1. Accurate determination of marker location within whole-brain microscopy images.
- Author
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Tyson AL, Vélez-Fort M, Rousseau CV, Cossell L, Tsitoura C, Lenzi SC, Obenhaus HA, Claudi F, Branco T, and Margrie TW
- Subjects
- Animals, Mice, Microscopy methods, Image Processing, Computer-Assisted methods, Brain diagnostic imaging, Brain metabolism
- Abstract
High-resolution whole-brain microscopy provides a means for post hoc determination of the location of implanted devices and labelled cell populations that are necessary to interpret in vivo experiments designed to understand brain function. Here we have developed two plugins (brainreg and brainreg-segment) for the Python-based image viewer napari, to accurately map any object in a common coordinate space. We analysed the position of dye-labelled electrode tracks and two-photon imaged cell populations expressing fluorescent proteins. The precise location of probes and cells were physiologically interrogated and revealed accurate segmentation with near-cellular resolution., (© 2022. The Author(s).)
- Published
- 2022
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