36 results on '"Valerie A. Perez"'
Search Results
2. Tau local structure shields an amyloid-forming motif and controls aggregation propensity
- Author
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Dailu Chen, Kenneth W. Drombosky, Zhiqiang Hou, Levent Sari, Omar M. Kashmer, Bryan D. Ryder, Valerie A. Perez, DaNae R. Woodard, Milo M. Lin, Marc I. Diamond, and Lukasz A. Joachimiak
- Subjects
Science - Abstract
The biophysical mechanisms of how disease-associated tau mutations drive amyloid formation are not well understood. Here the authors use biophysical approaches, cell models and MD simulations and find that the intrinsically disordered repeat domain of tau encodes a metastable local structure and perturbations through mutations and proline isomerization cause an aggregation phenotype in vitro and in cells.
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- 2019
- Full Text
- View/download PDF
3. DnaJC7 specifically regulates tau seeding
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Valerie Ann Perez, David W Sanders, Ayde Mendoza-Oliva, Barbara Elena Stopschinski, Vishruth Mullapudi, Charles L White, Lukasz A Joachimiak, and Marc I Diamond
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tau ,chaperones ,seeding ,amyloid ,DnaJC7 ,J domain protein ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Neurodegenerative tauopathies are caused by accumulation of toxic tau protein assemblies. This appears to involve template-based seeding events, whereby tau monomer changes conformation and is recruited to a growing aggregate. Several large families of chaperone proteins, including Hsp70s and J domain proteins (JDPs), cooperate to regulate the folding of intracellular proteins such as tau, but the factors that coordinate this activity are not well known. The JDP DnaJC7 binds tau and reduces its intracellular aggregation. However, it is unknown whether this is specific to DnaJC7 or if other JDPs might be similarly involved. We used proteomics within a cell model to determine that DnaJC7 co-purified with insoluble tau and colocalized with intracellular aggregates. We individually knocked out every possible JDP and tested the effect on intracellular aggregation and seeding. DnaJC7 knockout decreased aggregate clearance and increased intracellular tau seeding. This depended on the ability of the J domain (JD) of DnaJC7 to stimulate Hsp70 ATPase activity, as JD mutations that block this interaction abrogated the protective activity. Disease-associated mutations in the JD and substrate binding site of DnaJC7 also abolished its protective activity. DnaJC7 thus specifically regulates tau aggregation in cooperation with Hsp70.
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- 2023
- Full Text
- View/download PDF
4. CD-MOFs for CO2 Capture and Separation: Current Research and Future Outlook
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Edgar Clyde R. Lopez and Jem Valerie D. Perez
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cyclodextrin metal–organic frameworks ,carbon dioxide capture ,adsorption ,separation ,Engineering machinery, tools, and implements ,TA213-215 - Abstract
Carbon dioxide (CO2) capture and separation constitute an important field of research as we seek to reduce the effects of climate change. Because of their porosity, resilient crystallinity, high adsorption capacity, and affinity for CO2, cyclodextrin-based metal-organic frameworks (CD-MOFs) have emerged as attractive materials for carbon capture. This paper gives an overview of CD-MOFs and their applications in CO2 capture and separation. Several studies have been conducted to synthesize and characterize CD-MOFs for CO2 capture. The causes of the high binding affinity of CO2 in CD-MOFs were discovered through mechanistic studies on CO2 adsorption. Furthermore, CD-MOF modifications have been carried out to improve the sorption capacity and selectivity of CO2 adsorption. Meanwhile, several researchers have reported using CD-MOFs for gaseous CO2 membrane separation. This paper also highlights the current gaps in CD-MOF research and future outlooks in carbon capture and separation using CD-MOFs.
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- 2023
- Full Text
- View/download PDF
5. Current Advances in the Synthesis of CD-MOFs and Their Water Stability
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Edgar Clyde R. Lopez and Jem Valerie D. Perez
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cyclodextrin metal-organic frameworks ,carbon dioxide capture ,adsorption ,separation ,Engineering machinery, tools, and implements ,TA213-215 - Abstract
Metal–organic frameworks (MOFs) are a class of material made up of metal ions or clusters and organic linkers. Cyclodextrin-based MOFs (CD-MOFs) are gaining popularity among MOFs due to their unique features, such as high porosity, permanent porosity, and biocompatibility. This paper focuses on recent advances in synthesizing CD-MOFs and their water stability. We highlight the difficulties involved in CD-MOF synthesis and the strategies explored to increase water stability. The advances in CD-MOF synthesis and characterization open new avenues for tailoring crystal growth processes and properties, with potential applications spanning areas such as catalysis, drug delivery, and environmental remediation. The combination of innovative synthesis techniques, systematic parameter exploration, and functionalization strategies heralds a promising era for crystal growth research and applications. Finally, we discuss the current research gaps and the future outlook of CD-MOF research. Overcoming obstacles in the synthesis and water stability of CD-MOFs is crucial for their practical applications.
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- 2023
- Full Text
- View/download PDF
6. Got meat? The mechanical signature of plant-based and animal meat
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St. Pierre, Skyler R., primary, Darwin, Ethan C, additional, Adil, Divya, additional, Aviles, Magaly C, additional, Date, Archer M, additional, Dunne, Reese, additional, Lall, Yanav, additional, Vallecillo, Maria Parra, additional, Medina, Valerie Ann Perez, additional, Linka, Kevin, additional, Levenston, Marc Elliot, additional, and Kuhl, Ellen, additional
- Published
- 2024
- Full Text
- View/download PDF
7. Effect of Ligand Concentration on the Stability and Copper (II) Sensing Performance of Humic Acid-Functionalized Silver Nanoparticles
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Edgar Clyde R. Lopez, Michael Angelo Zafra, Jon Nyner L. Gavan, Emil David A. Villena, and Jem Valerie D. Perez
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Mechanics of Materials ,Mechanical Engineering ,General Materials Science ,Condensed Matter Physics - Abstract
Detecting heavy metals in water is necessary to ensure its safety. However, current detection methods require costly equipment, making heavy metal monitoring challenging. Colorimetric detection of heavy metals using silver nanoparticles (AgNPs) relies on the optical spectra changes when it detects an analyte. We have previously shown that a colorimetric assay comprised of humic acid - functionalized AgNPs (HA-AgNPs) can selectively detect copper ions in water. Here, we investigated the effect of humic acid concentration on the stability of HA-AgNPs and their ability to detect copper. HA acts as a capping agent around the AgNPs, making them stable even for up to 48 days of storage in both ambient and cold storage environments. At critical HA concentrations of 5 mg L-1 and beyond, the changes in the optical properties of the HA-AgNPs are linearly dependent on Cu (II) concentration. Below this critical HA concentration, Cu (II) sensing is futile. The most stable HA-AgNPs is at HA = 25 mg L-1 based on zeta potential measurements, while the best assay for colorimetric copper (II) detection is at HA = 50 mg L-1, giving the lowest detection limit of 4.35 mg L-1 and R2 = 0.999 within a dynamic linear range of 0.00 to 1.25 mM Cu (II). We have shown that the ligand concentration is critical for achieving stable AgNP assays for heavy metal detection.
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- 2023
8. DnaJC7 specifically regulates tau seeding
- Author
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Valerie A. Perez, David W. Sanders, Ayde Mendoza-Oliva, Barbara E. Stopschinski, Vishruth Mullapudi, Charles L White, Lukasz A. Joachimiak, and Marc I. Diamond
- Subjects
Article - Abstract
Neurodegenerative tauopathies are caused by accumulation of toxic tau protein assemblies. This appears to involve template-based seeding events, whereby tau monomer changes conformation and is recruited to a growing aggregate. Several large families of chaperone proteins, including Hsp70s and J domain proteins (JDPs) cooperate to regulate the folding of intracellular proteins such as tau, but the factors that coordinate this activity are not well known. The JDP DnaJC7 binds tau and reduces its intracellular aggregation. However, it is unknown whether this is specific to DnaJC7 or if other JDPs might be similarly involved. We used proteomics within a cell model to determine that DnaJC7 co-purified with insoluble tau and colocalized with intracellular aggregates. We individually knocked out every possible JDP and tested the effect on intracellular aggregation and seeding. DnaJC7 knockout decreased aggregate clearance and increased intracellular tau seeding. This depended on the ability of the J domain (JD) of DnaJC7 to bind to Hsp70, as JD mutations that block binding to Hsp70 abrogated the protective activity. Disease-associated mutations in the JD and substrate binding site of DnaJC7 also abrogated its protective activity. DnaJC7 thus specifically regulates tau aggregation in cooperation with Hsp70.
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- 2023
9. Visible Light Photocatalytic Degradation of Methylene Blue Using Polypyrrole-Coated Molybdenum-Based Magnetic Photocatalyst
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Sharona Q. Barroga, Jem Valerie D. Perez, and Debora F. Rodrigues
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Mechanics of Materials ,Mechanical Engineering ,General Materials Science ,Condensed Matter Physics - Abstract
In this study, Ppy@MoO3@Fe3O4 photocatalyst was used to degrade methylene blue (MB) under visible light irradiation. The optimum catalyst loading, initial MB dye concentration, and solution pH was found to be 500 ppm, 40 ppm, and pH 5, respectively, and resulted to 94.1% MB dye degradation within 90 min irradiation. The mineralization of MB obtained 93% TOC removal. Pseudo-first order kinetic model governed the degradation of MB having a rate constant of 0.027 min-1. Furthermore, it was demonstrated that h+ and O2 species played a critical role in the visible light photocatalytic degradation of MB. The Ppy@MoO3@Fe3O4 photocatalyst also showed better photocatalytic performance on MB dye degradation compared to MoO3@Fe3O4 and controls. Finally, the Ppy@MoO3@Fe3O4 photocatalyst exhibited consistently high performance even after 4 cycles, proving that the as-prepared nanomaterial can be considered as a promising photocatalyst with good photocatalytic activity, stability, and reusability.
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- 2022
10. In Situ Polymerization of Polypyrrole and Polyaniline on the Surface of Magnetic Molybdenum Trioxide Nanoparticles: Implications for Water Treatment
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Sofia K. Fanourakis, Sharona Q. Barroga, Lilin He, Jem Valerie D. Perez, and Debora F. Rodrigues
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Conductive polymer ,Materials science ,engineering.material ,Polypyrrole ,Molybdenum trioxide ,chemistry.chemical_compound ,Polymerization ,Chemical engineering ,chemistry ,Coating ,Polyaniline ,engineering ,General Materials Science ,In situ polymerization ,Dissolution - Abstract
Photocatalyst dissolution greatly diminishes the usability of photocatalysts in water treatments. Coating conductive polymers on the surface of photocatalysts can reduce dissolution without comprom...
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- 2021
11. Rapid Removal of Methylene Blue in Water Using Polymer-Based Biochar Nanocomposite-Coated Filters
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Edgar Clyde R. Lopez, Nathaniel M. Saporsantos, Richard C. Aquino, Jem Valerie D. Perez, William Ven R. Magbalon, and Miguel Lawrence Keith S.J. Celebre
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chemistry.chemical_classification ,chemistry.chemical_compound ,Nanocomposite ,Materials science ,Adsorption ,chemistry ,Chemical engineering ,Biochar ,General Materials Science ,Polymer ,Condensed Matter Physics ,Atomic and Molecular Physics, and Optics ,Methylene blue - Abstract
In this study, the effectiveness of novel nanocomposite-coated filters consisting of biochar (BC) functionalized with sodium alginate (SA) and poly (vinyl alcohol) (PVA) was investigated for methylene (MB) blue removal. The filters were fabricated via a dip-coating method and SEM and FTIR spectroscopy confirmed the successful coating of the filters. The impact of the nanocomposite formulation and the operating parameters (initial pH and MB concentration) on the performance of the coated filters were studied. A nanocomposite composition consisting of 1.0 wt.% SA, 2.0 wt.% PVA, and 1000 ppm BC were found to be optimum, reaching as high as 96.51% MB removal. The fabricated filters were determined to be robust over a wide range of pH and initial MB concentrations. The Sips isotherm model proved to be the best-fit model for MB adsorption, where chemisorption dominates at low MB concentrations, while physisorption dominates at high MB concentrations. The filters have a maximum sorption capacity of 54.5198 mg g-1 and showed good reusability. Overall, our synthesized SA/PVA/BC-coated filters can be used to effectively remove dyes in wastewater over a wide range of operating conditions.
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- 2021
12. Fe/S Co-Doped Titanium Dioxide Nanotubes: Optimization of the Photoelectrocatalytic Degradation Kinetics of Phenol Red
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Fiona Fritz G. Camiguing, Edgar Clyde R. Lopez, Nicole Elyse B. Saputil, Lance A. Loza, Jem Valerie D. Perez, and Marlon Jr. L. Mopon
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Phenol red ,Materials science ,Degradation kinetics ,Mechanical Engineering ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,Chemical engineering ,chemistry ,Mechanics of Materials ,Titanium dioxide ,General Materials Science ,Response surface methodology ,0210 nano-technology ,Co doped - Abstract
Photoelectrocatalysis has emerged as a promising technology to degrade recalcitrant pollutants such as textile dyes in wastewater completely. Titanium dioxide is typically used as a photocatalyst, but its wide bandgap constrains its use to the use of ultraviolet light. To extend its use to the visible-light region, we doped titanium dioxide nanotubes with iron and sulfur. We used them as a photoelectrode for the photoelectrocatalytic degradation of a model pollutant – phenol red. Response surface methodology using a Box-Behnken design of experiments was used to investigate the effects of initial dye concentration, applied potential, and dopant loading on phenol red degradation kinetics. Statistical analysis showed that our reduced cubic model adequately correlates these parameters. The fastest dye degradation rate was achieved at the optimized conditions: initial phenol red concentration = 5.0326 mg L-1, applied voltage = 29.9686 V, and dopant loading = 1.2244 wt.%. Complete degradation of phenol red may be achieved after 11.77 hours of treatment under the optimized conditions in a batch reactor. Our model's robustness enables it to be used for process modeling and a basis for designing scaled-up photoelectrocatalytic reactors.
- Published
- 2021
13. Fixed-Bed Adsorption Column Studies for the Removal of Methyl Orange from Water Using Polyethyleneimine-Graphene Oxide Polymer Nanocomposite Beads
- Author
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Camille Margaret S. Alvarillo, Joshua L. Chua, Jirah Emmanuel T. Nolasco, Ysabel Marie C. Gonzales, and Jem Valerie D. Perez
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Materials science ,Nanocomposite ,Polymer nanocomposite ,Graphene ,Mechanical Engineering ,Oxide ,02 engineering and technology ,010501 environmental sciences ,021001 nanoscience & nanotechnology ,01 natural sciences ,law.invention ,Volumetric flow rate ,Chitosan ,chemistry.chemical_compound ,Adsorption ,chemistry ,Chemical engineering ,Mechanics of Materials ,law ,Methyl orange ,General Materials Science ,0210 nano-technology ,0105 earth and related environmental sciences - Abstract
Continuous fixed-bed column studies were performed using nanocomposite beads made up of chitosan, polyethyleneimine, and graphene oxide as adsorbents for the removal of methyl orange (MO) in water. The effects of different operating parameters such as initial MO concentration (5, 10, and 15 ppm), bed height (10, 17.5, and 25 cm), and flow rate (27, 43, and 58 mL/min) were investigated using an upward-flow fixed-bed column set-up. The breakthrough curves generated were fitted with Adams-Bohart, Thomas, Yoon-Nelson, and Yan et al. models. The results showed that Yan et al. model agreed best with the breakthrough curves having an R2 as high as 0.9917. Lastly, design parameters for a large-scale adsorption column were determined via scale-up approach using the parameters obtained from column runs.
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- 2021
14. Influence of Volume on the Nucleation of Model Organic Molecular Crystals through an Induction Time Approach
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Jem Valerie D. Perez, Allan S. Myerson, Gerard Capellades, Isaac Jerome C. Dela Cruz, and Bryan G. Alamani
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Supersaturation ,Materials science ,010405 organic chemistry ,digestive, oral, and skin physiology ,Nucleation ,Thermodynamics ,Induction time ,General Chemistry ,010402 general chemistry ,Condensed Matter Physics ,01 natural sciences ,0104 chemical sciences ,Exponential function ,Sample volume ,Volume (thermodynamics) ,Glycine ,Probability distribution ,General Materials Science - Abstract
Analysis of the probability distribution of induction times for acetaminophen and glycine supersaturated solutions showed that reduction in sample volume results in an exponential increase in induc...
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- 2021
15. 'Stagomé' Lattice: The Missing Member of the Star-Kagomé Family
- Author
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Maurice Sorolla, Jem Valerie D. Perez, Allan J. Jacobson, and Xiqu Wang
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Physics ,Condensed matter physics ,General Chemical Engineering ,02 engineering and technology ,General Chemistry ,Star (graph theory) ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Lattice (module) ,Materials Chemistry ,Condensed Matter::Strongly Correlated Electrons ,0210 nano-technology ,Topology (chemistry) - Abstract
Transition metal-based compounds with new two-dimensional, triangle-based topology are rare but are of considerable interest because of their unusual magnetic properties. Here we report the synthes...
- Published
- 2021
16. Response Surface Optimization of Graphene Oxide-Reinforced Dual-Crosslinked Alginate/Poly(Vinyl Alcohol) Hydrogel Beads for Methylene Blue Adsorption
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Maria Lourdes P. Dalida, Miguel Lawrence Keith S.J. Celebre, and Jem Valerie D. Perez
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Vinyl alcohol ,Materials science ,Graphene ,Mechanical Engineering ,Oxide ,02 engineering and technology ,010501 environmental sciences ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,law.invention ,chemistry.chemical_compound ,Adsorption ,chemistry ,Chemical engineering ,Mechanics of Materials ,law ,General Materials Science ,Glutaraldehyde ,0210 nano-technology ,Methylene blue ,0105 earth and related environmental sciences - Abstract
Response surface methodology (RSM) was used to determine the optimal blend of alginate (ALG), poly (vinyl alcohol) (PVA) and graphene oxide (GO), as well as glutaraldehyde (GA) crosslinking solution concentration for the synthesis of dual-crosslinked ALG/PVA/GO nanocomposite hydrogel adsorbent beads for methylene blue (MB) removal. Statistical analyses show that PVA concentration contributes the largest effect to the adsorption capacity response, attributed to improved accessibility of MB molecules to adsorption sites. The optimal blend was determined to be 3% polymer with 50% PVA, 383.8384 ppm GO, crosslinked in 1% CaCl2 and 5% GA. These results were validated, and the experimental value of the adsorption capacity deviated by only 1.702% from the RSM model prediction, suggesting good model predictability. Adsorption isotherm models were tested to provide a description of the adsorption process. The Sips isotherm model, suggesting monolayer adsorption over heterogeneous surface with action of cooperative adsorbate-adsorbate interactions, was the best fit to the experimental equilibrium data, with an R2 of 0.9782. Furthermore, the ALG/PVA/GO beads demonstrated a maximum monolayer adsorption capacity of 1081.62 mg/g, showing superior performance compared to known biosorbents of MB.
- Published
- 2020
17. Iron/Sulfur Co-Doped Titanium Dioxide Nanotubes: Optimization of the Photoelectrocatalytic Degradation of Phenol Red under Visible Light
- Author
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Fiona Fritz G. Camiguing, Edgar Clyde R. Lopez, Nicole Elyse B. Saputil, Lance A. Loza, Marlon Jr. L. Mopon, and Jem Valerie D. Perez
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Phenol red ,Materials science ,Mechanical Engineering ,chemistry.chemical_element ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Photochemistry ,01 natural sciences ,Sulfur ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Mechanics of Materials ,Titanium dioxide ,Degradation (geology) ,General Materials Science ,0210 nano-technology ,Co doped ,Visible spectrum - Abstract
Photoelectrocatalysis is a rapidly developing technology for degrading recalcitrant organic compounds in wastewater due to its ability to overcome electron-hole recombination. Herein, we synthesized Fe/S co-doped TiO2 nanotubes through an in-situ anodization technique. We developed a simple reduced quadratic model based on response surface modeling which can be used to adequately correlate the operating parameters with the photoelectrocatalytic performance of Fe/S-TiNTs in degrading phenol red. Predicted maximum dye degradation of 54.78% was achieved by the generated model using the optimized parameters: initial phenol red concentration = 5.22 mg L-1, applied voltage = 27.4 V, and dopant loading = 2.97 wt.%. Upon validation, experimental maximum phenol degradation of 53.24% was obtained, which agrees well with the predicted value within statistical significance. Overall, our model can be potentially used for process optimization within the design space studied.
- Published
- 2020
18. Photoelectrocatalytic Degradation of C.I. Basic Blue 9 under UV Light Using Silver-Doped Titanium Dioxide Nanotubes
- Author
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Rio Ysabel A. Cañal, Kristoffer Francis P. Boado, Jem Valerie D. Perez, Vince Aron F. Cleofe, and Edgar Clyde R. Lopez
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Materials science ,010405 organic chemistry ,Anodizing ,Mechanical Engineering ,Doping ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,Chemical engineering ,chemistry ,Mechanics of Materials ,Titanium dioxide ,Degradation (geology) ,General Materials Science ,0210 nano-technology - Abstract
Titanium dioxide is a widely-investigated semiconductor photocatalyst due to its wide availability and low cost. Although it has been successfully used in the photocatalytic treatment of various organics in wastewater, it remains a challenge to modify its structure to achieve enhanced catalytic properties at a wider light spectrum. Doping with transition metals was seen to narrow its optical band gap yet synthesis routes have been largely limited to the use of high-end equipment. Herein we demonstrate the use of a simpler one-pot approach to synthesize nanoporous arrays of silver-doped titanium dioxide nanotubes (Ag-TiNTs) by double anodization of titanium sheets. The synthesized Ag-TiNTs have an average inner diameter of 58.68 nm and a wall thickness of 16.46 nm. ATR-FTIR spectroscopy revealed its characteristic peaks attributed to O-Ti-O bonds. Silver doping increased the lattice volume and crystallite size of anatase with a corresponding decrease in the degree of crystallinity due to the introduction of impurity Ag atoms in its tetragonal structure. Silver was homogeneously distributed across the nanotube surface at an average loading of 1.41 at. %. The synthesized Ag-TiNTs were shown to have a superior photoelectrocatalytic activity in degrading C.I. Basic Blue 9 under UV illumination with a pseudo-first-order kinetic rate of 1.0253 x 10-2 min-1. Most importantly, the Ag-TiNTs are photoelectrocatalytically-active even at a low Ag loading.
- Published
- 2020
19. Humic Acid Functionalized - Silver Nanoparticles as Nanosensor for Colorimetric Detection of Copper (II) Ions in Aqueous Solutions
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Jem Valerie D. Perez, Jon Nyner L. Gavan, Michael Angelo Zafra, Edgar Clyde R. Lopez, Francis Eric P. Almaquer, and Emil David A. Villena
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chemistry.chemical_classification ,Aqueous solution ,Chemistry ,Mechanical Engineering ,chemistry.chemical_element ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Copper ,Silver nanoparticle ,0104 chemical sciences ,Ion ,Mechanics of Materials ,Nanosensor ,Humic acid ,General Materials Science ,0210 nano-technology ,Nuclear chemistry - Abstract
Humic acid - functionalized silver nanoparticles (HA-AgNPs) were successfully synthesized and used to detect Cu (II) ions in aqueous solutions. The HA-AgNPs was shown to have an average hydrodynamic diameter of 101.4 nm and a polydispersity index of 0.447. The absorbance spectra of HA-AgNPs showed the characteristic local surface plasmon resonance (LSPR) peak of AgNPs at 408.3 nm. Addition of Cu (II) in the HA-AgNPs led to their agglomeration as evidenced by the change in their surface morphology and their corresponding optical absorbance spectra. The synthesized HA-AgNPs showed a strong linear response for Cu (II) concentrations in the range of 0.00 – 1.25 mM with a limit of detection (LoD) of 4.4428 ± 0.1091 mg L-1, a limit of quantification (LoQ) of 14.8094 ± 0.3636 mg L-1, and a limit of blank (LoB) of 0.1214 ± 0.0065 mg L-1. Statistical analysis showed that this calibration curve could be used to quantify Cu (II) concentrations within a 95% confidence level. Furthermore, HA-AgNPs was found to be selective for Cu (II) detection based on the selectivity study against common metal ions found in drinking water. This shows that the synthesized HA-AgNPs can be used as an environment-friendly colorimetric nanosensor for rapid and point-of-need quantification of Cu (II) ions in aqueous media.
- Published
- 2020
20. Dual fates of exogenous tau seeds: lysosomal clearance vs. cytoplasmic amplification
- Author
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Sourav Kolay, Anthony R. Vega, Dana A. Dodd, Valerie A. Perez, Omar M. Kashmer, Charles L. White, and Marc I. Diamond
- Abstract
Tau assembly propagation from the extracellular to intracellular space of a cell may underlie neurodegenerative tauopathies. The first step involves tau binding to heparan sulfate proteoglycans on the cell surface, followed by macropinocytosis. Pathological tau assemblies are thought to exit the vesicular compartment as “seeds” for replication in the cytoplasm. Tau uptake is highly efficient, but only ∼1-10% of cells that take up aggregates exhibit seeding. To investigate the basis for this observation, we used fluorescently tagged full-length (FL) tau fibrils added to native U2OS cells, and “biosensor” cells expressing FL tau or repeat domain fused to mClover (Clo). FL tau-Clo bound tubulin, but seeds triggered its aggregation in multiple locations simultaneously in the cytoplasm, generally independent of visible exogenous aggregates. Most exogenous tau trafficked to the lysosome, but imaging revealed a small percentage that slowly and steadily accumulated in the cytosol. Intracellular expression of Gal3-mRuby, which binds intravesicular galactosides and forms puncta upon vesicle rupture, revealed no evidence of vesicle damage following tau exposure. In fact, most seeded cells had no evidence of lysosome rupture. However, live cell imaging indicated that cells with pre-existing Gal3-positive puncta exhibited seeding at a slightly higher rate than the general population, indicating a potential role for vesicle instability as a predisposing factor. Clearance of tau seeds occurred rapidly in both vesicular and cytosolic fractions. Bafilomycin inhibited vesicular clearance, whereas MG132 inhibited cytosolic clearance. Tau seeds that enter the cell thus have at least two fates: lysosomal clearance that degrades most tau, and entry into the cytosol, where seeds replicate, and are cleared by the proteasome.
- Published
- 2022
21. The dual fates of exogenous tau seeds: Lysosomal clearance versus cytoplasmic amplification
- Author
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Sourav Kolay, Anthony R. Vega, Dana A. Dodd, Valerie A. Perez, Omar M. Kashmer, Charles L. White, and Marc I. Diamond
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Cytosol ,Tauopathies ,Alzheimer Disease ,Humans ,tau Proteins ,Cell Biology ,Lysosomes ,Molecular Biology ,Biochemistry ,Heparan Sulfate Proteoglycans - Abstract
Tau assembly movement from the extracellular to intracellular space may underlie transcellular propagation of neurodegenerative tauopathies. This begins with tau binding to cell surface heparan sulfate proteoglycans, which triggers macropinocytosis. Pathological tau assemblies are proposed then to exit the vesicular compartment as "seeds" for replication in the cytoplasm. Tau uptake is highly efficient, but only ∼1 to 10% of cells that endocytose aggregates exhibit seeding. Consequently, we studied fluorescently tagged full-length (FL) tau fibrils added to native U2OS cells or "biosensor" cells expressing FL tau or repeat domain. FL tau fibrils bound tubulin. Seeds triggered its aggregation in multiple locations simultaneously in the cytoplasm, generally independent of visible exogenous aggregates. Most exogenous tau trafficked to the lysosome, but fluorescence imaging revealed a small percentage that steadily accumulated in the cytosol. Intracellular expression of Gal3-mRuby, which binds intravesicular galactosides and forms puncta upon vesicle rupture, revealed no evidence of vesicle damage following tau exposure, and most seeded cells had no evidence of endolysosome rupture. However, live-cell imaging indicated that cells with pre-existing Gal3-positive puncta were seeded at a slightly higher rate than the general population, suggesting a potential predisposing role for vesicle instability. Clearance of tau seeds occurred rapidly in both vesicular and cytosolic fractions. The lysosome/autophagy inhibitor bafilomycin inhibited vesicular clearance, whereas the proteasome inhibitor MG132 inhibited cytosolic clearance. Tau seeds that enter the cell thus have at least two fates: lysosomal clearance that degrades most tau, and entry into the cytosol, where seeds amplify, and are cleared by the proteasome.
- Published
- 2021
22. Engineering instructional faculty perceptions of students' background at Hispanic Serving Institutions
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Valerie Bracho Perez, Henry Salgado, Alexandra Coso Strong, and Meagan R. Kendall
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- 2021
23. DnaJC7 binds natively folded structural elements in tau to inhibit amyloid formation
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Pawel M. Wydorski, Hilda Mirbaha, Omar M. Kashmer, Bryan D. Ryder, Lukasz A. Joachimiak, Valerie A. Perez, Aydé Mendoza-Oliva, and Zhiqiang Hou
- Subjects
Models, Molecular ,Protein Conformation, alpha-Helical ,Amyloid ,Protein Folding ,Science ,Mutant ,Gene Expression ,General Physics and Astronomy ,tau Proteins ,Plasma protein binding ,Article ,General Biochemistry, Genetics and Molecular Biology ,Substrate Specificity ,Mice ,Protein Aggregates ,Chaperones ,mental disorders ,Animals ,Humans ,Protein Interaction Domains and Motifs ,Cloning, Molecular ,Heat-Shock Proteins ,Intrinsically disordered proteins ,Binding Sites ,Multidisciplinary ,Chemistry ,Brain ,General Chemistry ,Recombinant Proteins ,In vitro ,Disease Models, Animal ,HEK293 Cells ,Tauopathies ,Mutation ,Chaperone binding ,Biophysics ,Thermodynamics ,Protein Conformation, beta-Strand ,Protein aggregation ,Molecular Chaperones ,Protein Binding - Abstract
Molecular chaperones, including Hsp70/J-domain protein (JDP) families, play central roles in binding substrates to prevent their aggregation. How JDPs select different conformations of substrates remains poorly understood. Here, we report an interaction between the JDP DnaJC7 and tau that efficiently suppresses tau aggregation in vitro and in cells. DnaJC7 binds preferentially to natively folded wild-type tau, but disease-associated mutants in tau reduce chaperone binding affinity. We identify that DnaJC7 uses a single TPR domain to recognize a β-turn structural element in tau that contains the 275VQIINK280 amyloid motif. Wild-type tau, but not mutant, β-turn structural elements can block full-length tau binding to DnaJC7. These data suggest DnaJC7 preferentially binds and stabilizes natively folded conformations of tau to prevent tau conversion into amyloids. Our work identifies a novel mechanism of tau aggregation regulation that can be exploited as both a diagnostic and a therapeutic intervention., Protein binding by the Hsp70/J-domain protein (JDP) chaperones prevents aggregation of the client protein. Here, the authors show that DnaJC7 binds preferentially to natively folded wild-type tau, via a β-turn element in tau that contains the known amyloid motif, while aggregation-prone tau mutants are recognized with reduced affinity.
- Published
- 2021
24. Mechanical Engineering Students’ Perceptions of Design Skills Throughout a Senior Design Course Sequence
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Valerie Bracho Perez, Anilegna Nuñez Abreu, Ameen Khan, Luis Guardia, Indhira Hasbún, and Alexandra Strong
- Published
- 2021
25. Graphene Oxide Nanocomposite Hydrogel Beads for Removal of Selenium in Contaminated Water
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Pasan C. Bandara, Konrad J. Krakowiak, Debora F. Rodrigues, Raj Gopal Nannapaneni, Enrico T. Nadres, and Jem Valerie D. Perez
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Nanocomposite ,Polymers and Plastics ,Graphene ,Process Chemistry and Technology ,Organic Chemistry ,Oxide ,chemistry.chemical_element ,law.invention ,Contaminated water ,chemistry.chemical_compound ,Increasing risk ,chemistry ,Human exposure ,law ,Environmental chemistry ,Selenium - Abstract
Selenium in water is becoming of increasing risk to human exposure because only recently serious health effects have been associated with their presence in water resources. The present study invest...
- Published
- 2019
26. Kinetics and Isotherm Studies of Methyl Orange Adsorption Using Polyethyleneimine-Graphene Oxide Polymer Nanocomposite Beads
- Author
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Karl Michael V. Edquila, Joel Ian C. Espita, Jirah Emmanuel T. Nolasco, Jem Valerie D. Perez, and Elaine Nicole O. Cañeba
- Subjects
Polymer nanocomposite ,Graphene ,Mechanical Engineering ,Kinetics ,Oxide ,02 engineering and technology ,010501 environmental sciences ,021001 nanoscience & nanotechnology ,01 natural sciences ,law.invention ,Chitosan ,chemistry.chemical_compound ,Adsorption ,chemistry ,Chemical engineering ,Mechanics of Materials ,law ,Methyl orange ,General Materials Science ,0210 nano-technology ,0105 earth and related environmental sciences - Abstract
Nanocomposite beads containing 2% chitosan (CS), 2% polyethyleneimine (PEI), and 1,500 ppm graphene oxide (GO) were synthesized for the removal of methyl orange (MO) from water. Characterization of the CS-PEI-GO beads using Fourier transform infrared spectroscopy (FTIR) and scanning electron microscopy (SEM) showed favorable adsorbent properties as given by the presence of numerous surface functional groups and a porous structure. Effects of different parameters such as pH, contact time, and initial concentration on the percentage removal of MO and adsorption capacity of the beads were investigated by performing batch adsorption experiments. MO removal of more than 85% was achieved by the beads across a wide pH range. Kinetic studies were performed and a pseudo-second order kinetic equation with R2 of 0.9999 was obtained. Furthermore, adsorption equilibrium data for MO were best described by the Toth isotherm model (R2 = 0.9644), suggesting multilayer adsorption on heterogeneous adsorption sites with a maximum adsorption capacity of 421.51 mg/g. Finally, FTIR and SEM analyses after adsorption confirmed the presence of MO on the surface of the beads and revealed an intact and stable structure. Overall, the excellent adsorption capability and multi-functionality demonstrated in this study show great potential of the synthesized material for wastewater treatment applications.
- Published
- 2019
27. Highly-Organized One-Dimensional Copper-Doped Titanium Dioxide Nanotubes for Photoelectrocatalytic Degradation of Acid Orange 52
- Author
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Kristoffer Francis P. Boado, Jem Valerie D. Perez, Vince Aron F. Cleofe, Edgar Clyde R. Lopez, and Rio Ysabel A. Cañal
- Subjects
Materials science ,Anodizing ,Mechanical Engineering ,Doping ,chemistry.chemical_element ,02 engineering and technology ,Orange (colour) ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Copper ,0104 chemical sciences ,chemistry.chemical_compound ,Chemical engineering ,chemistry ,Mechanics of Materials ,Titanium dioxide ,General Materials Science ,0210 nano-technology - Abstract
Highly-organized one-dimensional arrays of copper-doped titanium dioxide nanotubes (Cu-TiNTs) were synthesized in a one-pot approach by double anodization of titanium sheets. Field-emission scanning electron microscopy showed that Cu-TiNTs have an average inner diameter of 52.13 nm, a wall thickness of 14.28 nm, and a tube length of 0.6401 μm. Fourier-transform infrared spectroscopy confirmed the presence of characteristic O-Ti-O bond of TiO2. X-ray fluorescence spectroscopy confirmed copper-doping with an average dopant loading of 0.0248%. Even at this low dopant loading, Cu-TiNTs were shown to be photo-active in degrading Acid Orange 52 (AO 52) under UV light illumination. The kinetic profiles of AO 52 photoelectrochemical degradation were best described by the pseudo-first-order kinetic model (R2 ≥ 0.991) with kinetic constants 9.42 x 10-3 min-1 for Cu-TiNTs as compared to 6.04 x 10-3 min-1 for pristine TiNTs. Overall, doping pristine TiNTs with Cu was shown to enhance its photoelectrocatalytic properties in degrading textile dyes such as AO 52.
- Published
- 2019
28. Synthesis of Silver-Doped Titanium Dioxide Nanotubes by Single-Step Anodization for Enhanced Photodegradation of Acid Orange 52
- Author
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Edgar Clyde R. Lopez, Jem Valerie D. Perez, and Joey D. Ocon
- Subjects
Materials science ,Anodizing ,Mechanical Engineering ,Doping ,Single step ,02 engineering and technology ,Orange (colour) ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Chemical engineering ,Mechanics of Materials ,Titanium dioxide ,General Materials Science ,0210 nano-technology ,Photodegradation - Abstract
Silver-doped TiO2 nanotubes (Ag-TiNTs) were synthesized in a top-down approach by single-step anodization of titanium sheets. The highly-ordered array of Ag-TiNTs was confirmed by scanning electron microscopy with an average inner diameter of 41.28 nm and a wall thickness of 35.38 nm. Infrared spectroscopy confirmed the presence of O-Ti-O bonds. Analysis of the X-ray powder diffraction profiles showed the characteristic peaks for anatase and titanium for both pristine TiNTs and Ag-TiNTs. Ag-doping caused no observed changes in the crystalline structure of pristine TiNTs. High-definition X-ray fluorescence spectroscopy revealed that the synthesized Ag-TiNTs have 0.05 wt% Ag-loading. Even at low Ag-loading, the Ag-TiNTs were shown to be photo-active, achieving 10.13% degradation of Acid Orange 52 under UV illumination after 120 min.
- Published
- 2019
29. Effect of Modified Natural Rubber on Morphology, Chemical Structure, and Crystallinity of Electrospun Polyvinylidene Difluoride Nanofibers
- Author
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Jem Valerie D. Perez, Jean Raynell S. Bello, and Bryan B. Pajarito
- Subjects
Materials science ,Morphology (linguistics) ,Mechanical Engineering ,Chemical structure ,Polyvinylidene difluoride ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Electrospinning ,0104 chemical sciences ,Crystallinity ,Natural rubber ,Chemical engineering ,Mechanics of Materials ,visual_art ,Nanofiber ,visual_art.visual_art_medium ,General Materials Science ,0210 nano-technology - Abstract
Natural rubber latex was chemically modified by enzymatic deproteinization, degradation, and epoxidation to produce deproteinized liquid epoxidized natural rubber (DP-LENR). Polyvinylidene difluoride (PVDF) was blended with DP-LENR and then electrospun to produce nanofibers. Scanning electron microscopy shows reduction in the fiber diameter and beading formation with increasing concentration of DP-LENR. Smooth surface of nanofibers suggests miscibility and chemical compatibility of PVDF with low concentration of DP-LENR. Infrared spectroscopy and X-ray diffraction analysis show the addition of DP-LENR has no effect on chemical structure and crystallinity of electrospun PVDF.
- Published
- 2019
30. Exposure-Dependent Antimicrobial Activity and Oxidative Properties of Polymer-Based Graphene Oxide Nanocomposites
- Author
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Joy Vanessa D. Perez, Debora F. Rodrigues, Maria Lourdes P. Dalida, Raniv D. Rojo, and Jem Valerie D. Perez
- Subjects
chemistry.chemical_classification ,Reactive oxygen species ,Nanocomposite ,Materials science ,Graphene ,Mechanical Engineering ,Oxide ,Oxidative phosphorylation ,Polymer ,Condensed Matter Physics ,Antimicrobial ,law.invention ,Chitosan ,chemistry.chemical_compound ,chemistry ,Chemical engineering ,Mechanics of Materials ,law ,General Materials Science - Abstract
Bacterial proliferation and biofilm formation has emerged as a significant concern in the long-term use of industrial apparatus. This study describes the antimicrobial properties of a novel chitosan-polyethyleneimine-graphene oxide (CS-PEI-GO) nanocomposite against E. coli. The nanocomposite is a stable material with minimal dispersibility in storage water after more than 7 days. The antimicrobial activity is contact-time-dependent, with direct contact (92% bacterial inactivation after 3h exposure) having superior results compared with dynamic contact (~50% inactivation after 3h exposure). In addition, the incorporation of GO also translated to enhanced production of ROS—oxidation of GSH was higher in CS-PEI-GO (31.78%) as compared to CS-PEI alone (5.69%). This may be attributed to previously proposed mechanisms of mechanical membrane damage and reactive oxygen species production that may be more pronounced with prolonged contact. This may be due to the positively charged chitosan and the negatively charged cell membrane facilitating the coating of cells that could allow the oxygen-containing functional groups of GO to induce oxidative stress and lead to cell death.
- Published
- 2019
31. Use of polyaniline coating on magnetic MoO3 and its effects on material stability and visible-light photocatalysis of tetracycline
- Author
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Sofia K. Fanourakis, Sharona Q. Barroga, Riya A. Mathew, Janire Peña-Bahamonde, Stacey M. Louie, Jem Valerie D. Perez, and Debora F. Rodrigues
- Subjects
Process Chemistry and Technology ,Chemical Engineering (miscellaneous) ,Pollution ,Waste Management and Disposal - Published
- 2022
32. Improved Sensitivity in Ultrasound Molecular Imaging With Coherence-Based Beamforming
- Author
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Valerie A. Perez, Lotfi Abou-Elkacem, Sayan Mullick Chowdhury, Jeremy J. Dahl, Juergen K. Willmann, and Dongwoon Hyun
- Subjects
Beamforming ,Materials science ,Swine ,Image processing ,Perfusion scanning ,Signal-To-Noise Ratio ,Models, Biological ,Sensitivity and Specificity ,01 natural sciences ,Article ,Imaging phantom ,030218 nuclear medicine & medical imaging ,Mice ,03 medical and health sciences ,0302 clinical medicine ,In vivo ,0103 physical sciences ,Image Processing, Computer-Assisted ,Animals ,Humans ,Electrical and Electronic Engineering ,010301 acoustics ,Ultrasonography ,Radiological and Ultrasound Technology ,Phantoms, Imaging ,Neoplasms, Experimental ,Vascular Endothelial Growth Factor Receptor-2 ,Molecular Imaging ,Computer Science Applications ,Transducer ,Heterografts ,Artifacts ,Software ,Preclinical imaging ,Coherence (physics) ,Biomedical engineering - Abstract
Ultrasound molecular imaging (USMI) is accomplished by detecting microbubble (MB) contrast agents that have bound to specific biomarkers, and can be used for a variety of imaging applications, such as the early detection of cancer. USMI has been widely utilized in preclinical imaging in mice; however, USMI in humans can be challenging because of the low concentration of bound MBs and the signal degradation caused by the presence of heterogenous soft tissue between the transducer and the lesion. Short-lag spatial coherence (SLSC) beamforming has been proposed as a robust technique that is less affected by poor signal quality than standard delay-and-sum (DAS) beamforming. In this paper, USMI performance was assessed using contrast-enhanced ultrasound imaging combined with DAS (conventional CEUS) and with SLSC (SLSC-CEUS). Each method was characterized by flow channel phantom experiments. In a USMI-mimicking phantom, SLSC-CEUS was found to be more robust to high levels of additive thermal noise than DAS, with a 6dB SNR improvement when the thermal noise level was +6dB or higher. However, SLSC-CEUS was also found to be insensitive to increases in MB concentration, making it a poor choice for perfusion imaging. USMI performance was also measured in vivo using VEGFR2-targeted MBs in mice with subcutaneous human hepatocellular carcinoma tumors, with clinical imaging conditions mimicked using a porcine tissue layer between the tumor and the transducer. SLSC-CEUS improved the SNR in each of ten tumors by an average of 41%, corresponding to 3.0dB SNR. These results indicate that the SLSC beamformer is well-suited for USMI applications because of its high sensitivity and robust properties under challenging imaging conditions.
- Published
- 2018
33. Multimodal assessment of SERS nanoparticle biodistribution post ingestion reveals new potential for clinical translation of Raman imaging
- Author
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Cristina Zavaleta, Valerie A. Perez, Orly Liba, Michelle L. James, Zhen Qiu, Elliott D. SoRelle, Ohad Ilovich, Jos L. Campbell, Adam de la Zerda, and Carmel T. Chan
- Subjects
Biodistribution ,Pathology ,medicine.medical_specialty ,Materials science ,Biophysics ,Raman imaging ,Mice, Nude ,Nanoparticle ,Bioengineering ,02 engineering and technology ,Spectrum Analysis, Raman ,010402 general chemistry ,Multimodal Imaging ,01 natural sciences ,Article ,Biomaterials ,Mice ,symbols.namesake ,Oral administration ,medicine ,Animals ,Ingestion ,Distribution (pharmacology) ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Systemic toxicity ,Mechanics of Materials ,Positron-Emission Tomography ,Ceramics and Composites ,symbols ,Nanoparticles ,Female ,0210 nano-technology ,Raman spectroscopy ,Biomedical engineering - Abstract
Despite extensive research and development, new nano-based diagnostic contrast agents have faced major barriers in gaining regulatory approval due to their potential systemic toxicity and prolonged retention in vital organs. Here we use five independent biodistribution techniques to demonstrate that oral ingestion of one such agent, gold-silica Raman nanoparticles, results in complete clearance with no systemic toxicity in living mice. The oral delivery mimics topical administration to the oral cavity and gastrointestinal (GI) tract as an alternative to intravenous injection. Biodistribution and clearance profiles of orally (OR) vs. intravenously (IV) administered Raman nanoparticles were assayed over the course of 48 h. Mice given either an IV or oral dose of Raman nanoparticles radiolabeled with approximately 100 μCi (3.7MBq) of 64Cu were imaged with dynamic microPET immediately post nanoparticle administration. Static microPET images were also acquired at 2 h, 5 h, 24 h and 48 h. Mice were sacrificed post imaging and various analyses were performed on the excised organs to determine nanoparticle localization. The results from microPET imaging, gamma counting, Raman imaging, ICP-MS, and hyperspectral imaging of tissue sections all correlated to reveal no evidence of systemic distribution of Raman nanoparticles after oral administration and complete clearance from the GI tract within 24 h. Paired with the unique signals and multiplexing potential of Raman nanoparticles, this approach holds great promise for realizing targeted imaging of tumors and dysplastic tissues within the oral cavity and GI-tract. Moreover, these results suggest a viable path for the first translation of high-sensitivity Raman contrast imaging into clinical practice.
- Published
- 2017
34. High-capacity hydrogel polymer composite adsorbent for nitrate and phosphate removal from water
- Author
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Jem Valerie D. Perez, Enrico T. Nadres, and Debora F. Rodrigues
- Subjects
chemistry.chemical_compound ,Adsorption ,chemistry ,Chemical engineering ,Nitrate ,General Engineering ,Polymer composites ,High capacity ,Phosphate - Published
- 2017
35. Response surface methodology as a powerful tool to optimize the synthesis of polymer-based graphene oxide nanocomposites for simultaneous removal of cationic and anionic heavy metal contaminants
- Author
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Jem Valerie D. Perez, Maria Lourdes P. Dalida, Enrico T. Nadres, Hang N. Nguyen, and Debora F. Rodrigues
- Subjects
Nanocomposite ,Materials science ,General Chemical Engineering ,Analytical chemistry ,Oxide ,chemistry.chemical_element ,02 engineering and technology ,General Chemistry ,010501 environmental sciences ,021001 nanoscience & nanotechnology ,01 natural sciences ,chemistry.chemical_compound ,Chromium ,Adsorption ,X-ray photoelectron spectroscopy ,chemistry ,Response surface methodology ,Fourier transform infrared spectroscopy ,0210 nano-technology ,0105 earth and related environmental sciences ,BET theory ,Nuclear chemistry - Abstract
Nanocomposites containing graphene oxide (GO), polyethyleneimine (PEI), and chitosan (CS) were synthesized for chromium(VI) and copper(II) removal from water. Response surface methodology (RSM) was used for the optimization of the synthesis of the CS–PEI–GO beads to achieve simultaneous maximum Cr(VI) and Cu(II) removals. The RSM experimental design involved investigating different concentrations of PEI (1.0–2.0%), GO (500–1500 ppm), and glutaraldehyde (GLA) (0.5–2.5%), simultaneously. Batch adsorption experiments were performed to obtain responses in terms of percent removal for both Cr(VI) and Cu(II) ions. A second-order polynomial equation was used to model the relationship between the synthesis conditions and the adsorption responses. High R2 values of 0.9848 and 0.8327 for Cr(VI) and Cu(II) removal, respectively, were obtained from the regression analyses, suggesting good correlation between observed experimental values and predicted values by the model. The optimum bead composition contained 2.0% PEI, 1500 ppm GO, and 2.08% GLA, and allowed Cr(VI) and Cu(II) removals of up to 91.10% and 78.18%, respectively. Finally, characterization of the structure and surface properties of the optimized CS–PEI–GO beads was carried out using X-ray diffraction (XRD), porosity and BET surface area analysis, scanning electron microscopy (SEM), Fourier transform infrared spectroscopy (FTIR), and X-ray photoelectron spectroscopy (XPS), which showed favorable adsorbent characteristics as given by a mesoporous structure with high surface area (358 m2 g−1) and plenty of surface functional groups. Overall, the synthesized CS–PEI–GO beads were proven to be effective in removing both cationic and anionic heavy metal pollutants.
- Published
- 2017
36. Tau local structure shields amyloid motif and controls aggregation propensity
- Author
-
Levent Sari, Dailu Chen, Bryan D. Ryder, Marc I. Diamond, Omar M. Kashmer, Milo M. Lin, Valerie A. Perez, Kenneth W. Drombosky, Zhiqiang Hou, Lukasz A. Joachimiak, and Da Nae R. Woodard
- Subjects
chemistry.chemical_classification ,0303 health sciences ,Amyloid ,biology ,Chemistry ,In silico ,Alternative splicing ,Tau protein ,Peptide ,Cell biology ,03 medical and health sciences ,0302 clinical medicine ,Förster resonance energy transfer ,biology.protein ,Missense mutation ,Gene ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
Tauopathies are neurodegenerative diseases characterized by intracellular amyloid deposits of tau protein. Missense mutations in the tau gene (MAPT) correlate with aggregation propensity and cause dominantly inherited tauopathies, but their biophysical mechanism driving amyloid formation is poorly understood. Many disease-associated mutations localize within tau’s repeat domain at inter-repeat interfaces proximal to amyloidogenic sequences, such as 306VQIVYK311. Using cross-linking mass spectrometry, intramolecular FRET, recombinant protein and synthetic peptide systems, in silico modeling, and cell models, we conclude that the aggregation prone 306VQIVYK311 motif forms metastable compact structures with the upstream sequence that modulates aggregation propensity. Disease-associated mutations, isomerization of a critical proline, or alternative splicing are all sufficient to destabilize this local structure and trigger spontaneous aggregation. These findings provide a biophysical framework to explain the basis of early conformational changes that may underlie genetic and sporadic tau pathogenesis.
- Published
- 2018
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