22 results on '"Valle-Rios R"'
Search Results
2. IFN-γ stimulates Paneth cell secretion through necroptosis mTORC1 dependent.
- Author
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Encarnacion-Garcia MR, De la Torre-Baez R, Hernandez-Cueto MA, Velázquez-Villegas LA, Candelario-Martinez A, Sánchez-Argáez AB, Horta-López PH, Montoya-García A, Jaimes-Ortega GA, Lopez-Bailon L, Piedra-Quintero Z, Carrasco-Torres G, De Ita M, Figueroa-Corona MDP, Muñoz-Medina JE, Sánchez-Uribe M, Ortiz-Fernández A, Meraz-Ríos MA, Silva-Olivares A, Betanzos A, Baay-Guzman GJ, Navarro-Garcia F, Villa-Treviño S, Garcia-Sierra F, Cisneros B, Schnoor M, Ortíz-Navarrete VF, Villegas-Sepúlveda N, Valle-Rios R, Medina-Contreras O, Noriega LG, and Nava P
- Subjects
- Animals, Mice, Reactive Oxygen Species metabolism, Mice, Inbred C57BL, Mice, Knockout, Mitochondria metabolism, Intestinal Mucosa metabolism, Intestinal Mucosa immunology, Intestine, Small metabolism, Intestine, Small immunology, Mechanistic Target of Rapamycin Complex 1 metabolism, Paneth Cells metabolism, Interferon-gamma metabolism, Necroptosis immunology
- Abstract
Immune mediators affect multiple biological functions of intestinal epithelial cells (IECs) and, like Paneth and Paneth-like cells, play an important role in intestinal epithelial homeostasis. IFN-γ a prototypical proinflammatory cytokine disrupts intestinal epithelial homeostasis. However, the mechanism underlying the process remains unknown. In this study, using in vivo and in vitro models we demonstrate that IFN-γ is spontaneously secreted in the small intestine. Furthermore, we observed that this cytokine stimulates mitochondrial activity, ROS production, and Paneth and Paneth-like cell secretion. Paneth and Paneth-like secretion downstream of IFN-γ, as identified here, is mTORC1 and necroptosis-dependent. Thus, our findings revealed that the pleiotropic function of IFN-γ also includes the regulation of Paneth cell function in the homeostatic gut., (© 2024 The Author(s). European Journal of Immunology published by Wiley‐VCH GmbH.)
- Published
- 2024
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3. Shotgun Proteomics of Co-Cultured Leukemic and Bone Marrow Stromal Cells from Different Species as a Preliminary Approach to Detect Intercellular Protein Transfer.
- Author
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Nevárez-Ramírez AJ, Guzmán-Ortiz AL, Cortes-Reynosa P, Perez-Salazar E, Jaimes-Ortega GA, Valle-Rios R, Marín-Hernández Á, Rodríguez-Zavala JS, Ruiz-May E, Castrejón-Flores JL, and Quezada H
- Abstract
Cellular interactions within the bone marrow microenvironment modulate the properties of subsets of leukemic cells leading to the development of drug-resistant phenotypes. The intercellular transfer of proteins and organelles contributes to this process but the set of transferred proteins and their effects in the receiving cells remain unclear. This study aimed to detect the intercellular protein transfer from mouse bone marrow stromal cells (OP9 cell line) to human T-lymphoblasts (CCRF-CEM cell line) using nanoLC-MS/MS-based shotgun proteomics in a 3D co-culture system. After 24 h of co-culture, 1513 and 67 proteins from human and mouse origin, respectively, were identified in CCRF-CEM cells. The presence of mouse proteins in the human cell line, detected by analyzing the differences in amino acid sequences of orthologous peptides, was interpreted as the result of intercellular transfer. The transferred proteins might have contributed to the observed resistance to vincristine, methotrexate, and hydrogen peroxide in the co-cultured leukemic cells. Our results suggest that shotgun proteomic analyses of co-cultured cells from different species could be a simple option to get a preliminary survey of the proteins exchanged among interacting cells.
- Published
- 2023
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4. Leukocyte surface expression of the endoplasmic reticulum chaperone GRP78 is increased in severe COVID-19.
- Author
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Angeles-Floriano T, Sanjuan-Méndez A, Rivera-Torruco G, Parra-Ortega I, Lopez-Martinez B, Martinez-Castro J, Marin-Santiago S, Alcántara-Hernández C, Martínez-Martínez A, Márquez-González H, Klünder-Klünder M, Olivar-López V, Zaragoza-Ojeda M, Arenas-Huertero F, Torres-Aguilar H, Medina-Contreras O, Zlotnik A, and Valle-Rios R
- Subjects
- Humans, Heat-Shock Proteins genetics, Heat-Shock Proteins metabolism, Leukocytes, Mononuclear metabolism, Molecular Chaperones genetics, Endoplasmic Reticulum metabolism, Endoplasmic Reticulum Stress, Endoplasmic Reticulum Chaperone BiP, COVID-19 metabolism
- Abstract
Hyperinflammation present in individuals with severe COVID-19 has been associated with an exacerbated cytokine production and hyperactivated immune cells. Endoplasmic reticulum stress leading to the unfolded protein response has been recently reported as an active player in inducing inflammatory responses. Once unfolded protein response is activated, GRP78, an endoplasmic reticulum-resident chaperone, is translocated to the cell surface (sGRP78), where it is considered a cell stress marker; however, its presence has not been evaluated in immune cells during disease. Here we assessed the presence of sGRP78 on different cell subsets in blood samples from severe or convalescent COVID-19 patients. The frequency of CD45+sGRP78+ cells was higher in patients with the disease compared to convalescent patients. The latter showed similar frequencies to healthy controls. In patients with COVID-19, the lymphoid compartment showed the highest presence of sGRP78+ cells versus the myeloid compartment. CCL2, TNF-α, C-reactive protein, and international normalized ratio measurements showed a positive correlation with the frequency of CD45+sGRP78+ cells. Finally, gene expression microarray data showed that activated T and B cells increased the expression of GRP78, and peripheral blood mononuclear cells from healthy donors acquired sGRP78 upon activation with ionomycin and PMA. Thus, our data highlight the association of sGRP78 on immune cells in patients with severe COVID-19., (© The Author(s) 2023. Published by Oxford University Press on behalf of Society for Leukocyte Biology. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2023
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5. IL-36γ is secreted through an unconventional pathway using the Gasdermin D and P2X7R membrane pores.
- Author
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Manzanares-Meza LD, Gutiérrez-Román CI, Jiménez-Pineda A, Castro-Martínez F, Patiño-López G, Rodríguez-Arellano E, Valle-Rios R, Ortíz-Navarrete VF, and Medina-Contreras O
- Subjects
- Animals, Biological Transport, Cytokines metabolism, Interleukin-1, Mice, Immunity, Mucosal, Phosphate-Binding Proteins metabolism, Pore Forming Cytotoxic Proteins metabolism, Receptors, Purinergic P2X7 metabolism
- Abstract
Mucosal innate immunity functions as the first line of defense against invading pathogens. Members of the IL-1 family are key cytokines upregulated in the inflamed mucosa. Inflammatory cytokines are regulated by limiting their function and availability through their activation and secretion mechanisms. IL-1 cytokines secretion is affected by the lack of a signal peptide on their sequence, which prevents them from accessing the conventional protein secretion pathway; thus, they use unconventional protein secretion pathways. Here we show in mouse macrophages that LPS/ATP stimulation induces cytokine relocalization to the plasma membrane, and conventional secretion blockade using monensin or Brefeldin A triggers no IL-36γ accumulation within the cell. In silico modeling indicates IL-36γ can pass through both the P2X7R and Gasdermin D pores, and both IL-36γ, P2X7R and Gasdermin D mRNA are upregulated in inflammation; further, experimental blockade of these receptors' limits IL-36γ release. Our results demonstrate that IL-36γ is secreted mainly by an unconventional pathway through membrane pores formed by P2X7R and Gasdermin D., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Manzanares-Meza, Gutiérrez-Román, Jiménez-Pineda, Castro-Martínez, Patiño-López, Rodríguez-Arellano, Valle-Rios, Ortíz-Navarrete and Medina-Contreras.)
- Published
- 2022
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6. Isthmin 1 is Expressed by Progenitor-Like Cells in the Lung: Phenotypical Analysis of Isthmin 1 + Hematopoietic Stem-Like Cells in Homeostasis and during Infection.
- Author
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Rivera-Torruco G, Martínez-Mendiola CA, Angeles-Floriano T, Jaimes-Ortega GA, Maravillas-Montero JL, García-Contreras R, González Y, Juárez E, Nava P, Ortiz-Navarrete V, Medina-Contreras O, Licona-Limón P, and Valle-Rios R
- Subjects
- Animals, Hematopoiesis, Homeostasis, Intercellular Signaling Peptides and Proteins metabolism, Lung metabolism, Mice, Mice, Inbred C57BL, Proteins, Hematopoietic Stem Cells, Sepsis metabolism
- Abstract
The process by which blood cells are generated has been widely studied in homeostasis and during pathogen-triggered inflammatory response. Recently, murine lungs have been shown to be a significant source of hematopoietic progenitors in a process known as extramedullary hematopoiesis. Using multiparametric flow cytometry, we have identified mesenchymal, endothelial, and hematopoietic progenitor cells that express the secreted small protein Isthmin 1 (ISM1). Further characterization of hematopoietic progenitor cells indicated that ISM1
+ Lineage- Sca-1+ c-kit+ (ISM1+ LSK) cells are enriched in short-term hematopoietic stem cells (ST-HSCs). Moreover, most Sca-1+ ISM1+ cells express the residence marker CD49a, and this correlated with their localization in the extravascular region of the lung, indicating that ISM1+ cells are lung-resident cells. We also observed that ISM1+ cells express TLR4, TLR5, and TLR9, and, in a mouse model of sepsis induced by P. aeruginosa , we observed that all the LSK and ISM1+ LSK cells were affected. We conclude that ISM1 is a novel biomarker associated with progenitor-like cells. ISM1+ cells are involved in the response to a bacterial challenge, suggesting an association between ISM1-producing cells and dangerous inflammatory responses like sepsis., Competing Interests: The authors declare no conflict of interest., (Copyright © 2022 Guadalupe Rivera-Torruco et al.)- Published
- 2022
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7. Cell surface expression of GRP78 and CXCR4 is associated with childhood high-risk acute lymphoblastic leukemia at diagnostics.
- Author
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Angeles-Floriano T, Rivera-Torruco G, García-Maldonado P, Juárez E, Gonzalez Y, Parra-Ortega I, Vilchis-Ordoñez A, Lopez-Martinez B, Arriaga-Pizano L, Orozco-Ruíz D, Torres-Nava JR, Licona-Limón P, López-Sosa F, Bremer A, Alvarez-Arellano L, and Valle-Rios R
- Subjects
- Adolescent, Animals, Antigens, CD metabolism, Cell Line, Child, Child, Preschool, Female, Humans, Male, Mice, Inbred BALB C, Neoplasm Transplantation, Neoplastic Cells, Circulating metabolism, Precursor Cell Lymphoblastic Leukemia-Lymphoma etiology, Risk Factors, Mice, Endoplasmic Reticulum Chaperone BiP metabolism, Precursor Cell Lymphoblastic Leukemia-Lymphoma metabolism, Receptors, CXCR4 metabolism
- Abstract
Acute lymphocytic leukemia is the most common type of cancer in pediatric individuals. Glucose regulated protein (GRP78) is an endoplasmic reticulum chaperone that facilitates the folding and assembly of proteins and regulates the unfolded protein response pathway. GRP78 has a role in survival of cancer and metastasis and cell-surface associated GRP78 (sGRP78) is expressed on cancer cells but not in normal cells. Here, we explored the presence of sGRP78 in pediatric B-ALL at diagnosis and investigated the correlation with bona fide markers of leukemia. By using a combination of flow cytometry and high multidimensional analysis, we found a distinctive cluster containing high levels of sGRP78, CD10, CD19, and CXCR4 in bone marrow samples obtained from High-risk leukemia patients, which was absent in the compartment of Standard-risk leukemia. We confirmed that sGRP78
+ CXCR4+ blood-derived cells were more frequent in High-risk leukemia patients. Finally, we analyzed the dissemination capacity of sGRP78 leukemia cells in a model of xenotransplantation. sGRP78+ cells emigrated to the bone marrow and lymph nodes, maintaining the expression of CXCR4. Testing the presence of sGRP78 and CXCR4 together with conventional markers may help to achieve a better categorization of High and Standard-risk pediatric leukemia at diagnosis., (© 2022. The Author(s).)- Published
- 2022
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8. Interleukin-1 Receptor-Like 2: One Receptor, Three Agonists, and Many Implications.
- Author
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Manzanares-Meza LD, Valle-Rios R, and Medina-Contreras O
- Subjects
- Animals, COVID-19 physiopathology, Cytokine Release Syndrome physiopathology, Cytokines physiology, Host-Pathogen Interactions, Humans, Interleukin-1 physiology, Interleukins classification, Intestines metabolism, Intestines pathology, Ligands, Lung metabolism, Lung pathology, MAP Kinase Signaling System, Mice, NF-kappa B metabolism, Protein Domains, Receptors, Interleukin classification, Receptors, Interleukin-1 agonists, Receptors, Interleukin-1 antagonists & inhibitors, Receptors, Interleukin-1 chemistry, SARS-CoV-2, Signal Transduction, Skin metabolism, Skin pathology, Inflammation physiopathology, Receptors, Interleukin-1 physiology
- Abstract
The interleukin (IL)-1 superfamily of cytokines comprises 11 pro- and anti-inflammatory cytokines, which play essential roles during the immune response. Several pathogenic pathways are initiated by IL-1RL2 (interleukin 1 receptor-like 2) signaling, also known as IL-36R, in the skin, lungs, and gut. IL-36 cytokines promote the secretion of proinflammatory cytokines and chemokines, upregulation of antimicrobial peptides, proliferation mediators, and adhesion molecules on endothelial cells. In addition, the IL-36-IL-1RL2 axis has an essential role against viral infections, including a potential role in COVID-19 pathology. The evidence presented in this review highlights the importance of the axis IL-36-IL-1RL2 in the development of several inflammation-related diseases and the healing process. It suggests that IL-1RL2 ligands have specific roles depending on the tissue or cell source. However, there is still much to discover about this cytokine family, their functions in other organs, and how they accomplish a dual effect in inflammation and healing.
- Published
- 2022
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9. Flagella, Type I Fimbriae and Curli of Uropathogenic Escherichia coli Promote the Release of Proinflammatory Cytokines in a Coculture System.
- Author
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Vega-Hernández R, Ochoa SA, Valle-Rios R, Jaimes-Ortega GA, Arellano-Galindo J, Aparicio-Ozores G, Ibarra JA, Hernández-Castro R, Cruz-Córdova A, and Xicohtencatl-Cortes J
- Abstract
Background: Urinary tract infections (UTIs) are a public health problem in Mexico, and uropathogenic Escherichia coli (UPEC) is one of the main etiological agents. Flagella, type I fimbriae, and curli promote the ability of these bacteria to successfully colonize its host., Aim: This study aimed to determine whether flagella-, type I fimbriae-, and curli-expressing UPEC induces the release of proinflammatory cytokines in an established coculture system., Methods: The fliC , fimH , and csgA genes by UPEC strain were disrupted by allelic replacement. Flagella, type I fimbriae, and curli were visualized by transmission electron microscopy (TEM). HTB-5 (upper chamber) and HMC-1 (lower chamber) cells cocultured in Transwell
® plates were infected with these UPEC strains and purified proteins. There was adherence to HTB-5 cells treated with different UPEC strains and they were quantified as colony-forming units (CFU)/mL., Results: High concentrations of IL-6 and IL-8 were induced by the FimH and FliC proteins; however, these cytokines were detected in low concentrations in presence of CsgA. Compared with UPEC CFT073, CFT073Δ fimH , CFT073Δ fimH Δ fliC , and CFT073Δ csgA Δ fimH strains significantly reduced the adherence to HTB-5 cells., Conclusion: The FimH and FliC proteins are involved in IL-6 and IL-8 release in a coculture model of HTB-5 and HMC-1 cells.- Published
- 2021
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10. Interaction of HLA Class II rs9272219 and TMPO rs17028450 (Arg690Cys) Variants Affects Neuromyelitis Optica Spectrum Disorder Susceptibility in an Admixed Mexican Population.
- Author
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Rosas-Madrigal S, Villarreal-Molina MT, Flores-Rivera J, Rivas-Alonso V, Macias-Kauffer LR, Ordoñez G, Chima-Galán MDC, Acuña-Alonzo V, Macín-Pérez G, Barquera R, Granados J, Valle-Rios R, Corona T, Carnevale A, and Romero-Hidalgo S
- Abstract
Neuromyelitis Optica Spectrum Disorder (NMOSD) is a demyelinating autoimmune disease of the central nervous system, more prevalent in individuals of non-European ancestry. Few studies have analyzed genetic risk factors in NMOSD, and HLA class II gene variation has been associated NMOSD risk in various populations including Mexicans. Thymopoietin ( TMPO ) has not been tested as a candidate gene for NMOSD or other autoimmune disease, however, experimental evidence suggests this gene may be involved in negative selection of autoreactive T cells and autoimmunity. We thus investigated whether the missense TMPO variant rs17028450 (Arg630Cys, frequent in Latin America) is associated with NMOSD, and whether this variant shows an interaction with HLA-class II rs9272219, previously associated with NMOSD risk. A total of 119 Mexican NMOSD patients, 1208 controls and 357 Native Mexican individuals were included. The HLA rs9272219 "T" risk allele frequency ranged from 21 to 68%, while the rs17028450 "T" minor allele frequency was as high as 18% in Native Mexican groups. Both rs9272219 and rs17028450 were significantly associated with NMOSD risk under additive models ( OR = 2.48; p = 8 × 10
-10 and OR = 1.59; p = 0.0075, respectively), and a significant interaction between both variants was identified with logistic regression models ( p = 0.048). Individuals bearing both risk alleles had an estimated 3.9-fold increased risk of NMOSD. To our knowledge, this is the first study reporting an association of TMPO gene variation with an autoimmune disorder and the interaction of specific susceptibility gene variants, that may contribute to the genetic architecture of NMOSD in admixed Latin American populations., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Rosas-Madrigal, Villarreal-Molina, Flores-Rivera, Rivas-Alonso, Macias-Kauffer, Ordoñez, Chima-Galán, Acuña-Alonzo, Macín-Pérez, Barquera, Granados, Valle-Rios, Corona, Carnevale and Romero-Hidalgo.)- Published
- 2021
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11. Cytotoxic and genotoxic effects of Benzo[ghi]perylene on the human bronchial cell line NL-20.
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Castro-Gálvez Z, Garrido-Armas M, Palacios-Arreola MI, Torres-Flores U, Rivera-Torruco G, Valle-Rios R, Amador-Muñoz O, Hernández-Hernández A, and Arenas-Huertero F
- Subjects
- Apoptosis drug effects, Bronchi cytology, Cell Line, Cell Proliferation drug effects, Histones metabolism, Humans, Perylene toxicity, Air Pollutants toxicity, DNA Damage, Perylene analogs & derivatives
- Abstract
Benzo[ghi]perylene is the most abundant polycyclic aromatic hydrocarbon in the atmosphere of highly polluted cities with high altitudes like Mexico City. We evaluated the in vitro cytotoxic and genotoxic effects that Benzo[ghi]perylene could induce to the bronchial cell line NL-20 after 3 h of exposure. Furthermore, exposed cells were washed and maintained for 24 h without the treatment (recovery time), in order to evaluate a persistent damage to the cells. We found that at 3 h of exposure, 20% and 47% of the cells displayed cytoplasmic vesicles (p <0.05) and ɣH2AX foci in the nuclei (p <0.05), respectively. Furthermore, 27% of cells showed translocation of the factor inductor apoptosis into the nuclei (p <0.05) and an increase of proliferating cells was also observed (21%, p <0.05). The cells after recovery time continued displaying morphological changes and ɣH2AX foci, despite of the increased expression (> 2-times fold change) of some DNA repair genes (p <0.05) found before the recovery time. We also found that the cell nuclei contained Benzo[ghi]perylene after the exposure and it remains there after the recovery time (p <0.01). Therefore, hereby we report the cytotoxic and genotoxic effects that Benzo[ghi]perylene is capable to induce to NL-20 cells., (Copyright © 2019 Elsevier Ltd. All rights reserved.)
- Published
- 2019
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12. Innate-like B cell subsets during immune responses: Beyond antibody production.
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Romero-Ramírez S, Navarro-Hernandez IC, Cervantes-Díaz R, Sosa-Hernández VA, Acevedo-Ochoa E, Kleinberg-Bild A, Valle-Rios R, Meza-Sánchez DE, Hernández-Hernández JM, and Maravillas-Montero JL
- Subjects
- Animals, Antibodies genetics, Antigens, CD genetics, Antigens, CD immunology, B-Lymphocyte Subsets classification, B-Lymphocyte Subsets cytology, Cell Communication immunology, Cell Lineage genetics, Cell Lineage immunology, Cytokines genetics, Gene Expression, Humans, Antibodies immunology, B-Lymphocyte Subsets immunology, Cytokines immunology, Immunity, Cellular, Immunity, Humoral, Immunity, Innate
- Abstract
B lymphocytes are recognized for their crucial role in the adaptive immunity since they represent the only leukocyte lineage capable of differentiating into Ab-secreting cells. However, it has been demonstrated that these lymphocytes can exert several Ab-independent functions, including engulfing and processing Ags for presentation to T cells, secreting soluble mediators, providing co-stimulatory signals, and even participating in lymphoid tissues development. Beyond that, several reports claiming the existence of multiple B cell subsets contributing directly to innate immune responses have appeared. These "innate-like" B lymphocytes, whose phenotype, development pathways, tissue distribution, and functions are in most cases notoriously different from those of conventional B cells, are crucial to early protective responses against pathogens by exerting "crossover" defensive strategies that blur the established boundaries of innate and adaptive branches of immunity. Examples of these mechanisms include the rapid secretion of the polyspecific natural Abs, increased susceptibility to innate receptors-mediated activation, cytokine secretion, downstream priming of other innate cells, usage of specific variable immunoglobulin gene-segments, and other features. As these new insights emerge, it is becoming preponderant to redefine the functionality of B cells beyond their classical adaptive-immune tasks., (©2018 Society for Leukocyte Biology.)
- Published
- 2019
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13. Proteomic changes in a childhood acute lymphoblastic leukemia cell line during the adaptation to vincristine.
- Author
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Guzmán-Ortiz AL, Aparicio-Ozores G, Valle-Rios R, Medina-Contreras O, Patiño-López G, and Quezada H
- Subjects
- Adenosine Triphosphate metabolism, Cell Line, Tumor, Cell Proliferation drug effects, Child, Chromatography, High Pressure Liquid, Drug Resistance, Neoplasm, Gene Expression Regulation, Leukemic, Humans, Mitochondria metabolism, Precursor Cell Lymphoblastic Leukemia-Lymphoma genetics, Proteins metabolism, Proteome metabolism, Signal Transduction drug effects, Spectrometry, Mass, Electrospray Ionization, Antineoplastic Agents, Phytogenic pharmacology, Precursor Cell Lymphoblastic Leukemia-Lymphoma drug therapy, Proteomics methods, Vincristine pharmacology
- Abstract
Introduction: Relapse occurs in approximately 20% of Mexican patients with childhood acute lymphoblastic leukemia (ALL). In this group, chemoresistance may be one of the biggest challenges. An overview of complex cellular processes like drug tolerance can be achieved with proteomic studies., Methods: The B-lineage pediatric ALL cell line CCRF-SB was gradually exposed to the chemotherapeutic vincristine until proliferation was observed at 6nM, control cells were cultured in the absence of vincristine. The proteome from each group was analyzed by nanoHPLC coupled to an ESI-ion trap mass spectrometer. The identified proteins were grouped into overrepresented functional categories with the PANTHER classification system., Results: We found 135 proteins exclusively expressed in the presence of vincristine. The most represented functional categories were: Toll receptor signaling pathway, Ras Pathway, B and T cell activation, CCKR signaling map, cytokine-mediated signaling pathway, and oxidative phosphorylation., Conclusions: Our study indicates that signal transduction and mitochondrial ATP production are essential during adaptation of leukemic cells to vincristine, these processes represent potential therapeutic targets., (Copyright © 2017 Hospital Infantil de México Federico Gómez. Publicado por Masson Doyma México S.A. All rights reserved.)
- Published
- 2017
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14. Omics-based biomarkers: current status and potential use in the clinic.
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Quezada H, Guzmán-Ortiz AL, Díaz-Sánchez H, Valle-Rios R, and Aguirre-Hernández J
- Subjects
- Animals, Genomics methods, Humans, Metabolomics methods, Microbiota, Proteomics methods, Biomarkers, Tumor metabolism, High-Throughput Screening Assays methods, Neoplasms pathology
- Abstract
In recent years, the use of high-throughput omics technologies has led to the rapid discovery of many candidate biomarkers. However, few of them have made the transition to the clinic. In this review, the promise of omics technologies to contribute to the process of biomarker development is described. An overview of the current state in this area is presented with examples of genomics, proteomics, transcriptomics, metabolomics and microbiomics biomarkers in the field of oncology, along with some proposed strategies to accelerate their validation and translation to improve the care of patients with neoplasms. The inherent complexity underlying neoplasms combined with the requirement of developing well-designed biomarker discovery processes based on omics technologies present a challenge for the effective development of biomarkers that may be useful in guiding therapies, addressing disease risks, and predicting clinical outcomes., (Copyright © 2017 Hospital Infantil de México Federico Gómez. Publicado por Masson Doyma México S.A. All rights reserved.)
- Published
- 2017
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15. Omics techniques and biobanks to find new biomarkers for the early detection of acute lymphoblastic leukemia in middle-income countries: a perspective from Mexico.
- Author
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Aguirre-Guillén WA, Angeles-Floriano T, López-Martínez B, Reyes-Morales H, Zlotnik A, and Valle-Rios R
- Subjects
- Biological Specimen Banks, Child, Early Diagnosis, Humans, Mexico, Precision Medicine methods, Precursor Cell Lymphoblastic Leukemia-Lymphoma pathology, Quality of Life, Biomarkers, Tumor metabolism, Metabolomics methods, Precursor Cell Lymphoblastic Leukemia-Lymphoma diagnosis, Proteomics methods
- Abstract
Acute lymphoblastic leukemia (ALL) affects the quality of life of many children in the world and particularly in Mexico, where a high incidence has been reported. With a proper financial investment and with well-organized institutions caring for those patients, together with solid platforms to perform high-throughput analyses, we propose the creation of a Mexican repository system of serum and cells from bone marrow and blood samples derived from tissues of pediatric patients with ALL diagnosis. This resource, in combination with omics technologies, particularly proteomics and metabolomics, would allow longitudinal studies, offering an opportunity to design and apply personalized ALL treatments. Importantly, it would accelerate the development of translational science and will lead us to further discoveries, including the identification of new biomarkers for the early detection of leukemia., (Copyright © 2017 Hospital Infantil de México Federico Gómez. Publicado por Masson Doyma México S.A. All rights reserved.)
- Published
- 2017
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16. The pro-inflammatory cytokines IFNγ/TNFα increase chromogranin A-positive neuroendocrine cells in the colonic epithelium.
- Author
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Hernández-Trejo JA, Suárez-Pérez D, Gutiérrez-Martínez IZ, Fernandez-Vargas OE, Serrano C, Candelario-Martínez AA, Meraz-Ríos MA, Citalán-Madrid AF, Hernández-Ruíz M, Reyes-Maldonado E, Valle-Rios R, Feintuch-Unger JH, Schnoor M, Villegas-Sepúlveda N, Medina-Contreras O, and Nava P
- Subjects
- Animals, Autophagy drug effects, Blotting, Western, Caco-2 Cells, Colitis metabolism, Fluorescent Antibody Technique, Humans, Interferon-gamma pharmacology, Interleukin-1beta pharmacology, Intestinal Mucosa cytology, Intestinal Mucosa metabolism, Male, Mice, Mice, Inbred C57BL, Proto-Oncogene Proteins c-akt metabolism, Tumor Necrosis Factor-alpha pharmacology, Chromogranin A metabolism, Colon cytology, Cytokines pharmacology, Epithelium drug effects, Epithelium metabolism, Neuroendocrine Cells drug effects, Neuroendocrine Cells metabolism
- Abstract
The gastrointestinal tract is the largest hormone-producing organ in the body due to a specialized cell population called enteroendocrine cells (EECs). The number of EECs increases in the mucosa of inflammatory bowel disease patients; however, the mechanisms responsible for these changes remain unknown. Here, we show that the pro-inflammatory cytokines interferon γ (IFNγ) and tumor necrosis factor α (TNFα) or dextran sulfate sodium (DSS)-induced colitis increase the number of EECs producing chromogranin A (CgA) in the colonic mucosa of C57BL/6J mice. CgA-positive cells were non-proliferating cells enriched with inactive phosphatase and tensin homolog deleted on chromosome 10 (PTEN) and autophagy markers. Moreover, inhibition of Akt and autophagy prevented the increase in CgA-positive cells after IFNγ/TNFα treatment. Similarly, we observed that CgA-positive cells in the colonic mucosa of patients with colitis expressed Akt and autophagy markers. These findings suggest that Akt signaling and autophagy control differentiation of the intestinal EEC lineage during inflammation., (© 2016 The Author(s); published by Portland Press Limited on behalf of the Biochemical Society.)
- Published
- 2016
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17. METEORIN-LIKE is a cytokine associated with barrier tissues and alternatively activated macrophages.
- Author
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Ushach I, Burkhardt AM, Martinez C, Hevezi PA, Gerber PA, Buhren BA, Schrumpf H, Valle-Rios R, Vazquez MI, Homey B, and Zlotnik A
- Subjects
- Animals, Arthritis, Rheumatoid metabolism, Bone Marrow Cells metabolism, Cells, Cultured, Dermatitis, Atopic metabolism, Endothelial Cells metabolism, Humans, Keratinocytes metabolism, Keratosis, Actinic metabolism, Mice, Mice, Inbred BALB C, Mice, Inbred C57BL, Nerve Growth Factors genetics, Prurigo metabolism, Psoriasis metabolism, Skin cytology, Synovial Membrane metabolism, Up-Regulation, Cytokines biosynthesis, Macrophage Activation immunology, Macrophages immunology, Nerve Growth Factors immunology, Skin metabolism
- Abstract
Cytokines are involved in many functions of the immune system including initiating, amplifying and resolving immune responses. Through bioinformatics analyses of a comprehensive database of gene expression (BIGE: Body Index of Gene Expression) we observed that a small secreted protein encoded by a poorly characterized gene called meteorin-like (METRNL), is highly expressed in mucosal tissues, skin and activated macrophages. Further studies indicate that Metrnl is produced by Alternatively Activated Macrophages (AAM) and M-CSF cultured bone marrow macrophages (M2-like macrophages). In the skin, METRNL is expressed by resting fibroblasts and IFNγ-treated keratinocytes. A screen of human skin-associated diseases showed significant over-expression of METRNL in psoriasis, prurigo nodularis, actinic keratosis and atopic dermatitis. METRNL is also up-regulated in synovial membranes of human rheumatoid arthritis. Taken together, these results indicate that Metrnl represents a novel cytokine, which is likely involved in both innate and acquired immune responses., (Copyright © 2014 Elsevier Inc. All rights reserved.)
- Published
- 2015
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18. Isthmin 1 is a secreted protein expressed in skin, mucosal tissues, and NK, NKT, and th17 cells.
- Author
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Valle-Rios R, Maravillas-Montero JL, Burkhardt AM, Martinez C, Buhren BA, Homey B, Gerber PA, Robinson O, Hevezi P, and Zlotnik A
- Subjects
- Animals, Cells, Cultured, Computational Biology, Gene Expression Regulation, Humans, Intercellular Signaling Peptides and Proteins, Interferon-gamma metabolism, Mice, Mice, Inbred BALB C, Mice, Inbred C57BL, Microarray Analysis, Mucous Membrane immunology, Proteins genetics, Thrombospondins genetics, Killer Cells, Natural immunology, Natural Killer T-Cells immunology, Proteins metabolism, Skin immunology, Th17 Cells immunology, Thrombospondins metabolism
- Abstract
Using a comprehensive microarray database of human gene expression, we identified that in mammals, a secreted protein known as isthmin 1 (ISM1) is expressed in skin, mucosal tissues, and selected lymphocyte populations. ISM1 was originally identified in Xenopus brain during development, and it encodes a predicted ∼50-kDa protein containing a signal peptide, a thrombospondin domain, and an adhesion-associated domain. We confirmed the pattern of expression of ISM1 in both human and mouse tissues. ISM1 is expressed by DX5(+) lung lymphocytes that include NK and NKT-like cells, and is also expressed by some CD4(+) T cells upon activation but its expression increases significantly when CD4(+) T cells were polarized to the Th17 lineage in vitro. The presence of IFN-γ during CD4(+) T cell polarization inhibits ISM1 expression. Given that ISM1 has been reported to have anti-angiogenic properties, these observations suggest that ISM1 is a mediator of lymphocyte effector functions and may participate in both innate and acquired immune responses.
- Published
- 2014
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19. CXCL17 is a mucosal chemokine elevated in idiopathic pulmonary fibrosis that exhibits broad antimicrobial activity.
- Author
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Burkhardt AM, Tai KP, Flores-Guiterrez JP, Vilches-Cisneros N, Kamdar K, Barbosa-Quintana O, Valle-Rios R, Hevezi PA, Zuñiga J, Selman M, Ouellette AJ, and Zlotnik A
- Subjects
- Aged, Anti-Bacterial Agents metabolism, Bronchoalveolar Lavage Fluid chemistry, Bronchoalveolar Lavage Fluid immunology, Chemokines, CXC metabolism, Enzyme-Linked Immunosorbent Assay, Female, Humans, Idiopathic Pulmonary Fibrosis metabolism, Immunohistochemistry, Male, Middle Aged, Real-Time Polymerase Chain Reaction, Respiratory Mucosa chemistry, Respiratory Mucosa metabolism, Anti-Bacterial Agents immunology, Chemokines, CXC immunology, Idiopathic Pulmonary Fibrosis immunology, Immunity, Innate immunology, Respiratory Mucosa immunology
- Abstract
The mucosal immune network is a crucial barrier preventing pathogens from entering the body. The network of immune cells that mediates the defensive mechanisms in the mucosa is likely shaped by chemokines, which attract a wide range of immune cells to specific sites of the body. Chemokines have been divided into homeostatic or inflammatory depending upon their expression patterns. Additionally, several chemokines mediate direct killing of invading pathogens, as exemplified by CCL28, a mucosa-associated chemokine that exhibits antimicrobial activity against a range of pathogens. CXCL17 was the last chemokine ligand to be described and is the 17th member of the CXC chemokine family. Its expression pattern in 105 human tissues and cells indicates that CXCL17 is a homeostatic, mucosa-associated chemokine. Its strategic expression in mucosal tissues suggests that it is involved in innate immunity and/or sterility of the mucosa. To test the latter hypothesis, we tested CXCL17 for possible antibacterial activity against a panel of pathogenic and opportunistic bacteria. Our results indicate that CXCL17 has potent antimicrobial activities and that its mechanism of antimicrobial action involves peptide-mediated bacterial membrane disruption. Because CXCL17 is strongly expressed in bronchi, we measured it in bronchoalveolar lavage fluids and observed that it is strongly upregulated in idiopathic pulmonary fibrosis. We conclude that CXCL17 is an antimicrobial mucosal chemokine that may play a role in the pathogenesis of interstitial lung diseases.
- Published
- 2012
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20. CRTAM: A molecule involved in epithelial cell adhesion.
- Author
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Garay E, Patiño-López G, Islas S, Alarcón L, Canche-Pool E, Valle-Rios R, Medina-Contreras O, Granados G, Chávez-Munguía B, Juaristi E, Ortiz-Navarrete V, and González-Mariscal L
- Subjects
- Animals, Calcium metabolism, Cell Membrane metabolism, Cells, Cultured, Coculture Techniques, Desmosomes metabolism, Epithelial Cells cytology, Fibroblasts cytology, Fibroblasts physiology, Humans, Immunoglobulins genetics, Recombinant Proteins genetics, Recombinant Proteins metabolism, Tight Junctions metabolism, Cell Adhesion physiology, Epithelial Cells physiology, Immunoglobulins metabolism
- Abstract
Class I-restricted T cell associated molecule (CRTAM) is a member of the immunoglobulin superfamily that complies with the structural characteristics of the JAM family of proteins and is phylogenetically more closely related to nectin-like proteins. Here we demonstrate for the first time, that CRTAM is expressed in epithelial cells along the lateral membrane and is important for early cell-cell contacts and cell-substrate interactions. CRTAM is sensitive to intermediate filament disruption and treatment of monolayers with soluble CRTAM enhances cell-cell dissociation and lowers transepithelial electrical resistance. Incubation of newly plated cells with anti-CRTAM antibody decreases the formation of cell aggregates and promotes cell detachment. Co-cultures of epithelial cells and fibroblasts that lack CRTAM expression and in vitro binding assays, demonstrate the participation of CRTAM in homotypic and heterotypic trans-interactions. Hence we conclude that CRTAM is a molecule involved in epithelial cell adhesion., ((c) 2010 Wiley-Liss, Inc.)
- Published
- 2010
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21. Role of CRTAM during mouse early T lymphocytes development.
- Author
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Medina-Contreras O, Soldevila G, Patiño-Lopez G, Canche-Pool E, Valle-Rios R, and Ortiz-Navarrete V
- Subjects
- Aging, Animals, Mice, Mice, Inbred C57BL, Rats, Rats, Sprague-Dawley, Tissue Culture Techniques, Cell Differentiation, Immunoglobulins immunology, T-Lymphocytes cytology, T-Lymphocytes immunology, Thymus Gland cytology, Thymus Gland immunology
- Abstract
CRTAM was reported as a novel receptor expressed in activated NKT and CD8 T lymphocytes. However, we have recently shown that it is also expressed in several non-immune tissues. In opposition to what has been stated for lymphoid cells, CRTAM expression is constitutive in epithelia, suggesting a role in cell-cell interactions. Given the importance of cell interactions during T lymphocyte development, we evaluated CRTAM during T lymphocyte ontogeny. Here we show that CRTAM has an unexpected constitutive expression in adult thymocytes and, remarkably, it is sustained during all stages of thymocyte development. CRTAM expression is restricted to CD8 and all DN subpopulations, with a consistent pattern from E13.5 stage to adult mice. Blocking CRTAM interaction with CADM1 impairs thymus growth, uncovering a novel role in thymus development, with a consequent impact in thymocyte maturation. Thus, CRTAM interaction with CADM1 is involved in structural maintenance of the thymic lobes.
- Published
- 2010
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- View/download PDF
22. Characterization of CRTAM gene promoter: AP-1 transcription factor control its expression in human T CD8 lymphocytes.
- Author
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Valle-Rios R, Patiño-Lopez G, Medina-Contreras O, Canche-Pool E, Recillas-Targa F, Lopez-Bayghen E, Zlotnik A, and Ortiz-Navarrete V
- Subjects
- Anthracenes pharmacology, CD8-Positive T-Lymphocytes immunology, Cell Adhesion Molecule-1, Cell Adhesion Molecules, Cell Proliferation drug effects, Gene Expression Regulation drug effects, Humans, Immunoglobulins immunology, Immunoglobulins metabolism, Interferon-gamma immunology, Interferon-gamma metabolism, Interleukin-17 biosynthesis, Interleukin-17 immunology, Jurkat Cells, Lymphocyte Activation drug effects, Lymphocyte Activation physiology, MAP Kinase Kinase 4 antagonists & inhibitors, MAP Kinase Kinase 4 immunology, MAP Kinase Kinase 4 metabolism, Membrane Proteins immunology, Membrane Proteins metabolism, Signal Transduction drug effects, Signal Transduction physiology, Transcription Factor AP-1 immunology, Transcription, Genetic drug effects, Tumor Suppressor Proteins immunology, Tumor Suppressor Proteins metabolism, CD8-Positive T-Lymphocytes metabolism, Gene Expression Regulation physiology, Immunoglobulins biosynthesis, Response Elements physiology, Transcription Factor AP-1 metabolism, Transcription, Genetic physiology
- Abstract
Class-I MHC-restricted T-cell associated molecule (CRTAM) is a member of the Nectin-like adhesion molecule family. It is rapidly induced in NK, NKT and CD8(+) T cells. Interaction with its ligand Nectin-like 2 results in increased secretion of IFN-gamma by activated CD8(+) T lymphocytes. Through sequential bioinformatic analyses of the upstream region of the human CRTAM gene, we detected cis-elements potentially important for CRTAM gene transcription. Analyzing 2kb upstream from the ATG translation codon by mutation analysis in conjunction with luciferase reporter assays, electrophoretic mobility shify assay (EMSA) and supershift assays, we identified an AP-1 binding site, located at 1.4kb from the ATG translation codon of CRTAM gene as an essential element for CRTAM expression in activated but not resting human CD8(+) T cells. CRTAM expression was reduced in activated CD8(+) T cells treated with the JNK inhibitor SP600125, indicating that CRTAM expression is driven by the JNK-AP-1 signaling pathway. This study represents the first CRTAM gene promoter analysis in human T cells and indicates that AP-1 is a positive transcriptional regulator of this gene, a likely important finding because CRTAM has recently been shown to play a role in IFN-gamma and IL-17 production and T cell proliferation.
- Published
- 2009
- Full Text
- View/download PDF
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