22 results on '"Tukhbatova R"'
Search Results
2. Palaeogenomics of Upper Palaeolithic to Neolithic European hunter-gatherers
- Author
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Posth, C., Yu, H., Ghalichi, A., Rougier, H., Crevecoeur, I., Huang, Y., Ringbauer, H., Rohrlach, A., Nägele, K., Villalba-Mouco, V., Radzeviciute, R., Ferraz, T., Stoessel, A., Tukhbatova, R., Drucker, D., Lari, M., Modi, A., Vai, S., Saupe, T., Scheib, C., Catalano, G., Pagani, L., Talamo, S., Fewlass, H., Klaric, L., Morala, A., Rué, M., Madelaine, S., Crépin, L., Caverne, J., Bocaege, E., Ricci, S., Boschin, F., Bayle, P., Maureille, B., Le Brun-Ricalens, F., Bordes, J., Oxilia, G., Bortolini, E., Bignon-Lau, O., Debout, G., Orliac, M., Zazzo, A., Sparacello, V., Starnini, E., Sineo, L., van der Plicht, J., Pecqueur, L., Merceron, G., Garcia, G., Leuvrey, J., Garcia, C., Gómez-Olivencia, A., Połtowicz-Bobak, M., Bobak, D., Le Luyer, M., Storm, P., Hoffmann, C., Kabaciński, J., Filimonova, T., Shnaider, S., Berezina, N., González-Rabanal, B., Morales, G., R., M., Marín-Arroyo, A., López, B., Alonso-Llamazares, C., Ronchitelli, A., Polet, C., Jadin, I., Cauwe, N., Soler, J., Coromina, N., Rufí, I., Cottiaux, R., Clark, G., Straus, L., Julien, M., Renhart, S., Talaa, D., Benazzi, S., Romandini, M., Amkreutz, L., Bocherens, H., Wißing, C., Villotte, S., de Pablo, Fernández-López, J., Gómez-Puche, M., Esquembre-Bebia, M., Bodu, P., Smits, L., Souffi, B., Jankauskas, R., Kozakaitė, J., Cupillard, C., Benthien, H., Wehrberger, K., Schmitz, R., Feine, S., Schüler, T., Thevenet, C., Grigorescu, D., Lüth, F., Kotula, A., Piezonka, H., Schopper, F., Svoboda, J., Sázelová, S., Chizhevsky, A., Khokhlov, A., Conard, N., Valentin, F., Harvati, K., Semal, P., Jungklaus, B., Suvorov, A., Schulting, R., Moiseyev, V., Mannermaa, K., Buzhilova, A., Terberger, T., Caramelli, D., Altena, E., Haak, W., and Krause, J.
- Abstract
Modern humans have populated Europe for more than 45,000 years1,2. Our knowledge of the genetic relatedness and structure of ancient hunter-gatherers is however limited, owing to the scarceness and poor molecular preservation of human remains from that period3. Here we analyse 356 ancient hunter-gatherer genomes, including new genomic data for 116 individuals from 14 countries in western and central Eurasia, spanning between 35,000 and 5,000 years ago. We identify a genetic ancestry profile in individuals associated with Upper Palaeolithic Gravettian assemblages from western Europe that is distinct from contemporaneous groups related to this archaeological culture in central and southern Europe4, but resembles that of preceding individuals associated with the Aurignacian culture. This ancestry profile survived during the Last Glacial Maximum (25,000 to 19,000 years ago) in human populations from southwestern Europe associated with the Solutrean culture, and with the following Magdalenian culture that re-expanded northeastward after the Last Glacial Maximum. Conversely, we reveal a genetic turnover in southern Europe suggesting a local replacement of human groups around the time of the Last Glacial Maximum, accompanied by a north-to-south dispersal of populations associated with the Epigravettian culture. From at least 14,000 years ago, an ancestry related to this culture spread from the south across the rest of Europe, largely replacing the Magdalenian-associated gene pool. After a period of limited admixture that spanned the beginning of the Mesolithic, we find genetic interactions between western and eastern European hunter-gatherers, who were also characterized by marked differences in phenotypically relevant variants. Ancient DNA data generation Before the LGM LGM in southwestern and western Europe Post-LGM in the Italian peninsula Post-LGM in western and central Europe Post-14 ka to Neolithic Phenotypically relevant variants Discussion and conclusions Methods
- Published
- 2023
3. Ten millennia of hepatitis B virus evolution
- Author
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Kocher, A, Papac, L, Barquera, R, Key, FM, Spyrou, MA, Hubler, R, Rohrlach, AB, Aron, F, Stahl, R, Wissgott, A, van Bommel, F, Pfefferkorn, M, Mittnik, A, Villalba-Mouco, V, Neumann, GU, Rivollat, M, van de Loosdrecht, MS, Majander, K, Tukhbatova, R, Musralina, L, Ghalichi, A, Penske, S, Sabin, S, Michel, M, Gretzinger, J, Nelson, EA, Ferraz, T, Nagele, K, Parker, C, Keller, M, Guevara, EK, Feldman, M, Eisenmann, S, Skourtanioti, E, Giffin, K, Gnecchi-Ruscone, GA, Friederich, S, Schimmenti, V, Khartanovich, V, Karapetian, MK, Chaplygin, MS, Kufterin, VV, Khokhlov, AA, Chizhevsky, AA, Stashenkov, DA, Kochkina, AF, Tejedor-Rodriguez, C, Garcia-Martinez de Lagran, I, Arcusa-Magallon, H, Garrido-Pena, R, Ignacio Royo-Guillen, J, Novacek, J, Rottier, S, Kacki, S, Saintot, S, Kaverzneva, E, Belinskiy, AB, Veleminsky, P, Limbursky, P, Kostka, M, Loe, L, Popescu, E, Clarke, R, Lyons, A, Mortimer, R, Sajantila, A, Chinique de Armas, Y, Hernandez Godoy, ST, Hernandez-Zaragoza, D, Pearson, J, Binder, D, Lefranc, P, Kantorovich, AR, Maslov, VE, Lai, L, Zoledziewska, M, Beckett, JF, Langova, M, Ingman, T, Garcia Atienzar, G, de Miguel Ibanez, MP, Romero, A, Sperduti, A, Beckett, S, Salter, SJ, Zilivinskaya, ED, Vasil, DV, von Heyking, K, Burger, RL, Salazar, LC, Amkreutz, L, Navruzbekov, M, Rosenstock, E, Alonso-Fernandez, C, Slavchev, V, Kalmykov, AA, Atabiev, BC, Batieva, E, Alvarez Calmet, M, Llamas, B, Schultz, M, Krauss, R, Jimenez-Echevarria, J, Francken, M, Shnaider, S, de Knijff, P, Altena, E, Van de Vijver, K, Fehren-Schmitz, L, Tung, TA, Losch, S, Dobrovolskaya, M, Makarov, N, Read, C, Van Twest, M, Sagona, C, Ramsl, PC, Akar, M, Yener, KA, Carmona Ballestero, E, Cucca, F, Mazzarello, V, Utrilla, P, Rademaker, K, Fernandez-Dominguez, E, Baird, D, Semal, P, Marquez-Morfin, L, Roksandic, M, Steiner, H, Carlos Salazar-Garcia, D, Shishlina, N, Erdal, YS, Hallgren, F, Boyadzhiev, Y, Boyadzhiev, K, Kuessner, M, Sayer, D, Onkamo, P, Skeates, R, Rojo-Guerra, M, Buzhilova, A, Khussainova, E, Djansugurova, LB, Beisenov, AZ, Samashev, Z, Massy, K, Mannino, M, Moiseyev, V, Mannermaa, K, Balanovsky, O, Deguilloux, M-F, Reinhold, S, Hansen, S, Kitov, EP, Dobes, M, Ernee, M, Meller, H, Alt, KW, Prufer, K, Warinner, C, Schiffels, S, Stockhammer, PW, Bos, K, Posth, C, Herbig, A, Haak, W, Krause, J, Kuehnert, D, Kocher, A, Papac, L, Barquera, R, Key, FM, Spyrou, MA, Hubler, R, Rohrlach, AB, Aron, F, Stahl, R, Wissgott, A, van Bommel, F, Pfefferkorn, M, Mittnik, A, Villalba-Mouco, V, Neumann, GU, Rivollat, M, van de Loosdrecht, MS, Majander, K, Tukhbatova, R, Musralina, L, Ghalichi, A, Penske, S, Sabin, S, Michel, M, Gretzinger, J, Nelson, EA, Ferraz, T, Nagele, K, Parker, C, Keller, M, Guevara, EK, Feldman, M, Eisenmann, S, Skourtanioti, E, Giffin, K, Gnecchi-Ruscone, GA, Friederich, S, Schimmenti, V, Khartanovich, V, Karapetian, MK, Chaplygin, MS, Kufterin, VV, Khokhlov, AA, Chizhevsky, AA, Stashenkov, DA, Kochkina, AF, Tejedor-Rodriguez, C, Garcia-Martinez de Lagran, I, Arcusa-Magallon, H, Garrido-Pena, R, Ignacio Royo-Guillen, J, Novacek, J, Rottier, S, Kacki, S, Saintot, S, Kaverzneva, E, Belinskiy, AB, Veleminsky, P, Limbursky, P, Kostka, M, Loe, L, Popescu, E, Clarke, R, Lyons, A, Mortimer, R, Sajantila, A, Chinique de Armas, Y, Hernandez Godoy, ST, Hernandez-Zaragoza, D, Pearson, J, Binder, D, Lefranc, P, Kantorovich, AR, Maslov, VE, Lai, L, Zoledziewska, M, Beckett, JF, Langova, M, Ingman, T, Garcia Atienzar, G, de Miguel Ibanez, MP, Romero, A, Sperduti, A, Beckett, S, Salter, SJ, Zilivinskaya, ED, Vasil, DV, von Heyking, K, Burger, RL, Salazar, LC, Amkreutz, L, Navruzbekov, M, Rosenstock, E, Alonso-Fernandez, C, Slavchev, V, Kalmykov, AA, Atabiev, BC, Batieva, E, Alvarez Calmet, M, Llamas, B, Schultz, M, Krauss, R, Jimenez-Echevarria, J, Francken, M, Shnaider, S, de Knijff, P, Altena, E, Van de Vijver, K, Fehren-Schmitz, L, Tung, TA, Losch, S, Dobrovolskaya, M, Makarov, N, Read, C, Van Twest, M, Sagona, C, Ramsl, PC, Akar, M, Yener, KA, Carmona Ballestero, E, Cucca, F, Mazzarello, V, Utrilla, P, Rademaker, K, Fernandez-Dominguez, E, Baird, D, Semal, P, Marquez-Morfin, L, Roksandic, M, Steiner, H, Carlos Salazar-Garcia, D, Shishlina, N, Erdal, YS, Hallgren, F, Boyadzhiev, Y, Boyadzhiev, K, Kuessner, M, Sayer, D, Onkamo, P, Skeates, R, Rojo-Guerra, M, Buzhilova, A, Khussainova, E, Djansugurova, LB, Beisenov, AZ, Samashev, Z, Massy, K, Mannino, M, Moiseyev, V, Mannermaa, K, Balanovsky, O, Deguilloux, M-F, Reinhold, S, Hansen, S, Kitov, EP, Dobes, M, Ernee, M, Meller, H, Alt, KW, Prufer, K, Warinner, C, Schiffels, S, Stockhammer, PW, Bos, K, Posth, C, Herbig, A, Haak, W, Krause, J, and Kuehnert, D
- Abstract
Hepatitis B virus (HBV) has been infecting humans for millennia and remains a global health problem, but its past diversity and dispersal routes are largely unknown. We generated HBV genomic data from 137 Eurasians and Native Americans dated between ~10,500 and ~400 years ago. We date the most recent common ancestor of all HBV lineages to between ~20,000 and 12,000 years ago, with the virus present in European and South American hunter-gatherers during the early Holocene. After the European Neolithic transition, Mesolithic HBV strains were replaced by a lineage likely disseminated by early farmers that prevailed throughout western Eurasia for ~4000 years, declining around the end of the 2nd millennium BCE. The only remnant of this prehistoric HBV diversity is the rare genotype G, which appears to have reemerged during the HIV pandemic.
- Published
- 2021
4. Metabolic profiling for characteristics of trichoderma from buried soils
- Author
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Tukhbatova R., Morozova Y., and Alimova F.
- Subjects
Trichoderma ,Biolog ,food and beverages ,Metabolic profile - Abstract
Previously, 135 strains of Trichoderma isolated from buried soils of Tatarstan have been identified as T. asperellum, T. viride, T. atroviride, T. harzianum, T. hamatum, T. citrinoviride and T longibrachiatum. At this stage, the biochemical analysis of the strains was carried out using the Biolog system, which being a simple screening test enables rapid preparation of strains based on 95 substrates. We have revealed that each species has only a specific substrate utilisation profile. Biochemical analysis provides a large amount of information that can then be used for optimization of biotechnological processes, in particular, the selection of effective nutrient media.
- Published
- 2014
5. Anticancer properties of trichoderma asperellum 302 from buried soils
- Author
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Tukhbatova R., Fattakhova A., and Alimova F.
- Subjects
Trichoderma ,Anticancer effect ,Melanoma - Abstract
Melanoma is one of the most malignant tumors, which leaves no chance of survival in the case of the «bang». There are various ways to treat tumors, however, recently in the field of cancer research, there are studies in which fungal metabolites have been used as antitumor agents. In this study we examined the effect of the culture fluid of the fungus Trichoderma asperellum 302 on the growth and development of melanoma B16. We have shown that these culture fluid has anticancer properties, causing destruction of tumor tissue. Obtained data open new possibilities and prospects for the use of active substances derived from fungi in the complex therapy of cancer.
- Published
- 2014
6. Influence of Trichoderma asperellum metabolites on tissue regeneration against pyrene
- Author
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Tukhbatova R., Abd El-Rahman A., Mukhametzyanova A., Nguen T., Hoang T., Fattahova A., and Alimova F.
- Subjects
Trichoderma ,Pyrene ,Tissue regeneration ,food and beverages - Abstract
We studied the influence of the culture fluid of fungi of the genus Trichoderma on Swiss Webster CFW mice after exposure to pyrene - polycyclic aromatic hydrocarbons, which can cause pathological changes in the body. Beneficial effect of Trichoderma metabolites on haematological parameters, the functioning of liver and nephros was shown, the trend toward regeneration of the structure of skin and liver after the damages, caused by the introduction of pyrene, was identified.
- Published
- 2012
7. Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes
- Author
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Spyrou M., Keller M., Tukhbatova R., Scheib C., Nelson E., Andrades Valtueña A., Neumann G., Walker D., Alterauge A., Carty N., Cessford C., Fetz H., Gourvennec M., Hartle R., Henderson M., von Heyking K., Inskip S., Kacki S., Key F., Knox E., Later C., Maheshwari-Aplin P., Peters J., Robb J., Schreiber J., Kivisild T., Castex D., Lösch S., Harbeck M., Herbig A., Bos K., Krause J., Spyrou M., Keller M., Tukhbatova R., Scheib C., Nelson E., Andrades Valtueña A., Neumann G., Walker D., Alterauge A., Carty N., Cessford C., Fetz H., Gourvennec M., Hartle R., Henderson M., von Heyking K., Inskip S., Kacki S., Key F., Knox E., Later C., Maheshwari-Aplin P., Peters J., Robb J., Schreiber J., Kivisild T., Castex D., Lösch S., Harbeck M., Herbig A., Bos K., and Krause J.
- Abstract
© 2019, The Author(s). The second plague pandemic, caused by Yersinia pestis, devastated Europe and the nearby regions between the 14th and 18th centuries AD. Here we analyse human remains from ten European archaeological sites spanning this period and reconstruct 34 ancient Y. pestis genomes. Our data support an initial entry of the bacterium through eastern Europe, the absence of genetic diversity during the Black Death, and low within-outbreak diversity thereafter. Analysis of post-Black Death genomes shows the diversification of a Y. pestis lineage into multiple genetically distinct clades that may have given rise to more than one disease reservoir in, or close to, Europe. In addition, we show the loss of a genomic region that includes virulence-related genes in strains associated with late stages of the pandemic. The deletion was also identified in genomes connected with the first plague pandemic (541–750 AD), suggesting a comparable evolutionary trajectory of Y. pestis during both events.
8. Isolation, characterization and antibiotic activities of new variants of actinomycetes
- Author
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Saparmyradov K., Validov S., Tukhbatova R., Alimova F., Filimonova M., Saparmyradov K., Validov S., Tukhbatova R., Alimova F., and Filimonova M.
- Abstract
Copyright © 2019 American Scientific Publishers. All rights reserved. In order to find new antibiotics the investigation was undertaken and resulted in isolation of 18 actinomycetes from different samples of soils of Mongolia, and different types of Russia soil and the waste water. Out of 18 isolates 9 showed inhibitory activity against at least one of four bacteria i.e., Bacillus megaterium, Salmonella typhimurium, Listeria monocytogenes, or Pseudomonas putida, and 6 of the 18—against at least one of five fungi, i.e., Trichoderma asperellum, Aspergillus Niger, Penicillus sp., Fusarium oxysporum, or Saccharomyces cerevisiae. The isolates, inhibiting the growth of bacteria and fungi, were identified on the bases of morphological and biochemical properties as well as 16S rDNA sequence analysis. Further works are needed on optimization of these isolates’ antagonistic activities and characterization of the antimicrobial metabolites.
9. Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague
- Author
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Spyrou M., Tukhbatova R., Wang C., Valtueña A., Lankapalli A., Kondrashin V., Tsybin V., Khokhlov A., Kühnert D., Herbig A., Bos K., Krause J., Spyrou M., Tukhbatova R., Wang C., Valtueña A., Lankapalli A., Kondrashin V., Tsybin V., Khokhlov A., Kühnert D., Herbig A., Bos K., and Krause J.
- Abstract
© 2018 The Author(s). The origin of Yersinia pestis and the early stages of its evolution are fundamental subjects of investigation given its high virulence and mortality that resulted from past pandemics. Although the earliest evidence of Y. pestis infections in humans has been identified in Late Neolithic/Bronze Age Eurasia (LNBA 5000-3500y BP), these strains lack key genetic components required for flea adaptation, thus making their mode of transmission and disease presentation in humans unclear. Here, we reconstruct ancient Y. pestis genomes from individuals associated with the Late Bronze Age period (~3800 BP) in the Samara region of modern-day Russia. We show clear distinctions between our new strains and the LNBA lineage, and suggest that the full ability for flea-mediated transmission causing bubonic plague evolved more than 1000 years earlier than previously suggested. Finally, we propose that several Y. pestis lineages were established during the Bronze Age, some of which persist to the present day.
10. Historical Y. pestis Genomes Reveal the European Black Death as the Source of Ancient and Modern Plague Pandemics
- Author
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Spyrou M., Tukhbatova R., Feldman M., Drath J., Kacki S., Beltrán De Heredia J., Arnold S., Sitdikov A., Castex D., Wahl J., Gazimzyanov I., Nurgaliev D., Herbig A., Bos K., Krause J., Spyrou M., Tukhbatova R., Feldman M., Drath J., Kacki S., Beltrán De Heredia J., Arnold S., Sitdikov A., Castex D., Wahl J., Gazimzyanov I., Nurgaliev D., Herbig A., Bos K., and Krause J.
- Abstract
© 2016 Elsevier Inc.Ancient DNA analysis has revealed an involvement of the bacterial pathogen Yersinia pestis in several historical pandemics, including the second plague pandemic (Europe, mid-14th century Black Death until the mid-18th century AD). Here we present reconstructed Y. pestis genomes from plague victims of the Black Death and two subsequent historical outbreaks spanning Europe and its vicinity, namely Barcelona, Spain (1300-1420 cal AD), Bolgar City, Russia (1362-1400 AD), and Ellwangen, Germany (1485-1627 cal AD). Our results provide support for (1) a single entry of Y. pestis in Europe during the Black Death, (2) a wave of plague that traveled toward Asia to later become the source population for contemporary worldwide epidemics, and (3) the presence of an historical European plague focus involved in post-Black Death outbreaks that is now likely extinct.
11. Influence of Trichoderma asperellum metabolites on tissue regeneration against pyrene
- Author
-
Tukhbatova R., Abd El-Rahman A., Mukhametzyanova A., Nguen T., Hoang T., Fattahova A., Alimova F., Tukhbatova R., Abd El-Rahman A., Mukhametzyanova A., Nguen T., Hoang T., Fattahova A., and Alimova F.
- Abstract
We studied the influence of the culture fluid of fungi of the genus Trichoderma on Swiss Webster CFW mice after exposure to pyrene - polycyclic aromatic hydrocarbons, which can cause pathological changes in the body. Beneficial effect of Trichoderma metabolites on haematological parameters, the functioning of liver and nephros was shown, the trend toward regeneration of the structure of skin and liver after the damages, caused by the introduction of pyrene, was identified.
12. Metabolic profiling for characteristics of trichoderma from buried soils
- Author
-
Tukhbatova R., Morozova Y., Alimova F., Tukhbatova R., Morozova Y., and Alimova F.
- Abstract
Previously, 135 strains of Trichoderma isolated from buried soils of Tatarstan have been identified as T. asperellum, T. viride, T. atroviride, T. harzianum, T. hamatum, T. citrinoviride and T longibrachiatum. At this stage, the biochemical analysis of the strains was carried out using the Biolog system, which being a simple screening test enables rapid preparation of strains based on 95 substrates. We have revealed that each species has only a specific substrate utilisation profile. Biochemical analysis provides a large amount of information that can then be used for optimization of biotechnological processes, in particular, the selection of effective nutrient media.
13. Anticancer properties of trichoderma asperellum 302 from buried soils
- Author
-
Tukhbatova R., Fattakhova A., Alimova F., Tukhbatova R., Fattakhova A., and Alimova F.
- Abstract
Melanoma is one of the most malignant tumors, which leaves no chance of survival in the case of the «bang». There are various ways to treat tumors, however, recently in the field of cancer research, there are studies in which fungal metabolites have been used as antitumor agents. In this study we examined the effect of the culture fluid of the fungus Trichoderma asperellum 302 on the growth and development of melanoma B16. We have shown that these culture fluid has anticancer properties, causing destruction of tumor tissue. Obtained data open new possibilities and prospects for the use of active substances derived from fungi in the complex therapy of cancer.
14. Historical Y. pestis Genomes Reveal the European Black Death as the Source of Ancient and Modern Plague Pandemics
- Author
-
Spyrou M., Tukhbatova R., Feldman M., Drath J., Kacki S., Beltrán De Heredia J., Arnold S., Sitdikov A., Castex D., Wahl J., Gazimzyanov I., Nurgaliev D., Herbig A., Bos K., Krause J., Spyrou M., Tukhbatova R., Feldman M., Drath J., Kacki S., Beltrán De Heredia J., Arnold S., Sitdikov A., Castex D., Wahl J., Gazimzyanov I., Nurgaliev D., Herbig A., Bos K., and Krause J.
- Abstract
© 2016 Elsevier Inc.Ancient DNA analysis has revealed an involvement of the bacterial pathogen Yersinia pestis in several historical pandemics, including the second plague pandemic (Europe, mid-14th century Black Death until the mid-18th century AD). Here we present reconstructed Y. pestis genomes from plague victims of the Black Death and two subsequent historical outbreaks spanning Europe and its vicinity, namely Barcelona, Spain (1300-1420 cal AD), Bolgar City, Russia (1362-1400 AD), and Ellwangen, Germany (1485-1627 cal AD). Our results provide support for (1) a single entry of Y. pestis in Europe during the Black Death, (2) a wave of plague that traveled toward Asia to later become the source population for contemporary worldwide epidemics, and (3) the presence of an historical European plague focus involved in post-Black Death outbreaks that is now likely extinct.
15. Influence of Trichoderma asperellum metabolites on tissue regeneration against pyrene
- Author
-
Tukhbatova R., Abd El-Rahman A., Mukhametzyanova A., Nguen T., Hoang T., Fattahova A., Alimova F., Tukhbatova R., Abd El-Rahman A., Mukhametzyanova A., Nguen T., Hoang T., Fattahova A., and Alimova F.
- Abstract
We studied the influence of the culture fluid of fungi of the genus Trichoderma on Swiss Webster CFW mice after exposure to pyrene - polycyclic aromatic hydrocarbons, which can cause pathological changes in the body. Beneficial effect of Trichoderma metabolites on haematological parameters, the functioning of liver and nephros was shown, the trend toward regeneration of the structure of skin and liver after the damages, caused by the introduction of pyrene, was identified.
16. Metabolic profiling for characteristics of trichoderma from buried soils
- Author
-
Tukhbatova R., Morozova Y., Alimova F., Tukhbatova R., Morozova Y., and Alimova F.
- Abstract
Previously, 135 strains of Trichoderma isolated from buried soils of Tatarstan have been identified as T. asperellum, T. viride, T. atroviride, T. harzianum, T. hamatum, T. citrinoviride and T longibrachiatum. At this stage, the biochemical analysis of the strains was carried out using the Biolog system, which being a simple screening test enables rapid preparation of strains based on 95 substrates. We have revealed that each species has only a specific substrate utilisation profile. Biochemical analysis provides a large amount of information that can then be used for optimization of biotechnological processes, in particular, the selection of effective nutrient media.
17. Anticancer properties of trichoderma asperellum 302 from buried soils
- Author
-
Tukhbatova R., Fattakhova A., Alimova F., Tukhbatova R., Fattakhova A., and Alimova F.
- Abstract
Melanoma is one of the most malignant tumors, which leaves no chance of survival in the case of the «bang». There are various ways to treat tumors, however, recently in the field of cancer research, there are studies in which fungal metabolites have been used as antitumor agents. In this study we examined the effect of the culture fluid of the fungus Trichoderma asperellum 302 on the growth and development of melanoma B16. We have shown that these culture fluid has anticancer properties, causing destruction of tumor tissue. Obtained data open new possibilities and prospects for the use of active substances derived from fungi in the complex therapy of cancer.
18. Author Correction: Palaeogenomics of Upper Palaeolithic to Neolithic European hunter-gatherers.
- Author
-
Posth C, Yu H, Ghalichi A, Rougier H, Crevecoeur I, Huang Y, Ringbauer H, Rohrlach AB, Nägele K, Villalba-Mouco V, Radzeviciute R, Ferraz T, Stoessel A, Tukhbatova R, Drucker DG, Lari M, Modi A, Vai S, Saupe T, Scheib CL, Catalano G, Pagani L, Talamo S, Fewlass H, Klaric L, Morala A, Rué M, Madelaine S, Crépin L, Caverne JB, Bocaege E, Ricci S, Boschin F, Bayle P, Maureille B, Le Brun-Ricalens F, Bordes JG, Oxilia G, Bortolini E, Bignon-Lau O, Debout G, Orliac M, Zazzo A, Sparacello V, Starnini E, Sineo L, van der Plicht J, Pecqueur L, Merceron G, Garcia G, Leuvrey JM, Garcia CB, Gómez-Olivencia A, Połtowicz-Bobak M, Bobak D, Le Luyer M, Storm P, Hoffmann C, Kabaciński J, Filimonova T, Shnaider S, Berezina N, González-Rabanal B, González Morales MR, Marín-Arroyo AB, López B, Alonso-Llamazares C, Ronchitelli A, Polet C, Jadin I, Cauwe N, Soler J, Coromina N, Rufí I, Cottiaux R, Clark G, Straus LG, Julien MA, Renhart S, Talaa D, Benazzi S, Romandini M, Amkreutz L, Bocherens H, Wißing C, Villotte S, de Pablo JF, Gómez-Puche M, Esquembre-Bebia MA, Bodu P, Smits L, Souffi B, Jankauskas R, Kozakaitė J, Cupillard C, Benthien H, Wehrberger K, Schmitz RW, Feine SC, Schüler T, Thevenet C, Grigorescu D, Lüth F, Kotula A, Piezonka H, Schopper F, Svoboda J, Sázelová S, Chizhevsky A, Khokhlov A, Conard NJ, Valentin F, Harvati K, Semal P, Jungklaus B, Suvorov A, Schulting R, Moiseyev V, Mannermaa K, Buzhilova A, Terberger T, Caramelli D, Altena E, Haak W, and Krause J
- Published
- 2023
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19. Palaeogenomics of Upper Palaeolithic to Neolithic European hunter-gatherers.
- Author
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Posth C, Yu H, Ghalichi A, Rougier H, Crevecoeur I, Huang Y, Ringbauer H, Rohrlach AB, Nägele K, Villalba-Mouco V, Radzeviciute R, Ferraz T, Stoessel A, Tukhbatova R, Drucker DG, Lari M, Modi A, Vai S, Saupe T, Scheib CL, Catalano G, Pagani L, Talamo S, Fewlass H, Klaric L, Morala A, Rué M, Madelaine S, Crépin L, Caverne JB, Bocaege E, Ricci S, Boschin F, Bayle P, Maureille B, Le Brun-Ricalens F, Bordes JG, Oxilia G, Bortolini E, Bignon-Lau O, Debout G, Orliac M, Zazzo A, Sparacello V, Starnini E, Sineo L, van der Plicht J, Pecqueur L, Merceron G, Garcia G, Leuvrey JM, Garcia CB, Gómez-Olivencia A, Połtowicz-Bobak M, Bobak D, Le Luyer M, Storm P, Hoffmann C, Kabaciński J, Filimonova T, Shnaider S, Berezina N, González-Rabanal B, González Morales MR, Marín-Arroyo AB, López B, Alonso-Llamazares C, Ronchitelli A, Polet C, Jadin I, Cauwe N, Soler J, Coromina N, Rufí I, Cottiaux R, Clark G, Straus LG, Julien MA, Renhart S, Talaa D, Benazzi S, Romandini M, Amkreutz L, Bocherens H, Wißing C, Villotte S, de Pablo JF, Gómez-Puche M, Esquembre-Bebia MA, Bodu P, Smits L, Souffi B, Jankauskas R, Kozakaitė J, Cupillard C, Benthien H, Wehrberger K, Schmitz RW, Feine SC, Schüler T, Thevenet C, Grigorescu D, Lüth F, Kotula A, Piezonka H, Schopper F, Svoboda J, Sázelová S, Chizhevsky A, Khokhlov A, Conard NJ, Valentin F, Harvati K, Semal P, Jungklaus B, Suvorov A, Schulting R, Moiseyev V, Mannermaa K, Buzhilova A, Terberger T, Caramelli D, Altena E, Haak W, and Krause J
- Subjects
- Humans, Europe ethnology, Gene Pool, History, Ancient, Archaeology, Genomics, Hunting, Paleontology, Human Genetics, Genome, Human genetics
- Abstract
Modern humans have populated Europe for more than 45,000 years
1,2 . Our knowledge of the genetic relatedness and structure of ancient hunter-gatherers is however limited, owing to the scarceness and poor molecular preservation of human remains from that period3 . Here we analyse 356 ancient hunter-gatherer genomes, including new genomic data for 116 individuals from 14 countries in western and central Eurasia, spanning between 35,000 and 5,000 years ago. We identify a genetic ancestry profile in individuals associated with Upper Palaeolithic Gravettian assemblages from western Europe that is distinct from contemporaneous groups related to this archaeological culture in central and southern Europe4 , but resembles that of preceding individuals associated with the Aurignacian culture. This ancestry profile survived during the Last Glacial Maximum (25,000 to 19,000 years ago) in human populations from southwestern Europe associated with the Solutrean culture, and with the following Magdalenian culture that re-expanded northeastward after the Last Glacial Maximum. Conversely, we reveal a genetic turnover in southern Europe suggesting a local replacement of human groups around the time of the Last Glacial Maximum, accompanied by a north-to-south dispersal of populations associated with the Epigravettian culture. From at least 14,000 years ago, an ancestry related to this culture spread from the south across the rest of Europe, largely replacing the Magdalenian-associated gene pool. After a period of limited admixture that spanned the beginning of the Mesolithic, we find genetic interactions between western and eastern European hunter-gatherers, who were also characterized by marked differences in phenotypically relevant variants., (© 2023. The Author(s).)- Published
- 2023
- Full Text
- View/download PDF
20. Emergence of human-adapted Salmonella enterica is linked to the Neolithization process.
- Author
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Key FM, Posth C, Esquivel-Gomez LR, Hübler R, Spyrou MA, Neumann GU, Furtwängler A, Sabin S, Burri M, Wissgott A, Lankapalli AK, Vågene ÅJ, Meyer M, Nagel S, Tukhbatova R, Khokhlov A, Chizhevsky A, Hansen S, Belinsky AB, Kalmykov A, Kantorovich AR, Maslov VE, Stockhammer PW, Vai S, Zavattaro M, Riga A, Caramelli D, Skeates R, Beckett J, Gradoli MG, Steuri N, Hafner A, Ramstein M, Siebke I, Lösch S, Erdal YS, Alikhan NF, Zhou Z, Achtman M, Bos K, Reinhold S, Haak W, Kühnert D, Herbig A, and Krause J
- Subjects
- Animals, Genome, Bacterial, Humans, Salmonella enterica
- Abstract
It has been hypothesized that the Neolithic transition towards an agricultural and pastoralist economy facilitated the emergence of human-adapted pathogens. Here, we recovered eight Salmonella enterica subsp. enterica genomes from human skeletons of transitional foragers, pastoralists and agropastoralists in western Eurasia that were up to 6,500 yr old. Despite the high genetic diversity of S. enterica, all ancient bacterial genomes clustered in a single previously uncharacterized branch that contains S. enterica adapted to multiple mammalian species. All ancient bacterial genomes from prehistoric (agro-)pastoralists fall within a part of this branch that also includes the human-specific S. enterica Paratyphi C, illustrating the evolution of a human pathogen over a period of 5,000 yr. Bacterial genomic comparisons suggest that the earlier ancient strains were not host specific, differed in pathogenic potential and experienced convergent pseudogenization that accompanied their downstream host adaptation. These observations support the concept that the emergence of human-adapted S. enterica is linked to human cultural transformations.
- Published
- 2020
- Full Text
- View/download PDF
21. [Anticancer properties of Trichoderma asperellum 302 from buried soils].
- Author
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Tukhbatova RI, Fattakhova AN, and Alimova FK
- Subjects
- Animals, Body Weight drug effects, Doxorubicin pharmacology, Female, Hyalin drug effects, Melanoma, Experimental pathology, Mice, Mice, Inbred C57BL, Skin Neoplasms pathology, Trichoderma isolation & purification, Trichoderma metabolism, Antineoplastic Agents pharmacology, Culture Media, Conditioned pharmacology, Melanoma, Experimental drug therapy, Skin Neoplasms drug therapy, Soil Microbiology, Trichoderma chemistry
- Abstract
Melanoma is one of the most malignant tumors, which leaves no chance of survival in the case of the "bang". There are various ways to treat tumors, however, recently in the field of cancer research, there are studies in which fungal metabolites have been used as antitumor agents. In this study we examined the effect of the culture fluid of the fungus Trichoderma asperellum 302 on the growth and development of melanoma B 16. We have shown that these culture fluid has anticancer properties, causing destruction of tumor tissue. Obtained data open new possibilities and prospects for the use of active substances derived from fungi in the complex therapy of cancer.
- Published
- 2014
22. [Metabolic profiling for characteristics of Trichoderma from buried soils].
- Author
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Tukhbatova RI, Morozova IuA, and Alimova FK
- Subjects
- Culture Media chemistry, Culture Media metabolism, Genetic Variation, Tatarstan, Trichoderma classification, Trichoderma genetics, Trichoderma isolation & purification, DNA, Fungal genetics, Metabolome genetics, Phylogeny, Soil Microbiology, Trichoderma metabolism
- Abstract
Previously, 135 strains of Trichoderma isolated from buried soils of Tatarstan have been identified as T. asperellum, T. viride, T. atroviride, T. harzianum, T. hamatum, T. citrinoviride and T. longibrachiatum. At this stage, the biochemical analysis of the strains was carried out using the Biolog system, which being a simple screening test enables rapid preparation of strains based on 95 substrates. We have revealed that each species has only a specific substrate utilisation profile. Biochemical analysis provides a large amount of information that can then be used for optimization of biotechnological processes, in particular, the selection of effective nutrient media.
- Published
- 2014
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