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1. The complete DNA sequence of yeast chromosome III

Author

Oliver, S.G., van der Aart, Q.J.M., Agostoni-Carbone, M.L., Aigle, M., Alberghina, L., Alexandraki, D., Antoine, G., Anwar, R., Ballesta, J.P.G., Benit, P., Berben, G., Bergantino, E., Biteau, N., Bolle, P.A., Bolotin-Fukuhara, M., Brown, A., Brown, A.J.P., Buhler, J.M., Carcano, C., Carignani, G., Cederberg, H., Chanet, R., Contreras, R., Crouzet, M., Daignan-Fornier, B., Defoor, E., Delgado, M., Demolder, J., Doira, C., Dubois, E., Dujon, B., Dusterhoft, A., Erdmann, D., Esteban, M., Fabre, F., Fairhead, C., Faye, G., Feldmann, H., Fiers, W., Francingues-Gaillard, M.C., Franco, L., Frontali, L., Fukuhara, H., Fuller, L.J., Galland, P., Gent, M.E., Gigot, D., Gilliquet, V., Glansdorff, N., Goffeau, A., Grenson, M., Grisanti, P., Grivell, L.A., de Haan, M., Haasemann, M., Hatat, D., Hoenicka, J., Hegemann, J., Herbert, C.J., Hilger, F., Hohmann, S., Hollenberg, C.P., Huse, K., Iborra, F., Indge, K.J., Isono, K., Jacq, C., Jacquet, M., James, C.M., Jauniaux, J.C., Jia, Y., Jimenez, A., Kelly, A., Kleinhans, U., Kreisl, P., Lanfranchi, G., Lewis, C., van der Linden, C.G., Lucchini, G., Lutzenkirchen, K., Maat, M.J., Mallet, L., Mannhaupt, G., Martegani, E., Mathieu, A., Maurer, C.T.C., McConnell, D., McKee, R.A., Messenguy, F., Mewes, H.W., Molemans, F., Montague, M.A., Muzi Falconi, M., Navas, L., Newlon, C.S., Noone, D., Pallier, C., Panzeri, L., Pearson, B.M., Perea, J., Philippsen, P., Pierard, A., Planta, R.J., Plevani, P., Poetsch, B., Pohl, F., Purnelle, B., Ramezani Rad, M., Rasmussen, S.W., Raynal, A., Remacha, M., Richterich, P., Roberts, A.B., Rodriguez, F., Sanz, E., Schaaff-Gerstenschlager, I., Scherens, B., Schweitzer, B., Shu, Y., Skala, J., Slonimski, P.P., Sor, F., Soustelle, C., Spiegelberg, R., Stateva, L.I., Steensma, H.Y., Steiner, S., Thierry, A., Thireos, G., Tzermia, M., Urrestarazu, L.A., Valle, G., Vetter, I., van Vliet-Reedijk, J.C., Voet, M., Volckaert, G., Vreken, P., Wang, H., Warmington, J.R., von Wettstein, D., Wicksteed, B.L., Wilson, C., Wurst, H., Xu, G., Yoshikawa, A., Zimmermann, F.K., and Sgouros, J.G.

Subjects
Saccharomyces -- Genetic aspects, Nucleotide sequence -- Research, Plant chromosomes -- Research, Genomes -- Research, Environmental issues, Science and technology, Zoology and wildlife conservation
Published
1992

2. The Yeast Genome Directory

Author

Goffeau, A., Aert, R., Agostini-Carbone, M. L., Ahmed, A., Aigle, M., Alberghina, L., Albermann, K., Albers, M., Aldea, M., Alexandraki, D., Aljinovic, G., Allen, E., Alt-Mörbe, J., André, B., Andrews, S., Ansorge, W., Antoine, G., Anwar, R., Aparicio, A., Araujo, R., Arino, J., Arnold, F., Arroyo, J., Aviles, E., Backes, U., Baclet, M. C., Badcock, K., Bahr, A., Baladron, V., Ballesta, J. P. G., Bankier, A. T., Banrevi, A., Bargues, M., Baron, L., Barreiros, T., Barrell, B. G., Barthe, C., Barton, A. B., Baur, A., Bécam, A.-M., Becker, A., Becker, I., Beinhauer, J., Benes, V., Benit, P., Berben, G., Bergantino, E., Bergez, P., Berno, A., Bertani, I., Biteau, N., Bjourson, A. J., Blöcker, H., Blugeon, C., Bohn, C., Boles, E., Bolle, P. A., Bolotin-Fukuhara, M., Bordonné, R., Boskovic, J., Bossier, P., Botstein, D., Bou, G., Bowman, S., Boyer, J., Brandt, P., Brandt, T., Brendel, M., Brennan, T., Brinkman, R., Brown, A., Brown, A. J. P., Brown, D., Brückner, M., Bruschi, C. V., Buhler, J. M., Buitrago, M. J., Bussereau, F., Bussey, H., Camasses, A., Carcano, C., Carignani, G., Carpenter, J., Casamayor, A., Casas, C., Castagnoli, L., Cederberg, H., Cerdan, E., Chalwatzis, N., Chanet, R., Chen, E., Chéret, G., Cherry, J. M., Chillingworth, T., Christiansen, C., Chuat, J.-C., Chung, E., Churcher, C., Churcher, C. M., Clark, M. W., Clemente, M. L., Coblenz, A., Coglievina, M., Coissac, E., Colleaux, L., Connor, R., Contreras, R., Cooper, J., Copsey, T., Coster, F., Coster, R., Couch, J., Crouzet, M., Cziepluch, C., Daignan-Fornier, B., Dal Paro, F., Dang, D. V., D’Angelo, M., Davies, C. J., Davis, K., Davis, R. W., De Antoni, A., Dear, S., Dedman, K., Defoor, E., De Haan, M., Delaveau, Th., Del Bino, S., Delgado, M., Delius, H., Delneri, D., Del Rey, F., Demolder, J., Démolis, N., Devlin, K., de Wergifosse, P., Dietrich, F. S., Ding, H., Dion, C., Dipaolo, T., Doignon, F., Doira, C., Domdey, H., Dover, J., Du, Z., Dubois, E., Dujon, B., Duncan, M., Durand, P., Düsterhöft, A., Düsterhus, S., Eki, T., El Bakkoury, M., Eide, L. G., Entian, K.-D., Eraso, P., Erdmann, D., Erfle, H., Escribano, V., Esteban, M., Fabiani, L., Fabre, F., Fairhead, C., Fartmann, B., Favello, A., Faye, G., Feldmann, H., Fernandes, L., Feroli, F., Feuermann, M., Fiedler, T., Fiers, W., Fleig, U. N., Flöth, M., Fobo, G. M., Fortin, N., Foury, F., Francingues-Gaillard, M. C., Franco, L., Fraser, A., Friesen, J.D., Fritz, C., Frontali, L., Fukuhara, H., Fulton, L., Fuller, L. J., Gabel, C., Gaillardin, C., Gaillon, L., Galibert, F., Galisson, F., Galland, P., Gamo, F.-J., Gancedo, C., Garcia-Cantalejo, J. M., García-Gonzalez, M. I., Garcia-Ramirez, J. J., García-Saéz, M., Gassenhuber, H., Gatius, M., Gattung, S., Geisel, C., Gent, M. E., Gentles, S., Ghazvini, M., Gigot, D., Gilliquet, V., Glansdorff, N., Gómez-Peris, A., Gonzaléz, A., Goulding, S. E., Granotier, C., Greco, T., Grenson, M., Grisanti, P., Grivell, L. A., Grothues, D., Gueldener, U., Guerreiro, P., Guzman, E., Haasemann, M., Habbig, B., Hagiwara, H., Hall, J., Hallsworth, K., Hamlin, N., Hand, N. J., Hanemann, V., Hani, J., Hankeln, T., Hansen, M., Harris, D., Harris, D. E., Hartzell, G., Hatat, D., Hattenhorst, U., Hawkins, J., Hebling, U., Hegemann, J., Hein, C., Hennemann, A., Hennessy, K., Herbert, C. J., Hernandez, K., Hernando, Y., Herrero, E., Heumann, K., Heuss- Neitzel, D., Hewitt, N., Hiesel, R., Hilbert, H., Hilger, F., Hillier, L., Ho, C., Hoenicka, J., Hofmann, B., Hoheisel, J., Hohmann, S., Hollenberg, C. P., Holmstrøm, K., Horaitis, O., Horsnell, T. S., Huang, M.-E., Hughes, B., Hunicke-Smith, S., Hunt, S., Hunt, S. E., Huse, K., Hyman, R. W., Iborra, F., Indge, K. J., Iraqui Houssaini, I., Isono, K., Jacq, C., Jacquet, M., Jacquier, A., Jagels, K., Jäger, W., James, C. M., Jauniaux, J. C., Jia, Y., Jier, M., Jimenez, A., Johnson, D., Johnston, L., Johnston, M., Jones, M., Jonniaux, J.-L., Kaback, D. B., Kallesøe, T., Kalman, S., Kalogeropoulos, A., Karpfinger-Hartl, L., Kashkari, D., Katsoulou, C., Kayser, A., Kelly, A., Keng, T., Keuchel, H., Kiesau, P., Kirchrath, L., Kirsten, J., Kleine, K., Kleinhans, U., Klima, R., Komp, C., Kordes, E., Korol, S., Kötter, P., Krämer, C., Kramer, B., Kreisl, P., Kucaba, T., Kuester, H., Kurdi, O., Laamanen, P., Lafuente, M. J., Landt, O., Lanfranchi, G., Langston, Y., Lashkari, D., Latreille, P., Lauquin, G., Le, T., Legrain, P., Legros, Y., Lepingle, A., Lesveque, H., Leuther, H., Lew, H., Lewis, C., Li, Z. Y., Liebl, S., Lin, A., Lin, D., Logghe, M., Lohan, A. J. E., Louis, E. J., Lucchini, G., Lutzenkirchen, K., Lyck, R., Lye, G., Maarse, A. C., Maat, M. J., Macri, C., Madania, A., Maftahi, M., Maia e Silva, A., Maillier, E., Mallet, L., Mannhaupt, G., Manus, V., Marathe, R., Marck, C., Marconi, A., Mardis, E., Martegani, E., Martin, R., Mathieu, A., Maurer, C. T. C., Mazón, M. J., Mazzoni, C., McConnell, D., McDonald, S., McKee, R. A., McReynolds, A. D. K., Melchioretto, P., Menezes, S., Messenguy, F., Mewes, H. W., Michaux, G., Miller, N., Minenkova, O., Miosga, T., Mirtipati, S., Möller-Rieker, S., Möstl, D., Molemans, F., Monnet, A., Monnier, A-L., Montague, M. A., Moro, M., Mosedale, D., Möstl, D., Moule, S., Mouser, L., Murakami, Y., Müller-Auer, S., Mulligan, J., Murphy, L., Muzi Falconi, M., Naitou, M., Nakahara, K., Namath, A., Nasr, F., Navas, L., Nawrocki, A., Nelson, J., Nentwich, U., Netter, P., Neu, R., Newlon, C. S., Nhan, M., Nicaud, J.-M., Niedenthal, R. K., Nombela, C., Noone, D., Norgren, R., Nußbaumer, B., Obermaier, B., Odell, C., Öfner, P., Oh, C., Oliver, K., Oliver, S. G., Ouellette, B. F., Ozawa, M., Paces, V., Pallier, C., Pandolfo, D., Panzeri, L., Paoluzi, S., Parle-Mcdermott, A. G., Pascolo, S., Patricio, N., Pauley, A., Paulin, L., Pearson, B. M., Pearson, D., Peluso, D., Perea, J., Pérez-Alonso, M., Pérez-Ortin, J. E., Perrin, A., Petel, F. X., Pettersson, B., Pfeiffer, F., Philippsen, P., Piérard, A., Piravandi, E., Planta, R. J., Plevani, P., Poch, O., Poetsch, B., Pohl, F. M., Pohl, T. M., Pöhlmann, R., Poirey, R., Portetelle, D., Portillo, F., Potier, S., Proft, M., Prydz, H., Pujol, A., Purnelle, B., Puzos, V., Rajandream, M. A., Ramezani Rad, M., Rasmussen, S. W., Raynal, A., Rechmann, S., Remacha, M., Revuelta, J. L., Rice, P., Richard, G-F., Richterich, P., Rieger, M., Rifken, L., Riles, L., Rinaldi, T., Rinke, M., Roberts, A. B., Roberts, D., Rodriguez, F., Rodriguez-Belmonte, E., Rodriguez-Pousada, C., Rodriguez-Torres, A. M., Rose, M., Rossau, R., Rowley, N., Rupp, T., Ruzzi, M., Saeger, W., Saiz, J. E., Saliola, M., Salom, D., Saluz, H. P., Sánchez-Perez, M., Santos, M. A., Sanz, E., Sanz, J. E., Saren, A.-M., Sartorello, F., Sasanuma, M., Sasanuma, S-I., Scarcez, T., Schaaf-Gerstenschläger, I., Schäfer, B., Schäfer, M., Scharfe, M., Scherens, B., Schroff, N., Sen-Gupta, M., Shibata, T., Schmidheini, T., Schmidt, E. R., Schneider, C., Scholler, P., Schramm, S., Schreer, A., Schröder, M., Schwager, C., Schwarz, S., Schwarzlose, C., Schweitzer, B., Schweizer, M., Sdicu, A-M., Sehl, P., Sensen, C., Sgouros, J. G., Shogren, T., Shore, L., Shu, Y., Skala, J., Skelton, J., Slonimski, P. P., Smit, P. H. M., Smith, V., Soares, H., Soeda, E., Soler-Mira, A., Sor, F., Soriano, N., Souciet, J. L., Soustelle, C., Spiegelberg, R., Stateva, L. I., Steensma, H. Y., Stegemann, J., Steiner, S., Stellyes, L., Sterky, F., Storms, R. K., St. Peter, H., Stucka, R., Taich, A., Talla, E., Tarassov, I., Tashiro, H., Taylor, P., Teodoru, C., Tettelin, H., Thierry, A., Thireos, G., Tobiasch, E., Tovan, D., Trevaskis, E., Tsuchiya, Y., Tzermia, M., Uhlen, M., Underwood, A., Unseld, M., Urbanus, J. H. M., Urrestarazu, A., Ushinsky, S., Valens, M., Valle, G., Van Broekhoven, A., Vandenbol, M., Van Der Aart, Q. J. M., Van Der Linden, C. G., Van Dyck, L., Vanoni, M., Van Vliet-Reedijk, J. C., Vassarotti, A., Vaudin, M., Vaughan, K., Verhasselt, P., Vetter, I., Vierendeels, F., Vignati, D., Vilela, C., Vissers, S., Vleck, C., Vo, D. T., Vo, D. H., Voet, M., Volckaert, G., Von Wettstein, D., Voss, H., Vreken, P., Wagner, G., Walsh, S. V., Wambutt, R., Wang, H., Wang, Y., Warmington, J. R., Waterston, R., Watson, M. D., Weber, N., Wedler, E., Wedler, H., Wei, Y., Whitehead, S., Wicksteed, B. L., Wiemann, S., Wilcox, L., Wilson, C., Wilson, R., Winant, A., Winnett, E., Winsor, B., Wipfli, P., Wölfl, S., Wohldman, P., Wolf, K., Wolfe, K. H., Wright, L. F., Wurst, H., Xu, G., Yamasaki, M., Yelton, M. A., Yokohama, K., Yoshikawa, A., Yuping, S., Zaccaria, P., Zagulski, M., Zimmermann, F. K., Zimmermann, J., Zimmermann, M., Zhong, W-W., Zollner, A., and Zumstein, E.

Published
1997
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3. The complete sequence of the yeast chromosome III

Author

Oliver, S. G., van der Aart, Q. J. M., Agostoni Carbone, M. L., Aigle, M., Alberghina, L., Alexandraki, D., Antoine, G., Anwar, R., Ballesta, J. P. G., Benit, P., Berben, G., Bergantino, Elisabetta, Biteau, N., Bolle, P. A., Bolotin Fukuhara, M., Brown, A., Brown, A. J. P., Buhler, J. M., Carcano, C., Carignani, G., Cederberg, H., Chanet, R., Contreras, R., Crouzet, M., Daignan Fornier, B., Defoor, E., Delgado, M., Demolder, J., Doira, C., Dubois, E., Dujon, B., Dusterhoft, A., Erdmann, D., Esteban, M., Fabre, F., Fairhead, C., Faye, G., Feldmann, H., Fiers, W., Francingues Gaillard, M. C., Franco, L., Frontali, L., Fukuhara, H., Fuller, L. J., Galland, P., Gent, M. E., Gigot, D., Gilliquet, V., Glansdorff, N., Goffeau, A., Grenson, M., Grisanti, P., Grivell, L. A., de Haan, M., Haasemann, M., Hatat, D., Hoenicka, J., Hegemann, J., Herbert, C. J., Hilger, F., Hohmann, S., Hollenberg, C. P., Huse, K., Iborra, F., Indje, K. J., Isono, K., Jacq, C., Jacquet, M., James, C. M., Jauniaux, J. C., Jia, Y., Jimenez, A., Kelly, A., Kleinhans, U., Kreisl, P., Lanfranchi, Gerolamo, Lewis, C, Vanderlinden, C. G., Lucchini, G., Lutzenkirchen, K, Maat, M. J., Mallet, L., Mannhaupet, G., Martegani, E., Mathieu, A., Maurer, C. T. C., Mcconnell, D., Mckee, R. A., Messenguy, F., Mewes, H. W., Molemans, F., Montague, M. A., Muzi Falconi, M., Navas, L., Newlon, C. S., Noone, D., Pallier, C., Panzeri, L., Pearson, B. M., Perea, J., Philippsen, P., Pierard, A., Planta, R. J., Plevani, P., Poetsch, B., Pohl, F., Purnelle, B., Ramezani Rad, M., Rasmussen, S. W., Raynal, A., Remacha, M., Richterich, P., Roberts, A. B., Rodriguez, F., Sanz, E., Schaaff Gerstenschlager, I., Scherens, B., Schweitzer, B., Shu, Y., Skala, J., Slonimski, P. P., Sor, F., Soustelle, C., Spiegelberg, R., Stateva, L. I., Steensma, S., Steiner, H. Y., Thierry, A., Thireos, G., Tzermia, M., Urrestarazu, L. A., Valle, Giorgio, Vetter, I., van Vliet Reedijk, J. C., Voet, M., Volckaert, G., Vreken, P., Wang, H., Warmington, J. R., von Wettstein, D., Wicksteed, B. L., Wilson, C., Wurst, H., Xu, G., Yoshikawa, A., Zimmermann, F. K., and Sgouros, J. G.

Published
1992

4. The nucleotide sequence of Saccharomyces cerevisiae chromosome XV

Author

Dujon, B, Albermann, K, Aldea, M, Alexandraki, D, Ansorge, W, Arino, J, Benes, V, Bohn, C, BolotinFukuhara, M, Bordonne, R, Boyer, J, Camasses, A, Casamayor, A, Casas, C, Cheret, G, Cziepluch, C, DaignanFornier, B, Dang, V, deHaan, M, Delius, H, Durand, P, Fairhead, C, Feldmann, H, Gaillon, L, Galisson, F, Gamo, J, Gancedo, C, Goffeau, A, Goulding, E, Grivell, A, Habbig, B, Hand, J, Hani, J, Hattenhorst, U, Hebling, U, Hernando, Y, Herrero, E, Heumann, K, Hiesel, R, Hilger, F, Hofmann, B, Hollenberg, P, Hughes, B, Jauniaux, C, Kalogeropoulos, A, Katsoulou, C, Kordes, E, Lafuente, J, Landt, O, Louis, J, Maarse, C, Madania, A, Mannhaupt, G, Marck, C, Martin, P, Mewes, W, Michaux, G, Paces, V, ParleMcDermott, G, Pearson, M, Perrin, A, Pettersson, B, Poch, O, Pohl, M, Poirey, R, Portetelle, D, Pujol, A, Purnelle, B, Rad, R, Rechmann, S, Schwager, C, Schweizer, M, Sor, F, Sterky, Fredrik, Tarassov, A, Teodoru, C, Tettelin, H, Thierry, A, Tobiasch, E, Tzermia, M, Uhlen, Mathias, Unseld, M, Valens, M, Vandenbol, M, Vetter, I, Vicek, C, Voet, M, Volckaert, G, Voss, H, Wambutt, R, Wedler, H, Wiemann, S, Winsor, B, Wolfe, H, Zollner, A, Zumstein, E, Kleine, K, Dujon, B, Albermann, K, Aldea, M, Alexandraki, D, Ansorge, W, Arino, J, Benes, V, Bohn, C, BolotinFukuhara, M, Bordonne, R, Boyer, J, Camasses, A, Casamayor, A, Casas, C, Cheret, G, Cziepluch, C, DaignanFornier, B, Dang, V, deHaan, M, Delius, H, Durand, P, Fairhead, C, Feldmann, H, Gaillon, L, Galisson, F, Gamo, J, Gancedo, C, Goffeau, A, Goulding, E, Grivell, A, Habbig, B, Hand, J, Hani, J, Hattenhorst, U, Hebling, U, Hernando, Y, Herrero, E, Heumann, K, Hiesel, R, Hilger, F, Hofmann, B, Hollenberg, P, Hughes, B, Jauniaux, C, Kalogeropoulos, A, Katsoulou, C, Kordes, E, Lafuente, J, Landt, O, Louis, J, Maarse, C, Madania, A, Mannhaupt, G, Marck, C, Martin, P, Mewes, W, Michaux, G, Paces, V, ParleMcDermott, G, Pearson, M, Perrin, A, Pettersson, B, Poch, O, Pohl, M, Poirey, R, Portetelle, D, Pujol, A, Purnelle, B, Rad, R, Rechmann, S, Schwager, C, Schweizer, M, Sor, F, Sterky, Fredrik, Tarassov, A, Teodoru, C, Tettelin, H, Thierry, A, Tobiasch, E, Tzermia, M, Uhlen, Mathias, Unseld, M, Valens, M, Vandenbol, M, Vetter, I, Vicek, C, Voet, M, Volckaert, G, Voss, H, Wambutt, R, Wedler, H, Wiemann, S, Winsor, B, Wolfe, H, Zollner, A, Zumstein, E, and Kleine, K

Abstract

Chromosome XV was one of the last two chromosomes of Saccharomyces cerevisiae to be discovered(1). It is the third-largest yeast chromosome after chromosomes XII and IV, and is very similar in size to chromosome VII. It alone represents 9% of the yeast genome (8% if ribosomal DNA is included). When systematic sequencing of chromosome XV was started, 93 genes or markers were identified, and most of them were mapped(2). However, very little else was known about chromosome XV which, in contrast to shorter chromosomes, had not been the object of comprehensive genetic or molecular analysis. It was therefore decided to start sequencing chromosome XV only in the third phase of the European Yeast Genome Sequencing Programme, after experience was gained on chromosomes III, XI and II (refs 3-5). The sequence of chromosome XV has been determined from a set of partly overlapping cosmid clones derived from a unique yeast strain, and physically mapped at 3.3-kilobase resolution before sequencing. As well as numerous new open reading frames (ORFs) and genes encoding tRNA or small RNA molecules, the sequence of 1,091,283 base pairs confirms the high proportion of orphan genes and reveals a number of ancestral and successive duplications with other yeast chromosomes., QC 20100812

Published
1997
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5. The nucleotide sequence of Saccharomyces cerevisiae chromosome XV

Author

Dujon, B., primary, Albermann, K., additional, Aldea, M., additional, Alexandraki, D., additional, Ansorge, W., additional, Arino, J., additional, Benes, V., additional, Bohn, C., additional, Bolotin-Fukuhara, M., additional, Bordonné, R., additional, Boyer, J., additional, Camasses, A., additional, Casamayor, A., additional, Casas, C., additional, Chéret, G., additional, Cziepluch, C., additional, Daignan-Fornier, B., additional, Dang, D. V., additional, de Haan, M., additional, Delius, H., additional, Durand, P., additional, Fairhead, C., additional, Feldmann, H., additional, Gaillon, L., additional, Galisson, F., additional, Gamo, F.-J., additional, Gancedo, C., additional, Goffeau, A., additional, Goulding, S. E., additional, Grivell, L. A., additional, Habbig, B., additional, Hand, N. J., additional, Hani, J., additional, Hattenhorst, U., additional, Hebling, U., additional, Hernando, Y., additional, Herrero, E., additional, Heumann, K., additional, Hiesel, R., additional, Hilger, F., additional, Hofmann, B., additional, Hollenberg, C. P., additional, Hughes, B., additional, Jauniaux, J.-C., additional, Kalogeropoulos, A., additional, Katsoulou, C., additional, Kordes, E., additional, Lafuente, M. J., additional, Landt, O., additional, Louis, E. J., additional, Maarse, A. C., additional, Madania, A., additional, Mannhaupt, G., additional, Marck, C., additional, Martin, R. P., additional, Mewes, H. W., additional, Michaux, G., additional, Paces, V., additional, Parle-McDermott, A. G., additional, Pearson, B. M., additional, Perrin, A., additional, Pettersson, B., additional, Poch, O., additional, Pohl, T. M., additional, Poirey, R., additional, Portetelle, D., additional, Pujol, A., additional, Purnelle, B., additional, Ramezani Rad, M., additional, Rechmann, S., additional, Schwager, C., additional, Schweizer, M., additional, Sor, F., additional, Sterky, F., additional, Tarassov, I. A., additional, Teodoru, C., additional, Tettelin, H., additional, Thierry, A., additional, Tobiasch, E., additional, Tzermia, M., additional, Uhlen, M., additional, Unseld, M., additional, Valens, M., additional, Vandenbol, M., additional, Vetter, I., additional, Vlcek, C., additional, Voet, M., additional, Volckaert, G., additional, Voss, H., additional, Wambutt, R., additional, Wedler, H., additional, Wiemann, S., additional, Winsor, B., additional, Wolfe, K. H., additional, Zollner, A., additional, Zumstein, E., additional, and Kleine, K., additional

Published
1997
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6. Complete DNA sequence of yeast chromosome XI

Author

Dujon, B., primary, Alexandraki, D., additional, André, B., additional, Ansorge, W., additional, Baladron, V., additional, Ballesta, J. P. G., additional, Banrevi, A., additional, Bolle, P. A., additional, Bolotin-Fukuhara, M., additional, Bossier, P., additional, Bou, G., additional, Boyer, J., additional, Buitrago, M. J., additional, Cherét, G., additional, Colleaux, L., additional, Dalgnan-Fornier, B., additional, del Rey, F., additional, Dion, C., additional, Domdey, H., additional, Düsterhöft, A., additional, Düsterhus, S., additional, Entian, K.-D., additional, Erfle, H., additional, Esteban, P. F., additional, Feldmann, H., additional, Fernandes, L., additional, Fobo, G. M., additional, Fritz, C., additional, Fukuhara, H., additional, Gabel, C., additional, Gaillon, L., additional, Carcia-Cantalejo, J. M., additional, Garcia-Ramirez, J. J., additional, Gent, M. E., additional, Ghazvini, M., additional, Goffeau, A., additional, Gonzaléz, A., additional, Grothues, D., additional, Guerreiro, P., additional, Hegemann, J., additional, Hewitt, N., additional, Hilger, F., additional, Hollenberg, C. P., additional, Horaitis, O., additional, Indge, K. J., additional, Jacquier, A., additional, James, C. M., additional, Jauniaux, J. C., additional, Jimenez, A., additional, Keuchel, H., additional, Kirchrath, L., additional, Kleine, K., additional, Kötter, P., additional, Legrain, P., additional, Liebl, S., additional, Louis, E. J., additional, Maia e Silva, A., additional, Marck, C., additional, Monnier, A.-L., additional, Möstl, D., additional, Müller, S., additional, Obermaier, B., additional, Oliver, S. G., additional, Pallier, C., additional, Pascolo, S., additional, Pfeiffer, F., additional, Philippsen, P., additional, Planta, R. J., additional, Pohl, F. M., additional, Pohl, T. M., additional, Pöhlmann, R., additional, Portetelle, D., additional, Purnelle, B., additional, Puzos, V., additional, Rad, M. Ramezani, additional, Rasmussen, S. W., additional, Remacha, M., additional, Revuelta, J. L., additional, Richard, G.-F., additional, Rieger, M., additional, Rodrigues-Pousada, C., additional, Rose, M., additional, Rupp, T., additional, Santos, M. A., additional, Schwager, C., additional, Sensen, C., additional, Skala, J., additional, Soares, H., additional, Sor, F., additional, Stegemann, J., additional, Tettelin, H., additional, Thierry, A., additional, Tzermia, M., additional, Urrestarazu, L. A., additional, van Dyck, L., additional, van Vliet-Reedijk, J. C., additional, Valens, M., additional, Vandenbo, M., additional, Vilela, C., additional, Vissers, S., additional, von Wettstein, D., additional, Voss, H., additional, Wiemann, S., additional, Xu, G., additional, Zimmermann, J., additional, Haasemann, M., additional, Becker, I., additional, and Mewes, H. W., additional

Published
1994
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8. Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X

Author

Galibert, F., Alexandraki, D., Baur, A., Boles, E., Chalwatzis, N., Chuat, Jc, Coster, F., Cziepluch, C., Dehaan, M., Domdey, H., Durand, P., Entian, Kd, Gatius, M., Goffeau, A., Grivell, La, Hennemann, A., Herbert, Cj, Heumann, K., Hilger, F., Hollenberg, Cp, Huang, Me, Jacq, C., Jauniaux, Jc, Katsoulou, C., Kirchrath, L., Kleine, K., Kordes, E., Kotter, P., Liebl, S., Louis, Ej, Manus, V., Mewes, Hw, Miosga, T., Obermaier, B., Perea, J., Pohl, T., Portetelle, D., Aurora Pujol, Purnelle, B., Rad, MR, Rasmussen, Sw, Rose, M., Rossau, R., Schaaffgerstenschlager, I., Smits, Phm, Scarcez, T., Soriano, N., Tovan, D., Tzermia, M., Vanbroekhoven, A., Vandenbol, M., Wedler, H., Wettstein, D., Wambutt, R., Zagulski, M., Zollner, A., and Karpfingerhartl, L.

9. Functional analysis of the Saccharomyces cerevisiae YFR021w/YGR223c/YPL100w ORF family suggests relations to mitochondrial/peroxisomal functions and amino acid signalling pathways.

Author

Georgakopoulos T, Koutroubas G, Vakonakis I, Tzermia M, Prokova V, Voutsina A, and Alexandraki D

Subjects
Amino Acid Sequence, Mitochondria physiology, Molecular Sequence Data, Mutagenesis, Insertional genetics, Mutagenesis, Insertional physiology, Open Reading Frames genetics, Open Reading Frames radiation effects, Peroxisomes physiology, Phenotype, Plasmids genetics, Plasmids physiology, Saccharomyces cerevisiae growth & development, Saccharomyces cerevisiae physiology, Sequence Alignment, Sequence Homology, Amino Acid, Two-Hybrid System Techniques, Gene Expression Regulation, Fungal, Open Reading Frames physiology, Saccharomyces cerevisiae genetics
Abstract

Saccharomyces cerevisiae YFR021w, YGR223c and YPL100w are paralogous ORFs of unknown function. Phenotypic analysis of overexpression, single-, double- and triple-ORF deletion strains under various growth conditions indicated mitochondria-related functions for all three ORFs. Two-hybrid screens of a yeast genomic library identified potentially interacting proteins for the three ORFs. Among these, the transcriptional activator Rtg3p interacted with both Yfr021wp and Ypl100wp and both ORF single deletions reduced the constitutive expression of the RTG-regulated CIT2 and DLD3 genes and caused typical retrograde response of CIT2 and DLD3 under growth conditions requiring functional mitochondria, indicating that YFR021w and YPL100w are also involved in unidentified mitochondrial functions. Ptr3p, a component of the amino acid sensor Ssy1p/Ptr3p, was also found as a two-hybrid interactant of Yfr021wp. Of the three single-ORF deletions, ypl100w Delta exhibited ptr3 Delta-similar phenotypes. These findings, combined with the fact that RTG-dependent expression is modulated by specific amino acids, suggested possible relations of Yfr021wp and Ypl100wp to amino acid signalling pathways. Under most conditions examined, the effects of the single- and double-ORF deletions indicated that YFR021w, YPL100w and YGR223c are not parts of the same pathway. We found no unique phenotype attributed to the deletion of YGR223c. However, its function interferes with the function of the other two ORFs, as revealed by the effects of double- and triple-ORF deletions., (Copyright 2001 John Wiley & Sons, Ltd.)

Published
2001
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10. Sequence analysis of a 33.2 kb segment from the left arm of yeast chromosome XV reveals eight known genes and ten new open reading frames including homologues of ABC transporters, inositol phosphatases and human expressed sequence tags.

Author

Tzermia M, Katsoulou C, and Alexandraki D

Subjects
Animals, Base Sequence, Chromosomes, Fungal, DNA, Fungal, Gene Expression, Humans, Molecular Sequence Data, Sequence Analysis, DNA, ATP-Binding Cassette Transporters genetics, DNA, Complementary, Genes, Fungal, Open Reading Frames, Phosphoric Monoester Hydrolases genetics
Abstract

The complete nucleotide sequence of a 33221 bp segment, contained in cosmid pEOA1044, derived from the left arm of chromosome XV of Saccharomyces cerevisiae, appears in public databases between coordinates 177013 and 210234 (http://speedy.mips.biochem.mpg.de/). Computer analysis of that sequence revealed the presence of the previously known genes IRA2, DEC1, NUF2, HST1, RTG1, RIB2 and HAL2, one previously partially sequenced open reading frame (ORF) of unknown function (SCORFAC) and ten newly identified ORFs. One of the new ORFs is similar to the Drosophila melanogaster white gene and other transmembrane ABC transporters, another one has similarities to inositol phosphatases and others are similar to ORFs of unknown function from various organisms, including human Expressed Sequence Tags (ESTs). Potential transmembrane regions, ATP/GTP-binding and WD motifs have also been identified. The existence of yeast ESTs for two of the newly identified ORFs indicates that they are transcribed.

Published
1997
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11. Sequence analysis of a 40.7 kb segment from the left arm of yeast chromosome X reveals 14 known genes and 13 new open reading frames including homologues of genes clustered on the right arm of chromosome XI.

Author

Katsoulou C, Tzermia M, Tavernarakis N, and Alexandraki D

Subjects
Amino Acid Sequence, Animals, Conserved Sequence, Humans, Molecular Sequence Data, Multigene Family, Open Reading Frames, Restriction Mapping, Sequence Homology, Amino Acid, Chromosomes, Fungal genetics, Genes, Fungal, Saccharomyces cerevisiae genetics
Abstract

The complete nucleotide sequence of a 40.7 kb segment about 130 kb from the left end of chromosome X of Saccharomyces cerevisiae was determined from two overlapping cosmids. Computer analysis of that sequence revealed the presence of the previously known genes VPS35, INO1, SnR128, SnR190, MP12, YAK1, RPB4, YUR1, TIF2, MRS3 and URA2, three previously sequenced open reading frames (ORFs) of unknown function 5' of the INO1, 5' of the MP12 and 3' of the URA2 genes and 13 newly identified ORFs. One of the new ORFs is homologous to mammalian glycogenin glycosyltransferases and another has similarities to the human phospholipase D. Some others contain potential transmembrane regions or leucine zipper motifs. The existence of yeast expressed sequence tags for some of the newly identified ORFs indicates that they are transcribed. A cluster of six genes within 10 kb (YUR1, TIF2, two new ORFs, an RSP25 homologue and MRS3) have homologues arranged similarly within 28.5 kb on the right arm of chromosome XI.

Published
1996
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12. The complete sequencing of a 24.6 kb segment of yeast chromosome XI identified the known loci URA1, SAC1 and TRP3, and revealed 6 new open reading frames including homologues to the threonine dehydratases, membrane transporters, hydantoinases and the phospholipase A2-activating protein.

Author

Tzermia M, Horaitis O, and Alexandraki D

Subjects
Amino Acid Sequence, Base Sequence, Chromosome Mapping, Genome, Fungal, Molecular Sequence Data, Sequence Analysis, DNA, Sequence Homology, Amidohydrolases genetics, Chromosomes, Fungal chemistry, Proteins genetics, Saccharomyces cerevisiae genetics, Threonine Dehydratase genetics
Abstract

We report the entire sequence of a 26.4 kb segment of chromosome XI of Saccharomyces cerevisiae. Identification of the known loci URA1, TRP3 and SAC1 revealed a translocation compared to the genetic map. Additionally, six unknown open reading frames have been identified. One of them is similar to catabolic threonine dehydratases. Another one contains characteristic features of membrane transporters. A third one is homologous in half of its length to the prokaryotic hydantoinase HyuA and in the other half to hydatoinase HyuB. A fourth one is homologous to the mammalian phospholipase A2-activating protein. A fifth one, finally, is homologous to the hypothetical open reading frame YCR007C of chromosome III. The sequence has been deposited in the EMBL data library under Accession Number X75951.

Published
1994
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13. Sequencing of a 13.2 kb segment next to the left telomere of yeast chromosome XI revealed five open reading frames and recent recombination events with the right arms of chromosomes III and V.

Author

Alexandraki D and Tzermia M

Subjects
Amino Acid Sequence, Base Sequence, Molecular Sequence Data, Restriction Mapping, Sequence Alignment, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Sequence Homology, Nucleic Acid, Telomere, Chromosomes, Fungal, Genes, Fungal, Open Reading Frames genetics, Recombination, Genetic genetics, Saccharomyces cerevisiae genetics
Abstract

We report the entire sequence of a 13.2 kb segment next to the left telomere of chromosome XI of Saccharomyces cerevisiae. A 1.2 kb fragment near one end is 91% homologous to the right arm of chromosome III and 0.7 kb of that are 77% homologous to the right arm of chromosome V. Five open reading frames are included in the sequenced segment. Two of them are almost identical to the known YCR104W and YCR103C hypothetical proteins of chromosome III. A third one contains a region homologous to the Zn (2)-Cys (6) binuclear cluster pattern of fungal transcriptional activators. The fourth one, part of which is similar to the mammalian putative transporter of mevalonate, has the structure of membrane transporters. The fifth one is similar to yeast ferric reductase.

Published
1994
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