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Lycophytes and ferns represent one of the earliest-diverging lineages of vascular plants, with the Lycopodiaceae family constituting the basal clade among lycophytes. In this research, we successfully assembled and annotated the complete Lycopodium japonicum Thunb. (L. japonicum) mitochondrial genome (mitogenome) utilizing PacBio HiFi sequencing data, resulting in a single circular molecule with a size of 454,458 bp. 64 unique genes were annotated altogether, including 34 protein-coding genes, 27 tRNAs and 3 rRNAs. It also contains 32 group II introns, all of which undergo cis-splicing. We identified 195 simple sequence repeats, 1,948 dispersed repeats, and 92 tandem repeats in the L. japonicum mitogenome. Collinear analysis indicated that the mitogenomes of Lycopodiaceae are remarkably conserved compared to those of other vascular plants. We totally identified 326 RNA editing sites in 31 unique protein-coding genes with 299 sites converting cytosine to uracil and 27 sites the reverse. Notably, the L. japonicum mitogenome has small amounts foreign DNA from plastid or nuclear origin, accounting for only 2.81% of the mitogenome. The maximum likelihood phylogenetic analysis based on 23 diverse land plant mitogenomes and plastid genomes supports the basal position of lycophytes within vascular plants and they form a sister clade to all other vascular lineages, which is consistent with the PPG I classification system. As the first reported mitogenome of Lycopodioideae subfamily, this study enriches our understanding of Lycopodium mitogenomes, and sets the stage for future research on mitochondrial diversity and evolution within the lycophytes and ferns. [ABSTRACT FROM AUTHOR]

Extreme precipitation events are becoming more intense and frequent due to climate change. This climatic shift is impacting the structure and dynamics of natural communities and the key ecosystem services they provide. Changes in species abundance under these conditions are thought to be mediated by functional traits, morpho‐physiological characteristics of an organism that impact its fitness. Future environmental conditions may, therefore, favour different traits to those in present‐day communities. After 6 years of manipulated precipitation levels, including drought (−50% of ambient precipitation), irrigation (+50% of ambient precipitation), and control (ambient precipitation), we measured five key functional traits (plant height, leaf dry matter content [LDMC], leaf thickness, specific leaf area [SLA], and leaf phosphorus concentration) in 586 individual vascular plants to study the effects of precipitation changes on community‐weighted functional traits. Additionally, we tested whether the precipitation change effects on the traits depend on the time of the growing season. As expected, reduced precipitation impacted community composition only for the late‐season timing, after the seasonal field mowing, but led to a significant change in all community‐level plant traits between season timings. Under drought, communities shifted towards shorter individuals with thicker but small leaves and lower phosphorous content. Overall, a combination of community reassembly and intraspecific variation contributed to community‐weighted differences between control and drought plots for plant height, SLA, and LDMC traits. Species turnover was the main driver of community‐weighted means (CWMs) shifts in all traits in the late‐season but SLA. Whereas all traits showed variations at the community level with drought, SLA and LDMC were the most responsive traits at the species level. Nevertheless, our results suggest underestimation of intraspecific variation due to sensitive species lower abundance under stress. No differences in CWMs of functional traits were observed between control and irrigated plots. Synthesis: Our findings suggest that functional trait composition of grassland communities may shift under climate change‐induced drought, depending on the growing season timings. Trait‐based attempts to predict ecosystem functioning must account for such temporal variation in community trait values. [ABSTRACT FROM AUTHOR]

Several diatom species, including Cymbella amplificata, C. janischii and Navicula aurora, are largely restricted to Asia and western North America. These disjunctions likely represent recent long-distance dispersals or chance introductions. The two continents also support clusters of diatom species in several fossil and extant genera. One of these genera, Gomphosinica, is exclusive to the two continents but includes only one species in common. This suggests that these disjunct clusters of species arose from common precursors that underwent radiations while being separated for millennia. The divergence of these lineages likely began more than 25 Ma when island arcs of Asian (Siberian) origin docked on North America. The Asian/North American connection is not restricted to diatoms; vascular plants and dinosaur fossils also exhibit this connection. Differences between diatom floras east and west of the Rocky Mountains, as first noted by Ehrenberg, can be explained by differences in Earth history and geology. Researchers interested in diatom biogeography would do well to become familiar with the tectonic history and geology of their geographic regions of interest. Some cases of ‘invasive’ or ‘alien’ diatoms may simply be that changing conditions allowed existing but latent species to prosper and become apparent to the unaided eye. [ABSTRACT FROM AUTHOR]

Vascular plants are diverse and a major component of terrestrial ecosystems, yet their geographic distributions remain incomplete. Here, I present a global database of vascular plant distributions by integrating species distribution models calibrated to species' dispersal ability and natural habitats to predict native range maps for 201,681 vascular plant species into unsurveyed areas. Using these maps, I uncover unique patterns of native vascular plant diversity, endemism, and phylogenetic diversity revealing hotspots in underdocumented biodiversity-rich regions. These hotspots, based on detailed species-level maps, show a pronounced latitudinal gradient, strongly supporting the theory of increasing diversity toward the equator. I trained random forest models to extrapolate diversity patterns under unbiased global sampling and identify overlaps with modeled estimations but unveiled cryptic hotspots that were not captured by modeled estimations. Only 29% to 36% of extrapolated plant hotspots are inside protected areas, leaving more than 60% outside and vulnerable. However, the unprotected hotspots harbor species with unique attributes that make them good candidates for conservation prioritization. [ABSTRACT FROM AUTHOR]

Summary More than 15% of all vascular plant species may remain scientifically undescribed, and many of the > 350 000 described species have no or few geographic records documenting their distribution. Identifying and understanding taxonomic and geographic knowledge shortfalls is key to prioritising future collection and conservation efforts. Using extensive data for 343 523 vascular plant species and time‐to‐event analyses, we conducted multiple tests related to plant taxonomic and geographic data shortfalls, and identified 33 global diversity darkspots (those ‘botanical countries’ predicted to contain most undescribed and not yet recorded species). We defined priority regions for future collection according to several socio‐economic and environmental scenarios. Most plant diversity darkspots are found within global biodiversity hotspots, with the exception of New Guinea. We identify Colombia, Myanmar, New Guinea, Peru, Philippines and Turkey as global collection priorities under all environmental and socio‐economic conditions considered. Our study provides a flexible framework to help accelerate the documentation of global plant diversity for the implementation of conservation actions. As digitisation of the world's herbaria progresses, collection and conservation priorities may soon be identifiable at finer scales. [ABSTRACT FROM AUTHOR]

Summary: Drought‐induced xylem embolism is a primary cause of plant mortality. Although c. 70% of cycads are threatened by extinction and extant cycads diversified during a period of increasing aridification, the vulnerability of cycads to embolism spread has been overlooked.We quantified the vulnerability to drought‐induced embolism, pressure–volume curves, in situ water potentials, and a suite of xylem anatomical traits of leaf pinnae and rachises for 20 cycad species. We tested whether anatomical traits were linked to hydraulic safety in cycads.Compared with other major vascular plant clades, cycads exhibited similar embolism resistance to angiosperms and pteridophytes but were more vulnerable to embolism than noncycad gymnosperms. All 20 cycads had both tracheids and vessels, the proportions of which were unrelated to embolism resistance. Only vessel pit membrane fraction was positively correlated to embolism resistance, contrary to angiosperms. Water potential at turgor loss was significantly correlated to embolism resistance among cycads.Our results show that cycads exhibit low resistance to xylem embolism and that xylem anatomical traits – particularly vessels – may influence embolism resistance together with tracheids. This study highlights the importance of understanding the mechanisms of drought resistance in evolutionarily unique and threatened lineages like the cycads. [ABSTRACT FROM AUTHOR]

The genus Cortinarius (Agaricales, Basidiomycota) is one of the most species-rich fungal genera, with thousands of species reported. Cortinarius species are important ectomycorrhizal fungi and form associations with many vascular plants globally. Until recently Cortinarius was the single genus of the family Cortinariaceae, despite several attempts to provide a workable, lower-rank hierarchical structure based on subgenera and sections. The first phylogenomic study for this group elevated the old genus Cortinarius to family level and the family was split into ten genera, of which seven were described as new. Here, by careful re-examination of the recently published phylogenomic dataset, we detected extensive gene-tree/species-tree conflicts using both concatenation and multispecies coalescent approaches. Our analyses demonstrate that the Cortinarius phylogeny remains unresolved and the resulting phylogenomic hypotheses suffer from very short and unsupported branches in the backbone. We can confirm monophyly of only four out of ten suggested new genera, leaving uncertain the relationships between each other and the general branching order. Thorough exploration of the tree space demonstrated that the topology on which Cortinarius revised classification relies on does not represent the best phylogenetic hypothesis and should not be used as constrained topology to include additional species. For this reason, we argue that based on available evidence the genus Cortinarius should not (yet) be split. Moreover, considering that phylogenetic uncertainty translates to taxonomic uncertainty, we advise for careful evaluation of phylogenomic datasets before proposing radical taxonomic and nomenclatural changes. [ABSTRACT FROM AUTHOR]

Indonesia, located in Southeast Asia, is the world's largest tropical island country. It is globally recognized as a unique center of biodiversity in the Asian–Australian transitional zone. To date, however, no national plant checklist of Indonesia has been published. Here, we collected botanical information on the flora of Indonesia and presented for the first time a checklist of known native species of vascular plants in the country. Our checklist included 30,466 species belonging to 2968 genera and 317 families, representing 8.7% of the 351,180 vascular plant species worldwide. Among the seven regions, Sumatra had the highest number of species at 10,902, followed by Indonesian New Guinea (9935), Java (9289), Kalimantan (9191), Sulawesi (7048), Maluku (5294), and Lesser Sunda Islands (4514). In contrast, Indonesian New Guinea had a much higher proportion of locally endemic species than other regions (59%). The seven regions were divided into three phytogeographical areas: the Sunda Shelf, the Sahul Shelf, and the Wallacea, based on similarities in floristic composition. Our checklist for Indonesia provides basic information for biodiversity conservation and associated research. [ABSTRACT FROM AUTHOR]

Central Asia (CA) is located in the interior of the Eurasian continent and consists of five countries—Kazakhstan, Kyrgyzstan, Tajikistan, Turkmenistan, and Uzbekistan. It contains the largest concentration of temperate deserts and mountains of CA biodiversity hotspots. However, regionwide floristic diversity is sorely lacking, and nationwide floristic diversity is seriously outdated in this region. Using the data collected by the Mapping Asia Plants (MAP) project, we describe and analyze the diverse floristic characteristics of plant diversity in CA at both the regional and national levels, including the dominant families and genera, endemic taxa, and floristic similarity. The results allow the compilation of a new checklist of vascular plants in CA, including 9643 taxa (1198 genera within 139 families) and 3409 endemic taxa (414 genera in 66 families). We confirm that there are 5695, 4036, 4542, 3005, and 4222 species of vascular plants within the CA countries, of which 532, 326, 505, 175, and 301 species are endemic taxa in Kazakhstan, Kyrgyzstan, Tajikistan, Turkmenistan, and Uzbekistan, respectively. The region's biodiversity is notable for its high degree of endemism—up to 35.35%—which contributes to the floristic uniqueness and the irreplaceability of CA. Tajikistan, encompassing the most dominant area of the CA mountains, has the highest species density (3.19/100 km2) and endemism (11.12%) among the five countries. Neighboring countries such as Tajikistan and Uzbekistan, and Kazakhstan and Kyrgyzstan share more species in common, while Turkmenistan has less species overlap with the other four countries. Trends in endemic and total taxa are consistent. This comprehensive inventory is novel, revealing CA's plant diversity in two dimensions and providing a solid foundation for subsequent research that will be beneficial to the transboundary conservation and sustainable use of plant resources in CA. [ABSTRACT FROM AUTHOR]

Assessing sampling biases caused by nonrandom specimen collecting is crucial in systematics, biogeography, and conservation. Nevertheless, research on the collecting biases of vascular plants in China remains limited. Here, we investigated the collecting status of gymnosperms in China using 48 673 herbarium specimens representing 180 Chinese gymnosperm species. The spatial and temporal patterns, collector and determiner biases, and phylogenetic and taxon biases were studied to comprehend the collecting bias of gymnosperms in China during 1900–2021. Meanwhile, we assessed the inventory completeness of gymnosperms to identify collecting hotspots and coldspots. The results showed that gymnosperms predominantly inhabit mountainous areas in China. The historical collecting of gymnosperms in China can be divided into two distinct stages with four peaks of collecting activities. The distribution of collected or identified specimens per individual displays significant skewness, and the collecting of gymnosperms has the issues of overcollecting or undersampling. Inventory completeness remains deficient, and collecting intensity is weak in both northern China and the range of 22°–25° N in the southern region (i.e., central Yunnan, southern Guangxi, and eastern Guangdong). Additionally, observation of the spatial distribution reveals both hotspots and coldspots scattered across mountain regions, lacking clustering. This study revealed a highly polarized collecting pattern for gymnosperms in China. Consequently, we recommend optimizing collecting measures, targeted specimen collecting, and continuous dynamic monitoring of gymnosperms in future collecting efforts. These recommendations hold relevance not only for gymnosperms in China but also for other land plants worldwide. [ABSTRACT FROM AUTHOR]

Overall, 34 local floras of vascular plants were analyzed at testing sites in the Middle Volga region with an area of 400 km2. Noticeable differences were revealed in the nature of correlations between the number of species of adventitious and native flora fractions and environmental factors: climate and relief. In the region, the number of native species is negatively related to air temperature, evaporation rates, and water deficit, while adventive species show a positive relationship with these characteristics. Adventive species are more often found in gently sloping lowlands in polygons characterized by increased elevation differences and drainage area. In general, adventitious species are more associated with semi-arid conditions in sites with relatively high ranges of environmental factors and standard deviation. Multiple regression showed that adventive species are more closely related to environmental factors than native species. In the region, adventive species are distributed predominantly in places (ecotopes) with increased environmental heterogeneity. An analysis of the relationships with environmental factors of the studied fractions may indicate that their distribution on the test sites is consistent, as a result of which they do not show opposition, which is also confirmed by the weak positive relationship between the richness of their species. [ABSTRACT FROM AUTHOR]

• A diverse assemblage of anatomically preserved plants is described from Oum El Jerane. • The euphyllophytes include one iridopterid, two cladoxylopsids and two aneurophytales. • Arachnoxylon and Triloboxylon are recorded for the first time in Gondwana. • The new plant assemblage may belong to a drier phytochorion than the Laurussia one. The Middle Devonian is a transitional period for the first vascular plants, which acquire modern vegetative and reproductive structures, diversify considerably and, within the euphyllophytes, evolve the first representatives of modern plant groups, the monilophytes and lignophytes. However, the dynamics of this diversification across the different paleocontinents remains obscure, particularly within Gondwana. The upper Givetian locality of Oum el Jerane, in southeastern Morocco, has yielded a new assemblage of anatomically preserved plant remains whose description contributes to a better understanding of the floras of the northern margin of Gondwana during the Middle Devonian. The euphyllophytes include one iridopterid, Arachnoxylon minor , two cladoxylopsids, one of which represents the new genus Jerana , and two aneurophytales affiliated with the genus Triloboxylon. The cladoxylopsid remains from Oum el Jerane correspond to relatively small plants compared to the well-known coeval cladoxylopsids of Laurussia. Compared to the taxonomic composition of the four phytochoria recently defined for the Middle Devonian, the Oum el Jerane plant assemblage corresponds to the 'subtropical' phytochorion, which is close to the 'Laurussia' phytochorion, but which would correspond to drier environmental conditions. [ABSTRACT FROM AUTHOR]

Peatlands store large amounts of carbon (C), a function potentially threatened by climate change. Peatlands composed of vascular cushion plants are widespread in the northern and central high Andes (páramo, wet and dry puna), but their C dynamics are hardly known. To understand the interplay of the main drivers of peatland C dynamics and to infer geographic patterns across the Andean regions, we addressed the following question: How do topography, hydrology, temperature, past climate variability, and vegetation influence the C dynamics of these peatlands? We summarize the available information on observed spatial and inferred temporal patterns of cushion peatland development in the tropical and subtropical Andes. Based on this, we recognize the following emerging patterns, which all need testing in further studies addressing spatial and temporal patterns of C accumulation: (1) Peatlands in dry climates and those in larger catchments receive higher sediment inputs than peatlands from wet puna and páramo and in small catchments. This results in peat stratigraphies intercalated with mineral layers and affects C accumulation by triggering vegetation changes. (2) High and constant water tables favor C accumulation. Seasonal water level fluctuations are higher in wet and dry puna, in comparison with páramo, leading to more frequent episodes of C loss in puna. (3) Higher temperatures favor C gain under high and constant water availability but also increase C loss under low and fluctuating water levels. (4) C accumulation has been variable through the Holocene, but several peatlands show a recent increase in C accumulation rates. (5) Vegetation affects C dynamics through species‐specific differences in productivity and decomposition rate. Because of predicted regional differences in global climate change manifestations (seasonality, permafrost behavior, temperature, precipitation regimes), cushion peatlands from the páramo are expected to mostly continue as C sinks for now, whereas those of the dry puna are more likely to turn to C sources as a consequence of increasing aridification. [ABSTRACT FROM AUTHOR]

Herbaria phycological collections have approximately one million 700 thousand specimens preserved in European herbaria, a significantly lower number when compared to vascular plants, due to factors such as greater sampling difficulty and fewer specialists. Several studies report that coastal systems have undergone dramatic ecological changes in the last 150 years, with macroalgae being a particularly affected group. Thus, macroalgal herbaria are essential sources for the study and conservation of this biodiversity, as well as a pillar that responds to several ecological questions. Despite having a large coastline, Portugal's phycological collections are scarce, poorly developed, and practically inaccessible digitally. In 2021/2022, all the phycological specimens present at LISI were the focus of this exploratory project whose objective was to catalog them, taxonomically review the specimens and place them at the service of the scientific community through the incorporation of digitized vouchers into online databases. Three marine collections were constituted and studied, accounting for a total of 852 vouchers and more than 1800 specimens, being the Portuguese Marine Macroalgae Collection, the oldest digitized phycological collection available in Portugal. This project provides an opportunity for other educational institutions to embrace their long-neglected collections as well. [ABSTRACT FROM AUTHOR]

Biological soil crusts (biocrusts) can thrive under environmental conditions that are stressful for vascular plants such as high temperatures and/or extremely low moisture availability. In these settings, and in the absence of disturbance, cover of biocrusts commonly exceeds cover of vascular plants. Arid landscapes are also typically slow to recover from disturbance and prone to altered vegetation and invasion by exotic species. In the sagebrush ecosystems, cover of annual, exotic, invasive grasses are lower where cover of biocrusts and vascular plants are greater, suggesting that biocrusts play a role in helping arid sites avoid conversion to dominance by invasive grasses. The conceptual framework for assessing ecological resistance and resilience (R&R) is used across the region to estimate the risk of invasion by annual grasses and the likelihood of recovery of native plants following disturbance. However, this framework does not currently account for biocrusts. We used data collected by the Bureau of Land Management Assessment, Inventory, and Monitoring program to relate biocrusts, specifically the presence of lichens and mosses, to the R&R framework. Lichens frequently occur on warm, dry sites, classified as lower R&R. Mosses frequently occur on sites classified as moderate or moderately low R&R. Without management practices that favor biocrusts in low‐moderate R&R, these areas may be more vulnerable to transitioning from being dominated by shrubs to annual grasses. Under climate change scenarios, the area occupied by lower R&R sites is likely to increase, suggesting that the role of biocrusts in maintaining site resistance to invasion may also increase. [ABSTRACT FROM AUTHOR]

Summary: Decisions of the General Committee are reported on proposals and requests in Report 18 of the Nomenclature Committee (NC) for Fossils, Report 75 of the NC for Vascular Plants, and Report 24 of the NC for Fungi. The latter also included additions to the list of protected names. Proposal (2072) in NC for Fungi Report 22 is recommended. [ABSTRACT FROM AUTHOR]

Environmental factors mediating community change over time have been well documented for vascular plants, but not for their non‐vascular relatives, bryophytes. Elevation is one variable that has been explored regarding bryophyte community change wherein as elevation increases, bryophyte communities increase in diversity and abundance, whereas diversity and abundance decline for vascular plant communities. This begs the question, how might other environmental variables such as slope and aspect influence bryophyte communities, and how might these variables drive community changes over time? Our study focused on bryophyte communities in high elevation, spruce‐fir zones in the Great Smoky Mountains National Park (GSMNP), located in the Southeastern United States to answer this question. Plots established in 2007 were revisited and reinventoried in 2020. Comparisons were drawn to determine whether changes in bryophyte coverage corresponded to canopy cover change and environmental factors including elevation, slope, and aspect. Diversity and abundance at the two timepoints were analyzed. Alpha diversity and turnover across orders of q were compared for different elevation zones. Bryophyte alpha diversity at q = 0 significantly declined over time in association with elevation, but at q = 2, changes in alpha diversity varied according to changes in gap fraction, a measure of canopy cover, and slope. Bryophyte coverage remained stable except in the highest elevation zone dominated by fir trees where there was a decline in coverage predicted by aspect. There were high rates of turnover across all elevation zones regardless of Hill number. In contrast with other studies which examine how environmental variables mediate community changes at q = 0, the species richness of a community, our study shows that the environmental drivers of bryophyte community change vary depending on how abundance is weighted. [ABSTRACT FROM AUTHOR]

Selaginellaceae, originated in the Carboniferous and survived the Permian–Triassic mass extinction, is the largest family of lycophyte, which is sister to other tracheophytes. It stands out from tracheophytes by exhibiting extraordinary habitat diversity and lacking polyploidization. The organelle genome-based phylogenies confirmed the monophyly of Selaginella , with six or seven subgenera grouped into two superclades, but the phylogenetic positions of the enigmatic Selaginella sanguinolenta clade remained problematic. Here, we conducted a phylogenomic study on Selaginellaceae utilizing large-scale nuclear gene data from RNA-seq to elucidate the phylogeny and explore the causes of the phylogenetic incongruence of the S. sanguinolenta clade. Our phylogenetic analyses resolved three different positions of the S. sanguinolenta clade, which were supported by the sorted three nuclear gene sets, respectively. The results from the gene flow test, species network inference, and plastome-based phylogeny congruently suggested a probable hybrid origin of the S. sanguinolenta clade involving each common ancestor of the two superclades in Selaginellaceae. The hybrid hypothesis is corroborated by the evidence from rhizophore morphology and spore micromorphology. The chromosome observation and Ks distributions further suggested hybridization accompanied by polyploidization. Divergence time estimation based on independent datasets from nuclear gene sets and plastid genome data congruently inferred that allopolyploidization occurred in the Early Triassic. To our best knowledge, the allopolyploidization in the Mesozoic reported here represents the earliest record of tracheophytes. Our study revealed a unique triad of phylogenetic positions for a hybrid-originated group with comprehensive evidence and proposed a hypothesis for retaining both parental alleles through gene conversion. [ABSTRACT FROM AUTHOR]

We present the updated checklist of the alien flora of Mongolia, with information on species status, taxonomy, distribution, habitats, and economic use. In total, we recorded 154 taxa of alien plants, of which 33 are naturalized and 121 are casual. The alien flora belongs to 32 families, with Amaranthaceae, Fabaceae, and Brassicaceae containing most of the naturalized species and Asteraceae and Poaceae being the richest in casuals. Annuals (101 species) and perennials (27 species) are the most common life forms among the alien species of Mongolia, while woody and aquatic are only represented by two species and parasitic by one species. The majority of Mongolian alien plants originate from temperate Asia (81 species), Europe (72 species), and Africa (53 species). Alien species are restricted to a relatively narrow range of habitats, all heavily transformed by humans, with 42.2% of all species recorded in agricultural habitats. Regarding economic use, food plants dominate, while those used as fodder show the greatest naturalization success. The 29 most widespread naturalized alien species were recorded in all 22 provinces. Compared to other countries in temperate Asia, the Mongolian alien flora is relatively poor, which can be attributed to harsh climatic conditions and the country's isolation in the past. Our study provides the first step toward a science-based approach to plant invasions by policymakers, authorities, and managers in Mongolia. [ABSTRACT FROM AUTHOR]

The roots of vascular plants are colonised by a multitude of microbes, which play an important role in plant health and stress resilience. Drought stress in particular is devastating for crop yield and causes major shifts in the rhizosphere microbial communities. However, the microbiome associated to the rhizoids (hereafter termed rhizoid‐sphere) of the nonvascular bryophytes remains largely unexplored. Here, we use amplicon sequencing to explore the rhizoid‐sphere microbiome of three bryophyte species under drought and well‐watered conditions. Comparing rhizoid‐sphere microbial communities associated with the two liverworts Marchantia polymorpha and Marchantia paleacea and the moss Physcomitrium patens showed characteristic differences in composition between host species and both conserved and unique changes under drought. At phylum level, these changes were similar to changes in the rhizosphere of angiosperms under drought. Furthermore, we observed strong differences in rhizoid‐sphere colonisation between bryophyte species for taxa known for nitrogen fixation and plant growth promotion. Interestingly, M. polymorpha prioritised the growth of belowground organs under osmotic stress, as is the case for angiosperms under drought. Taken together, our results show interesting parallels between bryophytes and angiosperms in the relation with their rhizo(id‐)sphere, suggesting evolutionary conservation among land plants in their response to drought stress. [ABSTRACT FROM AUTHOR]

Non‐crop (segetal) plants in arable systems are commonly perceived simply as ‘weeds’, that is, harmful at worst and undesirable at best. The increase in management intensity in European arable systems has vastly reduced the populations of all but the most disturbance‐tolerant plant species, negatively impacting the whole agricultural food web. In recent years, efforts have been made to promote agricultural biodiversity through measures such as flower strips and unsprayed field margins. However, studies of their impacts on the arable flora have rarely considered their spatial variation within the crop field. We investigated the spatial distribution of vascular plant species richness and their contribution to the food web via biomass and flower units in conventional and agri‐environment cereal fields in six regions of Germany. We studied two types of in‐crop measures (extensive cereals without pesticides or fertiliser, and with or without intercropping with flowering species) and one adjacent measure (neighbouring flower strip), recording at 1‐m intervals from the field edge to the interior. These results were then extrapolated to illustrate the effects of these measures on resource provision at the field scale. Species richness and plant biomass dropped off sharply after the first metre in the conventional treatments, regardless of the adjacent habitat. The ‘extensive’ treatments maintained a much higher level of diversity and resource provision in the field interior. At the field level, this can mean more than a 60‐fold difference in the provision of flowering resources between conventional management (1900 flower units/ha) and agri‐environment measures (AEMs) (127,000 units/ha for extensive cereals). Synthesis and applications. The strong edge effects we found in conventional cultivation support the premise that reducing field sizes could play a role in promoting in‐crop biodiversity. However, incorporating extensive field margins as an AEM would be more efficient at maximising the diversity of generalists whilst maintaining high yields. [ABSTRACT FROM AUTHOR]

The unresolved phylogenetic framework within the Selaginellaceae subfamily Gymnogynoideae (ca. 130 species) has hindered our comprehension of the diversification and evolution of Selaginellaceae, one of the most important lineages in land plant evolution. Here, based on plastid and nuclear data extracted from genomic sequencing of more than 90% species of all genera except two in Gymnogynoideae, a phylogenomic study focusing on the contentious relationships among the genera in Gymnogynoideae was conducted. Our major results included the following: (1) Only single-copy region (named NR) and only one ribosomal operon was firstly found in Afroselaginella among vascular plants, the plastome structure of Gymnogynoideae is diverse among the six genera, and the direct repeats (DR) type is inferred as the ancestral state in the subfamily; (2) The first strong evidence was found to support Afroselaginella as a sister to Megaloselaginella. Alternative placements of Ericetorum and Gymnogynum were detected, and their relationships were investigated by analyzing the variation of phylogenetic signals; and (3) The most likely genus-level relationships in Gymnogynoideae might be: ((Bryodesma, Lepidoselaginella), (((Megaloselaginella, Afroselaginella), Ericetorum), Gymnogynum)), which was supported by maximum likelihood phylogeny based on plastid datasets, maximum likelihood, and Bayesian inference based on SCG dataset and concatenated nuclear and plastid datasets and the highest proportion of phylogenetic signals of plastid genes. [ABSTRACT FROM AUTHOR]

Despite their ecological significance, non‐vascular photoautotrophs (NVPs) are frequently excluded from ecological experimental studies, leading to a limited comprehension of how their communities are affected by the ecosystem dynamics and an underestimation of their role in ecosystem functioning. We studied the impact of vascular plant taxonomic and functional diversity on three groups of ground NVPs (lichens, bryophytes, and cyanobacteria) within one of the longest‐running plant biodiversity experiments (Biodiversity and Ecosystem Function at Cedar Creek Ecosystem Science Reserve). Utilizing the permanent plot framework of this experiment, we analyzed the effects of almost 30 years of treatment across various levels of vascular plant taxonomic and functional diversity on NVPs. For each diversity level we documented NVP cover and richness. Using generalized linear models we evaluated the effect of vascular plant taxonomic and functional diversity, as well as environmental factors affected by vascular diversity (such as vascular plant cover, light penetration, soil nutrient content, and microtopography) on NVP richness and cover. Using these models, we conducted structural equation modeling analyses (SEM) that allowed us to differentiate the direct and indirect impacts of vascular plant taxonomic and functional diversity on NVPs. Our results showed that both lichen and bryophyte richness and cover decreased with higher vascular plant taxonomic and functional diversity, while cyanobacteria cover increased as a function of the same parameters. We also showed that microtopography serves as better predictor for lichens and bryophytes, while nutrient‐related factors perform better as predictors for cyanobacteria. Additionally, our findings indicate that NVP cover ranged from 0.001% to 100% (mean 15%) in the surveyed plots, representing a major, still ignored, component of the experimental plots. This study shows that vascular plant diversity directly and indirectly affects NVP communities, but the consequences of these effects at community and ecosystem levels are still to be explored. [ABSTRACT FROM AUTHOR]

Aim Location Taxon Methods Results Main Conclusions Mountains are often used to study how environmental factors influence biodiversity. However, we have limited understanding of the processes causing biodiversity variation in mountains and whether such processes vary across trophic levels and spatial scales. The aim of this study was to evaluate (i) whether community assembly processes varied along elevational gradients, (ii) whether there were differences in such variation between primary producers (vascular plants) and secondary consumers (spiders) and (iii) whether there were scale dependencies in any elevational variation in community assembly.Fennoscandia, Northern Sweden.Vascular plants, spiders.We used phenotypic and phylogenetic dispersion to quantify how elevation influenced community assembly of vascular plants and spiders and whether there were any scale dependencies in such influences. Our original data of plant and spider communities came from our own field surveys, phenotypic dispersion was calculated based on matrices of ecological traits, and phylogenetic dispersion was calculated from phylogenetic trees for each organism group. Trait matrices were based on a combination of literature values and our own measurements. The phylogeny for vascular plants was based on a published plant super‐tree, whereas the phylogeny for spiders was created by ourselves based on the DNA sequences at the mitochondrial cytochrome c oxidase subunit 1 (COI).Plants were environmentally filtered throughout all elevations and scales, but the importance of convergent evolution increased with elevation. For spiders, the importance of environmental filtering as well as niche conservatism increased with elevation. For both groups, communities at smaller scales were more influenced by biotic regulation and niche conservatism than at larger scales.Our study highlights both taxonomic differences and scale dependencies in how elevation influences community assembly. We argue that these results can have broad ramifications for our understanding of how spatial variation in biodiversity is generated and maintained. This may have particular relevance for our ability to predict the ecological consequences of climate change. Our results further highlight that high elevation specialists may suffer increased risks of climate driven extinctions due to a combination of increased competition and increased fragmentation of suitable habitats. Particularly for spiders, which had high elevation specialists clustered along specific lineages, such extinctions could lead to significant loss of phylogenetic variation. [ABSTRACT FROM AUTHOR]

In our changing world, understanding plant community responses to global change drivers is critical for predicting future ecosystem composition and function. Plant functional traits promise to be a key predictive tool for many ecosystems, including grasslands; however, their use requires both complete plant community and functional trait data. Yet, representation of these data in global databases is sparse, particularly beyond a handful of most used traits and common species. Here we present the CoRRE Trait Data, spanning 17 traits (9 categorical, 8 continuous) anticipated to predict species' responses to global change for 4,079 vascular plant species across 173 plant families present in 390 grassland experiments from around the world. The dataset contains complete categorical trait records for all 4,079 plant species obtained from a comprehensive literature search, as well as nearly complete coverage (99.97%) of imputed continuous trait values for a subset of 2,927 plant species. These data will shed light on mechanisms underlying population, community, and ecosystem responses to global change in grasslands worldwide. [ABSTRACT FROM AUTHOR]

Summary Polysaccharide structural complexity not only influences cell wall strength and extensibility but also hinders pathogenic and biotechnological attempts to saccharify the wall. In certain species and tissues, glucuronic acid side groups on xylan exhibit arabinopyranose or galactose decorations whose genetic and evolutionary basis is completely unknown, impeding efforts to understand their function and engineer wall digestibility. Genetics and polysaccharide profiling were used to identify the responsible loci in Arabidopsis and Eucalyptus from proposed candidates, while phylogenies uncovered a shared evolutionary origin. GH30‐family endo‐glucuronoxylanase activities were analysed by electrophoresis, and their differing specificities were rationalised by phylogeny and structural analysis. The newly identified xylan arabinopyranosyltransferases comprise an overlooked subfamily in the GT47‐A family of Golgi glycosyltransferases, previously assumed to comprise mainly xyloglucan galactosyltransferases, highlighting an unanticipated adaptation of both donor and acceptor specificities. Further neofunctionalisation has produced a Myrtaceae‐specific xylan galactosyltransferase. Simultaneously, GH30 endo‐glucuronoxylanases have convergently adapted to overcome these decorations, suggesting a role for these structures in defence. The differential expression of glucuronoxylan‐modifying genes across Eucalyptus tissues, however, hints at further functions. Our results demonstrate the rapid adaptability of biosynthetic and degradative carbohydrate‐active enzyme activities, providing insight into plant–pathogen interactions and facilitating plant cell wall biotechnological utilisation. [ABSTRACT FROM AUTHOR]

Globally, biological soil crusts (BSCs) are crucial ecosystem components that perform essential functions important to ecosystem stability. However, the potential mechanisms of BSC's effect on vascular plant recruitment and establishment are largely unknown. Furthermore, few studies have considered BSC‐vascular plant analyses in conjunction with BSC microenvironments, seed traits, and plant life stages simultaneously. Thus, we chose six typical plants with different seed traits on the Loess Plateau and conducted a growth chamber experiment to evaluate the effects of BSC types, disturbance, seeding positions, and moisture on seed germination, survival, and seedling growth. We also explored the effects of BSC presence and disturbance on seedling emergence through field investigation. The results indicated that the main effects of the four factors, BSC type, disturbance, seeding location, and moisture, and their two‐ and three‐dimensional interactions had significant effects on the performance of most of the studied species. Disturbance and wetting treatments with shorter watering intervals promoted the performance of most plants, and moisture could modify the effect of BSCs on plants. The effect of BSCs on plant performance was related to seed traits and plant life stage and the presence of the BSC promotes the growth of the plants when it reaches the survival stage. In field observations, we found that the number of seedling species was lower on BSCs compared to bare lands and that the number of species on broken crusts was greater than on intact crusts; while seedling density on bare land was significantly higher than it in BSC patches. [ABSTRACT FROM AUTHOR]

Premise: Hybridization and polyploidization are common in vascular plants and important drivers of biodiversity by facilitating speciation and ecological diversification. A primary limitation to making broad synthetic discoveries in hybrid and allopolyploid biodiversity research is the absence of a standardized framework to compare data across studies and biological scales. Methods: Here, I present a new quantitative framework to investigate and interpret patterns in hybrid and allopolyploid biology called the divergence index (DI). The DI framework produces standardized data that are comparable across studies and variables. To show how the DI framework can be used to synthesize data, I analyzed published biochemical, physiological, and ecological trait data of hybrids and allopolyploids. I also apply key ecological and evolutionary concepts in hybrid and polyploid biology to translate nominal outcomes, including transgression, intermediacy, expansion, and contraction, in continuous DI space. Results: Biochemical, physiological, ecological, and evolutionary data can all be analyzed, visualized, and interpreted in the DI framework. The DI framework is particularly suited to standardize and compare variables with very different scales. When using the DI framework to understand niche divergence, a metric of niche overlap can be used to complement insights to centroid and breadth changes. Discussion: The DI framework is an accessible framework for hybrid and allopolyploid biology and represents a flexible and intuitive tool that can be used to reconcile outstanding problems in plant biodiversity research. [ABSTRACT FROM AUTHOR]

Quantifying assemblage variation across environmental gradients provides insight into the ecological and evolutionary mechanisms that differentiate assemblages locally within a larger climate regime. We assessed how vascular plant functional composition and diversity varied across microenvironment to identify ecological differences in assemblages in a mountainous fieldsite in northeastern Utah, USA. Then, we looked at how life‐history strategies and information about phylogenetic differences affect the relationship between functional metrics and environment. We found less functionally dispersed assemblages that were shorter and more resource‐conservative on south‐facing slopes where intra‐annual soil temperature was hotter and more variable. In contrast, we found more functionally dispersed assemblages, that were taller and more resource‐acquisitive on north‐facing slopes where intra‐annual temperature was cooler and less variable. Herbaceous and woody perennials drove these trends. Additionally, including information about phylogenetic differences in a dispersion metric indicated that phylogeny accounts for traits we did not measure. At this fieldsite, soil temperature acts as an environmental filter across aspect. If soil temperature increases and becomes more variable, intra‐annually, the function of north‐ versus south‐facing assemblages may be at risk for contrasting reasons. On south‐facing slopes, assemblages may not have the variance in functional diversity needed to respond to more intense, stressful conditions. Conversely, assemblages on north‐facing slopes may not have the resource‐conservative strategies needed to persist if temperatures become hotter and more variable intra‐annually. Given these results, we advocate for the inclusion of aspect differentiation in studies seeking to understand species and assemblage shifts in response to changing climate conditions. [ABSTRACT FROM AUTHOR]

The ascorbate‐glutathione pathway plays an essential role in the physiology of vascular plants, particularly in their response to environmental stresses. This pathway is responsible for regulating the cellular redox state, which is critical for maintaining cell function and survival under adverse conditions. To study the involvement of the alfalfa monodehydroascorbate reductase (MsMDHAR) in water stress processes, Arabidopsis thaliana plants constitutively expressing the sequence encoding MsMDHAR were developed. Transgenic events with low and high MsMDHAR expression and ascorbate levels were selected for further analysis of drought and waterlogging tolerance. Under water stress, Arabidopsis transgenic plants generated higher biomass, produced more seeds, and had larger roots than wild type ones. This higher tolerance was associated with increased production of waxes and chlorophyll a at the basal level, greater stomatal opening and stability in regulating the relative water content and reduced H2O2 accumulation under stress conditions in transgenic plants. Overall, these results show that MsMDHAR is involved in plant tolerance to abiotic stresses. The data presented here also emphasises the potential of the MsMDHAR enzyme as a plant breeding tool to improve water stress tolerance. [ABSTRACT FROM AUTHOR]

Human mitochondria contain a molybdoprotein capable of reducing amidoximes using cytochrome b5/cytochrome b5 reductase (Cb/CbR). This 'amidoxime reducing component' (ARC) also reduces nitrite to nitric oxide (NO). In the plant kingdom, distinct functions have been suggested for ARCs. Thus, the single ARC of Chlamydomonas reinhardtii (crARC) reduces nitrite to NO by taking electrons from nitrate reductase (NR). Therefore, it was proposed that a dual NR/crARC system can generate NO under physiological conditions and the crARC was renamed to 'NO‐forming nitrite reductase' (NOFNiR). In contrast to this, the two ARC enzymes from Arabidopsis thaliana were not found to produce NO in vitro at physiological nitrite concentrations, suggesting a different, as yet unknown, function in vascular plants. Here, we have investigated the two ARCs of Lotus japonicus (LjARCs) to shed light on this controversy and to examine, for the first time, the distribution of ARCs in plant tissues. The LjARCs are localized in the cytosol and their activities and catalytic efficiencies, which are much higher than those of A. thaliana, are consistent with a role as NOFNiR. LjARCs are prone to S‐nitrosylation in vitro by S‐nitrosoglutathione and this post‐translational modification drastically inhibits their activities. The enzymes are mainly expressed in flowers, seeds and pods, but are absent in nodules. LjARCs are active with NR and Cb/CbR as electron‐transferring systems. However, the LjNR mRNA levels in seeds and pods are negligible, whereas our proteomic analyses show that pods contain the two ARCs, Cb and CbR. We conclude that LjARCs may play a role as NOFNiR by receiving electrons from the Cb/CbR system but do not act in combination with NR. [ABSTRACT FROM AUTHOR]

Chlorophyll (Chl) plays a crucial role in photosynthesis, functioning as a photosensitizer. As an integral component of this process, energy absorbed by this pigment is partly emitted as red fluorescence. This signal can be readily imaged by fluorescence microscopy and provides a visualization of photosynthetic activity. However, due to limited resolution, signals cannot be assigned to specific subcellular/organellar membrane structures. By correlating fluorescence micrographs with transmission electron microscopy, researchers can identify sub‐cellular compartments and membranes, enabling the monitoring of Chl distribution within thylakoid membrane substructures in cyanobacteria, algae, and higher plant single cells. Here, we describe a simple and effective protocol for correlative light‐electron microscopy (CLEM) based on the autofluorescence of Chl and demonstrate its application to selected photosynthetic model organisms. Our findings illustrate the potential of this technique to identify areas of high Chl concentration and photochemical activity, such as grana regions in vascular plants, by mapping stacked thylakoids. [ABSTRACT FROM AUTHOR]

Questions: Plant cover values in vegetation plot data are bounded between 0 and 1, and cover is typically recorded in discrete classes with non‐equal intervals. Consequently, cover data are skewed and heteroskedastic, which hampers the application of conventional regression methods. Recently developed ordinal beta regression models consider these statistical difficulties. Our primary question is whether we can detect species trends in vegetation plot time series data with this modelling approach. A second question is whether trends in cover have additional value compared to trends in occurrence, which are easier to assess for practitioners. Location: The Netherlands, Western Europe. Methods: We used vegetation plot data collected from 10,000 fixed plots which were surveyed once every four years during 1999–2022. We used the ordinal zero‐augmented beta regression (OZAB) model, a hierarchical model consisting of a logistic regression for presence and an ordinal beta regression for cover. We adapted the OZAB model for longitudinal data and produced estimates of cover and occurrence for each four‐year period. Thereafter we assessed trends in cover and in occurrence across all periods. Results: We found evidence of a trend in cover in 318 out of the 721 species (44%) with sufficient data. Most species showed similar directional trends in occurrence and percent cover. No trend in occurrence was detected for 64 species that had evidence of a trend in cover. Declining species had stronger relative changes in cover than in occurrence. Conclusions: Our model enables researchers to detect trends in cover using longitudinal vegetation plot data. Cover trends often corroborated trends in occurrence, but we also regularly found trends in cover even in the absence of evidence for trends in occurrence. Our approach thus contributes to a more complete picture of (changes in) vegetation composition based on large monitoring data sets. [ABSTRACT FROM AUTHOR]

Questions: The alpine vegetation of the Alps is particularly vulnerable to climate change, as the temperature increase in this region is twice the global average and the available area for new colonisations decreases with increasing elevation. While numerous studies have investigated the response of vascular plants to a warming climate in the alpine belt, only a handful have investigated that of cryptogams in the European Alps. Based on a 21‐year monitoring project, we assessed the effects of climate change on cryptogams along elevation, from the treeline to the subnival belt. Location: Four GLORIA summits in Valais (Switzerland). Methods: Between 2001 and 2022, terricolous lichens and bryophytes (from 2008) were inventoried in 52 1‐m2 plots distributed across four summits: 2360 m a.s.l. (treeline), 2550 m (lower alpine), 2990 m (upper alpine) and 3210 m (subnival). Changes in species cover and richness were analysed using generalised linear mixed‐effects model (GLMMs). Results: For bryophytes, total cover remained stable overall. However, six species declined significantly between 2008 and 2022, and the species richness decreased after 2015. For terricolous lichens, total cover significantly increased on the lower alpine summit, while species richness increased on the upper alpine and subnival summits. Conclusions: Bryophytes have probably suffered from the increasingly dry conditions, with a succession of very warm and dry summers over the last decades. Terricolous lichens have taken advantage of the warmer conditions to increase their cover on the lower alpine summit, and new species have colonised the upper summits. However, as they compete with vascular plants for soil and light, they may suffer from shrub and tree encroachment in the future and will be limited upwards by the rarity of developed soils. The large topo‐climatic gradient (850 m) and the length of the time series suggest that similar trends are likely to be more widespread across the Alps. [ABSTRACT FROM AUTHOR]

Questions: Rapid climate change has profoundly altered the spatial distribution of terrestrial plants especially in arid and semi‐arid biomes. However, it remains poorly documented how climate shapes the current and future patterns of plant diversity within and across these vulnerable vegetation types. Location: Parts of Mongolia, southeastern Russia, and northern China (94.78°–126.78°E, 34.60°–54.27°N). Methods: Using a random forest model trained by a comprehensively compiled database on vascular plant species richness (i.e., the number of species within a defined plot area) and corresponding climate variables, soil conditions and vegetation types (forest, grassland, desert), we assessed the current pattern of vascular plant species richness across a typical forest–grassland–desert transect in East Asia. We further predicted future changes in vascular plant species richness under three climate scenarios (SSP1‐2.6, SSP3‐7.0, and SSP5‐8.5). Results: Vascular plant species richness generally showed a decrease from northeast to southwest across the transect, mainly explained by spatial variations in growing‐season precipitation and the minimum temperature of the coldest month. More than half of the transect area will likely experience a loss in vascular plant species richness in 2041–2070 under all three scenarios. The decrease in vascular plant species richness will likely occur in a smaller area under the low‐emission scenario (SSP1‐2.6). We also predict distinct changes in vascular plant species richness for different vegetation types, including a slight increase in forests but an overall decrease in both grasslands and deserts. Conclusions: Our findings suggest a dominant role of growing‐season precipitation in shaping the spatiotemporal patterns of vascular plant species richness across the forest–grassland–desert transect and highlight a risk of plant diversity loss in the regional dryland ecosystems in response to future climate change. [ABSTRACT FROM AUTHOR]

Dominant plants play crucial roles in supporting the functioning of terrestrial ecosystems. Plants can influence the spatial heterogeneity of environmental factors, as well as the spatial turnover in the composition of soil communities (i.e. β‐diversity of soil communities). However, we still poorly understand how dominant plants drive the spatial turnover in multiple ecosystem functions (β‐multifunctionality hereafter), and to which extent the effects of dominant plants are mediated by changes in environmental heterogeneity and the β‐diversity of soil communities.Antarctica supports one of the most challenging environments on the planet including low temperature and water availability. Here, we collected soil samples under three dominant plants (lichen, moss and vascular plants) and bare ground. We measured carbon storage, nutrient availability, nutrient decomposition, microbial biomass and pathogen control to calculate β‐multifunctionality.Both non‐vascular and vascular plants were associated with increased β‐multifunctionality compared to bare ground. We further showed that lichen mainly affected β‐multifunctionality through soil temperature heterogeneity and β‐bacterial diversity. Similarly, moss mainly affected β‐multifunctionality through the spatial heterogeneity of soil water content and β‐bacterial diversity. However, vascular plants did not significantly affect environmental heterogeneity. Instead, the responses of β‐multifunctionality to vascular plants were mainly driven by the β‐diversity of soil communities. These results indicate that environmental heterogeneity is important for turnover in multiple ecosystem functions in early successional stages (dominated by non‐vascular plants), while the importance of soil communities' heterogeneity becomes more significant in late successional stages (dominated by vascular plants).Synthesis. Our findings highlight the fundamental role of dominant plants in controlling the spatial turnover in ecosystem functions, and suggest that accelerated succession under current climate warming may increase bacterial β‐diversity but decrease abiotic heterogeneity, thereby leading to both increases (e.g. regarding functions related to microbial biomass) and decreases (e.g. regarding functions related to nutrient availability) in β‐multifunctionality and hence the spatial turnover in levels of ecosystem functioning. [ABSTRACT FROM AUTHOR]

Bauxite residue (BR) is a large volume by-product generated during bauxite smelting process and metal pollution problem is becoming increasingly prominent in residue areas. Accumulation and transfer of metals in six vascular plants were analyzed and soil environment was evaluated. Results found levels of Al (2,110–26,280 mg kg−1), Fe (990 to 9,880 mg kg−1), Ca (8,020 to 49,250 mg kg−1), Mg (2,060 to 17,190 mg kg−1), K (16,840 to 39,670 mg kg−1), and Ti (80 to 1,240 mg kg−1) in plants. Metal concentrations in soils exceeded background levels. Bioconcentration factor (BCF) found that Al, Fe, and Ti in plants (roots, stems, and leaves) were relatively depleted (BCF <1). Transfer factor (TF) of Al, Fe, Ca, K, and Ti in plants was distinctly higher than 1 and mainly concentrated in stems and leaves. Pollution indices revealed that soil environment was at moderated to serious contaminated risk. Principal components analysis (PCA) showed that Artemisia caruifolia Buch. and Siegesbeckia orientalis L. plants had a good ability to absorb Al and Fe, which can be used as biological indicators and restoration materials. Currently, soil environment was exposed to moderated to serious contaminated risk from Wachangping karst bauxite residue areas. Bioconcentration factor (BCF) analysis found that Al, Fe, and Ti in six vascular plants (roots, stems, and leaves) were relatively depleted (BCF <1). Transfer factor (TF) of Al, Fe, Ca, K, and Ti in vascular plants was distinctly higher than 1, which mainly concentrated in stems and leaves. PCA revealed that Artemisia caruifolia Buch. and Siegesbeckia orientalis L. plants had a good ability to absorb Al and Fe, which can be used as biological indicators and ecological restoration materials. [ABSTRACT FROM AUTHOR]

Lignin production marked a milestone in vascular plant evolution, and the emergence of syringyl (S) lignin is lineage specific. S-lignin biosynthesis in angiosperms, mediated by ferulate 5-hydroxylase (F5H, CYP84A1), has been considered a recent evolutionary event. F5H uniquely requires the cytochrome b5 protein CB5D as an obligatory redox partner for catalysis. However, it remains unclear how CB5D functionality originated and whether it coevolved with F5H. We reveal here the ancient evolution of CB5D-type function supporting F5H-catalyzed S-lignin biosynthesis. CB5D emerged in charophyte algae, the closest relatives of land plants, and is conserved and proliferated in embryophytes, especially in angiosperms, suggesting functional diversification of the CB5 family before terrestrialization. A sequence motif containing acidic amino residues in Helix 5 of the CB5 heme-binding domain contributes to the retention of CB5D function in land plants but not in algae. Notably, CB5s in the S-lignin–producing lycophyte Selaginella lack these residues, resulting in no CB5D-type function. An independently evolved S-lignin biosynthetic F5H (CYP788A1) in Selaginella relies on NADPH-dependent cytochrome P450 reductase as sole redox partner, distinct from angiosperms. These results suggest that angiosperm F5Hs coopted the ancient CB5D, forming a modern cytochrome P450 monooxygenase system for aromatic ring meta-hydroxylation, enabling the reemergence of S-lignin biosynthesis in angiosperms. Cytochrome b5 D, an electron donor supporting ferulate 5-hydroxylase–catalyzed syringyl lignin biosynthesis, arose in charophyte algae prior to terrestrialization and before the emergence of vascular plant ferulate 5-hydroxylases. [ABSTRACT FROM AUTHOR]

The ecological impact of non‐native species arises from their establishment in local assemblages. However, the rates of non‐native spread in new regions and their determinants have not been comprehensively studied. Here, we combined global databases documenting the occurrence of non‐native species and residence of non‐native birds, mammals, and vascular plants at regional and local scales to describe how the likelihood of non‐native occurrence and their proportion in local assemblages relate with their residence time and levels of human usage in different ecosystems. Our findings reveal that local non‐native occurrence generally increases with residence time. Colonization is most rapid in croplands and urban areas, while it is slower and variable in natural or semi‐natural ecosystems. Notably, non‐native occurrence continues to rise even 200 years after introduction, especially for birds and vascular plants, and in other land‐use types rather than croplands and urban areas. The impact of residence time on non‐native proportions is significant only for mammals. We conclude that the continental exchange of biotas requires considerable time for effects to manifest at the local scale across taxa and land‐use types. The unpredictability of future impacts, implied by the slow spread of non‐native species, strengthens the call for stronger regulations on the exchange of non‐native species to reduce the long‐lasting invasion debt looming on ecosystems' future. [ABSTRACT FROM AUTHOR]

Our research, which has yielded unique findings, is dedicated to the study of the dynamics of the number of flora species in a forest-protected area (Mordovia State Nature Reserve, European Russia) for the period 1936-2023. During this period, there was an increase in the number of species of both native (from 525 to 695 species) and alien (from 38 to 174 species) flora. Based on the above data, we conclude that the composition of the native flora of the MSNR is more than 99% identified. In the first years of the flora inventory, about 70% of the native flora is identified. The spectrum of families of the native flora of the MSNR has changed little over time. After the first inventory, the number of families in the flora does not add up to much (78 in 1936, 87 in 2023). There is mainly an increase in the number of identified genera in already known families and species within identified genera. In the spectrum of families of alien flora there are constant changes, new genera from different families, species within genera are added. The floristic data analysis revealed that the natural flora exhibited characteristics of a forest, despite the presence of a forest-steppe zone adjacent to the southern border of the MSNR. The primary indicators of systematic structure, composition of life forms, and ranges of species of native flora collectively indicate that the Mordovia State Nature Reserve forest area is situated within the natural zone of mixed (coniferousbroadleaved) forests. A comparison of long-term data from the MSNR flora study revealed that the process of formation of the alien flora of the MSNR, its structure, and chorological groups has not been completed yet. It will continue until the cultivation of plants from different continents and natural areas in protected areas is banned. [ABSTRACT FROM AUTHOR]

The Himalaya is known for its unique and rich endemic plants. Diversity of endemic plants is considered for prioritizing areas including delineating the Biodiversity Hotspots and conservation implications. In view of limited authentic dataset on endemic plants, the study investigated the diversity and distribution patterns of endemic vascular plants of Indian Himalayan Region (IHR) and recorded a total of 1076 endemic plant taxa including 1061 angiosperms, 03 gymnosperms and 12 pteridophytes belonging to 432 genera and 100 families. Richness of endemic plants was found maximum in the Arunachal Pradesh (294), followed by Meghalaya (213) and Sikkim (212). Maximum number of endemic taxa was found in family Orchidaceae (115) followed by Asteraceae (79) and Poaceae (63). More than 81% endemic are recorded in mid elevation (1001–1500 m) altitude range. Among the recorded taxa, 28 species of IUCN viz. Critically endangered (9), Endangered (13), and Vuln-erable (3) categories. Endemic taxa having narrow distribution range, high use-value and low population density were prioritized for conservation implications. Amentotaxus assamica, Gymnocladus assamicus, Ilex venulosa, Pittosporum eriocarpum are recorded highest threat categories due to timber harvesting, unsustainable harvesting of fruits, habitat destruction, large-scale lime quarrying etc. Total 1258 grid cells (15′ × 15′) representing IHR were analysed to identify the endemic rich areas in the region. Based on the set criterion, 20 endemic rich areas were identified and maximum congruence of endemics recorded in Eastern Himalaya. Of the total, 69% endemic rich areas were covered under the Protected Areas and Biosphere Reserve Networks, however, remaining 31% were unprotected. Further, the conservation related studies are available only for 7% (88) and 2% (29) are having the propagation protocols (tissue culture and seed germination). In view of importance of conservation of endemic plants, the study recommends location-specific population assessment, in-situ and ex-situ conservation approaches, climate and anthropogenic impacts, reproductive biology for identifying the bottleneck and improving germination are required, before vanishing the endemic plant assets in Himalaya. [ABSTRACT FROM AUTHOR]

Background and scopeThe growth of experimental studies of crassulacean acid metabolism (CAM) in diverse plant clades, coupled with recent advances in molecular systematics, presents an opportunity to re-assess the phylogenetic distribution and diversity of species capable of CAM. It has been more than two decades since the last comprehensive lists of CAM taxa were published, and an updated survey of the occurrence and distribution of CAM taxa is needed to facilitate and guide future CAM research. We aimed to survey the phylogenetic distribution of these taxa, their diverse morphology, physiology and ecology, and the likely number of evolutionary origins of CAM based on currently known lineages.Results and conclusionsWe found direct evidence (in the form of experimental or field observations of gas exchange, day-night fluctuations in organic acids, carbon isotope ratios and enzymatic activity) for CAM in 370 genera of vascular plants, representing 38 families. Further assumptions about the frequency of CAM species in CAM clades and the distribution of CAM in the Cactaceae and Crassulaceae bring the currently estimated number of CAM-capable species to nearly 7 % of all vascular plants. The phylogenetic distribution of these taxa suggests a minimum of 66 independent origins of CAM in vascular plants, possibly with dozens more. To achieve further insight into CAM origins, there is a need for more extensive and systematic surveys of previously unstudied lineages, particularly in living material to identify low-level CAM activity, and for denser sampling to increase phylogenetic resolution in CAM-evolving clades. This should allow further progress in understanding the functional significance of this pathway by integration with studies on the evolution and genomics of CAM in its many forms.

The Ukrainian Polissia is a distinctive region in terms of biodiversity, with a significant number of northern and boreal species and communities, as well as Central European species in the Western Polissia. The research region stretches from west to east for 750 km, and from north to south for 120–150 km. In the northeast direction, its territory gradually narrows to 50–80 km and constitutes a significant part of the important ecological corridor of Eastern Europe. Background. The natural conditions of the Ukrainian Polissia are favorable for the formation of coniferous, broadleaf and mixed forests, which are zonal communities here. The widespread distribution of fluvioglacial sediments causes the predominance of sandy sod-podzolic soils and associated pine forests. The high groundwater table and the low surface area contribute to the development of eutrophic peat bogs. All this leads to the formation of a diverse vegetation cover, which contributes to the representativeness and significant preservation of floristic and coenotic diversity. One of the key roles in the protection of rare species of phytodiversity in the Polissia region of Ukraine belongs to multifunctional protected areas, including the category of “regional landscape parks”. They cover more than 200 species of vascular plants of the Polissia region, with diffe­rent conservation statuses – from the international level of protection to the regional one. Materials and Methods. The study was conducted using conventional field (route-based, geobotanical descriptions of key areas) and desk methods. The species names are given according to the International Plant Names Index, and their belonging to the protected categories is based on the conservation criteria and protection levels accor­ding to the regulatory documents. Results and Discussion. The materials of the research of phytodiversity of five regional landscape parks (Prypiat-Stokhid, Nadsluchanskyi, Ptashynyy Rai, Mizhrichenskyi, Yalivshchyna), in particular rare species, are presented, as evidenced by their diversity, including a number of glacial relics, endemics and borderline species located at the southern or eastern border of the distribution area. Conclusions. The study has revealed that the rare vascular plant flora of the Polissia regional landscape parks is represented by 56 species included in the Red Data Book of Ukraine, 145 species under regional protection of three oblasts of the Polissia region, nine species from Appendix I of the Bern Convention, four species from Appendix II of CITES, and three species included in the European Red List. Two RLPs are the most sozologically representative in the study area: Nadsluchansky (six species of international protection statuses, 30 species of the Red Data Book of Ukraine, 107 species of regional protection level) and Mizhrichynsky (14 species with international protection statuses, 28 species of the Red Data Book of Ukraine, 51 species of regional protection level), which is determined by the peculiarity of natural conditions, habitat diversity and area of the territories. regional landscape parks as a category of nature reserve fund of regional status within the Polissia region of Ukraine cover most of the representative habitats, which include a corresponding number of rare species of different levels of protection, namely: forest (87 species), herbaceous (85 species), marsh (36 species) and aquatic (30 species) habitats.

This manuscript is the first contribution of the project, “Matela – uma ilha de biodiversidade” (“Matela - an island of biodiversity”), that aims to restore the native vegetation within the Azorean Protected Area of the Terceira Island Nature Park known as the "Protected Area for the Management of Habitats or Species of Matela" (TER08), situated on Terceira Island, the Azores Archipelago, Portugal. This small fragment of native forest, positioned at a low-medium altitude (300-400 m a.s.l.), is facing some conservation impacts as a consequence of the spread of different invasive exotic plant species, mainly Pittosporum undulatum, Rubus ulmifolius and Hedychium gardnerianum. The database we present encompasses diverse taxonomic groups, including bryophytes, vascular plants, arthropods, birds and mammals. It is derived from intensive sampling campaigns conducted in 2022, but some data from a previous vascular plant survey in 2015 were also included. The objective of this study was to provide an updated inventory of bryophytes, vascular plants, arthropods, birds and mammals within this protected area. In this way we are providing the reference conditions necessary for the monitoring of the impacts of the current ongoing restoration efforts within the project “Matela - an island of biodiversity”. Whenever feasible, the present inventory is juxtaposed with historical data from previous surveys conducted in Matela.In the realm of bryophytes, our analysis revealed the presence of 75 taxa, comprising 44 mosses and 32 liverworts. Amongst these, 71 were indigenous, while three remained indeterminate and one, Campylopus introflexus, was identified as invasive. A comparison with previous historical data revealed a decrease in species richness, which was partially counterbalanced by the discovery of 23 new recorded species in the area.Regarding vascular plants, we distinguished 54 species, comprising 28 indigenous and 26 introduced taxa. Almost 80% of the inventoried species (n = 43) were newly documented in Matela.The study of arthropods encompassed a total of 103 taxa. Within the realm of soil arthropods, we documented eight indigenous and 25 introduced taxa, witnessing the disappearance of endemic species alongside a substantial increase in introduced ones between 2002 and 2022. Canopy arthropods, totalling 36 indigenous and 18 introduced taxa, exhibited few changes when compared with data from 2002. SLAM traps captured 24 indigenous and 15 introduced arthropod taxa and no historical data are available for comparison.As for avian species, we noted 12 indigenous birds and one introduced species, confirming the presence of most of the historical recorded native species.The mammalian census revealed eight introduced species, setting new precedents for Matela, alongside the identification of one endemic species: the Azorean endemic bat Nyctalus azoreum.

Global patterns of leaf nitrogen (N) and phosphorus (P) stoichiometry have been interpreted as reflecting phenotypic plasticity in response to the environment, or as an overriding effect of the distribution of species growing in their biogeochemical niches. Here, we balance these contrasting views. We compile a global dataset of 36,413 paired observations of leaf N and P concentrations, taxonomy and 45 environmental covariates, covering 7,549 sites and 3,700 species, to investigate how species identity and environmental variables control variations in mass-based leaf N and P concentrations, and the N:P ratio. We find within-species variation contributes around half of the total variation, with 29%, 31%, and 22% of leaf N, P, and N:P variation, respectively, explained by environmental variables. Within-species plasticity along environmental gradients varies across species and is highest for leaf N:P and lowest for leaf N. We identified effects of environmental variables on within-species variation using random forest models, whereas effects were largely missed by widely used linear mixed-effect models. Our analysis demonstrates a substantial influence of the environment in driving plastic responses of leaf N, P, and N:P within species, which challenges reports of a fixed biogeochemical niche and the overriding importance of species distributions in shaping global patterns of leaf N and P. To assess drivers underpinning biogeographic patterns of leaf nitrogen and phosphorus stoichiometry, this study used a global dataset of leaf nitrogen and phosphorus concentrations of 3,625 species from 7,549 sites. They found strong within-species variation related to environmental gradients, challenging the idea of a fixed biogeochemical niche. [ABSTRACT FROM AUTHOR]

Introduction: Ferns constitute the second largest group of vascular plants. Previous studies have shown that the diversity and composition of fern communities are influenced by resource availability and water stress, among other factors. However, little is known about the influence of these environmental factors on their biotic interactions, especially regarding the relationship between mycorrhizal fungi and ferns. The present study compares the mycorrhizal communities associated with 36 populations of Struthiopteris spicant L. Weiss across Europe and North America. This species exhibits a great tolerance to variations in light, nutrient, and pH conditions, and it can survive with and without mycorrhizae. Methods: With the aim of determining which environmental factors impact the composition and abundance of the root-associated fungal communities in this species, we used an ITS-focused metabarcoding approach to identify the mycorrhizal fungi present and analyzed the influence of climatic and edaphic variables at global and regional scales Results and discussion: We encountered striking differences in the relative abundance of arbuscular mycorrhizal fungi (AMF) between S. spicant populations at both spatial levels. We recorded a total of 902 fungal ASVs, but only 2– 4% of the total fungal diversity was observed in each individual, revealing that each fern had a unique fungal community. Light availability and the interactive action of pH and soil nitrogen concentration showed a positive influence on AMF relative abundance, explaining 89% of the variance. However, environmental factors could only explain 4– 8% of the variability in AMF community composition, indicating that it might be determined by stochastic processes. These results support the hypothesis that ferns may be more independent of mycorrhization than other plant groups and interact with fungi in a more opportunistic manner. [ABSTRACT FROM AUTHOR]