25 results on '"Van Der Kelen K"'
Search Results
2. Zeatin modulates flower bud development and tocopherol levels inCistus albidus(L.) plants as they age
- Author
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Hernández, I., primary, Miret, J. A., additional, Van Der Kelen, K., additional, Rombaut, D., additional, Van Breusegem, F., additional, and Munné-Bosch, S., additional
- Published
- 2014
- Full Text
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3. Auditory cortex stimulation for tinnitus.
- Author
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Steiger, H. -J., Sakas, Damianos E., Simpson, Brian A., De Ridder, Dirk, De Mulder, G., Verstraeten, E., Seidman, M., Elisevich, K., Sunaert, S., Kovacs, S., Van der Kelen, K., Van de Heyning, P., and Moller, A.
- Abstract
Functional imaging techniques have demonstrated a relationship between the intensity of tinnitus and the degree of reorganization of the primary auditory cortex. Studies in experimental animals and humans have revealed that tinnitus is associated with a synchronized hyperactivity in the auditory cortex and proposed that the underlying pathophysiological mechanism is thalamocortical dysrhythmia; hence, decreased auditory stimulation results in decreased firing rate, and decreased lateral inhibition. Consequently, the surrounding brain area becomes hyperactive, firing at gamma band rates; this is considered a necessary precondition of auditory consciousness, and also tinnitus. Synchronization of the gamma band activity could possibly induce a topographical reorganization based on Hebbian mechanisms. Therefore, it seems logical to try to suppress tinnitus by modifying the tinnitus-related auditory cortex reorganization and hyperactivity. This can be achieved using neuronavigation- guided transcranial magnetic stimulation (TMS), which is capable of modulating cortical activity. If TMS is capable of suppressing tinnitus, the effect should be maintained by implanting electrodes over the area of electrophysiological signal abnormality on the auditory cortex. The results in the first patients treated by auditory cortex stimulation demonstrate a statistically significant tinnitus suppression in cases of unilateral pure tone tinnitus without suppression of white or narrow band noise. Hence, auditory cortex stimulation could become a physiologically guided treatment for a selected category of patients with severe tinnitus. [ABSTRACT FROM AUTHOR]
- Published
- 2007
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4. Zeatin modulates flower bud development and tocopherol levels in Cistus albidus (L.) plants as they age.
- Author
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Hernández, I., Miret, J. A., Van Der Kelen, K., Rombaut, D., Van Breusegem, F., Munné‐Bosch, S., and Hause, B.
- Subjects
ZEATIN ,BUDS ,VITAMIN E ,SENSITIVITY analysis ,PLANT growth - Abstract
In a previous study we showed that Cistus albidus (L.) experiences an age-dependent decay in flower vigour correlated with a decline in trans-zeatin (t Z) levels. In the present study we aimed to establish a causal relationship between these two phenomena. Exogenous t Z applied to plants grown under semi-controlled conditions did not rescue flower vigour; however, it accelerated flower development, but only in younger individuals. Older plants showed lower tocopherol levels in flower buds, which were restored by exogenous t Z, suggesting that a loss of antioxidant defences may underlie the age-dependent decay in flower vigour. We conclude that declining t Z levels may not be directly responsible for the age-associated loss of floral vigour; that t Z modulates the speed of flower development as plants age; and that flower buds alter their sensitivity to t Z as plants age. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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5. Mutation of Arabidopsis SME1 and Sm core assembly improves oxidative stress resilience.
- Author
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Willems P, Van Ruyskensvelde V, Maruta T, Pottie R, Fernández-Fernández ÁD, Pauwels J, Hannah MA, Gevaert K, Van Breusegem F, and Van der Kelen K
- Subjects
- Animals, RNA Precursors genetics, RNA Precursors metabolism, Hydrogen Peroxide pharmacology, Hydrogen Peroxide metabolism, Paraquat, Proteomics, Alternative Splicing, Mutation, RNA, Messenger metabolism, Oxidative Stress, Gene Expression Regulation, Plant, Mammals metabolism, Arabidopsis genetics, Arabidopsis metabolism, Arabidopsis Proteins genetics, Arabidopsis Proteins metabolism
- Abstract
Alternative splicing is a key posttranscriptional gene regulatory process, acting in diverse adaptive and basal plant processes. Splicing of precursor-messenger RNA (pre-mRNA) is catalyzed by a dynamic ribonucleoprotein complex, designated the spliceosome. In a suppressor screen, we identified a nonsense mutation in the Smith (Sm) antigen protein SME1 to alleviate photorespiratory H
2 O2 -dependent cell death in catalase deficient plants. Similar attenuation of cell death was observed upon chemical inhibition of the spliceosome, suggesting pre-mRNA splicing inhibition to be responsible for the observed cell death alleviation. Furthermore, the sme1-2 mutants showed increased tolerance to the reactive oxygen species inducing herbicide methyl viologen. Both an mRNA-seq and shotgun proteomic analysis in sme1-2 mutants displayed a constitutive molecular stress response, together with extensive alterations in pre-mRNA splicing of transcripts encoding metabolic enzymes and RNA binding proteins, even under unstressed conditions. Using SME1 as a bait to identify protein interactors, we provide experimental evidence for almost 50 homologs of the mammalian spliceosome-associated protein to reside in the Arabidopsis thaliana spliceosome complexes and propose roles in pre-mRNA splicing for four uncharacterized plant proteins. Furthermore, as for sme1-2, a mutant in the Sm core assembly protein ICLN resulted in a decreased sensitivity to methyl viologen. Taken together, these data show that both a perturbed Sm core composition and assembly results in the activation of a defense response and in enhanced resilience to oxidative stress., Competing Interests: Declaration of competing interest The authors declare that they have no conflict of interest., (Copyright © 2023 Elsevier Inc. All rights reserved.)- Published
- 2023
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6. The Arabidopsis mediator complex subunit 8 regulates oxidative stress responses.
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He H, Denecker J, Van Der Kelen K, Willems P, Pottie R, Phua SY, Hannah MA, Vertommen D, Van Breusegem F, and Mhamdi A
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- Amitrole pharmacology, Arabidopsis drug effects, Arabidopsis Proteins genetics, Gene Expression Regulation, Plant drug effects, Hydrogen Peroxide metabolism, Mediator Complex genetics, MicroRNAs, Oxidative Stress drug effects, Paraquat pharmacology, Plants, Genetically Modified, Protein Domains, Reactive Oxygen Species metabolism, Salicylic Acid metabolism, Transcription Factors, General genetics, Transcription Factors, General metabolism, Arabidopsis physiology, Arabidopsis Proteins metabolism, Herbicides pharmacology, Mediator Complex metabolism, Oxidative Stress physiology
- Abstract
Signaling events triggered by hydrogen peroxide (H2O2) regulate plant growth and defense by orchestrating a genome-wide transcriptional reprogramming. However, the specific mechanisms that govern H2O2-dependent gene expression are still poorly understood. Here, we identify the Arabidopsis Mediator complex subunit MED8 as a regulator of H2O2 responses. The introduction of the med8 mutation in a constitutive oxidative stress genetic background (catalase-deficient, cat2) was associated with enhanced activation of the salicylic acid pathway and accelerated cell death. Interestingly, med8 seedlings were more tolerant to oxidative stress generated by the herbicide methyl viologen (MV) and exhibited transcriptional hyperactivation of defense signaling, in particular salicylic acid- and jasmonic acid-related pathways. The med8-triggered tolerance to MV was manipulated by the introduction of secondary mutations in salicylic acid and jasmonic acid pathways. In addition, analysis of the Mediator interactome revealed interactions with components involved in mRNA processing and microRNA biogenesis, hence expanding the role of Mediator beyond transcription. Notably, MED8 interacted with the transcriptional regulator NEGATIVE ON TATA-LESS, NOT2, to control the expression of H2O2-inducible genes and stress responses. Our work establishes MED8 as a component regulating oxidative stress responses and demonstrates that it acts as a negative regulator of H2O2-driven activation of defense gene expression., (© American Society of Plant Biologists 2021. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
- Published
- 2021
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7. Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors.
- Author
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Shapiguzov A, Vainonen JP, Hunter K, Tossavainen H, Tiwari A, Järvi S, Hellman M, Aarabi F, Alseekh S, Wybouw B, Van Der Kelen K, Nikkanen L, Krasensky-Wrzaczek J, Sipari N, Keinänen M, Tyystjärvi E, Rintamäki E, De Rybel B, Salojärvi J, Van Breusegem F, Fernie AR, Brosché M, Permi P, Aro EM, Wrzaczek M, and Kangasjärvi J
- Subjects
- Chloroplasts genetics, Electron Transport Complex III genetics, Gene Expression Regulation, Plant genetics, Mitochondria genetics, Plants, Genetically Modified genetics, Reactive Oxygen Species metabolism, Signal Transduction genetics, Stress, Physiological genetics, Arabidopsis genetics, Arabidopsis Proteins genetics, Nuclear Proteins genetics, Transcription Factors genetics
- Abstract
Reactive oxygen species (ROS)-dependent signaling pathways from chloroplasts and mitochondria merge at the nuclear protein RADICAL-INDUCED CELL DEATH1 (RCD1). RCD1 interacts in vivo and suppresses the activity of the transcription factors ANAC013 and ANAC017, which mediate a ROS-related retrograde signal originating from mitochondrial complex III. Inactivation of RCD1 leads to increased expression of mitochondrial dysfunction stimulon (MDS) genes regulated by ANAC013 and ANAC017. Accumulating MDS gene products, including alternative oxidases (AOXs), affect redox status of the chloroplasts, leading to changes in chloroplast ROS processing and increased protection of photosynthetic apparatus. ROS alter the abundance, thiol redox state and oligomerization of the RCD1 protein in vivo, providing feedback control on its function. RCD1-dependent regulation is linked to chloroplast signaling by 3'-phosphoadenosine 5'-phosphate (PAP). Thus, RCD1 integrates organellar signaling from chloroplasts and mitochondria to establish transcriptional control over the metabolic processes in both organelles., Competing Interests: AS, JV, KH, HT, AT, SJ, MH, FA, SA, BW, KV, LN, JK, NS, MK, ET, ER, BD, JS, FV, AF, MB, PP, EA, MW, JK No competing interests declared, (© 2019, Shapiguzov et al.)
- Published
- 2019
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8. Post-transcriptional regulation of the oxidative stress response in plants.
- Author
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Van Ruyskensvelde V, Van Breusegem F, and Van Der Kelen K
- Subjects
- Gene Expression Regulation, Plant, Hydrogen Peroxide metabolism, Oxidation-Reduction, Plants genetics, Plants metabolism, Antioxidants metabolism, Oxidative Stress genetics, Proteome genetics, Reactive Oxygen Species metabolism
- Abstract
Due to their sessile lifestyle, plants can be exposed to several kinds of stresses that will increase the production of reactive oxygen species (ROS), such as hydrogen peroxide, singlet oxygen, and hydroxyl radicals, in the plant cells and activate several signaling pathways that cause alterations in the cellular metabolism. Nevertheless, when ROS production outreaches a certain level, oxidative damage to nucleic acids, lipids, metabolites, and proteins will occur, finally leading to cell death. Until now, the most comprehensive and detailed readout of oxidative stress responses is undoubtedly obtained at the transcriptome level. However, transcript levels often do not correlate with the corresponding protein levels. Indeed, together with transcriptional regulations, post-transcriptional, translational, and/or post-translational regulations will shape the active proteome. Here, we review the current knowledge on the post-transcriptional gene regulation during the oxidative stress responses in planta., (Copyright © 2018 Elsevier Inc. All rights reserved.)
- Published
- 2018
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9. The dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator.
- Author
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Czarnocka W, Van Der Kelen K, Willems P, Szechyńska-Hebda M, Shahnejat-Bushehri S, Balazadeh S, Rusaczonek A, Mueller-Roeber B, Van Breusegem F, and Karpiński S
- Subjects
- Arabidopsis cytology, Arabidopsis growth & development, Carboxylic Ester Hydrolases metabolism, Cell Count, Cell Nucleus metabolism, Gene Expression Regulation, Plant, Oxidation-Reduction, Oxidative Stress, Promoter Regions, Genetic genetics, Protein Binding, Protein Interaction Maps, Protein Multimerization, Arabidopsis genetics, Arabidopsis Proteins metabolism, DNA-Binding Proteins metabolism, Transcription Factors metabolism, Transcription, Genetic
- Abstract
Since its discovery over two decades ago as an important cell death regulator in Arabidopsis thaliana, the role of LESION SIMULATING DISEASE 1 (LSD1) has been studied intensively within both biotic and abiotic stress responses as well as with respect to plant fitness regulation. However, its molecular mode of action remains enigmatic. Here, we demonstrate that nucleo-cytoplasmic LSD1 interacts with a broad range of other proteins that are engaged in various molecular pathways such as ubiquitination, methylation, cell cycle control, gametogenesis, embryo development and cell wall formation. The interaction of LSD1 with these partners is dependent on redox status, as oxidative stress significantly changes the quantity and types of LSD1-formed complexes. Furthermore, we show that LSD1 regulates the number and size of leaf mesophyll cells and affects plant vegetative growth. Importantly, we also reveal that in addition to its function as a scaffold protein, LSD1 acts as a transcriptional regulator. Taken together, our results demonstrate that LSD1 plays a dual role within the cell by acting as a condition-dependent scaffold protein and as a transcription regulator., (© 2017 The Authors Plant, Cell & Environment Published by John Wiley & Sons Ltd.)
- Published
- 2017
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10. SHORT-ROOT Deficiency Alleviates the Cell Death Phenotype of the Arabidopsis catalase2 Mutant under Photorespiration-Promoting Conditions.
- Author
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Waszczak C, Kerchev PI, Mühlenbock P, Hoeberichts FA, Van Der Kelen K, Mhamdi A, Willems P, Denecker J, Kumpf RP, Noctor G, Messens J, and Van Breusegem F
- Subjects
- Arabidopsis cytology, Arabidopsis genetics, Arabidopsis Proteins genetics, Catalase genetics, Cell Death genetics, Cell Death physiology, Gene Expression Regulation, Plant genetics, Gene Expression Regulation, Plant physiology, Hydrogen Peroxide metabolism, Oxidation-Reduction, Plants, Genetically Modified cytology, Plants, Genetically Modified genetics, Plants, Genetically Modified metabolism, Signal Transduction genetics, Signal Transduction physiology, Transcription Factors genetics, Arabidopsis metabolism, Arabidopsis Proteins metabolism, Catalase metabolism, Transcription Factors deficiency, Transcription Factors metabolism
- Abstract
Hydrogen peroxide (H2O2) can act as a signaling molecule that influences various aspects of plant growth and development, including stress signaling and cell death. To analyze molecular mechanisms that regulate the response to increased H2O2 levels in plant cells, we focused on the photorespiration-dependent peroxisomal H2O2 production in Arabidopsis thaliana mutants lacking CATALASE2 (CAT2) activity (cat2-2). By screening for second-site mutations that attenuate the PSII maximum efficiency (Fv'/Fm') decrease and lesion formation linked to the cat2-2 phenotype, we discovered that a mutation in SHORT-ROOT (SHR) rescued the cell death phenotype of cat2-2 plants under photorespiration-promoting conditions. SHR deficiency attenuated H2O2-dependent gene expression, oxidation of the glutathione pool, and ascorbate depletion in a cat2-2 genetic background upon exposure to photorespiratory stress. Decreased glycolate oxidase and catalase activities together with accumulation of glycolate further implied that SHR deficiency impacts the cellular redox homeostasis by limiting peroxisomal H2O2 production. The photorespiratory phenotype of cat2-2 mutants did not depend on the SHR functional interactor SCARECROW and the sugar signaling component ABSCISIC ACID INSENSITIVE4, despite the requirement for exogenous sucrose for cell death attenuation in cat2-2 shr-6 double mutants. Our findings reveal a link between SHR and photorespiratory H2O2 production that has implications for the integration of developmental and stress responses., (© 2016 American Society of Plant Biologists. All rights reserved.)
- Published
- 2016
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11. Lack of GLYCOLATE OXIDASE1, but Not GLYCOLATE OXIDASE2, Attenuates the Photorespiratory Phenotype of CATALASE2-Deficient Arabidopsis.
- Author
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Kerchev P, Waszczak C, Lewandowska A, Willems P, Shapiguzov A, Li Z, Alseekh S, Mühlenbock P, Hoeberichts FA, Huang J, Van Der Kelen K, Kangasjärvi J, Fernie AR, De Smet R, Van de Peer Y, Messens J, and Van Breusegem F
- Subjects
- Alcohol Oxidoreductases genetics, Arabidopsis genetics, Arabidopsis Proteins genetics, Cell Respiration, Evolution, Molecular, Glycolates metabolism, Light, Metabolome genetics, Mutation, Oxidation-Reduction, Phenotype, Photosynthesis, Alcohol Oxidoreductases metabolism, Arabidopsis physiology, Arabidopsis Proteins metabolism
- Abstract
The genes coding for the core metabolic enzymes of the photorespiratory pathway that allows plants with C3-type photosynthesis to survive in an oxygen-rich atmosphere, have been largely discovered in genetic screens aimed to isolate mutants that are unviable under ambient air. As an exception, glycolate oxidase (GOX) mutants with a photorespiratory phenotype have not been described yet in C3 species. Using Arabidopsis (Arabidopsis thaliana) mutants lacking the peroxisomal CATALASE2 (cat2-2) that display stunted growth and cell death lesions under ambient air, we isolated a second-site loss-of-function mutation in GLYCOLATE OXIDASE1 (GOX1) that attenuated the photorespiratory phenotype of cat2-2 Interestingly, knocking out the nearly identical GOX2 in the cat2-2 background did not affect the photorespiratory phenotype, indicating that GOX1 and GOX2 play distinct metabolic roles. We further investigated their individual functions in single gox1-1 and gox2-1 mutants and revealed that their phenotypes can be modulated by environmental conditions that increase the metabolic flux through the photorespiratory pathway. High light negatively affected the photosynthetic performance and growth of both gox1-1 and gox2-1 mutants, but the negative consequences of severe photorespiration were more pronounced in the absence of GOX1, which was accompanied with lesser ability to process glycolate. Taken together, our results point toward divergent functions of the two photorespiratory GOX isoforms in Arabidopsis and contribute to a better understanding of the photorespiratory pathway., (© 2016 American Society of Plant Biologists. All Rights Reserved.)
- Published
- 2016
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12. Kresoxim-methyl primes Medicago truncatula plants against abiotic stress factors via altered reactive oxygen and nitrogen species signalling leading to downstream transcriptional and metabolic readjustment.
- Author
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Filippou P, Antoniou C, Obata T, Van Der Kelen K, Harokopos V, Kanetis L, Aidinis V, Van Breusegem F, Fernie AR, and Fotopoulos V
- Subjects
- Amino Acids metabolism, Droughts, Gene Expression Regulation, Plant drug effects, Hydrogen Peroxide metabolism, Malondialdehyde metabolism, Medicago truncatula drug effects, Metabolic Networks and Pathways drug effects, Metabolic Networks and Pathways genetics, Metabolome drug effects, Metabolome genetics, Methacrylates pharmacology, Nitrate Reductase metabolism, Nitric Oxide biosynthesis, Oxidative Stress drug effects, Plant Proteins genetics, Plant Proteins metabolism, Plant Stomata drug effects, Plant Stomata physiology, Proline metabolism, Proteolysis drug effects, Salinity, Signal Transduction drug effects, Sodium Chloride pharmacology, Strobilurins, Medicago truncatula genetics, Medicago truncatula metabolism, Phenylacetates pharmacology, Reactive Nitrogen Species metabolism, Reactive Oxygen Species metabolism, Stress, Physiological drug effects, Transcription, Genetic drug effects
- Abstract
Biotic and abiotic stresses, such as fungal infection and drought, cause major yield losses in modern agriculture. Kresoxim-methyl (KM) belongs to the strobilurins, one of the most important classes of agricultural fungicides displaying a direct effect on several plant physiological and developmental processes. However, the impact of KM treatment on salt and drought stress tolerance is unknown. In this study we demonstrate that KM pre-treatment of Medicago truncatula plants results in increased protection to drought and salt stress. Foliar application with KM prior to stress imposition resulted in improvement of physiological parameters compared with stressed-only plants. This protective effect was further supported by increased proline biosynthesis, modified reactive oxygen and nitrogen species signalling, and attenuation of cellular damage. In addition, comprehensive transcriptome analysis identified a number of transcripts that are differentially accumulating in drought- and salinity-stressed plants (646 and 57, respectively) after KM pre-treatment compared with stressed plants with no KM pre-treatment. Metabolomic analysis suggests that the priming role of KM in drought- and to a lesser extent in salinity-stressed plants can be attributed to the regulation of key metabolites (including sugars and amino acids) resulting in protection against abiotic stress factors. Overall, the present study highlights the potential use of this commonly used fungicide as a priming agent against key abiotic stress conditions., (© The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.)
- Published
- 2016
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13. Activation of auxin signalling counteracts photorespiratory H2O2-dependent cell death.
- Author
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Kerchev P, Mühlenbock P, Denecker J, Morreel K, Hoeberichts FA, Van Der Kelen K, Vandorpe M, Nguyen L, Audenaert D, and Van Breusegem F
- Subjects
- 2,4-Dichlorophenoxyacetic Acid analogs & derivatives, 2,4-Dichlorophenoxyacetic Acid chemistry, 2,4-Dichlorophenoxyacetic Acid metabolism, Amides metabolism, Amino Acids metabolism, Arabidopsis drug effects, Arabidopsis radiation effects, Catalase metabolism, Cell Death drug effects, Cell Death radiation effects, Cell Respiration drug effects, Cell Respiration radiation effects, Mutation genetics, Small Molecule Libraries pharmacology, Arabidopsis cytology, Arabidopsis metabolism, Hydrogen Peroxide pharmacology, Indoleacetic Acids metabolism, Light, Signal Transduction drug effects
- Abstract
The high metabolic flux through photorespiration constitutes a significant part of the carbon cycle. Although the major enzymatic steps of the photorespiratory pathway are well characterized, little information is available on the functional significance of photorespiration beyond carbon recycling. Particularly important in this respect is the peroxisomal catalase activity which removes photorespiratory H2O2 generated during the oxidation of glycolate to glyoxylate, thus maintaining the cellular redox homeostasis governing the perception, integration and execution of stress responses. By performing a chemical screen, we identified 34 small molecules that alleviate the negative effects of photorespiration in Arabidopsis thaliana mutants lacking photorespiratory catalase (cat2). The chlorophyll fluorescence parameter photosystem II maximum efficiency (Fv′/Fm′) was used as a high-throughput readout. The most potent chemical that could rescue the photorespiratory phenotype of cat2 is a pro-auxin that contains a synthetic auxin-like substructure belonging to the phenoxy herbicide family, which can be released in planta. The naturally occurring indole-3-acetic acid (IAA) and other chemically distinct synthetic auxins also inhibited the photorespiratory-dependent cell death in cat2 mutants, implying a role for auxin signalling in stress tolerance.
- Published
- 2015
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14. Plant innate immunity--sunny side up?
- Author
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Stael S, Kmiecik P, Willems P, Van Der Kelen K, Coll NS, Teige M, and Van Breusegem F
- Subjects
- Chloroplasts metabolism, Light, Calcium metabolism, Plant Immunity, Reactive Oxygen Species metabolism, Signal Transduction
- Abstract
Reactive oxygen species (ROS)- and calcium- dependent signaling pathways play well-established roles during plant innate immunity. Chloroplasts host major biosynthetic pathways and have central roles in energy production, redox homeostasis, and retrograde signaling. However, the organelle's importance in immunity has been somehow overlooked. Recent findings suggest that the chloroplast also has an unanticipated function as a hub for ROS- and calcium-signaling that affects immunity responses at an early stage after pathogen attack. In this opinion article, we discuss a chloroplastic calcium-ROS signaling branch of plant innate immunity. We propose that this chloroplastic branch acts as a light-dependent rheostat that, through the production of ROS, influences the severity of the immune response., (Copyright © 2014 Elsevier Ltd. All rights reserved.)
- Published
- 2015
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15. Spatial H2O2 signaling specificity: H2O2 from chloroplasts and peroxisomes modulates the plant transcriptome differentially.
- Author
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Sewelam N, Jaspert N, Van Der Kelen K, Tognetti VB, Schmitz J, Frerigmann H, Stahl E, Zeier J, Van Breusegem F, and Maurino VG
- Subjects
- Arabidopsis drug effects, Arabidopsis genetics, Carbon Dioxide pharmacology, Chloroplasts drug effects, Genome, Plant genetics, Kinetics, Metabolomics, Peroxisomes drug effects, Plants, Genetically Modified, Stigmasterol metabolism, Tryptophan metabolism, Arabidopsis cytology, Arabidopsis metabolism, Chloroplasts metabolism, Hydrogen Peroxide metabolism, Peroxisomes metabolism, Transcriptome drug effects
- Abstract
Hydrogen peroxide (H2O2) operates as a signaling molecule in eukaryotes, but the specificity of its signaling capacities remains largely unrevealed. Here, we analyzed whether a moderate production of H2O2 from two different plant cellular compartments has divergent effects on the plant transcriptome. Arabidopsis thaliana overexpressing glycolate oxidase in the chloroplast (Fahnenstich et al., 2008; Balazadeh et al., 2012) and plants deficient in peroxisomal catalase (Queval et al., 2007; Inzé et al., 2012) were grown under non-photorespiratory conditions and then transferred to photorespiratory conditions to foster the production of H2O2 in both organelles. We show that H2O2 originating in a specific organelle induces two types of responses: one that integrates signals independently from the subcellular site of H2O2 production and another that is dependent on the H2O2 production site. H2O2 produced in peroxisomes induces transcripts involved in protein repair responses, while H2O2 produced in chloroplasts induces early signaling responses, including transcription factors and biosynthetic genes involved in production of secondary signaling messengers. There is a significant bias towards the induction of genes involved in responses to wounding and pathogen attack by chloroplastic-produced H2O2, including indolic glucosinolates-, camalexin-, and stigmasterol-biosynthetic genes. These transcriptional responses were accompanied by the accumulation of 4-methoxy-indol-3-ylmethyl glucosinolate and stigmasterol., (© The Author 2014. Published by the Molecular Plant Shanghai Editorial Office in association with Oxford University Press on behalf of CSPB and IPPE, SIBS, CAS.)
- Published
- 2014
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16. Catalase and NO CATALASE ACTIVITY1 promote autophagy-dependent cell death in Arabidopsis.
- Author
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Hackenberg T, Juul T, Auzina A, Gwizdz S, Malolepszy A, Van Der Kelen K, Dam S, Bressendorff S, Lorentzen A, Roepstorff P, Lehmann Nielsen K, Jørgensen JE, Hofius D, Van Breusegem F, Petersen M, and Andersen SU
- Subjects
- Aminopeptidases genetics, Aminopeptidases metabolism, Arabidopsis drug effects, Arabidopsis Proteins genetics, Autophagy drug effects, Autophagy-Related Proteins, Bacterial Proteins genetics, Carrier Proteins genetics, Carrier Proteins metabolism, Catalase genetics, Cell Death drug effects, Cell Death genetics, Hydroxyurea pharmacology, Mutation, Oxidative Stress, Arabidopsis cytology, Arabidopsis physiology, Arabidopsis Proteins metabolism, Autophagy physiology, Catalase metabolism
- Abstract
Programmed cell death often depends on generation of reactive oxygen species, which can be detoxified by antioxidative enzymes, including catalases. We previously isolated catalase-deficient mutants (cat2) in a screen for resistance to hydroxyurea-induced cell death. Here, we identify an Arabidopsis thaliana hydroxyurea-resistant autophagy mutant, atg2, which also shows reduced sensitivity to cell death triggered by the bacterial effector avrRpm1. To test if catalase deficiency likewise affected both hydroxyurea and avrRpm1 sensitivity, we selected mutants with extremely low catalase activities and showed that they carried mutations in a gene that we named NO CATALASE ACTIVITY1 (NCA1). nca1 mutants showed severely reduced activities of all three catalase isoforms in Arabidopsis, and loss of NCA1 function led to strong suppression of RPM1-triggered cell death. Basal and starvation-induced autophagy appeared normal in the nca1 and cat2 mutants. By contrast, autophagic degradation induced by avrRpm1 challenge was compromised, indicating that catalase acted upstream of immunity-triggered autophagy. The direct interaction of catalase with reactive oxygen species could allow catalase to act as a molecular link between reactive oxygen species and the promotion of autophagy-dependent cell death.
- Published
- 2013
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17. Lesion simulating disease1, enhanced disease susceptibility1, and phytoalexin deficient4 conditionally regulate cellular signaling homeostasis, photosynthesis, water use efficiency, and seed yield in Arabidopsis.
- Author
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Wituszynska W, Slesak I, Vanderauwera S, Szechynska-Hebda M, Kornas A, Van Der Kelen K, Mühlenbock P, Karpinska B, Mackowski S, Van Breusegem F, and Karpinski S
- Subjects
- Adaptation, Physiological drug effects, Adaptation, Physiological genetics, Adaptation, Physiological radiation effects, Arabidopsis drug effects, Arabidopsis genetics, Arabidopsis radiation effects, Carboxylic Ester Hydrolases metabolism, Cluster Analysis, DNA-Binding Proteins metabolism, Droughts, Gene Expression Regulation, Plant drug effects, Gene Expression Regulation, Plant radiation effects, Hydrogen Peroxide metabolism, Light, Photosystem II Protein Complex metabolism, Plant Growth Regulators pharmacology, Reactive Oxygen Species metabolism, Salicylic Acid metabolism, Seeds drug effects, Seeds metabolism, Seeds radiation effects, Stress, Physiological drug effects, Stress, Physiological radiation effects, Transcription Factors metabolism, Transcriptome drug effects, Transcriptome genetics, Transcriptome radiation effects, Arabidopsis metabolism, Arabidopsis Proteins metabolism, Homeostasis drug effects, Homeostasis radiation effects, Photosynthesis drug effects, Photosynthesis radiation effects, Seeds growth & development, Signal Transduction drug effects, Signal Transduction radiation effects, Water metabolism
- Abstract
There is growing evidence that for a comprehensive insight into the function of plant genes, it is crucial to assess their functionalities under a wide range of conditions. In this study, we examined the role of lesion simulating disease1 (LSD1), enhanced disease susceptibility1 (EDS1), and phytoalexin deficient4 (PAD4) in the regulation of photosynthesis, water use efficiency, reactive oxygen species/hormonal homeostasis, and seed yield in Arabidopsis (Arabidopsis thaliana) grown in the laboratory and in the field. We demonstrate that the LSD1 null mutant (lsd1), which is known to exhibit a runaway cell death in nonpermissive conditions, proves to be more tolerant to combined drought and high-light stress than the wild type. Moreover, depending on growing conditions, it shows variations in water use efficiency, salicylic acid and hydrogen peroxide concentrations, photosystem II maximum efficiency, and transcription profiles. However, despite these changes, lsd1 demonstrates similar seed yield under all tested conditions. All of these traits depend on EDS1 and PAD4. The differences in the pathways prevailing in the lsd1 in various growing environments are manifested by the significantly smaller number of transcripts deregulated in the field compared with the laboratory, with only 43 commonly regulated genes. Our data indicate that LSD1, EDS1, and PAD4 participate in the regulation of various molecular and physiological processes that influence Arabidopsis fitness. On the basis of these results, we emphasize that the function of such important regulators as LSD1, EDS1, and PAD4 should be studied not only under stable laboratory conditions, but also in the environment abounding in multiple stresses.
- Published
- 2013
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18. Chemical PARP inhibition enhances growth of Arabidopsis and reduces anthocyanin accumulation and the activation of stress protective mechanisms.
- Author
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Schulz P, Neukermans J, Van der Kelen K, Mühlenbock P, Van Breusegem F, Noctor G, Teige M, Metzlaff M, and Hannah MA
- Subjects
- Arabidopsis growth & development, Biosynthetic Pathways physiology, Gene Expression Regulation, Plant drug effects, Metabolome drug effects, Oxidation-Reduction drug effects, Photosynthesis drug effects, Transcription, Genetic drug effects, Anthocyanins metabolism, Arabidopsis drug effects, Arabidopsis metabolism, Enzyme Inhibitors pharmacology, Poly(ADP-ribose) Polymerase Inhibitors, Stress, Physiological
- Abstract
Poly-ADP-ribose polymerase (PARP) post-translationally modifies proteins through the addition of ADP-ribose polymers, yet its role in modulating plant development and stress responses is only poorly understood. The experiments presented here address some of the gaps in our understanding of its role in stress tolerance and thereby provide new insights into tolerance mechanisms and growth. Using a combination of chemical and genetic approaches, this study characterized phenotypes associated with PARP inhibition at the physiological level. Molecular analyses including gene expression analysis, measurement of primary metabolites and redox metabolites were used to understand the underlying processes. The analysis revealed that PARP inhibition represses anthocyanin and ascorbate accumulation under stress conditions. The reduction in defense is correlated with enhanced biomass production. Even in unstressed conditions protective genes and molecules are repressed by PARP inhibition. The reduced anthocyanin production was shown to be based on the repression of transcription of key regulatory and biosynthesis genes. PARP is a key factor for understanding growth and stress responses of plants. PARP inhibition allows plants to reduce protection such as anthocyanin, ascorbate or Non-Photochemical-Quenching whilst maintaining high energy levels likely enabling the observed enhancement of biomass production under stress, opening interesting perspectives for increasing crop productivity.
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- 2012
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19. Energy use efficiency is characterized by an epigenetic component that can be directed through artificial selection to increase yield.
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Hauben M, Haesendonckx B, Standaert E, Van Der Kelen K, Azmi A, Akpo H, Van Breusegem F, Guisez Y, Bots M, Lambert B, Laga B, and De Block M
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- Ascorbic Acid metabolism, Cell Respiration genetics, DNA Methylation, Gene Expression Regulation, Plant, Histones metabolism, Hybrid Vigor, Brassica napus genetics, Brassica napus growth & development, Energy Metabolism genetics, Epigenesis, Genetic, Selection, Genetic
- Abstract
Quantitative traits, such as size and weight in animals and seed yield in plants, are distributed normally, even within a population of genetically identical individuals. For example, in plants, various factors, such as local soil quality, microclimate, and sowing depth, affect growth differences among individual plants of isogenic populations. Besides these physical factors, also epigenetic components contribute to differences in growth and yield. The network that regulates crop yield is still not well understood. Although this network is expected to have epigenetic elements, it is completely unclear whether it would be possible to shape the epigenome to increase crop yield. Here we show that energy use efficiency is an important factor in determining seed yield in canola (Brassica napus) and that it can be selected artificially through an epigenetic feature. From an isogenic canola population of which the individual plants and their self-fertilized progenies were recursively selected for respiration intensity, populations with distinct physiological and agronomical characteristics could be generated. These populations were found to be genetically identical, but epigenetically different. Furthermore, both the DNA methylation patterns as well as the agronomical and physiological characteristics of the selected lines were heritable. Hybrids derived from parent lines selected for high energy use efficiencies had a 5% yield increase on top of heterosis. Our results demonstrate that artificial selection allows the increase of the yield potential by selecting populations with particular epigenomic states.
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- 2009
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20. Translational control of eukaryotic gene expression.
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Van Der Kelen K, Beyaert R, Inzé D, and De Veylder L
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- Animals, Cell Cycle, Genomics, Humans, RNA Caps genetics, Eukaryotic Cells metabolism, Gene Expression Regulation, Protein Biosynthesis
- Abstract
Translational control mechanisms are, besides transcriptional control and mRNA stability, the most determining for final protein levels. A large number of accessory factors that assist the ribosome during initiation, elongation, and termination of translation are required for protein synthesis. Cap-dependent translational control occurs mainly during the initiation step, involving eukaryotic initiation factors (eIFs) and accessory proteins. Initiation is affected by various stimuli that influence the phosphorylation status of both eIF4E and eIF2 and through binding of 4E-binding proteins to eIF4E, which finally inhibits cap- dependent translation. Under conditions where cap-dependent translation is hampered, translation of transcripts containing an internal ribosome entry site can still be supported in a cap-independent manner. An interesting example of translational control is the switch between cap-independent and cap-dependent translation during the eukaryotic cell cycle. At the G1-to-S transition, translation occurs predominantly in a cap-dependent manner, while during the G2-to-M transition, cap-dependent translation is inhibited and transcripts are predominantly translated through a cap-independent mechanism.
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- 2009
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21. Theta, alpha and beta burst transcranial magnetic stimulation: brain modulation in tinnitus.
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De Ridder D, van der Loo E, Van der Kelen K, Menovsky T, van de Heyning P, and Moller A
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- Adult, Aged, Auditory Cortex physiopathology, Female, Humans, Male, Middle Aged, Sex Characteristics, Tinnitus physiopathology, Electroencephalography, Tinnitus therapy, Transcranial Magnetic Stimulation methods
- Abstract
Introduction: Some forms of tinnitus are considered to be auditory phantom phenomena related to reorganization and hyperactivity of the auditory central nervous system. Repetitive transcranial magnetic stimulation (rTMS) is a non-invasive tool capable of modulating human brain activity, using single pulse or burst stimuli. Burst rTMS has only been performed in the theta range, and has not been used clinically. The authors analyze whether burst TMS at theta (5 Hz), alpha (10 Hz) and beta (20 Hz) frequencies can temporarily suppress narrow band noise/white noise tinnitus, which has been demonstrated to be intractable to tonic stimulation., Methods: rTMS is performed both in tonic and burst mode in 46 patients contralateral to the tinnitus side, at 5, 10 and 20 Hz. Fourteen placebo negative rTMS responders are further analyzed., Results: In 5 patients, maximal tinnitus suppression is obtained with theta, in 2 with alpha and in 7 with beta burst stimulation. Burst rTMS suppresses narrow band/white tinnitus much better than tonic rTMS t(13)=6.4, p<.000. Women experience greater suppression of their tinnitus with burst stimulation than men, t(12)=2.9, p<.05. Furthermore left sided tinnitus is perceived as more distressing on the TQ than right sided tinnitus, t(12)=3.2, p<.01. The lower the tinnitus pitch the more effectively rTMS suppresses tinnitus(r=-0.65, p<0.05)., Discussion: Burst rTMS can be used clinically, not only theta burst, but also alpha and beta burst. Burst rTMS is capable of suppressing narrow band/white noise tinnitus very much better than tonic rTMS. This could be due the simple fact that burst neuromodulation is more powerful than tonic neuromodulation or to a differential effect of burst and tonic stimulation on the lemniscal and extralemniscal auditory system. In some patients only alpha or beta burst rTMS is capable of suppressing tinnitus, and theta burst not. Therefore in future rTMS studies it could be worthwhile not to limit burst stimulation to theta burst rTMS.
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- 2007
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22. Do tonic and burst TMS modulate the lemniscal and extralemniscal system differentially?
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De Ridder D, van der Loo E, Van der Kelen K, Menovsky T, van de Heyning P, and Moller A
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- Aged, Female, Humans, Male, Middle Aged, Tinnitus physiopathology, Auditory Cortex physiopathology, Tinnitus therapy, Transcranial Magnetic Stimulation methods
- Abstract
Introduction: Tinnitus is an auditory phantom percept related to tonic and burst hyperactivity of the auditory system. Two parallel pathways supply auditory information to the cerebral cortex: the tonotopically organised lemniscal system, and the non-tonotopic extralemniscal system, firing in tonic mode and burst mode respectively. Transcranial magnetic stimulation (TMS) is a non-invasive method capable of modulating activity of the human cortex, by delivering tonic or burst stimuli. Burst stimulation is shown to be more powerful in activating the cerebral cortex than tonic stimulation and bursts may activate neurons that are not activated by tonic stimulations., Methods: The effect of both tonic and burst TMS in 14 placebo-negative patients presenting narrow band/white noise tinnitus were analysed., Results: Our TMS results show that narrow band/white noise tinnitus is better suppressed with burst TMS in comparison to tonic TMS, t(13)=6.4, p=.000. For pure tone tinnitus no difference is found between burst or tonic TMS, t(13)=.3, ns., Discussion: Based on the hypothesis that white noise is the result of hyperactivity in the non-tonotopic system and pure tone tinnitus of the tonotopic system, we suggest that burst stimulation modulates the extralemniscal system and lemniscal system and tonic stimulation only the lemniscal system.
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- 2007
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23. Primary and secondary auditory cortex stimulation for intractable tinnitus.
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De Ridder D, De Mulder G, Verstraeten E, Van der Kelen K, Sunaert S, Smits M, Kovacs S, Verlooy J, Van de Heyning P, and Moller AR
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- Adult, Auditory Cortex physiology, Electrodes, Implanted, Female, Humans, Magnetic Resonance Imaging, Male, Middle Aged, Tinnitus etiology, Tinnitus physiopathology, Tomography, X-Ray Computed, Transcranial Magnetic Stimulation, Auditory Cortex physiopathology, Electric Stimulation Therapy, Tinnitus therapy
- Abstract
Introduction: Recent research suggests tinnitus is a phantom phenomenon based on hyperactivity of the auditory system, which can be visualized by functional neuroimaging, and transiently modulated by transcranial magnetic stimulation (TMS). We present the results of the first implanted electrodes on the primary and secondary auditory cortex after a successful TMS suppression., Methods and Materials: Twelve patients underwent an auditory cortex implantation, 10 for unilateral and 2 for bilateral tinnitus, based on >50% suppression applying TMS. Results were analyzed for pure tone tinnitus and white noise tinnitus., Results: TMS results in 77% pure tone tinnitus and 67% white noise reduction. Electrical stimulation via an implanted electrode results in a mean of 97% pure tone tinnitus and 24% white noise suppression. Mean Visual Analogue Scale score decreases from 9.5 to 1.5 for pure tone and from 8.8 to 6.8 for white noise postoperatively., Discussion: Pure tone tinnitus might be the conscious percept of focal neuronal hyperactivity of the auditory cortex. Once visualized, this hyperactivity can be modulated by neurostimulation., Conclusion: The preliminary results of the first implantations suggest that patients with unilateral pure tone tinnitus are good surgical candidates for electrode implantation and permanent electrical stimulation of the auditory cortex, provided that the tinnitus is of recent origin and can be suppressed by TMS., (Copyright (c) 2006 S. Karger AG, Basel.)
- Published
- 2006
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24. Transcranial magnetic stimulation for tinnitus: influence of tinnitus duration on stimulation parameter choice and maximal tinnitus suppression.
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De Ridder D, Verstraeten E, Van der Kelen K, De Mulder G, Sunaert S, Verlooy J, Van de Heyning P, and Moller A
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- Humans, Retrospective Studies, Time Factors, Auditory Cortex physiopathology, Electric Stimulation Therapy methods, Tinnitus physiopathology, Tinnitus therapy, Transcranial Magnetic Stimulation
- Abstract
Objective: Tinnitus is a distressing symptom for which few treatments exist. It leads to an important decrease in quality of life in 2 to 3% of the population. Tinnitus is considered a phantom sound, the result of cortical reorganization. Transcranial magnetic stimulation (TMS) is a noninvasive method to modulate cortical reorganization and has been shown to be able to influence tinnitus perception., Study Design: Retrospective analysis., Setting: Tertiary referral center., Patients: The effect of TMS of the contralateral auditory cortex in 114 patients with unilateral tinnitus is investigated as one of the selection criteria used for surgical implantation of electrodes on the auditory cortex., Intervention: TMS is performed at 90% of motor threshold at 1, 3, 5, 10, and 20 Hz, with each stimulation session consisting of 200 pulses. Results were classified as no effect (0-19% improvement), partial effect (20-79% improvement), and good effect (80-100 suppression)., Main Outcome Measures: TMS had a good effect in 25% of the patients studied, partial effect in 28% patients, and no effect in 47%., Results: TMS at 200 pulses is capable of tinnitus suppression for seconds only. The results were influenced by tinnitus duration: the longer the tinnitus exists, the lower the stimulation frequency that yields maximal tinnitus suppression (p < 0.001). The maximal amount of tinnitus suppression decreases in time (p < 0.01), resulting in a 2% decrease of potential tinnitus suppression per year., Conclusion: TMS of the auditory cortex is capable of modifying tinnitus perception for a very short time. The maximal amount of suppression and best stimulation frequency depends on the tinnitus duration.
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- 2005
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25. A comprehensive analysis of hydrogen peroxide-induced gene expression in tobacco.
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Vandenabeele S, Van Der Kelen K, Dat J, Gadjev I, Boonefaes T, Morsa S, Rottiers P, Slooten L, Van Montagu M, Zabeau M, Inze D, and Van Breusegem F
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- Cell Death drug effects, Gene Amplification, Gene Expression Regulation, Plant drug effects, Light, Polymorphism, Genetic, Signal Transduction drug effects, Signal Transduction physiology, Nicotiana drug effects, Nicotiana growth & development, Gene Expression Regulation, Plant genetics, Hydrogen Peroxide pharmacology, Nicotiana genetics, Transcription, Genetic drug effects
- Abstract
Hydrogen peroxide plays a central role in launching the defense response during stress in plants. To establish a molecular profile provoked by a sustained increase in hydrogen peroxide levels, catalase-deficient tobacco plants (CAT1AS) were exposed to high light (HL) intensities over a detailed time course. The expression kinetics of >14000 genes were monitored by using transcript profiling technology based on cDNA-amplified fragment length polymorphism. Clustering and sequence analysis of 713 differentially expressed transcript fragments revealed a transcriptional response that mimicked that reported during both biotic and abiotic stresses, including the up-regulation of genes involved in the hypersensitive response, vesicular transport, posttranscriptional processes, biosynthesis of ethylene and jasmonic acid, proteolysis, mitochondrial metabolism, and cell death, and was accompanied by a very rapid up-regulation of several signal transduction components. Expression profiling corroborated by functional experiments showed that HL induced photoinhibition in CAT1AS plants and that a short-term HL exposure of CAT1AS plants triggered an increased tolerance against a subsequent severe oxidative stress.
- Published
- 2003
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