenzuela, Constance Souko Sangare, Lucie Sigutova, Van My Pham, Jennifer M. Anderson, Mark Garfield, Sibiry Samake, Shaden Kamhawi, Fabiano Oliveira, Hirotomo Kato, Ibrahim Sissoko, Seydou Doumbia, Phillip G. Lawyer, and Petr Volf
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Proteomics ,Saliva ,DNA, Complementary ,lcsh:QH426-470 ,lcsh:Biotechnology ,030231 tropical medicine ,Molecular Sequence Data ,Mali ,03 medical and health sciences ,0302 clinical medicine ,Phylogenetics ,lcsh:TP248.13-248.65 ,parasitic diseases ,Genetics ,medicine ,Animals ,Phlebotomus ,Amino Acid Sequence ,Salivary Proteins and Peptides ,Phylogeny ,030304 developmental biology ,Gene Library ,0303 health sciences ,biology ,Phylogenetic tree ,Salivary gland ,Geography ,Sequence Analysis, DNA ,Africa, Eastern ,biology.organism_classification ,Leishmania ,Molecular biology ,Kenya ,Sandfly ,lcsh:Genetics ,Africa, Western ,medicine.anatomical_structure ,Proteome ,Insect Proteins ,Sequence Alignment ,Biotechnology ,Research Article - Abstract
BackgroundSalivary proteins from sandflies are potential targets for exploitation as vaccines to controlLeishmaniainfection; in this work we tested the hypothesis that salivary proteins from geographically distantPhlebotomus duboscqisandfly populations are highly divergent due to the pressure exerted by the host immune response. Salivary gland cDNA libraries were prepared from wild-caughtP. duboscqifrom Mali and recently colonised flies of the same species from Kenya.ResultsTranscriptome and proteome analysis resulted in the identification of the most abundant salivary gland-secreted proteins. Orthologues of these salivary proteins were identified by phylogenetic tree analysis. Moreover, comparative analysis between the orthologues of these two different populations resulted in a high level of protein identity, including the predicted MHC class II T-cell epitopes from all these salivary proteins.ConclusionThese data refute the hypothesis that salivary proteins from geographically distinct populations of the same Phlebotomus sandfly species are highly divergent. They also suggest the potential for using the same species-specific components in a potential vector saliva-based vaccine.
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- 2006
38. Toward a catalog for the transcripts and proteins (sialome) from the salivary gland of the malaria vector Anopheles gambiae.
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Francischetti, Ivo M.B., Valenzuela, Jesus G., Van My Pham, Garfield, Mark K., and Ribeiro, José M.C.
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ANOPHELES gambiae ,DNA ,GENETIC code - Abstract
Hundreds of Anopheles gambiae salivary gland cDNA library clones have been sequenced. A cluster analysis based on sequence similarity at e[sup -60] grouped the 691 sequences into 251 different clusters that code for proteins with putative secretory, housekeeping, or unknown functions. Among the housekeeping cDNAs, we found sequences predicted to code for novel thioredoxin, tetraspanin, hemopexin, heat shock protein, and TRIO and MBF proteins. Among secreted cDNAs, we found 21 novel A. gambiae salivary sequences including those predicted to encode amylase, caireticulin, selenoprotein, mucin-like protein and 30-kDa allergen, in addition to antigen 5- and D7-related proteins, three novel salivary gland (SG)-like proteins and eight unique putative secreted proteins (Hypothetical Proteins, HP). The electronic version of this paper contains hyperlinks to FASTA-formatted files for each cluster with the best match to the nonredundant (NR) and conserved domain databases (CDI)) in addition to CLUSTAL alignments of each cluster. The N terminus of 12 proteins (SG-1, SG-1-like 2, SG-6, HP 8, HP 9-like, 5′ nucleotidase, 30-kDa protein, antigen 5- and four D7-related proteins) has been identified by Edman degradation of PVDF-transferred, SDS/PAGE-separated salivary gland proteins. Therefore, we contribute to the generation of a catalog of A. gambiae salivary transcripts and proteins. These data are freely available and will eventually become an invaluable tool to study the role of salivary molecules in parasite-host/vector interactions. [ABSTRACT FROM AUTHOR]
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- 2002
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39. An insight into the sialotranscriptome of the West Nile mosquito vector, Culex tarsalis
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Irma Sanchez-Vargas, Kent D. Barbian, Amanda J. Favreau, Ken E. Olson, Van My Pham, Eric Calvo, and José M. C. Ribeiro
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Saliva ,Protein family ,lcsh:QH426-470 ,Sequence analysis ,Culex ,lcsh:Biotechnology ,Molecular Sequence Data ,030231 tropical medicine ,Genes, Insect ,Biology ,Salivary Glands ,Evolution, Molecular ,03 medical and health sciences ,0302 clinical medicine ,Complementary DNA ,lcsh:TP248.13-248.65 ,parasitic diseases ,Genetics ,Animals ,Genomic library ,Amino Acid Sequence ,Salivary Proteins and Peptides ,Gene Library ,030304 developmental biology ,Expressed Sequence Tags ,0303 health sciences ,Gene Expression Profiling ,fungi ,Computational Biology ,Sequence Analysis, DNA ,biology.organism_classification ,3. Good health ,lcsh:Genetics ,Vector (epidemiology) ,Odorant-binding protein ,biology.protein ,Female ,Sequence Alignment ,Research Article ,Biotechnology - Abstract
Background Saliva of adult female mosquitoes help sugar and blood feeding by providing enzymes and polypeptides that help sugar digestion, control microbial growth and counteract their vertebrate host hemostasis and inflammation. Mosquito saliva also potentiates the transmission of vector borne pathogens, including arboviruses. Culex tarsalis is a bird feeding mosquito vector of West Nile Virus closely related to C. quinquefasciatus, a mosquito relatively recently adapted to feed on humans, and the only mosquito of the genus Culex to have its sialotranscriptome so far described. Results A total of 1,753 clones randomly selected from an adult female C. tarsalis salivary glands (SG) cDNA library were sequenced and used to assemble a database that yielded 809 clusters of related sequences, 675 of which were singletons. Primer extension experiments were performed in selected clones to further extend sequence coverage, allowing for the identification of 283 protein sequences, 80 of which code for putative secreted proteins. Conclusion Comparison of the C. tarsalis sialotranscriptome with that of C. quinquefasciatus reveals accelerated evolution of salivary proteins as compared to housekeeping proteins. The average amino acid identity among salivary proteins is 70.1%, while that for housekeeping proteins is 91.2% (P < 0.05), and the codon volatility of secreted proteins is significantly higher than those of housekeeping proteins. Several protein families previously found exclusive of mosquitoes, including only in the Aedes genus have been identified in C. tarsalis. Interestingly, a protein family so far unique to C. quinquefasciatus, with 30 genes, is also found in C. tarsalis, indicating it was not a specific C. quinquefasciatus acquisition in its evolution to optimize mammal blood feeding.
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