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We provide the raw acoustic data collected from the R/V Hesperides during the global Malaspina 2010 Spanish Circumnavigation Expedition (14th December 2010, Cádiz-14th July 2011, Cartagena) using a Simrad EK60 scientific echosounder operating at 38 and 120 kHz. The cruise was divided into seven legs: leg 1 (14th December 2010, Cádiz-13th January 2011, Rio de Janeiro), leg 2 (17th January 2011, Rio de Janeiro-6th February 2011, Cape Town), leg 3 (11th February 2011, Cape Town-13th March 2011, Perth), leg 4 (17th March 2011, Perth-30th March 2011, Sydney), leg 5 (16th April 2011, Auckland-8th May 2011, Honolulu), leg 6 (13th May 2011, Honolulu-10th June 2011, Cartagena de Indias) and leg 7 (19th June 2011, Cartagena de Indias-14th July 2011, Cartagena). The echosounder was calibrated at the start of the expedition and calibration parameters were updated in the data acquisition software (ER60) i.e., the logged raw data are calibrated. We also provide a data summary of the acoustic data in the form of post-processed products., Measurement(s)sound speedTechnology Type(s)echo sounderFactor Type(s)time • depth • latitude • longitudeSample Characteristic - OrganismMetazoaSample Characteristic - Environmentocean biome • tropical • subtropical • temperateSample Characteristic - Locationglobal Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.15097260

Identifying the role that environmental factors and biotic interactions play in species distribution can be essential to better understand and predict how ecosystems will respond to changing environmental conditions. This study aimed at disentangling the assemblage of the pelagic predator–prey community by identifying interspecific associations and their main drivers. For this purpose, we applied the joint species distribution modelling approach, JSDM, to the co-occurrence patterns of both prey and top predator communities obtained from JUVENA surveys during 2013–2016 in the Bay of Biscay. Results showed that the co-occurrence patterns of top predators and prey were driven by a combination of environmental and biotic factors, which highlighted the importance of considering both components to fully understand the community structure. In addition, results also revealed that many biotic interactions, such as schooling in prey (e.g. anchovy–sardine), local enhancement/facilitation in predators (e.g. Cory’s shearwater–fin whale), and predation between predator–prey species (e.g. northern gannet–horse mackerel), were led by positive associations, although predator avoidance behaviour was also suggested between negatively associated species (e.g. striped dolphin–blue whiting). The identification of interspecific associations can therefore provide insights on the functioning of predators–prey network and help advance towards an ecosystem-based management.

The JUVENA survey was funded by the ‘Viceconsejería de Agricultura, Pesca y Políticas Alimentarias ‐ Departamento de Desarrollo Económico y Sostenibilidad y Medio Ambiente’ of the Basque Government, the ‘Secretaría General de Pesca, Ministerio de Agricultura, Alimentación y Medio Ambiente’ of the Spanish Government and by the Spanish Institute of Oceanography (IEO). This research was funded by the Spanish Government (Ministry of Science and Innovation) through the CHALLENGES (CTM2013‐47032‐R) and the EPELECO (RTI2018‐101591‐B‐I00) projects, the Basque Government (‘Viceconsejería de Agricultura, Pesca y Políticas Alimentarias ‐ Departamento de Desarrollo Económico, Sostenibilidad y Medio Ambiente’) through the ECOPES project as well as the Horizon 2020 programme of the European Commission (Contract No. 862428, Atlantic Mission: Mapping and assessing present and future status of Atlantic marine ecosystems under climate change and exploitation). A.A. has benefited from a Basque Government scholarship (PRE_2016_1_0134) and M.L. from Ramón y Cajal funding (Ministerio de Ciencia e Innovación, RYC‐2012‐09897). Special thanks are given to the crew on board R/V Emma Bardán and R/V Ramón Margalef and all the AZTI and Spanish Institute of Oceanography (IEO) staff who participated in JUVENA surveys for their excellent job and collaborative support. This paper received contribution nº 1013 from AZTI, Marine Research, Basque Research and Technology Alliance (BRTA). Aim: Understanding the mechanisms that allow the coexistence of species is key to preserve full ecosystem functioning. In dynamic environments, the study of ecological niches faces the complexity associated to the three dimensionality of the habitat and requires information that reflects such heterogeneity. Within this context, this study intends to identify the segregation mechanisms behind the co-occurrence of five phylogenetically related pelagic birds by applying a functional perspective based on seabirds' vertical ranges and prey availability features such as depth and body size. Location: Bay of Biscay. Methods Based on the hypothesis that niche differentiation may occur in any of the three dimensions of the marine environment, we (a) identified the biologically meaningful vertical range affecting seabird species, (b) modelled their environmental and trophic niches, (c) estimated an environmental and trophic overlap index for each pairwise species, and (d) developed a conceptual framework with the most plausible segregation hypotheses. Results: The application of the conceptual framework revealed that in this particular area, pelagic birds coexist through environmental and trophic niche partitioning and potentially through vertical segregation, based on the different biologically meaningful vertical ranges we identified for each species. Indeed, some species responded to prey and oceanographic conditions on the surface (10 m), while others responded to the conditions on deeper waters (above the depth of maximum temperature gradient). These different responses could be interpreted as an additional mechanism to reduce competition, although seabirds diving records would be needed to contrast this hypothesis. Main conclusions: Niche differentiation was found to be primarily driven by trophic and environmental niche partitioning, although species were also influenced by conditions on the vertical dimension. Considering all the dimensions of the niche is essential to fully understand how diving seabirds coexist in dynamic systems and provides insights on species' 3D niches that may help advance into their management. Publisher PDF

WOS:000679270900003; International audience; Estimating bycatch is essential for monitoring the ecological impacts of a fishery in order to set management and mitigation priorities. Purse seine vessels targeting tropical tunas incidentally catch pelagic sharks (mainly silky and oceanic whitetip sharks), which are brought onboard and can be observed on the upper and lower decks. Currently, single onboard observers can only be efficiently stationed on one of the two decks, and thus often rely on information provided by the crew to complement their bycatch estimations. In this study, we used dedicated scientists strategically positioned during fishing sets in order to establish a reference count of captured sharks during conventional commercial fishing trips. We then assessed the accuracy of the counts made by (i) single observers onboard during the same fishing trips in the Pacific Ocean (where observers' main duty is to estimate catch of target species and bycatch estimation is of a lower priority) and the Atlantic Ocean (where observers' focus is on bycatch) and (ii) Electronic Monitoring System (EMS) in the Indian Ocean. A total of 74 fishing sets conducted during four purse seine fishing trips revealed that shark counts were underestimated for 50%-100% of the sets, with the mean shark count underestimation, at the fishing trip level, ranging from 9% to 40% (onboard observers) and 65% for EMS. Given the importance of monitoring populations of vulnerable species, we strongly encourage specific studies during which the complementary counts of two onboard observers are used simultaneously to assess the accuracy of various EMS configurations, bearing in mind that single onboard observers appear to underestimate the number of captured sharks.

The depth distribution of a major marine biomass component is determined by variation in water clarity., The deep scattering layer (DSL) is a ubiquitous acoustic signature found across all oceans and arguably the dominant feature structuring the pelagic open ocean ecosystem. It is formed by mesopelagic fishes and pelagic invertebrates. The DSL animals are an important food source for marine megafauna and contribute to the biological carbon pump through the active flux of organic carbon transported in their daily vertical migrations. They occupy depths from 200 to 1000 m at daytime and migrate to a varying degree into surface waters at nighttime. Their daytime depth, which determines the migration amplitude, varies across the global ocean in concert with water mass properties, in particular the oxygen regime, but the causal underpinning of these correlations has been unclear. We present evidence that the broad variability in the oceanic DSL daytime depth observed during the Malaspina 2010 Circumnavigation Expedition is governed by variation in light penetration. We find that the DSL depth distribution conforms to a common optical depth layer across the global ocean and that a correlation between dissolved oxygen and light penetration provides a parsimonious explanation for the association of shallow DSL distributions with hypoxic waters. In enhancing understanding of this phenomenon, our results should improve the ability to predict and model the dynamics of one of the largest animal biomass components on earth, with key roles in the oceanic biological carbon pump and food web.

Boyra, G., Martínez, U., Cotano, U., Santos, M., Irigoien, X., and Uriarte, A. 2013. Acoustic surveys for juvenile anchovy in the Bay of Biscay: abundance estimate as an indicator of the next year's recruitment and spatial distribution patterns. – ICES Journal of Marine Science, 70: . A series of acoustic surveys (JUVENA) began in 2003 targeting juvenile anchovy (Engraulis encrasicolus) in the Bay of Biscay. A specific methodology was designed for mapping and estimating juvenile abundance annually, four months after the spawning season. After eight years of the survey, a consistent picture of the spatial pattern of the juvenile anchovy has emerged. Juveniles show a vertical and horizontal distribution pattern that depends on size. The younger individuals are found isolated from other species in waters closer to the surface, mainly off the shelf within the mid-southern region of the bay. The largest juveniles are usually found deeper and closer to the shore in the company of adult anchovy and other pelagic species. In these eight years, the survey has covered a wide range of juvenile abundances, and the estimates show a significant positive relationship between the juvenile biomasses and the one-year-old recruits of the following year. This demonstrates that the JUVENA index provides an early indication of the strength of next year's recruitment to the fishery and can therefore be used to improve the management advice for the fishery of this short-lived species.

Xabier Irigoien et al., With a current estimate of ~1,000 million tons, mesopelagic fishes likely dominate the world total fishes biomass. However, recent acoustic observations show that mesopelagic fishes biomass could be significantly larger than the current estimate. Here we combine modelling and a sensitivity analysis of the acoustic observations from the Malaspina 2010 Circumnavigation Expedition to show that the previous estimate needs to be revised to at least one order of magnitude higher. We show that there is a close relationship between the open ocean fishes biomass and primary production, and that the energy transfer efficiency from phytoplankton to mesopelagic fishes in the open ocean is higher than what is typically assumed. Our results indicate that the role of mesopelagic fishes in oceanic ecosystems and global ocean biogeochemical cycles needs to be revised as they may be respiring ~10% of the primary production in deep waters., This research was conducted by the Malaspina 2010 Expedition project, funded by the Spanish Ministry of Economy and Competitiveness (Consolider-Ingenio 2010, CSD2008-00077). Additional financial support was provided by the Basque Country Government and by AZTI-Tecnalia