428 results on '"Utsunomiya University [Utsunomiya]"'
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2. ON TEMPORAL VARIATIONS OF THE MULTI-TeV COSMIC RAY ANISOTROPY USING THE TIBET III AIR SHOWER ARRAY
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Hotta, N [Faculty of Education, Utsunomiya University, Utsunomiya 321-8505 (Japan)]
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- 2010
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3. OBSERVATION OF TeV GAMMA RAYS FROM THE FERMI BRIGHT GALACTIC SOURCES WITH THE TIBET AIR SHOWER ARRAY
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Hotta, N [Faculty of Education, Utsunomiya University, Utsunomiya 321-8505 (Japan)]
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- 2010
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4. Alignment of swift cluster ions in high-energy-density plasma
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Claude Deutsch, Shigeo Kawata, Yanjun Gu, Utsunomiya University [Utsunomiya], Laboratoire de physique des gaz et des plasmas (LPGP), Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS), The Institute of Physics of the ASCR, and Institute of Plasma Physics of the CAS [Prague]
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Physics ,Nuclear and High Energy Physics ,Work (thermodynamics) ,Range (particle radiation) ,Radiation ,Context (language use) ,Plasma ,01 natural sciences ,010305 fluids & plasmas ,Ion ,Physics::Plasma Physics ,[PHYS.PHYS.PHYS-PLASM-PH]Physics [physics]/Physics [physics]/Plasma Physics [physics.plasm-ph] ,0103 physical sciences ,Cluster (physics) ,Atomic physics ,010306 general physics ,Inertial confinement fusion ,Beam (structure) ,ComputingMilieux_MISCELLANEOUS - Abstract
Unusual position exchange among ions constituting a swift cluster was found in a high-energy-density plasma. In this paper, the peculiar ion behavior appears in a Si cluster, moving with a speed of ~0.2c (c: speed of light) in a solid Al plasma in the context of the cluster-ion beam driven inertial confinement fusion (ICF). The ion position exchange behavior of cluster ions may influence the cluster-ion beam ICF (CIF) target structure design. In this paper we discuss a possibility of cluster-ion beams as the energy driver in CIF. In conclusions, the present work suggests that the following two points in CIF: (1) The unusual ion position exchange of the cluster ions would not induce a remarkable change in the ion stopping range in CIF targets, and (2) the swift cluster ions may not provide a significant vicinage effect on the stopping range.
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- 2020
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5. Observation of ion-acoustic shock wave transition due to enhanced Landau damping
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Saitou, Y [Department of Electrical and Electronic Engineering, Utsunomiya University, Utsunomiya, Toshigi 321-8585 (Japan)]
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- 2008
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6. The All-Particle Spectrum of Primary Cosmic Rays in the Wide Energy Range from 10{sup 14} to 10{sup 17} eV Observed with the Tibet-III Air-Shower Array
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Hotta, N [Faculty of Education, Utsunomiya University, Utsunomiya 321-8505 (Japan)]
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- 2008
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7. Soliton propagation in an inhomogeneous plasma at critical density of negative ions: Effects of gyratory and thermal motions of ions
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Kawata, Shigeo [Department of Electrical and Electronic Engineering, Utsunomiya University, Utsunomiya 321-8585 (Japan)]
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- 2007
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8. Creating contact points between empirical modelling and theoretical modelling in teacher education: The case of pendulum problem
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Kaneko, Masafumi, Saeki, Akihiko, Kawakami, Takashi, Naruto University of Education, Utsunomiya University [Utsunomiya], Utrecht University, Uffe Thomas Jankvist, Marja van den Heuvel-Panhuizen, Michiel Veldhuis, and Veldhuis, Michiel
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Mathematical modelling ,empirical modelling ,theoretical modelling ,[SHS.EDU]Humanities and Social Sciences/Education ,[SHS.EDU] Humanities and Social Sciences/Education ,[MATH] Mathematics [math] ,[MATH]Mathematics [math] ,teacher education - Abstract
International audience; Both empirical modelling (EM) and theoretical modelling (TM) are essential in mathematical modelling. This study explored how graduate students promoted teaching competencies for mathematical modelling by conducting EM and TM with the pendulum task. Through the analysis of modelling lessons, we found that the experiences of both EM and TM with the same material were important for the students to understand a modelling cycle and the aims and perspectives of modelling.
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- 2019
9. Compression of the multiple ion-acoustic soliton at the bottom of the space potential
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Nishida, Y [Department of Electrical and Electronic Engineering, Utsunomiya University, Utsunomiya, Tochigi 321 (Japan)]
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- 1997
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10. Large-amplitude pulse response at the plasma boundary in an ion-beam system
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Nishida, Y [Department of Electrical and Electronic Engineering, Utsunomiya University, Utsunomiya, Tochigi 321 (Japan)]
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- 1994
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11. Kadomtsev--Petviashivili equation for an ion-acoustic soliton in a collisionless weakly relativistic plasma with finite ion temperature
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Honzawa, T [Department of Electric and Electronic Engineering, Utsunomiya University, Utsunomiya 321 (Japan)]
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- 1993
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12. Refraction and reflection of ion acoustic solitons by space charge sheaths
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Nagasawa, T [Department of Electrical and Electronic Engineering, Utsunomiya University, Utsunomiya, Tochigi 321 (Japan)]
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- 1993
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13. Two-Photon Absorption Light-Induced Self-Written Waveguide for Single-Mode Optical Interconnection
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Okihiro Sugihara, Manabu Kagami, Daisuke Inoue, Chantal Andraud, Tatsuya Yamashita, Hidetaka Terasawa, Akari Kawasaki, F.S. Tan, Utsunomiya University [Utsunomiya], Toyota Central R&D Labs, Laboratoire de Chimie - UMR5182 (LC), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), and Université de Lyon-Université de Lyon-École normale supérieure - Lyon (ENS Lyon)-Institut de Chimie du CNRS (INC)
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Optical fiber ,Materials science ,Physics::Optics ,02 engineering and technology ,[CHIM.INOR]Chemical Sciences/Inorganic chemistry ,010402 general chemistry ,01 natural sciences ,Two-photon absorption ,Waveguide (optics) ,law.invention ,law ,Fiber laser ,Insertion loss ,Absorption (electromagnetic radiation) ,Interconnection ,business.industry ,[CHIM.ORGA]Chemical Sciences/Organic chemistry ,Single-mode optical fiber ,[CHIM.CATA]Chemical Sciences/Catalysis ,[CHIM.MATE]Chemical Sciences/Material chemistry ,021001 nanoscience & nanotechnology ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Optoelectronics ,0210 nano-technology ,business - Abstract
International audience; We propose two-photon absorption light-induced self-written (LISW) waveguide formation using short-wavelength infrared pulse laser light. It is suitable and efficient for single-mode optical interconnection, and also promising for small-core single-mode optical interconnection. The approach offers the possibility of not only decreasing the insertion loss, but also reducing the interconnection task time. We assessed this approach for single-mode optical interconnection. We obtained an LISW waveguide loss of about 0.06 dB for an LISW waveguide length of 100 μm and a connection loss per facet of about 0.37 dB. We also presented the results on the interconnection between high-numerical-aperture small-core thermally-diffused expanded-core single-mode fibers having the mode field diameters of about 3 μm by using the same approach. The results showed the present approach to be a promising alternative route for efficient interconnection of small-core single-mode optical devices, such as silicon nanowires with appropriate configurations.
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- 2018
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14. Search for the H dibaryon in ( K sup minus , K sup + ) reactions
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Yoon, C [Department of Physics, Kyoto University, Kyoto (Japan) Department of Physics, Nagoya University, Nagoya (Japan) KEK, National Laboratory for High Energy Physics, Tsukuba (Japan) Department of Physics, Toho University, Funabashi (Japan) Kobe University, Kobe (Japan) Faculty of Education, Utsunomiya University, Utsunomiya (Japan) Institute for Nuclear Study, University of Tokyo, Ta]
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- 1990
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15. Self-modulation of low-frequency oscillations in a plasma
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Honzawa, T [Department of Electric Engineering Department of Electronic Engineering, Utsunomiya University, Utsunomiya 321, Japan (JP)]
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- 1990
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16. Comparative analysis of the tubulin cytoskeleton organization in nodules ofMedicago truncatulaandPisum sativum: bacterial release and bacteroid positioning correlate with characteristic microtubule rearrangements
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Igor A. Tikhonovich, Antonius C.J. Timmers, Anna B. Kitaeva, Viktor E. Tsyganov, Kirill N. Demchenko, Laboratory of Molecular and Cellular Biology, Utsunomiya University [Utsunomiya], Komarov Botanical Institute RAS, Saint Petersburg State University (SPBU), Laboratoire des interactions plantes micro-organismes (LIPM), Institut National de la Recherche Agronomique (INRA)-Centre National de la Recherche Scientifique (CNRS), Russian Fund for Basic Research [13-04-40344-H], Russian Science Foundation [14-24-00135], and Russian Federation [HIII-4603.2014.4]
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0106 biological sciences ,0301 basic medicine ,Cytoskeleton organization ,Physiology ,[SDV]Life Sciences [q-bio] ,Meristem ,Sinorhizobium ,Plant Science ,Endoplasmic Reticulum ,Microtubules ,Models, Biological ,01 natural sciences ,Polymerization ,Pisum ,03 medical and health sciences ,Tubulin ,Microtubule ,Nitrogen Fixation ,tubulin cytoskeleton ,Medicago truncatula ,Botany ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,nodulation ,Cytoskeleton ,microtubules (MTs) ,biology ,Pisum sativum (pea) ,Endoplasmic reticulum ,Peas ,food and beverages ,biology.organism_classification ,symbiosis ,Cell biology ,cell differentiation ,030104 developmental biology ,Medicago truncatula (barrel medic) ,Cytoplasm ,biology.protein ,Root Nodules, Plant ,010606 plant biology & botany - Abstract
International audience; In this study we analyzed and compared the organization of the tubulin cytoskeleton in nodules of Medicago truncatula and Pisum sativum. We combined antibody labeling and green fluorescent protein tagging with laser confocal microscopy to observe microtubules (MTs) in nodules of both wild-type (WT) plants and symbiotic plant mutants blocked at different steps of nodule development. The 3D MT organization of each histological nodule zone in both M. truncatula and P. sativum is correlated to specific developmental processes. Endoplasmic MTs appear to support infection thread growth, infection droplet formation and bacterial release into the host cytoplasm in nodules of both species. No differences in the organization of the MT cytoskeleton between WT and bacterial release mutants were apparent, suggesting both that the phenotype is not linked to a defect in MT organization and that the growth of hypertrophied infection threads is supported by MTs. Strikingly, bacterial release coincides with a change in the organization of cortical MTs from parallel arrays into an irregular, crisscross arrangement. After release, the organization of endoplasmic MTs is linked to the distribution of symbiosomes. The 3D MT organization of each nodule histological zone in M. truncatula and P. sativum was analyzed and linked to specific developmental processes.
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- 2015
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17. Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes
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Štefan Janeček, Rohan J. Williams, Geoff Pincher, Darrell Cockburn, Gurvan Michel, Wataru Saburi, David R. Rose, Brian P. Rempel, Glyn R. Hemsworth, Wim Van den Ende, Jerry Ståhlberg, Leila LoLeggio, Tom Wennekes, Kiyohiko Igarashi, Cedric Montanier, Etienne Rebuffet, Naotake Konno, Harry J. Gilbert, Markus Linder, Ed Bayer, Tirso Pons, Jan-Hendrik Hehemann, Tomomi Sumida, Thierry Fontaine, Takane Katayama, Elizabeth Ficko-Blean, Florence Vincent, Zui Fujimoto, Masafumi Hidaka, Kyle Robinson, Ana R. Luís, Yuichi Sakamoto, Bernard Henrissat, Gustav Vaaje-Kolstad, Jens M. Eklöf, Ian R. Greig, Harry Brumer, Ryuichiro Suzuki, Mats Sandgren, Takashi Tonozuka, Ryszard Brzezinski, Brian L. Mark, Bareket Dassa, Haruhide Mori, Junho Lee, Vivian L. Y. Yip, Birte Svensson, Wade Abbott, Alfons K. G. Felice, Juha Rouvinen, Takayuki Ohnuma, Satoshi Kaneko, Franz J. St John, Ramon Hurtado-Guerrero, Pedro M. Coutinho, Sine Larsen, Gideon J. Davies, Yuval Shoham, Kiyotaka Fujita, Warren W. Wakarchuk, Fathima Aidha Shaikh, Alisdair B. Boraston, Breeanna R. Urbanowicz, Vincent G. H. Eijsink, Daniel Kracher, Beatrice Cobucci-Ponzano, Ethan D. Goddard-Borger, Anthony J. Clarke, David J. Vocadlo, Katsuro Yaoi, Seino A. K. Jongkees, Anna A. Kulminskaya, Roland Ludwig, Mirko M. Maksimainen, Magali Remaud-Simeon, Edward J. Taylor, Motomitsu Kitaoka, Spencer J. Williams, Shinya Fushinobu, Marco Moracci, David Wilson, Richard McLean, Toki Taira, Jean-Guy Berrin, Ran Zhang, Hiroyuki Nakai, Tracey M. Gloster, Peter J. Reilly, Wim Nerinckx, Takuya Ishida, Alicia Lammerts van Bueren, Orly Alber, Mirjam Czjzek, Kathleen Piens, Annabelle Varrot, Stephen G. Withers, Nathalie Juge, Maxime Versluys, Gerlind Sulzenbacher, Richard W. Pickersgill, Michael D. L. Suits, Agriculture and Agri-Food [Ottawa] (AAFC), Weizmann Institute of Science [Rehovot, Israël], Laboratoire d'Ingénierie des Systèmes Biologiques et des Procédés (LISBP), Institut National de la Recherche Agronomique (INRA)-Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Centre National de la Recherche Scientifique (CNRS), University of Victoria [Canada] (UVIC), University of British Columbia, Université de Sherbrooke (UdeS), University of Guelph, National Research Council (CNR), Pennsylvania State University (Penn State), Penn State System, Aix Marseille Université (AMU), Laboratoire de Biologie Intégrative des Modèles Marins (LBI2M), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Sorbonne Université (SU), University of York, Norwegian University of Life Sciences (NMBU), University of Vienna [Vienna], University of Adelaide, Institut Pasteur [Paris], National Agriculture and Food Research Organization (NARO), Kagoshima University, University of Tokyo, Newcastle University, University of St Andrews [Scotland], The Walter and Eliza Hall Institute of Medical Research (WEHI), Simon Fraser University (SFU.ca), Max Planck Institute for Marine Microbiology, Max-Planck-Gesellschaft, University of Leeds, University of Zaragoza - Universidad de Zaragoza [Zaragoza], Slovak Academy of Sciences (SAS), Quadram Institute, University of the Ryukyus [Okinawa], Ishikawa Prefectural University, Utsunomiya University [Utsunomiya], St Petersburg Nuclear Physics Institute, University of Groningen, Aalto University, University of Copenhagen = Københavns Universitet (KU), University of Lisbon, University of Oulu, University of Manitoba [Winnipeg], University of Lethbridge, Hokkaido University [Sapporo, Japan], Niigata University, Ghent University, Kinki University, Queen Mary University of London (QMUL), Sveriges lantbruksuniversitet, National Center for Biotechnology, Centre de Recherche en Cancérologie de Marseille (CRCM), Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut Paoli-Calmettes, Fédération nationale des Centres de lutte contre le Cancer (FNCLCC)-Fédération nationale des Centres de lutte contre le Cancer (FNCLCC)-Aix Marseille Université (AMU), Iowa State University (ISU), Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA), University of Waterloo [Waterloo], University of Eastern Finland, Iwate Biotechnology Research Center (IBRC), Technion - Israel Institute of Technology [Haifa], United States Department of Agriculture, Wilfrid Laurier University (WLU), Architecture et fonction des macromolécules biologiques (AFMB), Centre National de la Recherche Scientifique (CNRS)-Aix Marseille Université (AMU)-Institut National de la Recherche Agronomique (INRA), Institut National de la Recherche Agronomique (INRA), RIKEN - Institute of Physical and Chemical Research [Japon] (RIKEN), Akita University, Danmarks Tekniske Universitet (DTU), University of Lincoln, Tokyo University of Agriculture and Technology (TUAT), Univ Georgia, University of Georgia [USA], Université Catholique de Louvain = Catholic University of Louvain (UCL), Centre de Recherches sur les Macromolécules Végétales (CERMAV ), Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019]), Université Grenoble Alpes [2016-2019] (UGA [2016-2019]), Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Ryerson University, Utrecht University [Utrecht], University of Melbourne, Cornell University [New York], National Institute of Advanced Industrial Science and Technology (AIST), Natural Sciences and Engineering Research Council of Canada (NSERC), Agriculture and Agri-Food (AAFC), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS), Institut Pasteur [Paris] (IP), Biotechnology and Biological Sciences Research Council (BBSRC), University of Copenhagen = Københavns Universitet (UCPH), Universidade de Lisboa = University of Lisbon (ULISBOA), Universiteit Gent = Ghent University (UGENT), Aix Marseille Université (AMU)-Institut Paoli-Calmettes, Fédération nationale des Centres de lutte contre le Cancer (FNCLCC)-Fédération nationale des Centres de lutte contre le Cancer (FNCLCC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Institut National des Sciences Appliquées (INSA)-Université de Toulouse (UT), Institut National de la Recherche Agronomique (INRA)-Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS), Danmarks Tekniske Universitet = Technical University of Denmark (DTU), Weizmann Institute of Science, Centre National de la Recherche Scientifique (CNRS)-Institut National des Sciences Appliquées - Toulouse (INSA Toulouse), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut National de la Recherche Agronomique (INRA), University of Victoria, Sherbrooke University, Sorbonne Universités, University of Vienna, National Agriculture and Food Research Organization, University of St Andrews, Walter and Eliza Hall Institute of Medical Research (WEHI), Slovak Academy of Sciences, Utsunomiya University, Hokkaido University, Iwate Biotechnol Res Ctr, Technion – Israel Institute of Technology, Akita Prefectural University, Université Catholique de Louvain (UCL), Centre de Recherches sur les Macromolécules Végétales (CERMAV), Université Joseph Fourier - Grenoble 1 (UJF)-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes (UGA), Université Grenoble Alpes (UGA), Cornell University, Laboratoire Départemental Vétérinaire et d'Hygiène Alimentaire des Hautes Alpes, and Moracci, M
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0301 basic medicine ,History ,Carbohydrate ,CAZy ,Bioinformatics ,[SDV]Life Sciences [q-bio] ,030106 microbiology ,Polysaccharide-Lyases ,Glycobiology ,Carbohydrates ,Glycosyltransferases/chemistry ,Computational biology ,Biology ,Esterase ,Biochemistry ,History, 21st Century ,Databases ,03 medical and health sciences ,glycobiology ,Esterases/chemistry ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Carbohydrates/chemistry ,Glycoscience ,Databases, Protein ,ComputingMilieux_MISCELLANEOUS ,bioinformatic ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,Protein ,Polysaccharide-Lyases/chemistry ,biocuration ,Esterases ,glycoscience ,Glycosyltransferases ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,bioinformatics ,21st Century ,Biocuration ,[SDV.BBM.BP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biophysics ,030104 developmental biology ,carbohydrate-active enzymes ,Encyclopedia ,Carbohydrate-active enzymes ,carbohydrate-active enzyme ,Carbohydrate active enzymes ,Glycosyltransferase - Abstract
CAZypedia was initiated in 2007 to create a comprehensive, living encyclopedia of the carbohydrate-active enzymes (CAZymes) and associated carbohydrate-binding modules involved in the synthesis, modification, and degradation of complex carbohydrates. CAZypedia is closely connected with the actively-curated CAZy database, which provides a sequence-based foundation for the biochemical, mechanistic, and structural characterization of these diverse proteins. Now celebrating its 10th anniversary online, CAZypedia is a successful example of dynamic, community-driven, and expert-based biocuration. CAZypedia is an open-access resource available at URL http://www.cazypedia.org.
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- 2018
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18. Light-induced self-written waveguide fabrication using 1550 nm laser light
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Okihiro Sugihara, Chantal Andraud, Hidetaka Terasawa, Akari Kawasaki, Manabu Kagami, Yann Bretonnière, Daisuke Inoue, Olivier Maury, F.S. Tan, Tatsuya Yamashita, Utsunomiya University [Utsunomiya], Toyota Central R&D Labs, Laboratoire de Chimie - UMR5182 (LC), École normale supérieure de Lyon (ENS de Lyon)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), and Université de Lyon-Université de Lyon-École normale supérieure - Lyon (ENS Lyon)-Institut de Chimie du CNRS (INC)
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Optical fiber ,Materials science ,02 engineering and technology ,[CHIM.INOR]Chemical Sciences/Inorganic chemistry ,01 natural sciences ,Waveguide (optics) ,law.invention ,010309 optics ,Optics ,Fiber Bragg grating ,law ,Fiber laser ,0103 physical sciences ,Plastic optical fiber ,Distributed feedback laser ,Silicon photonics ,business.industry ,[CHIM.ORGA]Chemical Sciences/Organic chemistry ,Microstructured optical fiber ,[CHIM.CATA]Chemical Sciences/Catalysis ,[CHIM.MATE]Chemical Sciences/Material chemistry ,021001 nanoscience & nanotechnology ,Atomic and Molecular Physics, and Optics ,Optoelectronics ,0210 nano-technology ,business - Abstract
International audience; Light-induced self-written (LISW) optical waveguides were fabricated for the first time, to the best of our knowledge, using a photopolymerizable resin system formed by 1550 nm pulse laser light. A two-photon absorption (TPA) chromophore with a TPA cross section of several hundred Goeppert-Mayer (GM) at 1550 nm was used. Furthermore, the optical interconnection between a single-mode fiber and a fiber Bragg grating was demonstrated by the present technique, using one-way irradiation of 1550 nm laser light through the single-mode fiber. The LISW waveguide formation using 1550 nm laser light offers a new and promising alternative route for optical interconnection in silicon photonics technology.
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- 2017
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19. Strigolactones regulate protonema branching and act as a quorum sensing-like signal in the moss Physcomitrella patens
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Helene Proust, Beate Hoffmann, Kaori Yoneyama, Catherine Rameau, Xiaonan Xie, Fabien Nogué, Didier G. Schaefer, Koichi Yoneyama, Institut Jean-Pierre Bourgin (IJPB), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Weed Sci Ctr, Utsunomiya University, Inst Biol, Lab Cell & Mol Biol, Université de Neuchâtel (UNINE), Ministere de l'Education Nationale, de la Recherche et de la Technologie (MENRT), ANR (Agence Nationale de la Recherche) [ANR.05.BLAN.0262], KAKANHI [18208010, 2109111], Program for Promotion of Basic and Applied Researches for Innovations in Bio-oriented Industry, and Utsunomiya University [Utsunomiya]
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COMPARATIVE GENOMICS ,[SDV.SA]Life Sciences [q-bio]/Agricultural sciences ,0106 biological sciences ,GENES ,Physcomitrella ,Mutant ,Strigolactone ,RESISTANT MUTANTS ,Physcomitrella patens ,01 natural sciences ,Dioxygenases ,ARBUSCULAR MYCORRHIZAL FUNGI ,Lactones ,03 medical and health sciences ,Botany ,LAND PLANTS ,MARCHANTIA-POLYMORPHA L ,Protonema ,Molecular Biology ,Phylogeny ,Plant Proteins ,030304 developmental biology ,Strigolactones ,0303 health sciences ,biology ,Quorum Sensing ,food and beverages ,Plants, Genetically Modified ,CCD8 ,AM FUNGI ,biology.organism_classification ,Bryopsida ,TRANSFORMATION ,EVOLUTION ,Karrikin ,Quorum sensing ,Ectopic expression ,PARASITIC PLANTS ,Signal Transduction ,010606 plant biology & botany ,Developmental Biology - Abstract
Strigolactones are a novel class of plant hormones controlling shoot branching in seed plants. They also signal host root proximity during symbiotic and parasitic interactions. To gain a better understanding of the origin of strigolactone functions, we characterised a moss mutant strongly affected in strigolactone biosynthesis following deletion of the CAROTENOID CLEAVAGE DIOXYGENASE 8 (CCD8) gene. Here, we show that wild-type Physcomitrella patens produces and releases strigolactones into the medium where they control branching of protonemal filaments and colony extension. We further show that Ppccd8 mutant colonies fail to sense the proximity of neighbouring colonies, which in wild-type plants causes the arrest of colony extension. The mutant phenotype is rescued when grown in the proximity of wild-type colonies, by exogenous supply of synthetic strigolactones or by ectopic expression of seed plant CCD8. Thus, our data demonstrate for the first time that Bryophytes (P. patens) produce strigolactones that act as signalling factors controlling developmental and potentially ecophysiological processes. We propose that in P. patens, strigolactones are reminiscent of quorum-sensing molecules used by bacteria to communicate with one another.
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- 2011
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20. Ryecyanatines A and B and ryecarbonitrilines A and B, substituted cyanatophenol, cyanatobenzo[1,3]dioxole, and benzo[1,3]dioxolecarbonitriles from rye (Secale cereale L.) root exudates: Novel metabolites with allelopathic activity on Orobanche seed germination and radicle growth
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Antonio Evidente, Diego Rubiales, Mónica Fernández-Aparicio, Fabiana Avolio, Koichi Yoneyama, Alessio Cimmino, Compagnia di San Paolo, European Commission, Japan Society for the Promotion of Science, Dipartimento di Scienze Chimiche, Università degli studi di Catania [Catania], Agroécologie [Dijon], Institut National de la Recherche Agronomique (INRA)-Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, Utsunomiya University [Utsunomiya], Instituto de Agricultura Sostenible - Institute for Sustainable Agriculture (IAS CSIC), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), UNINA - Italy, Compagnia di San Paolo - Italy, FP7-ARIMNet-MEDILEG, European Union [13390], Marie-Curie FP7 COFUND People Programme [COFUND-GA-2010-267196], European Project: 219262,EC:FP7:KBBE,FP7-ERANET-2007-RTD,ARIMNET(2008), Cimmino, Alessio, M?nica Fern?ndez, Aparicio, Fabiana, Avolio, Koichi, Yoneyama, Diego, Rubiale, Evidente, Antonio, and Università degli studi di Catania = University of Catania (Unict)
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Secale ,[SDV]Life Sciences [q-bio] ,Plant Exudates ,Ryecyanatines A and B ,Plant Weeds ,Germination ,Plant Science ,Horticulture ,Orobanche crenata ,Root exudates ,Biochemistry ,Plant Roots ,Pheromones ,Seed germination/inhibition ,Phenols ,Botany ,Nitriles ,Radicle ,Secale cereale ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,Parasitic weeds ,Benzodioxoles ,Molecular Biology ,Allelopathy ,2. Zero hunger ,biology ,Molecular Structure ,Parasitic weed ,Herbicides ,Orobanche ,Root exudate ,General Medicine ,Ryecarbonitrilines A and B ,biology.organism_classification ,3. Good health ,Seedling ,Orobanche minor ,[SDE]Environmental Sciences ,Seeds - Abstract
Orobanche and Phelipanche species (the broomrapes) are root parasitic plants, some of which represent serious weed problems causing heavy yield losses on important crops. Current control relies on the use of certain agronomic practices, resistant crop varieties, and herbicides, albeit success has been marginal. Agronomic practices such as the use of allelopathic species in intercropping or cover crops, or the use of direct seedling over residues of allelopathic species incorporate the principle of allelopathy exerted by molecules exuded from roots or released by crop residues to control broomrapes. In addition, the isolation of natural substances from root exudates of plants with potential to inhibit broomrape development opens the door to the design of new herbicides based on natural and benign sources. Ryecyanatines A and B and ryecarbonitrilines A and B, the first new substituted cyanatophenol, substituted cyanatobenzo[1,3]dioxole, and the latter two new substituted benzo[1,3]dioxolecarbonitriles were isolated from rye (Secale cereale L.) root exudates. They were characterized as 4-cyanato-2-methoxyphenol, 2-cyanato-benzo[1,3]dioxole, 2-methoxybenzo[1,3]dioxole-5-carbonitrile and benzo[1,3]dioxole-2-carbonitrile by spectroscopic (essentially NMR and HRESI MS spectra) methods. These compounds were investigated for allelopathic activity on Orobanche germination and development. Ryecarbonitriline A induced germination of Orobanche cumana seeds, and this germination can be considered as suicidal because O. cumana does not parasite rye roots and cannot survive without host resources beyond germination stage. In addition, ryecyanatine A promotes a rapid cessation of O. cumana, Orobanche crenata and Orobanche minor radicle growth with the promotion of a layer of papillae at the radicle tip in O. cumana and O. crenata hampering the contact of the parasite to the host. Ryecarbonitriline B also displayed the same activity although being less active than ryecyanatine A and mainly restricted to O. cumana., This research was carried out in part in the frame of Programme STAR, financially supported by UNINA – Italy and Compagnia di San Paolo – Italy and in part by project FP7-ARIMNet-MEDILEG. This work was carried out within the COST ACTION FA1206 Strigolactones: biological roles and applications. Mónica Fernández-Aparicio has received the support of the Japan Society for the Promotion of Science Postdoctoral Fellowship ID noP 13390 and from the European Union, in the framework of the Marie-Curie FP7 COFUND People Programme, through the award of an AgreenSkills’ fellowship (under grant agreement noP COFUND-GA-2010-267196).
- Published
- 2015
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21. Vibration Amplitude - Dependent Natural Frequency and Damping Ratio of Repaired Pier Model
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AlSehnawi, Reem, Nakajima, Akinori, Takeshima, Ryuji, Al Sadeq, Hafez, Jaigu, Anne, Le Cam, Vincent and Mevel, Laurent and Schoefs, Franck, Utsunomiya University [Utsunomiya], IHI Infrastructure Systems Co., Ltd., Damascus University, IFFSTTAR, Inria, Université de Nantes, Le Cam, Vincent and Mevel, Laurent and Schoefs, and Franck
- Subjects
FFT based methods ,Structural simulation ,[MATH.MATH-ST]Mathematics [math]/Statistics [math.ST] ,[STAT.TH] Statistics [stat]/Statistics Theory [stat.TH] ,[PHYS.MECA]Physics [physics]/Mechanics [physics] ,[STAT.TH]Statistics [stat]/Statistics Theory [stat.TH] ,Damage assessment ,[SPI.MECA]Engineering Sciences [physics]/Mechanics [physics.med-ph] ,[PHYS.MECA] Physics [physics]/Mechanics [physics] ,[SPI.MECA] Engineering Sciences [physics]/Mechanics [physics.med-ph] ,[MATH.MATH-ST] Mathematics [math]/Statistics [math.ST] - Abstract
International audience; The present work aims to investigate the dependency of dynamic characteristics such as the natural frequency and the damping ratio of pier model on the vibration amplitude under a series of different vibration levels. Several free vibration tests with a wide range of amplitudes were, therefore, carried out under excitation with relatively small amplitude levels. The pier model was subjected to a progressive damage by conducting a shaking table test to study the influence of different damage scenarios on its dynamic characteristics. After the damage occurs at the plastic hinge zone of the pier model, free vibration tests with different amplitude excitation were carried out to derive the dynamic characteristics of the damaged pier model. Furthermore, after the damage of the pier model was repaired by carbon fiber sheets (CFS) jacketing, free vibration test was carried out again, to derive the dynamic characteristics of the repaired pier model. Generally, this study indicates that overall natural frequency and damping ratio are very sensitive to vibration amplitude level. Particularly, whenever the acceleration amplitude increases, damping ratio significantly increases while natural frequency slightly decreases. Also, the repairing method by CFS proved to be effective in restoring performance characteristics of damaged pier.
- Published
- 2014
22. Germination Stimulants of Phelipanche ramosa in the Rhizosphere of Brassica napus Are Derived from the Glucosinolate Pathway
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Koichi Yoneyama, Karinne Pouponneau, Bathilde Auger, Jean-Bernard Pouvreau, Grégory Montiel, Bruno Le Bizec, Régine Delourme, Philippe Simier, Philippe Delavault, Kaori Yoneyama, UFR Sci & Tech, SFR QUASAV 4207, Lab Biol & Pathol Vegetales, PRES Université Nantes Angers Le Mans (UNAM), Weed Sci Ctr, Utsunomiya University, Institut de Génétique, Environnement et Protection des Plantes (IGEPP), Institut National de la Recherche Agronomique (INRA)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-AGROCAMPUS OUEST, Japan Ministry of Education, Science and Culture (KAKENHI) [22-9996], Japan Society for the Promotion of Science (JSPS), Laboratoire de biologie et pathologie végétales (LBPV), Université de Nantes - UFR des Sciences et des Techniques (UN UFR ST), Université de Nantes (UN)-Université de Nantes (UN), École nationale vétérinaire, agroalimentaire et de l'alimentation Nantes-Atlantique (ONIRIS), Utsunomiya University [Utsunomiya], Université de Rennes (UR)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro Rennes Angers, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), and Institut National de la Recherche Agronomique (INRA)-Université de Rennes (UR)-AGROCAMPUS OUEST
- Subjects
0106 biological sciences ,Physiology ,[SDV]Life Sciences [q-bio] ,Brassica ,Arabidopsis ,STRIGOLACTONES ,Plant Weeds ,01 natural sciences ,Plant Roots ,ARBUSCULAR MYCORRHIZAL FUNGI ,chemistry.chemical_compound ,Lactones ,Isothiocyanates ,Arabidopsis thaliana ,0303 health sciences ,Rhizosphere ,biology ,food and beverages ,General Medicine ,[SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanics ,Germination ,Seeds ,OROBANCHE ,Plant Exudates ,Glucosinolates ,Gas Chromatography-Mass Spectrometry ,Dioxygenases ,Host-Parasite Interactions ,03 medical and health sciences ,Structure-Activity Relationship ,Orobanchaceae ,Botany ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,030304 developmental biology ,MYROSINASE ACTIVITY ,Host (biology) ,Arabidopsis Proteins ,Brassica napus ,SESQUITERPENE LACTONES ,SEED-GERMINATION ,biology.organism_classification ,BROOMRAPE ,[SDV.BV.PEP]Life Sciences [q-bio]/Vegetal Biology/Phytopathology and phytopharmacy ,HELIANTHUS-ANNUUS ,Orobanche ,chemistry ,Glucosinolate ,Mutation ,ARABIDOPSIS-THALIANA ,ROOT PARASITIC PLANTS ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,Weed ,Agronomy and Crop Science ,010606 plant biology & botany - Abstract
International audience; Phelipanche ramosa is a major parasitic weed of Brassica napus. The first step in a host-parasitic plant interaction is stimulation of parasite seed germination by compounds released from host roots. However, germination stimulants produced by B. napus have not been identified yet. In this study, we characterized the germination stimulants that accumulate in B. napus roots and are released into the rhizosphere. Eight glucosinolate-breakdown products were identified and quantified in B. napus roots by gas chromatography–mass spectrometry. Two (3-phenylpropanenitrile and 2-phenylethyl isothiocyanate [2-PEITC]) were identified in the B. napus rhizosphere. Among glucosinolate-breakdown products, P. ramosa germination was strongly and specifically triggered by isothiocyanates, indicating that 2-PEITC, in particular, plays a key role in the B. napus–P. ramosa interaction. Known strigolactones were not detected by ultraperformance liquid chromatography–tandem mass spectrometry, and seed of Phelipanche and Orobanche spp. that respond to strigolactones but not to isothiocyanates did not germinate in the rhizosphere of B. napus. Furthermore, both wild-type and strigolactone biosynthesis mutants of Arabidopsis thaliana Atccd7 and Atccd8 induced similar levels of P. ramosa seed germination, suggesting that compounds other than strigolactone function as germination stimulants for P. ramosa in other Brassicaceae spp. Our results open perspectives on the high adaptation potential of root-parasitic plants under host-driven selection pressures.
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- 2012
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23. Vegetation Interaction Game: Digital SUGOROKU of Vegetation Succession for Children
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Etsuji Yamaguchi, Akiko Deguchi, Fusako Kusunoki, Yoshiaki Takeda, Shigenori Inagaki, Masanori Sugimoto, Faculty of Education, Utsunomiya University [Utsunomiya], Graduate School of Human Development and Environment, Kobe University, Faculty of Art and Design, Tama Art University, Graduate School of Engineering [The Univ of Tokyo] (UTokyo), The University of Tokyo (UTokyo), Hyun Seung Yang, Rainer Malaka, Junichi Hoshino, and Jung Hyun Han
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0209 industrial biotechnology ,Vegetation succession ,business.industry ,4. Education ,05 social sciences ,Environmental resource management ,ComputingMilieux_PERSONALCOMPUTING ,02 engineering and technology ,Game play ,vegetation succession ,020901 industrial engineering & automation ,Geography ,medicine ,[INFO.INFO-DL]Computer Science [cs]/Digital Libraries [cs.DL] ,0501 psychology and cognitive sciences ,Game based ,medicine.symptom ,Vegetation (pathology) ,business ,Digital interaction game ,050107 human factors ,Simulation - Abstract
International audience; In this study, we redesign and develop a new digital sugoroku game based on the phenomenon of vegetation succession. A practical evaluation in an elementary school that consisted of game play and fieldwork activity was conducted. The results of the evaluation showed that the game was effective in stimulating the interest of the students who participated in the game, and was able to support their learning in a joyful way.
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- 2010
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24. Construction of a medium-density horse gene map
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Teri L. Lear, P. de Jong, Sead Chadi, Bhanu P. Chowdhary, Leopoldo Iannuzzi, V. Boutreux, Telhisa Hasegawa, Xavier Mata, Gaetan Guérin, Terje Raudsepp, M. Perrocheau, Baoli Zhu, Domenico Incarnato, Kei-ichi Hirota, Edmond-Paul Cribiu, Pauline Decaunes, Keith Durkin, Génétique Animale et Biologie Intégrative (GABI), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Molecular Cytogenetics Laboratory, Texas A&M University [College Station], Laboratory of Animal Cytogenetics and Gene Mapping, National Research Council [Italy] (CNR), Gluck Equine Research Center, University of Kentucky, Laboratory of Racing Chemistry, Utsunomiya, Laboratory of Molecular and Cellular Biology, BACPAC Resources, Children's Hospital Oakland Research Institute, AgroParisTech-Institut National de la Recherche Agronomique (INRA), and Utsunomiya University [Utsunomiya]
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Genetic Markers ,Chromosomes, Artificial, Bacterial ,MESH: Chromosomes, Artificial, Bacterial ,Biology ,MESH: Genetic Markers ,Chromosomes ,law.invention ,Evolution, Molecular ,03 medical and health sciences ,Gene mapping ,law ,[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,Genetics ,Animals ,Humans ,MESH: Animals ,Horses ,MESH: In Situ Hybridization, Fluorescence ,MESH: Horses ,Gene ,In Situ Hybridization, Fluorescence ,Polymerase chain reaction ,MESH: Evolution, Molecular ,MESH: Genome, Human ,030304 developmental biology ,0303 health sciences ,MESH: Humans ,Gene map ,Genome, Human ,030305 genetics & heredity ,Chromosome Mapping ,Chromosome ,General Medicine ,Horse genome ,Animal Science and Zoology ,Human genome ,MESH: Chromosomes ,Primer (molecular biology) ,MESH: Chromosome Mapping - Abstract
International audience; A medium-density map of the horse genome (Equus caballus) was constructed using genes evenly distributed over the human genome. Three hundred and twenty-three exonic primer pairs were used to screen the INRA and the CHORI-241 equine BAC libraries by polymerase chain reaction and by filter hybridization respectively. Two hundred and thirty-seven BACs containing equine gene orthologues, confirmed by sequencing, were isolated. The BACs were localized to horse chromosomes by fluorescent in situ hybridization (FISH). Overall, 165 genes were assigned to the equine genomic map by radiation hybrid (RH) (using an equine RH(5000) panel) and/or by FISH mapping. A comparison of localizations of 713 genes mapped on the horse genome and on the human genome revealed 59 homologous segments and 131 conserved segments. Two of these homologies (ECA27/HSA8 and ECA12p/HSA11p) had not been previously identified. An enhanced resolution of conserved and rearranged chromosomal segments presented in this study provides clarification of chromosome evolution history.
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- 2006
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25. Self-asembly and crystallization behavior of mesoporous, crystalline HfO2 thin films : a model system for the generation of mesostructured transition-metal oxides
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Clément Sanchez, Heinz Amenitsch, David Grosso, Cédric Boissière, Markus Antonietti, Bernd M. Smarsly, Torsten Brezesinski, Ken-ichi Iimura, Max Planck Institute of Colloids and Interfaces, Max-Planck-Gesellschaft, Utsunomiya University, Dpt. of Applied Chemistry, Faculty of Engineering, Utsunomiya University [Utsunomiya], Laboratoire de Chimie de la Matière Condensée de Paris (site Paris VI) (LCMCP (site Paris VI)), Université Pierre et Marie Curie - Paris 6 (UPMC)-Collège de France (CdF (institution))-Ecole Nationale Supérieure de Chimie de Paris - Chimie ParisTech-PSL (ENSCP), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Institute of Biophysics and X-ray structure research Austrian Academy of Sciences, and Institute of Biophysics and X-ray structure research
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Materials science ,Nitrogen ,Polymers ,Metal Nanoparticles ,02 engineering and technology ,010402 general chemistry ,Crystallography, X-Ray ,Microscopy, Atomic Force ,01 natural sciences ,law.invention ,Biomaterials ,Transition metal ,Microscopy, Electron, Transmission ,law ,Materials Testing ,Nanotechnology ,Scattering, Radiation ,General Materials Science ,Crystallization ,Thin film ,chemistry.chemical_classification ,Fourier Analysis ,Scattering ,Temperature ,Oxides ,General Chemistry ,Polymer ,[CHIM.MATE]Chemical Sciences/Material chemistry ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Amorphous solid ,Crystallography ,Chemical engineering ,chemistry ,Models, Chemical ,Self-assembly ,0210 nano-technology ,Mesoporous material ,Hafnium ,Biotechnology - Abstract
Mesoporous thin films of crystalline hafnium oxide were fabricated by evaporation-induced self-assembly in combination with sol-gel processing, followed by a suitable post heat-treatment procedure to initiate the crystallization. A novel type of block-copolymer template was used as structure-directing agent, which generated a distorted cubic arrangement of spherical mesopores, the size of which could be quantified by suitable techniques, such as ellipsometry-porosimetry, small-angle X-ray scattering, and atomic force microscopy. Detailed insights into the nature of the crystallization process of mesostructured hafnium oxide were obtained by temperature-dependent, in situ X-ray scattering experiments. These investigations revealed that crystallization takes place, within the confinement of the mesostructure, as a solid-solid transition from a dehydrated, amorphous form of hafnium oxide. The study suggests that one main benefit of the novel template results from the ability of the polymer to stabilize the mesostructure of amorphous hafnium oxide up to 400-450 degrees C.
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- 2005
26. Kinetic effects in strong Langmuir turbulence
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Akimoto, Kazuhiro, Hojo, Hitoshi, Saitou, Yoshifumi, School of Science and Engineering, Teikyo University, Plasma Research Center, Université de Tsukuba = University of Tsukuba, School of Engineering, and Utsunomiya University [Utsunomiya]
- Subjects
Plasma Physics (physics.plasm-ph) ,strong Langmuir turbulence ,transit-time acceleration ,[PHYS.PHYS.PHYS-PLASM-PH]Physics [physics]/Physics [physics]/Plasma Physics [physics.plasm-ph] ,Physics::Plasma Physics ,FOS: Physical sciences ,nonlinear Landau damping ,PACS: 52.35.Ra ,Physics - Plasma Physics ,Langmuir soliton - Abstract
Kinetic effects with regard to a one dimensional Langmuir soliton-like pulse are investigated. Though thus far mainly transit-time accelerations have been investigated regarding strong Langmuir turbulence, it is found that ponderomotive reflections (generalized nonlinear Landau damping) may play important roles also. The former may diffuse fast electrons up to relativistic energies, while the latter reflects slow electrons as well as ions that have speeds comparable with the group velocity of the pulse, and tend to form flat-top electron distributions at and around the quasi-soliton., Comment: 12th International Congress on Plasma Physics, 25-29 October 2004, Nice (France)
- Published
- 2004
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27. Quantification of gas concentrations in mixtures of known gases using an array of different tin-oxide sensors
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Dominique Martinez, B.W. Jervis, J. Jimenez, J. Desfieux, School of Engineering, Utsunomiya University [Utsunomiya], Neuromimetic intelligence (CORTEX), INRIA Lorraine, Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire Lorrain de Recherche en Informatique et ses Applications (LORIA), Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique de Lorraine (INPL)-Université Nancy 2-Université Henri Poincaré - Nancy 1 (UHP)-Institut National de Recherche en Informatique et en Automatique (Inria)-Centre National de la Recherche Scientifique (CNRS)-Institut National Polytechnique de Lorraine (INPL)-Université Nancy 2-Université Henri Poincaré - Nancy 1 (UHP), and Institut National de Recherche en Informatique et en Automatique (Inria)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS)-Université Henri Poincaré - Nancy 1 (UHP)-Université Nancy 2-Institut National Polytechnique de Lorraine (INPL)-Centre National de la Recherche Scientifique (CNRS)
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Computer Science::Neural and Evolutionary Computation ,[INFO.INFO-OH]Computer Science [cs]/Other [cs.OH] ,apprentissage bayesien ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Error bar ,capteurs de gaz ,Electrical and Electronic Engineering ,Mathematics ,Training set ,Artificial neural network ,business.industry ,réseaux de neurones ,Electrical engineering ,021001 nanoscience & nanotechnology ,Tin oxide ,neural networks ,Backpropagation ,0104 chemical sciences ,gas sensors ,multilayer perceptrons ,0210 nano-technology ,business ,Algorithm ,bayesian training ,perceptrons multicouches - Abstract
Article dans revue scientifique avec comité de lecture. internationale.; International audience; Two multilayer-perceptron (MLP) artificial-neural-network (ANN) committee methods and a mathematical-macromodelling method for determining the concentrations of gases in a known gas mixture from the outputs of an array of tin-oxide gas sensors placed in the mixtures are described. The committee approach is also used to determine the associated error bars. A large set of artificial training data generated from the small set of experimental data was used to train the MLPs. For the Bayesian-trained committee methods average predicted concentration errors of 1.66 to 9.49% were obtained. The macromodelling method resulted in errors of 19.7 to 33%, but was much easier to implement and faster. Training by back propagation gave much worse accuracy. The average calculated error bars were in good agreement with the actual errors in prediction. The concentration errors were comparable to those yielded by other methods and were at least partly determined by the original errors in the concentration measurements.
- Published
- 2003
28. Multiple fault diagnosis in analogue circuits using time domain response features and multilayer perceptrons
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S. Lesage, S. Ogg, B.W. Jervis, Y. Maidon, T. Zimmer, Neurologie et thérapeutique expérimentale, Institut National de la Santé et de la Recherche Médicale (INSERM)-IFR70-Université Pierre et Marie Curie - Paris 6 (UPMC), School of Engineering, Utsunomiya University [Utsunomiya], Laboratoire de l'intégration, du matériau au système (IMS), Université Sciences et Technologies - Bordeaux 1-Institut Polytechnique de Bordeaux-Centre National de la Recherche Scientifique (CNRS), Université Pierre et Marie Curie - Paris 6 (UPMC)-IFR70-Institut National de la Santé et de la Recherche Médicale (INSERM), and Université Sciences et Technologies - Bordeaux 1 (UB)-Institut Polytechnique de Bordeaux-Centre National de la Recherche Scientifique (CNRS)
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0209 industrial biotechnology ,Analogue circuits ,Artificial neural network ,Computer science ,Computer Science::Neural and Evolutionary Computation ,020208 electrical & electronic engineering ,02 engineering and technology ,Integrated circuit ,Impulse (physics) ,Perceptron ,law.invention ,Computer Science::Hardware Architecture ,020901 industrial engineering & automation ,law ,Multilayer perceptron ,Hardware_INTEGRATEDCIRCUITS ,0202 electrical engineering, electronic engineering, information engineering ,Electronic engineering ,Time domain ,[SPI.NANO]Engineering Sciences [physics]/Micro and nanotechnologies/Microelectronics ,Electrical and Electronic Engineering ,Algorithm ,ComputingMilieux_MISCELLANEOUS ,Impulse response - Abstract
A technique is described for diagnosing multiple faults in analogue circuits from their impulse response function using multilayer perceptrons, in terms of a specific example. A Dirac impulse input to the circuit was simulated, and time domain features of the output response were classified by a system of two multilayer perceptrons to produce accurate numerical fault values.
- Published
- 1998
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29. Molecular and cellular regulators of embryo implantation and their application in improving the implantation potential of IVF-derived blastocysts.
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Liu C, Fukui E, and Matsumoto H
- Abstract
Background: In vitro fertilization (IVF) and embryo transfer (ET) are widely used in reproductive biology. Despite the transfer of high-quality blastocysts, the implantation rate of IVF-derived blastocysts remains low after ET., Methods: This article provides a comprehensive review of current research on embryo implantation regulators and their application to improve the implantation potential of IVF-derived blastocysts., Main Findings: The in vivo mouse model revealed selective proteolysis immediately after expression in activated blastocysts, that is, degradation of ERα expression in activated blastocysts regulated by the ubiquitin-proteasome pathway, followed by completion of blastocyst implantation. Treatment of blastocysts to induce appropriate protein expression during in vitro culture prior to ET is a useful approach for improving implantation rates. This approach showed that combined treatment with PRL, EGF, and 4-OH-E
2 (PEC) improved the blastocyst implantation rates. Furthermore, arginine and leucine drive reactive oxygen species (ROS)-mediated integrin α5β1 expression and promote blastocyst implantation., Conclusion: Findings based on analysis of molecular and cellular regulators are useful for improving the implantation potential of IVF-derived blastocysts. These approaches may help to elucidate the mechanisms underlying the completion of the blastocyst implantation, although further investigation is required to improve the success of implantation and pregnancy., Competing Interests: Author H.M. was supported by JSPS KAKENHI (Grant Nussmbers 25 450 390, 18K05936, 21K05903, and 24K09098), and author H.M. has a patent for quality of embryos., (© 2025 The Author(s). Reproductive Medicine and Biology published by John Wiley & Sons Australia, Ltd on behalf of Japan Society for Reproductive Medicine.)- Published
- 2025
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30. Single-cell transcriptome analysis of medaka lymphocytes reveals absence of fully mature T cells in the thymus and the T-lineage commitment in the kidney.
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Sakaguchi H, Matsuda M, and Iwanami N
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- Animals, Gene Expression Profiling, Transcriptome, T-Lymphocytes immunology, T-Lymphocytes metabolism, Homeodomain Proteins genetics, Fish Proteins genetics, Fish Proteins immunology, Fish Proteins metabolism, Single-Cell Gene Expression Analysis, Oryzias genetics, Oryzias immunology, Thymus Gland immunology, Thymus Gland cytology, Thymus Gland metabolism, Single-Cell Analysis, Kidney cytology, Kidney immunology, Kidney metabolism, Cell Lineage genetics
- Abstract
The cellular and molecular mechanisms underlying lymphocyte development are diverse among teleost species. Although recent scRNA-seq analyses of zebrafish hematopoietic cells have advanced our understanding of teleost hematopoiesis, comparative studies using another genetic model, medaka, which is evolutionarily distant among teleosts, is useful for understanding commonality and species-specificity in teleosts. In order to gain insight into how different molecular and cellular mechanisms of lymphocyte development in medaka and zebrafish, we established a recombination activating gene 1 ( rag1 ) mutant medaka, which exhibited defects in V(D)J rearrangement of lymphocyte antigen receptor genes, accordingly lacking mature B and T cells. scRNA-seq analysis of wild type and rag1 mutant lymphocytes in the thymus and kidney characterized the developing stages of T and B cells, and found that most developed cd4
+ cd8- and cd4- cd8+ single-positive (SP) T-cell populations are absent in the thymus, and identified lymphoid progenitor cells already committed to the T lineage in kidney, implying unique features of medaka lymphocyte development., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2025 Sakaguchi, Matsuda and Iwanami.)- Published
- 2025
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31. Effects of maternal liver abnormality on in vitro maturation of bovine oocytes.
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Ashibe S, Kobayashi Y, Toishikawa S, and Nagao Y
- Abstract
In cattle, maternal metabolic health has been suggested to influence oocyte and embryo quality. Here, we examined whether maternal liver abnormalities affected in vitro oocyte maturation by screening meiotic maturation, spindle morphology, actin filaments, and lysosomes. In oocytes from the abnormal liver group, the maturation rate (80.2%) was significantly lower compared to a control group with healthy livers (90.8%; P < 0.05). Mean spindle area in oocytes of the abnormal group (50.4 ± 3.4 μm
2 ) was significantly larger than in the control (40.8 ± 1.6 μm2 ; P < 0.05). Likewise, mean spindle width in the abnormal group (8.8 ± 0.3 μm) was significantly larger than in the control group (7.8 ± 0.2 μm; P < 0.05). The proportion of cells with correctly aligned chromosomes in the abnormal group (48.0%) was significantly lower than in the control (78.3%; P < 0.05). The number of cortical actin filaments in mature oocytes of the abnormal group (299.3 ± 3.7) was significantly lower than in the control (314.7 ± 3.2; P < 0.05). The number of lysosomes in mature oocytes of the abnormal group (1363.6 ± 39.0) was significantly higher than in the control (1123.4 ± 26.3; P < 0.05). In conclusion, our findings indicate that the quality of in vitro matured oocytes is lower in cattle with liver abnormalities than in healthy cattle.- Published
- 2025
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32. Total RNA Extraction from Rice Vegetative Tissues Using Magnetic Beads.
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Yoshino K and Kawakatsu T
- Subjects
- Thiocyanates chemistry, 2-Propanol chemistry, Oryza genetics, Oryza chemistry, RNA, Plant isolation & purification, RNA, Plant genetics, Guanidines chemistry
- Abstract
Ribonucleic acid (RNA) extraction is the first critical step in gene expression analysis. In this chapter, we describe a high-throughput RNA extraction method using guanidine thiocyanate and isopropyl alcohol (HighGI). The use of carboxyl-coated paramagnetic beads, instead of silica membrane columns, enables semi-automation using a liquid handling system and high-throughput RNA extraction for large-scale transcriptome studies. Homemade mixes of paramagnetic beads and buffers make HighGI inexpensive. In addition, HighGI-extracted RNA retains low molecular weight RNA molecules less than 200 bp, which is typically lost in commercial column-based kits., (© 2025. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.)
- Published
- 2025
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33. The interleukin-1α stimulated expression of the wrinkle-inducing elastase neprilysin in adult human dermal fibroblasts is mediated via the intracellular signaling axis of ERK/JNK/c-Jun/c-Fos/AP-1.
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Takada M, Pinnawala UC, Hirano S, and Imokawa G
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- Humans, Cells, Cultured, Signal Transduction drug effects, MAP Kinase Signaling System drug effects, Adult, Proto-Oncogene Proteins c-jun metabolism, Fibroblasts metabolism, Interleukin-1alpha metabolism, Transcription Factor AP-1 metabolism, Neprilysin metabolism, Neprilysin genetics, Proto-Oncogene Proteins c-fos metabolism, Skin Aging
- Abstract
Neprilysin is a skin wrinkle-inducing membrane bound elastase that is expressed abundantly in UV-exposed and in aged dermal fibroblasts. The overexpression of neprilysin is closely associated with enhanced epithelial-mesenchymal cytokine interactions mainly via interleukin (IL)-1α, which has the distinct potential to stimulate the expression of neprilysin by human dermal fibroblasts (HDFs). The over-expression of neprilysin also accelerates the formation of wrinkles, accompanied by disruptions of the three-dimensional architecture of dermal elastic fibers that are responsible for the loss of skin elasticity. Because the signaling pathway(s) that lead to the IL-1α-stimulated expression of neprilysin in HDFs remain unclear, we characterized the signaling pathway involved, including their related transcription factors, in IL-1α-treated HDFs. Since qRT-PCR analysis revealed that the mRNA expression level of neprilysin is stimulated to a stronger extent in adult HDFs (aHDFs) by IL-1α than in neonatal HDFs, we used aHDFs for the signaling analysis. Western blotting analysis of the phosphorylation of signaling factors revealed that IL-1α significantly stimulated the phosphorylation of ERK1/2, RSK, JNK, p38, MSK1, NFkB, c-Jun, ATF-2, CREB, and STAT3. Analysis using various signaling inhibitors demonstrated that inhibiting ERK and JNK but not p38, MSK1, NFkB, or STAT3 significantly abrogated the IL-1α stimulated expression of neprilysin at the mRNA, protein, and enzyme activity levels. Furthermore, silencing c-Fos significantly down-regulated the IL-1α-increased expression of neprilysin at the protein and enzyme activity levels. These findings strongly suggest that the IL-1α-stimulated expression of neprilysin in aHDFs is mediated via the intracellular signaling axis of ERK/JNK/c-Jun/c-Fos/AP-1., (© 2024 The Author(s). The Journal of Dermatology published by John Wiley & Sons Australia, Ltd on behalf of Japanese Dermatological Association.)
- Published
- 2025
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34. Physcomitrium LATERAL SUPPRESSOR genes promote formative cell divisions to produce germ cell lineages in both male and female gametangia.
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Horiuchi Y, Umakawa N, Otani R, Tamada Y, Kosetsu K, Hiwatashi Y, Wakisaka R, Yoshida S, Murata T, Hasebe M, Ishikawa M, and Kofuji R
- Abstract
The evolution of green plants from aquatic to terrestrial environments is thought to have been facilitated by the acquisition of gametangia, specialized multicellular organs housing gametes. Antheridia and archegonia, responsible for producing and protecting sperm and egg cells, undergo formative cell divisions to produce a cell to differentiate into germ cell lineages and the other cell to give rise to surrounding structures. However, the genes governing this process remain unidentified. We isolated genes expressed during gametangia development from previously established gene-trap lines of Physcomitrium patens and characterized their function during gametangia formation. We identified P. patens LATERAL SUPPRESSOR 1 (PpLAS1) from the gene-trap library, encoding a GRAS transcription factor. The double-deletion mutant with its paralog PpLAS2 failed to form inner cells in both gametangia. PpLASs are expressed in cells undergoing formative cell division, and introducing PpLAS1 into the double-deletion mutant successfully rescued the phenotype. These findings underscore the pivotal role of PpLASs in regulating formative cell divisions, ensuring the separation of reproductive cell lineages from surrounding cells in antheridia and archegonia. Furthermore, they suggest a link between PpLASs and the evolutionary origin of male and female gametangia in the common ancestor of land plants., (© 2024 The Author(s). New Phytologist © 2024 New Phytologist Foundation.)
- Published
- 2024
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35. Author Correction: Infrared laser-induced gene expression in single cells characterized by quantitative imaging in Physcomitrium patens.
- Author
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Tomoi T, Yoshida Y, Ohe S, Kabeya Y, Hasebe M, Morohoshi T, Murata T, Sakamoto J, Tamada Y, and Kamei Y
- Published
- 2024
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36. Curcumin-Derived Turn-Off Fluorescent Probe for Copper (II) Ion Detection and Live Cell Imaging Applications.
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Rajam P, Jeevika A, and Mahalakshmy R
- Subjects
- Humans, Optical Imaging, Spectrometry, Fluorescence, Molecular Structure, Density Functional Theory, HeLa Cells, Cell Survival, Ions analysis, Ions chemistry, Copper chemistry, Copper analysis, Fluorescent Dyes chemistry, Fluorescent Dyes chemical synthesis, Curcumin chemistry
- Abstract
A curcumin-derived chemosensor 4,4'-((1E,3Z,5Z,6E)-3,5-bis((2hydroxyphenyl)imino) hepta-1,6-diene-1,7-diyl)bis(2-methoxyphenol) (HIBMP) was developed from curcumin and o-aminophenol using Schiff base condensation method. HIBMP selectively recognizes Cu (II) ion (Cu (II)) relative to other tested metal ions. Selective binding of Cu (II) ion turns off the fluorescent property of HIBMP and shows no interference with other metal ions. Moreover, the favourable binding of Cu (II) with HIBMP was noticed by a good linearity between the fluorescence intensity and concentration of Cu (II) with a range of 0-15.6 × 10
-7 M, and the limit of detection was determined to be as low as 30.1 nM. Furthermore a 1:1 stoichiometry was identified from the results of Job's plot and HR-MS. Density functional theory (DFT) calculation results expressed that the intramolecular charge transfer (ICT) during chelation is responsible for quenching of fluorescence. Besides, the fluorescence life time measurement and ethylenediaminetetraacetic acid (EDTA) titration method revealed the stability and reversibility of the sensor. Practical use of the sensor was achieved through the quantitative analysis of spiked Cu (II) ion in real water samples with good recoveries, and biological experiments exposed that the sensor was less toxic and could be applied in fluorescence imaging of Cu (II) in living cells., (© 2024 John Wiley & Sons Ltd.)- Published
- 2024
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37. Infrared laser-induced gene expression in single cells characterized by quantitative imaging in Physcomitrium patens.
- Author
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Tomoi T, Yoshida Y, Ohe S, Kabeya Y, Hasebe M, Morohoshi T, Murata T, Sakamoto J, Tamada Y, and Kamei Y
- Subjects
- Single-Cell Analysis methods, Bryopsida genetics, Bryopsida radiation effects, Bryopsida metabolism, Infrared Rays, Lasers, Gene Expression Regulation, Plant radiation effects, Heat-Shock Response genetics
- Abstract
A spatiotemporal understanding of gene function requires the precise control of gene expression in each cell. Here, we use an infrared laser-evoked gene operator (IR-LEGO) system to induce gene expression at the single-cell level in the moss Physcomitrium patens by heating a living cell with an IR laser and thereby activating the heat shock response. We identify the laser irradiation conditions that provide higher inducibility with lower invasiveness by changing the laser power and irradiation duration. Furthermore, we quantitatively characterize the induction profile of the heat shock response using a heat-induced fluorescence reporter system after the IR laser irradiation of single cells under different conditions. Our data indicate that IR laser irradiation with long duration leads to higher inducibility according to increase in the laser power but not vice versa, and that the higher laser power even without conferring apparent damage to the cells decelerates and/or delayed gene induction. We define the temporal shift in expression as a function of onset and duration according to laser power and irradiation duration. This study contributes to the versatile application of IR-LEGO in plants and improves our understanding of heat shock-induced gene expression., (© 2024. The Author(s).)
- Published
- 2024
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38. Light promotes asexual reproduction and mediates transcriptomic changes in Pediastrum duplex.
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Masaki A, Miyamoto N, Harshavardhini S, Nagata N, Tsuchikane Y, Sekimoto H, Kodama Y, Suzuki T, and Shinomura T
- Subjects
- Gene Expression Profiling, Photosynthesis, Chlorophyceae genetics, Chlorophyceae physiology, Chlorophyta genetics, Chlorophyta physiology, Chlorophyta radiation effects, Gene Expression Regulation, Plant, Reproduction, Asexual, Transcriptome, Light
- Abstract
The green alga Pediastrum duplex forms colonies through asexual reproduction and has a unique life cycle. To elucidate the mechanisms that regulate the asexual reproductive cycle in P. duplex, we analyzed the effects of light on the processes and gene expression involved in each step of the asexual reproductive cycle, revealing light irradiation to be essential for increasing the number of colonies. Among the processes in the asexual reproductive cycle, the transition from cell hypertrophy to zoospore formation could proceed even in the dark if glucose was added to the medium. Transcriptome analysis revealed that the expression of different groups of genes was significantly promoted or suppressed before and after the number of colonies increased. Our findings indicate that the asexual reproductive cycle of P. duplex includes a process promoted by photosynthesis. This study enhances our understanding of the growth characteristics of P. duplex and other microalgae., (© 2024. The Author(s) under exclusive licence to The Botanical Society of Japan.)
- Published
- 2024
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39. Scoliidines: Neuroprotective Peptides in Solitary Scoliid Wasp Venoms.
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Alberto-Silva C, Vieira Portaro FC, Kodama RT, Gomes L, da Silva BR, da Cunha E Silva FA, Nihei KI, and Konno K
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- Animals, PC12 Cells, Rats, Mitochondria drug effects, Peptides pharmacology, Peptides chemistry, Oxidative Stress drug effects, Amino Acid Sequence, Wasp Venoms chemistry, Wasp Venoms pharmacology, Neuroprotective Agents pharmacology, Neuroprotective Agents chemistry, Wasps
- Abstract
A comprehensive LC-MS study examined the venom components of the solitary scoliid wasp Scolia oculata . Online mass fingerprinting showed that crude venom contains 25 small molecules (amino acids, biogenic amines, and nucleosides/nucleotides) and 45 peptides with MW 400-2700. The small molecules were identified by elemental composition analysis, and peptide sequences were determined by ESI-MS/MS and MALDI-TOF/TOF MS analyses. As major peptide components, a known peptide, β-scoliidine (DYVTVKGFSPLRKA), and three new peptides, γ-scoliidine (YVTVKGFSPLR), δ-scoliidine (YVTVKGFSPLREP) and ε-scoliidine (DYVTVKGFSPLREP) were identified, all of which are closely homologous to each other. Once the neuroprotective effects of β-scoliidine have already been described, the other three new scoliidine peptides were analyzed against oxidative stress-induced toxicity in PC12 neuronal cells by mitochondrial metabolism assay, and the structure-activity relationship was evaluated. Interestingly, pre-treatment with ε-scoliidine increased the mitochondrial metabolism of PC12 cells (106 ± 3.6%; p = 0.007) exposed to H
2 O2 -induced oxidative stress in contrast to γ- and δ-scoliidines (77.6 ± 4.8 and 68.5 ± 4.1%, respectively) in compared to cells treated only H2 O2 (75.8 ± 2.4%). These new peptides were also analyzed for enzyme inhibitor/substrate assays with angiotensin-converting enzyme (ACE), neprilysin (NEP), and acetylcholinesterase (AChE). In these assays, only δ- and ε-scoliidines increased the AChE activity (128.7 ± 3.8%; p = 0.01; and 116.8 ± 3.8% p = 0.03; respectively) in relation to basal activity (100.1 ± 1.6%). In addition, the four peptides were analyzed through in silico analysis, and none of them demonstrated possible hemolytic and toxic activities. In our study, the comprehensive LC-MS and MS/MS analyses of Scolia oculate venom identified four major peptide components of the venom β-, γ-, δ- and ε-scoliidines, and small differences in their primary structures are important to their neuroprotective properties.- Published
- 2024
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40. Propagation path of a flowering cherry (Cerasus × yedoensis) cultivar 'Somei-Yoshino' traced by somatic mutations.
- Author
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Shirasawa K, Esumi T, Itai A, Hatakeyama K, Takashina T, Yakuwa T, Sumitomo K, Kurokura T, Fukai E, Sato K, Shimada T, Shiratake K, Hosokawa M, Monden Y, Kusaba M, Ikegami H, and Isobe S
- Subjects
- Genome, Plant, Japan, Prunus genetics, Flowers genetics, Phylogeny, Mutation
- Abstract
In the long history of human relations with flowering cherry trees in Japan, 'Somei-Yoshino' occupies an exceptional position among a variety of flowering trees: it is a self-incompatible interspecific hybrid but has been enthusiastically planted by grafting throughout Japan, due most likely to its flamboyant appearance upon full bloom. Thus, 'Somei-Yoshino' gives us a rare opportunity to trace and investigate the occurrence and distribution of somatic mutations within a single plant species through analysis of the genomes of the clonally propagated trees grown under a variety of geographical and artificial environments. In the studies presented here, a total of 46 samples of 'Somei-Yoshino' trees were collected and their genomes were analysed. We identified 684 single nucleotide mutations, of which 71 were present in more than two samples. Clustering analysis of the mutations indicated that the 46 samples were classified into eight groups, four of which included 36 of the 46 samples analysed. Interestingly, all the four tree samples collected in Ueno Park of Tokyo were members of the four groups mentioned above. Based on comparative analysis of their mutations, one of the four trees growing in Ueno Park was concluded to be the closest to the original ancestor. We propose that somatic mutations may be used as tracers to establish the ancestral relationship amongst clonally propagated individuals., (© The Author(s) 2024. Published by Oxford University Press on behalf of Kazusa DNA Research Institute.)
- Published
- 2024
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41. Antistress Effects of Terpinen-4-ol and Compounds of Mimicked Yuzu Synthetic Fragrance in Humans and Mice.
- Author
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Kitamoto T, Mizushige T, Xie X, Uematsu T, Ogura R, Sato K, Yamazaki Y, Matsushita T, and Hasegawa H
- Abstract
This study investigated the antistress effects of yuzu synthetic fragrances by employing three experiments on humans and mice using two yuzu synthetic fragrances and five single compounds. We prepared two synthetic fragrances based on the component analysis of two natural yuzu essential oils extracted by cold-pressed and steam-distilled extraction methods. Chromogranin A (CgA) and heart rate (HR) were used as stress indices in human experiments. Immobility time during the forced swim test was used as a stress index in mice experiments. We analyzed brain mechanisms by measuring the expression of neurotrophic factors, brain-derived neurotrophic factor (BDNF), nerve growth factor (NGF), and neurotrophin-3 (NT-3) in the mice experiments. Synthetic yuzu fragrance mimicked steam-distilled oil (SD) significantly reduced participants' heart rate in experiment 1. In the forced swim test conducted in experiment 2, SD significantly reduced immobility time, and increased the expression of neurotrophic factors BDNF, NGF, and NT-3 in the hippocampus of mice. In experiment 3, focusing on single compounds, terpinen-4-ol significantly reduced immobility time in the forced swim test. These findings indicate that inhalation of SD and terpinen-4-ol has antistress effects. Terpinen-4-ol is a strong candidate for further investigation as a potential stress-reducing agent.
- Published
- 2024
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42. Identification of two missing genome segments of tulip streak virus.
- Author
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Neriya Y and Nishigawa H
- Abstract
Complete sequences of RNA1 and RNA2 of tulip streak virus (TuSV) were already reported, but other segments were not yet. In this study, we reported RNA3 and RNA4 of TuSV, which shared around 69% nucleotide identity with those of closely related virus, suggesting that these are additional RNA segments., Competing Interests: The authors declare no conflict of interest.
- Published
- 2024
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43. Integrated approach for seismic wave prediction and structural evaluation of Oya tuff quarry underground spaces: Field observations and numerical modeling.
- Author
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Cheng C, Shizuo N, Dintwe TKM, Seiki T, and Iwanami M
- Abstract
This study evaluates the structural stability of large underground spaces in seismic conditions, represented by the Oya underground stone mining plant. By directly monitoring the seismic response of the underground mining site, significant earthquake activities at the plate boundaries of the Tokyo region and Ibaraki Prefecture offshore area were observed. Additionally, through an in-depth analysis of seismic records from different locations within the underground structure, the dynamic characteristics and motion patterns of the Oya underground stone mining plant were revealed, revealing its movement trajectory during earthquakes. Additionally, this study innovatively applied seismic waves measured at the original site as input parameters and artificially generated seismic waves based on their response spectra. A numerical analysis was performed after ensuring the model's high correlation with the original site was met. The findings demonstrate that the results of both parameter input methods are confirmable and valuable. Under severe seismic conditions, instability was observed in some regions of the underground mining site. The study also discusses the location and damage mechanisms of the mining site's structure under seismic effects, providing valuable insights for the safety assessment of similar large underground spaces and proposing new approaches for selecting input parameters in seismic analysis., Competing Interests: The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: CHENG CHUANTAO reports financial support was provided by 10.13039/501100002241Japan Science and Technology Agency. Takafumi SEIKI reports financial support was provided by Chuden Engineering Consultants Co. Ltd, Japan. Takafumi SEIKI reports financial support was provided by Utsunomiya City Hall for Oya area development. If there are other authors, they declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors.)
- Published
- 2024
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44. Insect cuticular protein; gene expression, genomic structure, transcriptional regulation, speculated cuticular structure, clarified through the genomic analysis of Bombyx mori.
- Author
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Kawasaki H
- Subjects
- Animals, Genome, Insect, Ecdysone metabolism, Gene Expression Regulation, Developmental, Transcription Factors genetics, Transcription Factors metabolism, Transcription Factors chemistry, Larva genetics, Larva metabolism, Larva growth & development, Wings, Animal metabolism, Wings, Animal growth & development, Gene Expression Regulation, Metamorphosis, Biological genetics, Bombyx genetics, Bombyx metabolism, Bombyx growth & development, Insect Proteins genetics, Insect Proteins metabolism, Insect Proteins chemistry
- Abstract
JH and ecdysone signaling regulate insect metamorphosis through the master transcription factors, Krüppel homolog 1 (kr-h1), Broad-Complex (BR-C), and E93. Ecdysone signaling activates successively expressed ecdysone responsive transcription factors (ERTFs), and the interaction between ERTFs determines the expression profiles of ERTFs themselves. Through the construction of expressed sequence tag (EST) database of Bombyx mori from many tissues, the existence of a large number of cuticular protein (CP) genes was identified in wing disc cDNA library of the 3 days after the start of wandering (W3). From the genomic analysis, 12 types of CP clusters of CP genes were identified. DNA sequences of CP genes revealed the duplication of CP genes, which suggests to reflect the insect evolution. These CP genes responded to ecdysone and ecdysone pulse; therefore, CP genes were applied for the analysis of transcriptional regulation by ERTF. The binding sites of ERTF have been reported to exist upstream of CP genes in several insects, and the activation of CP genes occurred by the binding of ERTFs. Through the analysis, the following were speculated; the successive appearance of ERTFs and the activation of target genes resulted in the successively produced CPs and cuticular layer. The sequence of the ERTF and CP gene expression was the same at larval to pupal and pupal to adult transformation. The involvement of several ERTFs in one CP gene expression was also clarified; BmorCPG12 belongs to group showing expression peak at W3 and was regulated by two ERTFs; BHR3 and ßFTZ-F1, BmorCPH2 belongs to group showing expression peak at P0 and was regulated by two ERTFs; ßFTZ-F1 and E74A. The involvement of BHR39 as a negative regulator of CP gene expression was found. Larval, pupal, and adult cuticular layers were supposed to be constructed by the combination of different and similar types of CPs, through the expressed timing of CP genes., (© 2024 Wiley Periodicals LLC.)
- Published
- 2024
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- View/download PDF
45. Metabolic profiles in drought-tolerant wheat with enhanced abscisic acid sensitivity.
- Author
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Weng Y, Mega R, Abe F, Tsujimoto H, and Okamoto M
- Subjects
- Stress, Physiological, Metabolome drug effects, Plants, Genetically Modified, Gene Expression Regulation, Plant, Triticum metabolism, Triticum genetics, Triticum drug effects, Abscisic Acid metabolism, Droughts
- Abstract
Global warming has led to the expansion of arid lands and more frequent droughts, which are the largest cause of global food production losses. In our previous study, we developed TaPYLox wheat overexpressing the plant hormone abscisic acid (ABA) receptor, which is important for the drought stress response in plants. TaPYLox showed resistance to drought stress and acquired water-saving traits that enable efficient grain production with less water use. In this study, we used TaPYLox to identify ABA-dependent and -independent metabolites in response to drought stress. We compared the variation of metabolites in wheat under well-watered, ABA treatment, and drought stress conditions using the ABA-sensitive TaPYLox line and control lines. The results showed that tagatose and L-serine were ABA-dependently regulated metabolites, because their stress-induced accumulation was increased by ABA treatment in TaPYLox. In contrast, L-valine, L-leucine, and DL-isoleucine, which are classified as branched chain amino acids, were not increased by ABA treatment in TaPYLox, suggesting that they are metabolites regulated in an ABA-independent manner. Interestingly, the accumulation of L-valine, L-leucine, and DL-isoleucine was suppressed in drought-tolerant TaPYLox under drought stress, suggesting that drought-tolerant wheat might be low in these amino acids. 3-dehydroshikimic acid and α-ketoglutaric acid were decreased by drought stress in an ABA-independent manner. In this study, we have succeeded in identifying metabolites that are regulated by drought stress in an ABA-dependent and -independent manner. The findings of this study should be useful for future breeding of drought-tolerant wheat., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Weng et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2024
- Full Text
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46. Do Combined Oculomotor and Bimanual Coordination Exercises Instantly Stabilize Balance in Athletes?
- Author
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Matsuura Y, Sakairi Y, Sato H, and Takiura K
- Abstract
Purpose: This study examined the immediate effects of oculomotor and bimanual coordination exercises, as well as a combination of the two, on stability of balance in athletes., Patients and Methods: Changes in center-of-gravity sway were measured in 30 college student athletes before and after the following three exercise conditions: 1) oculomotor exercises, 2) bimanual coordination exercises, and 3) a combination of oculomotor and bimanual coordination exercises (1+2). The order of these exercises was counterbalanced., Results: The combination of exercises (condition 3) reduced large swaying during balancing and immediately increased postural stability. Moreover, the oculomotor and bimanual coordination exercises (conditions 1 and 2) immediately reduced large sway during balancing when performed independently. Thus, the present study revealed that the combination of oculomotor and bimanual coordination exercises immediately reduced accidental swaying during balancing and also improved postural stability., Conclusion: This combination could be effective as an immediate balance adjustment method for athletes., Competing Interests: The authors have no conflicts of interest directly relevant to the content of this article., (© 2024 Matsuura et al.)
- Published
- 2024
- Full Text
- View/download PDF
47. Chloroplast genome-based genetic resources via genome skimming for the subalpine forests of Japan and adjacent regions.
- Author
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Worth JRP, Kikuchi S, Kanetani S, Takahashi D, Aizawa M, Marchuk EA, Choi HJ, Polezhaeva MA, Sheiko VV, and Ueno S
- Abstract
The Japanese subalpine zone is dominated by an ecologically important forest biome, subalpine coniferous forest, constituting a distinct assemblage of cold-tolerant angiosperm and conifer species. While being relatively intact compared to other forest biomes in Japan, subalpine coniferous forests are under significant threat from deer browsing, global warming and small population size effects. However, there is a severe lack of genetic resources available for this biome's major constituent plant species. This study aimed to develop chloroplast genome-based genetic resources for 12 widespread subalpine tree and shrub species (7 angiosperms and 5 conifers) via genome skimming of whole-genomic DNA using short reads (100-150 bp in length). For 10 species, whole chloroplast genomes were assembled via de novo-based methods from 4 to 10 individuals per species sampled from across their ranges in Japan and, for non-Japanese endemic species, elsewhere in northeast Asia. A total of 566 single nucleotide polymorphisms for Japanese samples and 768 for all samples (varying from 2 to 202 per species) were identified which were distributed in geographically restricted lineages in most species. In addition, between 9 and 58 polymorphic simple sequence repeat regions were identified per species. For two Ericaceae species ( Rhododendron brachycarpum and Vaccinium vitis-idaea ) characterised by large chloroplast genomes, de novo assembly failed, but single nucleotide polymorphisms could be identified using reference mapping. These data will be useful for genetic studies of species taxonomic relationships, investigating phylogeographic patterns within species, developing chloroplast-based markers for conservation genetic studies and has potential application for studies of environmental and ancient DNA., Competing Interests: The authors declare no conflict of interest., (© 2024 The Author(s). Ecology and Evolution published by John Wiley & Sons Ltd.)
- Published
- 2024
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48. α,β-trehalose, an intracellular substance in resting cyst of colpodid ciliates as a key to environmental tolerances.
- Author
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Sogame Y, Ogata M, Hakozaki S, Saito Y, Suzuki T, Saito R, Suizu F, and Watanabe K
- Subjects
- Stress, Physiological, Glucosyltransferases metabolism, Glucosyltransferases genetics, Ciliophora metabolism, Ciliophora genetics, Trehalose metabolism, Trehalose analogs & derivatives
- Abstract
α,α-trehalose is a well-known sugar that plays a key role in establishing tolerance to environmental stresses in many organisms, except unicellular eukaryotes. However, almost nothing is known about α,β-trehalose, including their synthesis, function, and even presence in living organisms. In this study, we identified α,β-trehalose in the resting cyst, a dormancy cell form characterized by extreme tolerance to environmental stresses, of the ciliated protist Colpoda cucullus, using high-performance liquid chromatography (HPLC), and a proton nuclear magnetic resonance (
1 H NMR). Gene expression analysis revealed that the expression of trehalose-6-phosphate synthase (TPS), glycosyltransferase (GT), alpha-amylase (AMY), and trehalose transporter 1 (TRET1), were up-regulated in encystment, while the expression of α-glucosidase 2 (AG2) and trehalase (TREH) was up-regulated in excystment. These results suggest that α,β-trehalose is synthesized during encystment process, while and contributes to extreme tolerances to environmental stressors, stored carbohydrates, and energy reserve during resting cyst and/or during excystment., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Inc. All rights reserved.)- Published
- 2024
- Full Text
- View/download PDF
49. Teleost Hox code defines regional identities competent for the formation of dorsal and anal fins.
- Author
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Adachi U, Koita R, Seto A, Maeno A, Ishizu A, Oikawa S, Tani T, Ishizaka M, Yamada K, Satoh K, Nakazawa H, Furudate H, Kawakami K, Iwanami N, Matsuda M, and Kawamura A
- Subjects
- Animals, Gene Expression Regulation, Developmental, Body Patterning genetics, Fish Proteins genetics, Fish Proteins metabolism, Animal Fins, Oryzias genetics, Zebrafish genetics, Genes, Homeobox genetics, Homeodomain Proteins genetics, Homeodomain Proteins metabolism
- Abstract
The dorsal and anal fins can vary widely in position and length along the anterior-posterior axis in teleost fishes. However, the molecular mechanisms underlying the diversification of these fins remain unknown. Here, we used genetic approaches in zebrafish and medaka, in which the relative positions of the dorsal and anal fins are opposite, to demonstrate the crucial role of hox genes in the patterning of the teleost posterior body, including the dorsal and anal fins. By the CRISPR-Cas9-induced frameshift mutations and positional cloning of spontaneous dorsalfinless medaka, we show that various hox mutants exhibit the absence of dorsal or anal fins, or a stepwise posterior extension of these fins, with vertebral abnormalities. Our results indicate that multiple hox genes, primarily from hoxc -related clusters, encompass the regions responsible for the dorsal and anal fin formation along the anterior-posterior axis. These results further suggest that shifts in the anterior boundaries of hox expression which vary among fish species, lead to diversification in the position and size of the dorsal and anal fins, similar to how modulations in Hox expression can alter the number of anatomically distinct vertebrae in tetrapods. Furthermore, we show that hox genes responsible for dorsal fin formation are different between zebrafish and medaka. Our results suggest that a novel mechanism has occurred during teleost evolution, in which the gene network responsible for fin formation might have switched to the regulation downstream of other hox genes, leading to the remarkable diversity in the dorsal fin position., Competing Interests: Competing interests statement:The authors declare no competing interest.
- Published
- 2024
- Full Text
- View/download PDF
50. A method for detecting gene doping in horse sports without DNA extraction.
- Author
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Furukawa R, Tozaki T, Kikuchi M, Ishige T, Takahashi Y, Fukui E, and Kakoi H
- Abstract
Gene doping is prohibited in horse sports and can involve the administration of exogenous genes, called transgenes, to postnatal animals. Quantitative polymerase chain reaction (qPCR) methods have been developed to detect gene doping; however, these generally require DNA extraction from the plasma prior to qPCR. In this study, we developed two methods, direct droplet digital PCR (ddPCR) and nested ddPCR, to detect the equine erythropoietin (EPO) transgene without DNA extraction. Direct ddPCR used pretreated plasma and PCR to detect the EPO transgene spiked at 10 copies/μL. Nested ddPCR utilised pre-amplification using nontreated plasma, purification of PCR products and PCR to detect the EPO transgene spiked at 1 copy/μL in plasma. These methods successfully detected the EPO transgene after intramuscular injection into horses. Since each method has different detection sensitivity, the combined use of direct ddPCR for screening and nested ddPCR for confirmation may complement each other and prevent the occurrence of false positives, allowing the reliable detection of gene-doped substances. One advantage of these methods is the small amount of sample required, approximately 2.2-5.0 μl, owing to the lack of a DNA extraction step. Therefore, these tests could be applied to small volume samples as an alternative to conventional gene doping tests., (© 2024 John Wiley & Sons Ltd.)
- Published
- 2024
- Full Text
- View/download PDF
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