67 results on '"Tsoukas CM"'
Search Results
2. KIR/HLA genotype combinations are determinants of Natural Killer (NK) cell mediated antibody-dependent cellular cytotoxicity (ADCC) potency
- Author
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Parsons MS, Zanoni P, Tallon B, Miconiatis S, Shoukry N, Bruneau J, Tsoukas CM, and Bernard NF
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Immunologic diseases. Allergy ,RC581-607 - Published
- 2012
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3. Predictors of unstructured antiretroviral treatment interruption and resumption among HIV-positive individuals in Canada.
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Samji, H, Taha, TE, Moore, D, Burchell, AN, Cescon, A, Cooper, C, Raboud, JM, Klein, MB, Loutfy, MR, Machouf, N, Tsoukas, CM, Montaner, JSG, Hogg, RS, Aykroyd, G, Balfour, L, Bayoumi, A, Burchell, A, Cairney, J, Calzavara, L, and Gough, K
- Subjects
ANTIRETROVIRAL agents ,ANALYSIS of covariance ,CHI-squared test ,CONFIDENCE intervals ,DRUGS ,HIV infections ,LONGITUDINAL method ,RESEARCH methodology ,SCIENTIFIC observation ,PATIENT compliance ,RESEARCH funding ,STATISTICS ,PROPORTIONAL hazards models ,DATA analysis software ,STATISTICAL models ,DESCRIPTIVE statistics - Abstract
Objectives Sustained optimal use of combination antiretroviral therapy ( cART) has been shown to decrease morbidity, mortality and HIV transmission. However, incomplete adherence and treatment interruption ( TI) remain challenges to the full realization of the promise of cART. We estimated trends and predictors of treatment interruption and resumption among individuals in the Canadian Observational Cohort ( CANOC) collaboration. Methods cART-naïve individuals ≥ 18 years of age who initiated cART between 2000 and 2011 were included in the study. We defined TIs as ≥ 90 consecutive days off cART. We used descriptive analyses to study TI trends over time and Cox regression to identify factors predicting time to first TI and time to treatment resumption after a first TI. Results A total of 7633 participants were eligible for inclusion in the study, of whom 1860 (24.5%) experienced a TI. The prevalence of TI in the first calendar year of cART decreased by half over the study period. Our analyses highlighted a higher risk of TI among women [adjusted hazard ratio ( aHR) 1.59; 95% confidence interval ( CI) 1.33-1.92], younger individuals ( aHR 1.27; 95% CI 1.15-1.37 per decade increase), earlier treatment initiators ( CD4 count ≥ 350 vs. < 200 cells/μL: aHR 1.46; 95% CI 1.17-1.81), Aboriginal participants ( aHR 1.67; 95% CI 1.27-2.20), injecting drug users ( aHR 1.43; 95% CI 1.09-1.89) and users of zidovudine vs. tenofovir in the initial cART regimen ( aHR 2.47; 95% CI 1.92-3.20). Conversely, factors predicting treatment resumption were male sex, older age, and a CD4 cell count < 200 cells/μL at cART initiation. Conclusions Despite significant improvements in cART since its advent, our results demonstrate that TIs remain relatively prevalent. Strategies to support continuous HIV treatment are needed to maximize the benefits of cART. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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4. T cell Activation does not drive CD4 decline in longitudinally followed HIV-infected Elite Controllers.
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Kamya P, Tsoukas CM, Boulet S, Routy JP, Thomas R, Côté P, Boulassel MR, Lessard B, Kaul R, Ostrowski M, Kovacs C, Tremblay CL, and Bernard NF
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HIV infections , *KRUSKAL-Wallis Test , *STATISTICS , *COMPUTER software , *CONFIDENCE intervals , *IMMUNOLOGY technique , *REGRESSION analysis , *MANN Whitney U Test , *RNA , *CD4 lymphocyte count , *DESCRIPTIVE statistics , *VIREMIA , *T cells , *DATA analysis , *PROBABILITY theory - Published
- 2011
5. Adult primary immune deficiency: what are we missing?
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Srinivasa BT, Alizadehfar R, Desrosiers M, Shuster J, Pai NP, and Tsoukas CM
- Published
- 2012
6. Unraveling the Natural History of Good's Syndrome: A Progressive Adult Combined Immunodeficiency.
- Author
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Kabir A, Polito V, and Tsoukas CM
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- Adult, Humans, Child, Middle Aged, Prospective Studies, Cross-Sectional Studies, Longitudinal Studies, Thymus Neoplasms diagnosis, Thymus Neoplasms pathology, Thymoma diagnosis, Thymoma pathology, Immunologic Deficiency Syndromes, Agammaglobulinemia diagnosis, Agammaglobulinemia therapy, Primary Immunodeficiency Diseases diagnosis
- Abstract
Background: Good's syndrome (GS) is a rare immune deficiency described almost 6 decades ago. Despite numerous published individual case reports and data collected in cross-sectional studies of small cohorts, the natural history and long-term outcomes of this disease remain unknown., Objective: We aimed to determine the clinical and laboratory evolution of 8 adults diagnosed with GS and consecutively evaluated between 1983 and 2023., Methods: In this prospective, longitudinal cohort study, newly diagnosed patients with GS were followed through repeated measures of clinical, immune, and hematologic changes, as well as targeted genetic screening., Results: All patients reported a healthy childhood and adolescence with symptom onset during the third or fourth decade of life. All presented to our center with recurrent bacterial sinopulmonary infections, thymoma, hypogammaglobulinemia, and absence of B cells. The median age of GS diagnosis was 57 years. During follow-up, immunoglobin replacement therapy effectively minimized sinopulmonary infections. However, the majority experienced severe and systemic viral or fungal infections, 3 developed basal cell carcinomas, and 5 had progressive bronchiectasis and persistent splenomegaly. The most notable clinical feature was opportunistic infections and in vitro evidence of cellular immune deficiency, which resulted in the death of 2 individuals. We also report a statistically significant, multidecade progressive decline in lymphocytes, platelets, hemoglobin, and red blood cells in our cohort, suggesting gradual bone marrow failure., Conclusions: Knowledge of the unique phenotype and temporal evolution of GS has allowed us to develop a more comprehensive diagnostic framework. It can be investigated as part of broader research into disease pathophysiology., (Copyright © 2023 American Academy of Allergy, Asthma & Immunology. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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7. Are the Healthy Vulnerable? Cytomegalovirus Seropositivity in Healthy Adults Is Associated With Accelerated Epigenetic Age and Immune Dysregulation.
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Poloni C, Szyf M, Cheishvili D, and Tsoukas CM
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- Aged, Asymptomatic Infections, DNA Methylation, Humans, Middle Aged, CD4-Positive T-Lymphocytes immunology, CD8-Positive T-Lymphocytes immunology, Cytomegalovirus Infections diagnosis, Cytomegalovirus Infections immunology, Epigenesis, Genetic
- Abstract
Background: Evaluating age as a risk factor for susceptibility to infectious diseases, particularly coronavirus disease 2019 (COVID-19), is critical. Cytomegalovirus (CMV) serologic prevalence increases with age and associates with inflammatory-mediated diseases in the elderly. However, little is known regarding the subclinical impact of CMV and risk it poses to healthy older adults. Prior to the COVID-19 pandemic we conducted a study to determine the association of CMV to biologic age and immune dysregulation., Methods: Community-dwelling, healthy adults older than 60 years were evaluated using DNA methylation assays to define epigenetic age (EpiAge) and T-cell immunophenotyping to assess immune dysregulation., Results: All subjects were healthy and asymptomatic. Those CMV seropositive had more lymphocytes, CD8 T cells, CD28- T cells, decreased CD4:CD8 cell ratios, and had higher average EpiAge (65.34 years) than those CMV seronegative (59.53 years). Decreased percent CD4 (P = .003) and numbers of CD4 T cells (P = .0199) correlated with increased EpiAge., Conclusions: Our novel findings distinguish altered immunity in the elderly based on CMV status. Chronic CMV infection in healthy, older adults is associated with indicators of immune dysregulation, both of which correlate to differences in EpiAge., (© The Author(s) 2021. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: journals.permissions@oup.com.)
- Published
- 2022
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8. Good's Syndrome: Time to Move on From Reviewing the Past.
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Kabir A, Alizadehfar R, and Tsoukas CM
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- Autoimmunity, Biomarkers, Clinical Decision-Making, Disease Management, Disease Susceptibility immunology, Humans, Immunologic Deficiency Syndromes epidemiology, Immunologic Deficiency Syndromes therapy, Organ Specificity immunology, Phenotype, Symptom Assessment, Immunologic Deficiency Syndromes diagnosis, Immunologic Deficiency Syndromes etiology
- Abstract
For seven decades, the pathophysiology of Good's syndrome (GS) has remained a mystery, with few attempts to solve it. Initially described as an association between hypogammaglobulinemia and thymoma, controversy exists whether this is a unique disease, or a subgroup of Common Variable Immune Deficiency (CVID). Recently, some distinguishing aspects of both syndromes have come to light reflecting fundamental differences in their underlying pathophysiology. GS and CVID differ in demographic features and immune phenotype. GS is found almost exclusively in adults and is characterized by a significantly reduced or absence of peripheral B cells. In CVID, which also occurs in children, most patients have normal or slightly reduced peripheral B cells, with a distinguishing feature of low memory B cells. Similarly, differences in T cell dysregulation and manifestations of hematologic cytopenias may further distinguish GS from CVID. Knowledge of the clinical phenotype of this rare adult immune deficiency stems from individual case reports, retrospective, and cross-sectional data on a few cohorts with a limited number of well characterized patients. The understanding of pathophysiology in GS is hampered by the incomplete and inconsistent reporting of clinical and laboratory data, with a limited knowledge of its natural history. In this mini review, we discuss current state of the art data and identify research gaps. In order to resolve controversies and fill in knowledge gaps, we propose a coordinated paradigm shift from incidence reporting to robust investigative studies, addressing mechanisms of disease. We hope this novel approach sets a clear direction to solve the current controversies., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Kabir, Alizadehfar and Tsoukas.)
- Published
- 2022
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9. Influence of NKG2C Genotypes on HIV Susceptibility and Viral Load Set Point.
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Alsulami K, Bolastig N, Dupuy FP, Mabanga T, Gilbert L, Kiani Z, Routy JP, Bruneau J, Thomas R, Tremblay C, Tsoukas CM, Szabo J, Côté P, Trottier B, LeBlanc R, Rouleau D, and Bernard NF
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- Alleles, Coinfection genetics, Coinfection immunology, Coinfection virology, Cytomegalovirus Infections genetics, Cytomegalovirus Infections immunology, Cytomegalovirus Infections virology, Female, Gene Frequency, Genotype, HIV Infections immunology, HIV Infections virology, HIV Seronegativity genetics, HIV Seronegativity immunology, Humans, Killer Cells, Natural metabolism, Male, NK Cell Lectin-Like Receptor Subfamily C metabolism, Genetic Predisposition to Disease genetics, HIV Infections genetics, NK Cell Lectin-Like Receptor Subfamily C genetics, Viral Load genetics
- Abstract
NKG2C is an activating NK cell receptor encoded by a gene having an unexpressed deletion variant. Cytomegalovirus (CMV) infection expands a population of NKG2C
+ NK cells with adaptive-like properties. Previous reports found that carriage of the deleted NKG2C- variant was more frequent in people living with HIV (PLWH) than in HIV- controls unexposed to HIV. The frequency of NKG2C+ NK cells positively correlated with HIV viral load (VL) in some studies and negatively correlated with VL in others. Here, we investigated the link between NKG2C genotype and HIV susceptibility and VL set point in PLWH. NKG2C genotyping was performed on 434 PLWH and 157 HIV-exposed seronegative (HESN) subjects. Comparison of the distributions of the three possible NKG2C genotypes in these populations revealed that the frequencies of NKG2C+/+ and NKG2C+/- carriers did not differ significantly between PLWH and HESN subjects, while that of NKG2C-/- carriers was higher in PLWH than in HESN subjects, in which none were found ( P = 0.03, χ2 test). We were unable to replicate that carriage of at least 1 NKG2C- allele was more frequent in PLWH. Information on the pretreatment VL set point was available for 160 NKG2C+/+ , 83 NKG2C+/- , and 6 NKG2C-/- PLWH. HIV VL set points were similar between NKG2C genotypes. The frequency of NKG2C+ CD3- CD14- CD19- CD56dim NK cells and the mean fluorescence intensity (MFI) of NKG2C expression on NK cells were higher on cells from CMV+ PLWH who carried 2, versus 1, NKG2C+ alleles. We observed no correlations between VL set point and either the frequency or the MFI of NKG2C expression. IMPORTANCE We compared NKG2C allele and genotype distributions in subjects who remained HIV uninfected despite multiple HIV exposures (HESN subjects) with those in the group PLWH. This allowed us to determine whether NKG2C genotype influenced susceptibility to HIV infection. The absence of the NKG2C-/- genotype among HESN subjects but not PLWH suggested that carriage of this genotype was associated with HIV susceptibility. We calculated the VL set point in a subset of 252 NKG2C -genotyped PLWH. We observed no between-group differences in the VL set point in carriers of the three possible NKG2C genotypes. No significant correlations were seen between the frequency or MFI of NKG2C expression on NK cells and VL set point in cytomegalovirus-coinfected PLWH. These findings suggested that adaptive NK cells played no role in establishing the in VL set point, a parameter that is a predictor of the rate of treatment-naive HIV disease progression.- Published
- 2021
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10. HIV exposed seronegative (HESN) compared to HIV infected individuals have higher frequencies of telomeric Killer Immunoglobulin-like Receptor (KIR) B motifs; Contribution of KIR B motif encoded genes to NK cell responsiveness.
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Jackson E, Zhang CX, Kiani Z, Lisovsky I, Tallon B, Del Corpo A, Gilbert L, Bruneau J, Thomas R, Côté P, Trottier B, LeBlanc R, Rouleau D, Tremblay C, Tsoukas CM, Routy JP, Ni X, Mabanga T, and Bernard NF
- Subjects
- Cells, Cultured, Coculture Techniques, Gene Frequency, Genetic Load, HIV Infections genetics, HLA Antigens immunology, Haplotypes, Humans, Linkage Disequilibrium, Prospective Studies, Receptors, KIR genetics, Receptors, KIR metabolism, Receptors, KIR2DL5 genetics, Receptors, KIR2DL5 metabolism, Receptors, KIR3DS1 chemistry, Telomere, HIV Infections immunology, HIV Seronegativity, Killer Cells, Natural immunology, Lymphocyte Activation, Receptors, KIR3DS1 genetics, Receptors, KIR3DS1 metabolism
- Abstract
Previously, we showed that Killer Immunoglobulin-like Receptor (KIR)3DS1 homozygotes (hmz) are more frequent in HIV exposed seronegative (HESN) than in recently HIV infected (HIV+) individuals. KIR3DS1 encodes an activating Natural Killer (NK) cell receptor (NKR). The link between KIR genotype and HIV outcomes likely arises from the function that NK cells acquire through expression of particular NKRs. An initial screen of 97 HESN and 123 HIV+ subjects for the frequency of KIR region gene carriage observed between-group differences for several telomeric KIR region loci. In a larger set of up to 106 HESN and 439 HIV+ individuals, more HESN than HIV+ subjects were KIR3DS1 homozygotes, lacked a full length KIR2DS4 gene and carried the telomeric group B KIR haplotype motif, TB01. TB01 is characterized by the presence of KIR3DS1, KIR2DL5A, KIR2DS3/5 and KIR2DS1, in linkage disequilibrium with each other. We assessed which of the TB01 encoded KIR gene products contributed to NK cell responsiveness by stimulating NK cells from 8 HIV seronegative KIR3DS1 and TB01 motif homozygotes with 721.221 HLA null cells and evaluating the frequency of KIR3DS1+/-KIR2DL5+/-, KIR3DS1+/-KIR2DS1+/-, KIR3DS1+/-KIR2DS5+/- NK cells secreting IFN-γ and/or expressing CD107a. A higher frequency of NK cells expressing, versus not, KIR3DS1 responded to 721.221 stimulation. KIR2DL5A+, KIR2DS1+ and KIR2DS5+ NK cells did not contribute to 721.221 responses or modulate those by KIR3DS1+ NK cells. Thus, of the TB01 KIR gene products, only KIR3DS1 conferred responsiveness to HLA-null stimulation, demonstrating its ligation can activate ex vivo NK cells.
- Published
- 2017
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11. Comprehensive evaluation of the immune risk phenotype in successfully treated HIV-infected individuals.
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Ndumbi P, Gilbert L, and Tsoukas CM
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- Adult, Aged, Antiretroviral Therapy, Highly Active, CD4-CD8 Ratio, CD4-Positive T-Lymphocytes drug effects, CD57 Antigens immunology, Cellular Senescence drug effects, Cytokines immunology, Female, Humans, Male, Middle Aged, Pilot Projects, Telomere chemistry, Telomere immunology, Tumor Necrosis Factor-alpha immunology, Anti-HIV Agents therapeutic use, CD4-Positive T-Lymphocytes immunology, HIV Infections drug therapy, HIV Infections immunology
- Abstract
Background: Despite successful treatment and CD4+ T-cell recovery, HIV-infected individuals often experience a profound immune dysregulation characterized by a persistently low CD4:CD8 T-cell ratio. This residual immune dysregulation is reminiscent of the Immune Risk Phenotype (IRP) previously associated with morbidity and mortality in the uninfected elderly (>85 years). The IRP consists of laboratory markers that include: a low CD4:CD8 T-cell ratio, an expansion of CD8+CD28- T-cells and cytomegalovirus (CMV) seropositivity. Despite the significant overlap in immunological phenotypes between normal aging and HIV infection, the IRP has never been evaluated in HIV-infected individuals. In this pilot study we characterized immune changes associated with the IRP in a sample of successfully treated HIV-infected subjects., Methods: 18 virologically suppressed HIV-infected subjects were categorized into 2 groups based on their IRP status; HIV+IRP+, (n = 8) and HIV+IRP-, (n = 10) and compared to 15 age-matched HIV uninfected IRP negative controls. All individuals were assessed for functional and phenotypic immune characteristics including: pro-inflammatory cytokine production, antigen-specific proliferation capacity, replicative senescence, T-cell differentiation and lymphocyte telomere length., Results: Compared to HIV-infected subjects without an IRP, HIV+IRP+ subjects exhibited a higher frequency of TNF-α-producing CD8+ T-cells (p = 0.05) and a reduced proportion of CD8+ naïve T-cells (p = 0.007). The IRP status was also associated with a marked up-regulation of the replicative senescence markers CD57 and KLGR1, on the surface of CD8+T-cells (p = 0.004). Finally, HIV+IRP+ individuals had a significantly shorter mean lymphocyte telomere length than their non-IRP counterparts (p = 0.03)., Conclusions: Our findings suggest that, despite similar levels of treatment-mediated viral suppression, the phenotypic and functional immune characteristics of HIV+IRP+ individuals are distinct from those observed in non-IRP individuals. The IRP appears to identify a subset of treated HIV-infected individuals with a higher degree of immune senescence.
- Published
- 2015
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12. Time to seroconversion in HIV-exposed subjects carrying protective versus non protective KIR3DS1/L1 and HLA-B genotypes.
- Author
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Tallon BJ, Bruneau J, Tsoukas CM, Routy JP, Kiani Z, Tan X, and Bernard NF
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- Adult, Alleles, Female, Genetic Association Studies, Genotype, HIV Infections immunology, HIV Infections virology, HIV Seropositivity immunology, HIV-1 genetics, HIV-1 immunology, HIV-1 pathogenicity, HLA-A Antigens immunology, HLA-B Antigens immunology, Humans, Killer Cells, Natural immunology, Male, Middle Aged, HIV Infections genetics, HIV Seropositivity genetics, HLA-A Antigens genetics, HLA-B Antigens genetics, Receptors, KIR3DL1 genetics
- Abstract
Natural killer (NK) cells play a role in the clearance of viral infections. Combinations of alleles at the polymorphic HLA-B locus and the NK cell surface killer immunoglobulin-like receptor locus KIR3DL1/S1 have been shown to influence time to AIDS in HIV-infected individuals and risk of seroconversion in HIV exposed seronegative (HESN) subjects. Here, we assessed time to seroconversion or duration of seronegative status in a group of 168 HIV exposed individuals, including 74 seroconverters and 94 HESN based on carriage or not of KIR3DL1/S1/HLA-B genotypes previously shown to be associated with protection from infection and/or slow time to AIDS. KIR3DL1/S1 genotyping was performed by sequence-specific primer polymerase chain reaction using two pairs of specific primers for each locus. The MHC class IB locus was typed to four-position resolution to resolve Bw4 and Bw6 alleles and the amino acid present at position 80. KIR3DL1/S1 heterozygotes became HIV infected significantly faster than KIR3DS1 homozygotes. Individuals who carried both KIR3DS1 and Bw4*80I did not remain HIV seronegative longer than those from a control group who were homozygous for HLA-Bw6 and carried no HLA-A locus Bw4 alleles Subjects who were *h/*y+B*57 showed a trend towards slower time to serconversion than those with other KIR3DL1 homozygous and KIR3DL1/S1 heterozygous genotypes. Thus, KIR3DS1 homozygosity is associated with protection from HIV infection while co-carriage of KIR3DS1 and Bw4*80I is not. The requirements for protection from HIV infection can differ from those that influence time to AIDS in HIV infected individuals.
- Published
- 2014
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13. Delay in cART initiation results in persistent immune dysregulation and poor recovery of T-cell phenotype despite a decade of successful HIV suppression.
- Author
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Ndumbi P, Falutz J, Pant Pai N, and Tsoukas CM
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- Adult, CD4 Lymphocyte Count, HIV Infections immunology, Humans, Immune System immunology, Male, Middle Aged, Phenotype, Retrospective Studies, Time Factors, Treatment Outcome, Viral Load, Anti-HIV Agents therapeutic use, Antiretroviral Therapy, Highly Active methods, CD4-Positive T-Lymphocytes immunology, HIV Infections drug therapy, Immune System drug effects
- Abstract
Background: Successful combination antiretroviral therapy (cART) increases levels of CD4+ T-cells, however this increase may not accurately reflect long-term immune recovery since T-cell dysregulation and loss of T-cell homeostasis often persist. We therefore assessed the impact of a decade of effective cART on immune regulation, T-cell homeostasis, and overall T-cell phenotype., Methods: We conducted a retrospective study of 288 HIV+ cART-naïve patients initiating therapy. We identified 86 individuals who received cART for at least a decade, of which 44 consistently maintained undetectable plasma HIV-RNA levels throughout therapy. At baseline, participants were classified into three groups according to pre-treatment CD4+ T-cell counts: Group I (CD4<200 cells/mm3); Group II (CD4: 200-350 cells/mm3); Group III (CD4>350 cells/mm3). Outcomes of interest were: (1) CD4+ T-cell count restoration (CD4>532 cells/mm3); (2) normalization of CD4:CD8 T-cell ratio (1.2-3.3); (3) maintenance of CD3+ T-cell homeostasis (CD3: 65%-85% of peripheral lymphocytes); (4) normalization of the complete T-cell phenotype (TCP)., Results: Despite a decade of sustained successful cART, complete T-cell phenotype normalization only occurred in 16% of patients, most of whom had initiated therapy at high CD4+ T-cell counts (>350 cells/mm3). The TCP parameter that was the least restored among patients was the CD4:CD8 T-cell ratio., Conclusions: Failure to normalize the complete T-cell phenotype was most apparent in patients who initiated cART with a CD4+ T-cell count <200 cells/mm3. The impact of this impaired T-cell phenotype on life-long immune function and potential comorbidities remains to be elucidated.
- Published
- 2014
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14. Clinical impact of altered T-cell homeostasis in treated HIV patients enrolled in a large observational cohort.
- Author
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Ndumbi P, Gillis J, Raboud JM, Cooper C, Hogg RS, Montaner JS, Burchell AN, Loutfy MR, Machouf N, Klein MB, and Tsoukas CM
- Subjects
- Adult, Cohort Studies, Female, HIV Infections mortality, HIV Infections pathology, Humans, Male, Middle Aged, Survival Analysis, T-Lymphocyte Subsets chemistry, Anti-HIV Agents therapeutic use, CD3 Complex analysis, HIV Infections drug therapy, HIV Infections immunology, Homeostasis, T-Lymphocyte Subsets immunology, T-Lymphocyte Subsets physiology
- Abstract
Objective(s): We investigated the probability of transitioning in or out of the CD3⁺ T-cell homeostatic range during antiretroviral therapy, and we assessed the clinical impact of lost T-cell homeostasis (TCH) on AIDS-defining illnesses (ADIs) or death., Design: Within the Canadian Observational Cohort (CANOC), we studied 4463 antiretroviral therapy (ART)-naive HIV-positive patients initiating combination ART (cART) between 2000 and 2010., Methods: CD3⁺ trajectories were estimated using a four state Markov model. CD3⁺ T-cel percentage states were classified as follows: very low (<50%), low (50-64%), normal (65-85%), and high (>85%). Covariates associated with transitioning between states were examined. The association between CD3⁺ T-cell percentage states and time to ADI/death from cART initiation was determined using Cox proportional hazards models., Results: A total of 4463 patients were followed for a median of 3 years. Two thousand, five hundred and eight (56%) patients never transitioned from their baseline CD3⁺ T-cell percentage state; 85% of these had normal TCH. In multivariable analysis, individuals with time-updated low CD4⁺ cell count, time-updated detectable viral load, older age, and hepatitis C virus (HCV) coinfection were less likely to maintain TCH. In the multivariable proportional hazards model, both very low and high CD3⁺ T-cell percentages were associated with increased risk of ADI/death [adjusted hazard ratio=1.91 (95% confidence interval, CI: 1.27-2.89) and hazard ratio=1.49 (95% CI: 1.13-1.96), respectively]., Conclusion: Patients with very low or high CD3⁺ T-cell percentages are at risk for ADIs/death. To our knowledge, this is the first study linking altered TCH and morbidity/mortality in cART-treated HIV-positive patients.
- Published
- 2013
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15. Relative contribution of HIV-specific functional lymphocyte subsets restricted by protective and non-protective HLA alleles.
- Author
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Peretz Y, Marra O, Thomas R, Legault D, Côté P, Boulassel MR, Rouleau D, Routy JP, Sékaly RP, Tsoukas CM, Tremblay C, and Bernard NF
- Subjects
- Alleles, Antigens, Viral immunology, Cells, Cultured, Cytokines metabolism, Enzyme-Linked Immunospot Assay, Female, HIV Long-Term Survivors, Humans, Male, HIV immunology, HIV Infections immunology, HLA Antigens immunology, Lymphocyte Subsets immunology
- Abstract
Expression of major histocompatibility complex (MHC) class I alleles such as B*57 and B*27 are associated with slow HIV disease progression. HIV-specific immune responses in slow progressors (SP) are characterized by a poly-functional profile. We previously observed within infected subjects that HIV peptide-specific responses could differ from each other in their functional composition. We investigate here whether responses restricted by MHC class I alleles associated with slow disease progression have a more poly-functional profile than responses restricted by other alleles. We stimulated peripheral blood mononuclear cells (PBMCs) isolated from 36 chronically HIV-infected individuals with a panel of optimal peptides restricted by the HLA alleles expressed by each subject, and assessed the contribution of single IL-2-, single IFN-γ-, and IFN-γ/IL-2-secreting lymphocytes to the total response measured using a dual color ELISPOT assay. The contribution of functional subsets to responses restricted by HLA B*57/B*27 was similar in SP and progressors. For responses restricted by other MHC class I alleles, dual IFN-γ/IL-2-secreting lymphocytes contributed significantly more to the total response in SP than progressors. Within SP subjects, peptides restricted by both B*57/B*27 and other alleles stimulated responses with similar functional profiles. In progressors, peptides restricted by B*57/B*27 stimulated responses composed of a significantly greater proportion of IFN-γ/IL-2-secreting cells than peptides restricted by other alleles. Within progressors, the contribution of IFN-γ/IL-2-secreting lymphocytes was greater to epitopes restricted by protective HLA alleles compared with responses restricted by other alleles. HLA haplotypes influence the relative functional composition of HIV-specific responses.
- Published
- 2011
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16. Receptor-ligand requirements for increased NK cell polyfunctional potential in slow progressors infected with HIV-1 coexpressing KIR3DL1*h/*y and HLA-B*57.
- Author
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Kamya P, Boulet S, Tsoukas CM, Routy JP, Thomas R, Côté P, Boulassel MR, Baril JG, Kovacs C, Migueles SA, Connors M, Suscovich TJ, Brander C, Tremblay CL, and Bernard N
- Subjects
- Adult, Aged, Female, HIV Infections virology, HLA-B Antigens genetics, Humans, Ligands, Male, Middle Aged, Receptors, KIR3DL1 genetics, Young Adult, HIV Infections immunology, HIV Long-Term Survivors, HIV-1 immunology, HLA-B Antigens metabolism, Killer Cells, Natural immunology, Receptors, KIR3DL1 metabolism
- Abstract
Carriage of the natural killer (NK) receptor genotype KIR3DL1*h/*y with its HLA-B*57 ligand (*h/*y+B*57) is associated with slow time to AIDS and low viral load (VL). To provide a functional basis for these epidemiological observations, we assessed whether HIV-1-infected slow progressors (SP) carrying the *h/*y+B*57 compound genotype would have increased NK cell polyfunctional potential in comparison to SP with other killer immunoglobulin-like receptor (KIR)/HLA compound genotypes and whether this enhanced polyfunctionality was dependent upon the coexpression of both KIR3DL1*h/*y and HLA-B*57. The functional potential of NK cells was investigated by stimulating peripheral blood mononuclear cells with HLA-devoid targets or single HLA transfectants. Multiparametric flow cytometry was used to detect NK cells with seven functional profiles representing all permutations of CD107a expression and gamma interferon (IFN-γ) and tumor necrosis factor alpha (TNF-α) secretion. NK cells from individuals carrying KIR3DL1 receptor-HLA-Bw4 ligand pairs had greater trifunctional responses than those from KIR3DL1 homozygotes (hmz), who were Bw6 homozygotes. NK cells from subjects carrying the *h/*y+B*57 genotypes exhibited the highest trifunctional potential, and this was dependent on cocarriage of the NK receptor and its ligand. Trifunctional cells secreted more of each function tested on a per-cell basis than each corresponding monofunctional NK subset. Although VL influenced NK functionality, individuals with defined KIR/HLA genotypes exhibited differences in NK cell polyfunctionality that could not be accounted for by VL alone. The protective effect of HLA-B*57 on slow progression to AIDS and low VL may be mediated through its interaction with KIR3DL1 alleles to educate NK cells for potent activity upon stimulation.
- Published
- 2011
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17. Mind the gap: lack of association between KIR3DL1*004/HLA‐Bw4-induced natural killer cell function and protection from HIV infection.
- Author
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Parsons MS, Boulet S, Song R, Bruneau J, Shoukry NH, Routy JP, Tsoukas CM, and Bernard NF
- Subjects
- Gene Frequency, Humans, HIV immunology, HIV Infections genetics, HIV Infections immunology, HLA-B Antigens genetics, Immunity, Innate, Killer Cells, Natural immunology, Receptors, KIR3DL1 genetics
- Abstract
Several combinations of genes encoding KIR3DL1 alleles and their HLA‐Bw4 ligands have been linked with favorable outcomes upon exposure to or infection with human immunodeficiency virus (HIV). Some protective KIR3DL1/HLA‐Bw4 combinations confer elevated natural killer (NK) cell functional potential. The K562‐stimulated functionality of NK cells from KIR3DL1*004/HLA‐Bw4 and control genotype carriers was assessed by flow cytometry and found to be higher in KIR3DL1*004/HLA‐Bw4 carriers. However, a comparison of the frequency of this combined genotype among HIV‐exposed uninfected and HIV‐infected subjects revealed no between‐group differences. Thus, despite its ability to license NK cells, KIR3DL1*004/HLA‐Bw4 is not associated with a reduced risk of infection.
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- 2010
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18. HIV protective KIR3DL1 and HLA-B genotypes influence NK cell function following stimulation with HLA-devoid cells.
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Boulet S, Song R, Kamya P, Bruneau J, Shoukry NH, Tsoukas CM, and Bernard NF
- Subjects
- Cell Line, Transformed, Genotype, HIV Infections prevention & control, HIV-1 immunology, HLA-B Antigens metabolism, Histocompatibility Testing, Humans, K562 Cells, Killer Cells, Natural metabolism, Killer Cells, Natural virology, Leukocytes, Mononuclear immunology, Leukocytes, Mononuclear metabolism, Leukocytes, Mononuclear virology, Lymphocyte Activation genetics, Lymphocyte Subsets immunology, Lymphocyte Subsets metabolism, Lymphocyte Subsets virology, Receptors, KIR3DL1 metabolism, HIV Infections genetics, HIV Infections immunology, HLA-B Antigens genetics, Killer Cells, Natural immunology, Lymphocyte Activation immunology, Receptors, KIR3DL1 genetics
- Abstract
Epidemiological studies in humans have implicated carriage of combinations of genes encoding certain KIR3DL1 (killer Ig-like receptor 3DL1) alleles and their HLA-Bw4 ligands in slower progression to AIDS, lower viral load and protection from infection. Given that the KIR3DL1*h/*y/HLA-B*57 genetic combination is strongly associated with favorable HIV outcomes, we measured responses from NK cells isolated from these individuals by multiparametric flow cytometry for cytokine secretion and degranulation in response to stimulation with HLA-devoid cells to assess whether the KIR/HLA compound genotypes linked to better HIV outcome favor increased NK cell functional potential. Our results indicate that NK cells from these individuals had increased functional potential, particularly in the KIR3DL1(+) NK cell subset. These results support a link between KIR/HLA genotypes and NK cell function and could provide an explanation for the observation that some KIR/HLA combinations are associated protective phenotypes in the context of host-HIV interactions.
- Published
- 2010
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19. Predictive value of immune parameters before treatment interruption (TI) for CD4+ T-cell count change during TI in HIV infection.
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Huang KH, Loutfy MR, Boulet S, Toma E, Tsoukas CM, and Bernard NF
- Subjects
- Adult, Biomarkers analysis, CD28 Antigens metabolism, CD4 Lymphocyte Count, CD57 Antigens metabolism, CD8-Positive T-Lymphocytes immunology, Cell Proliferation, Cells, Cultured, Chronic Disease, HIV Infections virology, Humans, Predictive Value of Tests, Retrospective Studies, CD4-Positive T-Lymphocytes immunology, HIV Infections drug therapy, HIV Infections immunology, Viral Load
- Abstract
Background: Despite the contraindications, stopping treatment for HIV infection continues to be a common practice. Understanding whether T-cell proliferative capacity and phenotypic markers before treatment interruption (TI) can predict CD4+ T-cell count change and nadir during TI would be clinically useful., Methods: This retrospective study included 27 HIV-infected patients in the chronic phase of infection while on combination antiretroviral therapy (cART) who underwent a TI. Peripheral blood mononuclear cells from a baseline pre-TI time point were screened for T-cell proliferation to cytomegalovirus (CMV) lysate, an HIV Gag p55 peptide pool as well as positive and negative control stimuli. CD28 and CD57 expression on CD4+ and CD8+ T-cells were measured., Results: Baseline viral load, CD4+ T-cell count, pre-cART nadir CD4+ T-cell and percentage CD4+CD28+ T-cells were all predictive of the lowest CD4+ T-cell count during TI (Spearman's correlation P<0.05 for all analyses). In addition, CD4+ and CD8+ T-cells proliferation to CMV lysate, baseline CD4+ T-cell count and percentage CD4+CD57+ T-cells correlated negatively with CD4+ T-cell decrease during TI (Spearman's correlation P<0.05 for all analyses)., Conclusions: In treated chronic HIV-infected patients, pre-TI immune parameters are potential predictors for both the nadir CD4+ T-cell count and CD4+ T-cell count decrease during TI.
- Published
- 2009
20. A combined genotype of KIR3DL1 high expressing alleles and HLA-B*57 is associated with a reduced risk of HIV infection.
- Author
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Boulet S, Kleyman M, Kim JY, Kamya P, Sharafi S, Simic N, Bruneau J, Routy JP, Tsoukas CM, and Bernard NF
- Subjects
- Alleles, Cells, Cultured, Gene Frequency, Genetic Predisposition to Disease, Genotype, HIV Infections immunology, Humans, Immunity, Innate genetics, HIV Infections genetics, HIV-1, HLA-B Antigens genetics, Receptors, KIR3DL1 genetics
- Abstract
Objectives: Coexpression of certain combinations of natural killer cell receptor KIR3DL1 and HLA-B alleles is associated with slower time to AIDS. The strongest protection in terms of disease outcome in KIR3DL1 homozygotes (3DL1 hmz) is coexpression of HLA-B*57 and a set of KIR3DL1 genotypes (3DL1*h/*y) lacking alleles expressed at low levels on natural killer cells. We questioned whether this allele combination could also influence resistance to infection., Design: The genetic distribution of 3DL1*h/*y and HLA-B*57 was compared in 41 HIV-exposed uninfected and 186 recently HIV-infected 3DL1 hmz., Methods: KIR3DL1 subtyping was performed by sequencing the exons 3, 4, 5, 7-9. The major histocompatibility complex class IB locus was typed by sequence specific oligonucleotide PCR and sequencing to resolve Bw4 and Bw6 alleles and the amino acid present at position 80., Results: Percentage carriers of HLA-B*57 in HIV-exposed uninfected and individuals in a primary infection cohort was 12.2 and 4.3%, respectively (P = 0.0631), whereas that of 3DL1*h/*y was similar in both populations (P = 0.221). The 3DL1*h/*y-HLA-B*57 combined genotype was more frequent in exposed uninfected individuals (12.2%) than individuals in primary infection (2.7%) (P = 0.019; odds ratio, 5.03; 95% confidence intervals, 1.38-18.3)., Conclusion: Coexpression of 3DL1*h/*y and B*57, which has been associated with a reduced risk of progressing to AIDS in HIV-infected individuals also lowers the risk of HIV infection in exposed uninfected individuals.
- Published
- 2008
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21. HIV Gag-specific immune responses predict the rate of CD4 decline.
- Author
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Peretz Y, Tsoukas CM, and Bernard NF
- Subjects
- Adolescent, Adult, Disease Progression, Humans, Immunity, Cellular, Middle Aged, Viral Load, CD4-Positive T-Lymphocytes immunology, Genes, gag immunology, HIV Infections immunology, HIV-1 immunology, Interferon-gamma metabolism, Lymphopenia immunology
- Abstract
In the present study, we assessed whether Gag-specific interferon (IFN)-gamma secreting responses correlate with the rate of disease progression as defined by the annual rate of CD4 decline. Although neither the breadth nor the magnitude of the proteome-wide HIV-specific IFN-gamma response correlated with viral load or rate of CD4 decline, the preferential targeting of Gag is associated with slower annual CD4 T cell decline.
- Published
- 2008
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22. Immune correlates of CD4 decline in HIV-infected patients experiencing virologic failure before undergoing treatment interruption.
- Author
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Huang KH, Loutfy MR, Tsoukas CM, and Bernard NF
- Subjects
- Anti-HIV Agents therapeutic use, CD4 Lymphocyte Count, Cytomegalovirus immunology, Drug Administration Schedule, Drug Therapy, Combination, Female, HIV-1 drug effects, HIV-1 physiology, Humans, Male, Predictive Value of Tests, Reverse Transcriptase Inhibitors therapeutic use, Salvage Therapy, Viral Load, CD4-Positive T-Lymphocytes immunology, CD57 Antigens metabolism, Drug Resistance, Viral, HIV Infections drug therapy, HIV Infections immunology, HIV Infections virology, Lymphocyte Activation immunology
- Abstract
Background: The advantage of treatment interruptions (TIs) in salvage therapy remains controversial. Regardless, characterizations of the correlates of CD4 count fall during TI are important to identify since patients with virologic failure commonly stop antiretroviral (ARV) therapy. The objective of this study was to determine the predictive value of pre-TI proliferative capacity and cell surface markers for CD4 count change in HIV-infected patients experiencing virologic failure before undergoing TI., Methods: Peripheral blood mononuclear cells (PBMCs) from 13 HIV-infected patients experiencing virologic failure at baseline time points before the TI were tested for proliferation using the 5,6-carboxyfluorescein diacetate succinimidyl ester (CFSE) dilution assay and a Gag p55 peptide pool, staphylococcus enterotoxin B (SEB), cytomegalovirus (CMV) recall antigen, and anti-CD3 antibody as stimuli. CD28 and CD57 expression on CD4+ and CD8+ T-cells was measured., Results: The median changes in the CD4+ T-cell count and viral load from baseline to the TI time point corresponding to the CD4 count nadir were -44 cells/mm3 {Interquartile range (IQR) -17, -104} and +85,332 copies/mL (IQR +11,198, +283,327), respectively. CD4+ T-cell proliferation to CMV, pre-TI CD4+ T-cell count, and percent CD4+CD57+ cells correlated negatively with CD4 count change during TI (r = -0.59, p = 0.045, r = -0.61, p = 0.030 and r = -0.69, p = 0.0095, respectively; Spearman correlation). The presence of HIV-specific proliferative responses was not associated with a reduced decline in CD4 count during TI., Conclusion: The use of pre-TI immune proliferative responses and cell surface markers may have predictive value for CD4 count decline during TI.
- Published
- 2008
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23. HIV-1-specific T cell precursors with high proliferative capacity correlate with low viremia and high CD4 counts in untreated individuals.
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Calarota SA, Foli A, Maserati R, Baldanti F, Paolucci S, Young MA, Tsoukas CM, Lisziewicz J, and Lori F
- Subjects
- AIDS Vaccines immunology, AIDS Vaccines metabolism, Animals, Chronic Disease, Cohort Studies, Female, HIV Core Protein p24 immunology, HIV Core Protein p24 metabolism, HIV Infections blood, HIV Infections prevention & control, HIV-1 metabolism, Humans, Immunologic Memory, Interferon-gamma immunology, Interferon-gamma metabolism, Macaca, Male, Precursor Cells, T-Lymphoid metabolism, Precursor Cells, T-Lymphoid virology, Simian Acquired Immunodeficiency Syndrome blood, Simian Acquired Immunodeficiency Syndrome immunology, Simian Immunodeficiency Virus immunology, Simian Immunodeficiency Virus metabolism, Viremia prevention & control, CD4 Lymphocyte Count, Cell Proliferation, HIV Infections immunology, HIV-1 immunology, Precursor Cells, T-Lymphoid immunology, Viremia immunology
- Abstract
Evidences have recently suggested that the preservation of vaccine-induced memory rather than effector T cells is essential for better outcome and survival following pathogenic SIV challenge in macaques. However, an equivalent demonstration in humans is missing, and the immune correlates of HIV-1 control have been only partially characterized. We focused on the quantification of Ag-specific T cell precursors with high proliferative capacity (PHPC) using a peptide-based cultured IFN-gamma ELISPOT assay (PHPC assay), which has been shown to identify expandable memory T cells. To determine which responses correlate with viral suppression and positive immunologic outcome, PBMC from 32 chronically untreated HIV-1-infected individuals were evaluated in response to peptide pools, representing the complete HIV-1 Gag, Nef, and Rev proteins, by PHPC and IFN-gamma ELISPOT assay, which instead identifies effector T cells with low proliferative capacity. High magnitude of Gag-specific PHPC, but not ELISPOT, responses significantly correlated with low plasma viremia, due to responses directed toward p17 and p15 subunits. Only Gag p17-specific PHPC response significantly correlated with high CD4 counts. Analysis of 20 additional PBMC samples from an independent cohort of chronically untreated HIV-1-infected individuals confirmed the correlation between Gag p17-specific PHPC response and either plasma viremia (inverse correlation) or CD4 counts (direct correlation). Our results indicate that the PHPC assay is quantitatively and qualitatively different from the ELISPOT assay, supporting that different T cell populations are being evaluated. The PHPC assay might be an attractive option for individual patient management and for the design and testing of therapeutic and prophylactic vaccines.
- Published
- 2008
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24. Increased proportion of KIR3DS1 homozygotes in HIV-exposed uninfected individuals.
- Author
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Boulet S, Sharafi S, Simic N, Bruneau J, Routy JP, Tsoukas CM, and Bernard NF
- Subjects
- Adult, Case-Control Studies, Chi-Square Distribution, Disease Progression, Female, Genotype, HIV Infections genetics, HIV Seronegativity genetics, HLA-B Antigens genetics, Homozygote, Humans, Male, Prospective Studies, Sample Size, Genes, MHC Class I, HIV Infections immunology, HIV Seronegativity immunology, Killer Cells, Natural metabolism, Receptors, KIR3DS1 genetics
- Abstract
Objectives: Natural killer (NK) cell activity is increased in individuals who remain uninfected despite repeated exposures to HIV. Given that a combined major histocompatibility complex (MHC) class I and killer immunoglobulin-like receptor (KIR) KIR3D genotype has been linked to rate of HIV disease progression, we assessed whether these genotypes played a role in protection from infection., Design: The study genotyped 80 HIV-exposed uninfected (EU) and 304 subjects in HIV primary infection (PI) at the MHC class IB and KIR3DS/L1 loci., Methods: KIR3D genotyping was performed by sequence-specific primer polymerase chain reaction using two pairs of specific primers for each locus. The MHC class IB locus was typed by sequence-specific oligonucleotide polymerase chain reaction and sequencing to resolve Bw4 and Bw6 alleles and the amino acid present at position 80., Results: Comparison of the genetic distribution of KIR3D, HLA Bw4 and HLA Bw4-I80 genotypes in EU versus PI subjects reveal an increased proportion of KIR3DS1 homozygotes in EU (11/80, 13.8%) compared to subjects in PI (16/304, 5.3%). Analyses of combined MHC class I and KIR3D expression show no differences between the two populations., Conclusions: Homozygosity for the activating NK receptor KIR3DS1, may contribute to the more active NK cell function observed in EU and their relative resistance to HIV infection.
- Published
- 2008
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25. [Indinavir-associated tubulointerstitial renal disease].
- Author
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Gagnon RF, Mehio A, Iqbal S, and Tsoukas CM
- Subjects
- Adult, Crystallization, Female, HIV Infections complications, HIV Infections drug therapy, HIV Protease Inhibitors chemistry, HIV Protease Inhibitors urine, Humans, Indinavir chemistry, Indinavir urine, Leukocytes, Urine chemistry, Urine cytology, HIV Protease Inhibitors adverse effects, Indinavir adverse effects, Nephritis, Interstitial chemically induced
- Abstract
Indinavir, used for the treatment of HIV disease, forms distinctive crystals in the urine. The crystalluria has been associated principally with several urinary tract abnormalities which may require discontinuation of the drug. We present a case of progressive leucocyturia and renal impairment occurring during indinavir treatment which illustrates vividly the impact of the crystalluria on the tubulointerstitial renal compartment.
- Published
- 2007
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26. Functional T cell subsets contribute differentially to HIV peptide-specific responses within infected individuals: correlation of these functional T cell subsets with markers of disease progression.
- Author
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Peretz Y, Ndongala ML, Boulet S, Boulassel MR, Rouleau D, Côté P, Longpré D, Routy JP, Falutz J, Tremblay C, Tsoukas CM, Sékaly RP, and Bernard NF
- Subjects
- Antigens, Viral immunology, CD4 Lymphocyte Count, Cells, Cultured, Chronic Disease, Disease Progression, Enzyme-Linked Immunosorbent Assay, Female, HIV Long-Term Survivors, Humans, Interferon-gamma metabolism, Interleukin-2 metabolism, Lymphocyte Activation, Male, Middle Aged, Peptides immunology, T-Lymphocytes, Helper-Inducer immunology, Viral Load, CD4-Positive T-Lymphocytes immunology, HIV immunology, HIV Infections immunology, Interferon-gamma immunology, Interleukin-2 immunology, T-Lymphocyte Subsets immunology
- Abstract
Using a dual color ELISPOT assay able to detect HIV-specific IFN-gamma, IL-2 and dual IFN-gamma/IL-2 secreting lymphocytes we screened for HIV peptide-specific responses directed against the entire HIV proteome in two groups of untreated HIV-infected individuals, slow progressors (SP) and progressors. We found that the three functional lymphocyte subsets contributed differentially to individual HIV peptide-specific responses within a study subject. Among the identified stimulatory peptides, a higher proportion induced dual IFN-gamma/IL-2 secretion in SP than progressors. While the magnitude of single IFN-gamma secreting lymphocytes is similar between groups, the magnitude of peptide-specific dual IFN-gamma/IL-2 secreting lymphocytes is significantly more intense in SP. Neither single nor total IFN-gamma secreting cell magnitude and breadth measurements correlated with CD4 cell count or viral load whereas both parameters of dual IFN-gamma/IL-2 secreting responses correlated positively with CD4 counts and negatively with viremia.
- Published
- 2007
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27. Indinavir crystalluria.
- Author
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Gagnon RF, Alli AI, Watters AK, and Tsoukas CM
- Subjects
- Crystallization, HIV Infections urine, HIV Protease Inhibitors chemistry, HIV Protease Inhibitors urine, Humans, Indinavir chemistry, Indinavir urine, HIV Infections drug therapy, HIV Protease Inhibitors adverse effects, Indinavir adverse effects, Kidney Diseases chemically induced
- Published
- 2006
- Full Text
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28. APOBEC3G genetic variants and their association with risk of HIV infection in highly exposed Caucasians.
- Author
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Valcke HS, Bernard NF, Bruneau J, Alary M, Tsoukas CM, and Roger M
- Subjects
- APOBEC-3G Deaminase, Cytidine Deaminase, Disease Susceptibility, Gene Frequency, HIV Infections genetics, HIV Seronegativity, Humans, Introns, Prospective Studies, Risk-Taking, Virus Replication, White People, HIV Infections transmission, HIV-1, Mutation, Nucleoside Deaminases genetics, Repressor Proteins genetics
- Abstract
The cytosine deaminase APOBEC3G has been identified as a host factor that inhibits HIV-1 replication. We investigated whether genetic variants of APOBEC3G that could potentially affect the protein's expression or function were associated with the risk of infection in 122 Caucasians highly exposed to HIV-1. A novel C40693T variant was significantly associated with an increased risk of infection, suggesting that there might be a role for APOBEC3G in susceptibility to HIV-1 infection that warrants further investigation.
- Published
- 2006
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29. Low urine pH is associated with reduced indinavir crystalluria in indinavir-treated HIV-infected individuals.
- Author
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Gagnon RF, Alli AI, Edwardes MD, Watters AK, and Tsoukas CM
- Subjects
- Adult, Aged, Anti-HIV Agents adverse effects, Crystallization, Female, Humans, Hydrogen-Ion Concentration, Indinavir adverse effects, Male, Middle Aged, Specific Gravity, Urinalysis, Urine, Anti-HIV Agents therapeutic use, Anti-HIV Agents urine, HIV Infections drug therapy, HIV Infections urine, Indinavir therapeutic use, Indinavir urine
- Abstract
Indinavir is a potent HIV-1 protease inhibitor included in current antiretroviral therapeutic regimens. It is associated with renal and urological complications ascribed to indinavir crystalluria. We have previously reported that indinavir crystalluria is frequently observed soon after initiation of therapy. In a cohort of 54 asymptomatic indinavir-naive HIV-1-infected individuals during their first year of treatment with indinavir, approximately 25% of urinalyses (U/A) contained indinavir crystals. Because the determinants of the crystalluria are unknown, we examined the relationship between urine specific gravity (SG) and pH, singly and in combination, and indinavir crystalluria in these subjects. A total of 579 U/A were obtained from the study subjects at their scheduled monthly outpatient medical assessments. The frequency of indinavir crystalluria was lower in U/A with lower pH, irrespective of the SG. Conversely, U/A with high pH (> or = 6.0) had a higher frequency of indinavir crystalluria, which was further influenced by the urine SG. As a result, nearly half of the U/A (46.7%) with high pH (> or = 6.0) and intermediate-high SG (> or = 1.015) contained indinavir crystals. In conclusion, the frequency of indinavir crystalluria in asymptomatic HIV-1 infected individuals during their first year of treatment with indinavir was markedly influenced by the urine pH and SG. Our findings suggest that low urine pH may have a protective effect against indinavir crystalluria across the entire range of urine SG.
- Published
- 2006
- Full Text
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30. Human immunodeficiency virus (HIV)-specific gamma interferon secretion directed against all expressed HIV genes: relationship to rate of CD4 decline.
- Author
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Peretz Y, Alter G, Boisvert MP, Hatzakis G, Tsoukas CM, and Bernard NF
- Subjects
- CD4-Positive T-Lymphocytes virology, Female, HIV Infections transmission, Humans, Interferon-gamma analysis, Interferon-gamma genetics, Lymphocyte Activation, Male, CD4-Positive T-Lymphocytes immunology, Genes, Viral immunology, HIV genetics, HIV immunology, HIV Infections immunology, Interferon-gamma immunology
- Abstract
Immune responses to human immunodeficiency virus (HIV) are detected at all stages of infection and are believed to be responsible for controlling viremia. This study seeks to determine whether gamma interferon (IFN-gamma)-secreting HIV-specific T-cell responses influence disease progression as defined by the rate of CD4 decline. The study population consisted of 31 subjects naive to antiretroviral therapy. All were monitored clinically for a median of 24 months after the time they were tested for HIV-specific responses. The rate of CD4+-T-cell loss was calculated for all participants from monthly CD4 counts. Within this population, 17 subjects were classified as typical progressors, 6 subjects were classified as fast progressors, and 8 subjects were classified as slow progressors. Peripheral blood mononuclear cells were screened for HIV-specific IFN-gamma responses to all expressed HIV genes. Among the detected immune responses, 48% of the recognized peptides were encoded by Gag and 19% were encoded by Nef gene products. Neither the breadth nor the magnitude of HIV-specific responses correlated with the viral load or rate of CD4 decline. The breadth and magnitude of HIV-specific responses did not differ significantly among typical, fast, and slow progressors. These results support the conclusion that although diverse HIV-specific IFN-gamma-secreting responses are mounted during the asymptomatic phase, these responses do not seem to modulate disease progression rates.
- Published
- 2005
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31. Selection of molecular descriptors with artificial intelligence for the understanding of HIV-1 protease peptidomimetic inhibitors-activity.
- Author
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Sirois S, Tsoukas CM, Chou KC, Wei D, Boucher C, and Hatzakis GE
- Subjects
- Algorithms, Computer Simulation, Databases as Topic, Genetics, HIV Protease chemistry, HIV Protease drug effects, HIV Protease Inhibitors pharmacology, Least-Squares Analysis, Molecular Mimicry, Peptides classification, Predictive Value of Tests, Artificial Intelligence, Drug Design, HIV Protease Inhibitors chemistry, Peptides chemistry, Quantitative Structure-Activity Relationship
- Abstract
Quantitative Structure Activity Relationship (QSAR) techniques are used routinely by computational chemists in drug discovery and development to analyze datasets of compounds. Quantitative numerical methods like Partial Least Squares (PLS) and Artificial Neural Networks (ANN) have been used on QSAR to establish correlations between molecular properties and bioactivity. However, ANN may be advantageous over PLS because it considers the interrelations of the modeled variables. This study focused on the HIV-1 Protease (HIV-1 Pr) inhibitors belonging to the peptidomimetic class of compounds. The main objective was to select molecular descriptors with the best predictive value for antiviral potency (Ki). PLS and ANN were used to predict Ki activity of HIV-1 Pr inhibitors and the results were compared. To address the issue of dimensionality reduction, Genetic Algorithms (GA) were used for variable selection and their performance was compared against that of ANN. Finally, the structure of the optimum ANN achieving the highest Pearson's-R coefficient was determined. On the basis of Pearson's-R, PLS and ANN were compared to determine which exhibits maximum performance. Training and validation of models was performed on 15 random split sets of the master dataset consisted of 231 compounds. For each compound 192 molecular descriptors were considered. The molecular structure and constant of inhibition (Ki) were selected from the NIAID database. Study findings suggested that non-covalent interactions such as hydrophobicity, shape and hydrogen bonding describe well the antiviral activity of the HIV-1 Pr compounds. The significance of lipophilicity and relationship to HIV-1 associated hyperlipidemia and lipodystrophy syndrome warrant further investigation.
- Published
- 2005
- Full Text
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32. Comparison of HIV-specific CD8 T-cell responses among uninfected individuals exposed to HIV parenterally and mucosally.
- Author
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Makedonas G, Bruneau J, Alary M, Tsoukas CM, Lowndes CM, Lamothe F, and Bernard NF
- Subjects
- Adult, Amino Acid Sequence, Enzyme-Linked Immunosorbent Assay methods, Female, HLA-A Antigens immunology, HLA-A2 Antigen immunology, Histocompatibility Testing, Humans, Immunity, Cellular, Immunity, Mucosal, Immunodominant Epitopes immunology, Interferon-gamma biosynthesis, Male, Middle Aged, Molecular Sequence Data, Needle Sharing adverse effects, Sexually Transmitted Diseases, Viral immunology, Substance Abuse, Intravenous complications, Viral Proteins genetics, Viral Proteins immunology, CD8-Positive T-Lymphocytes immunology, HIV Infections immunology, HIV Infections transmission, HIV-1
- Abstract
Objective: To assess the influence of route of HIV exposure on the development of HIV-specific CD8 T-cell responses in exposed, uninfected (EU) individuals., Design: Two groups of EU exposed to virus through either sexual or intravenous contact were studied. Group I included subjects (n = 20) who had unprotected sexual contact with known HIV-infected partners and no intravenous HIV exposure; Group II included individuals (n = 27) who had shared needles with HIV-infected partners and had no sexual exposure to this virus. Between-group comparisons were made for the proportion of responders, breadth, magnitude, and specificity of HIV-specific responses., Methods: : The interferon-gamma ELISPOT assay was used to detect HIV-specific effector activity. Peripheral blood mononuclear cells (PBMC) from each subject were stimulated with a panel of HIV peptides restricted to the MHC class I alleles expressed by the individual., Results: A similar proportion of EU tested from each group (35.0% Group I versus 22.2% Group II) recognized at least one HIV peptide. Group I and II subjects recognized HIV peptides with a similar cumulative intensity of 130 +/- 67.5 and 182.9 +/- 184.2 spot forming cells/1 x 10 PBMC, respectively, and similar magnitude per stimulatory peptide of 82.7 and 78.4 SFC/1 x 10 PBMC, respectively. The proportion of stimulatory peptides derived from HIV Gag, reverse transcriptase, Env, and Nef was not significantly different between the two EU groups. HLA-A*0201 restricted HIV epitopes immunodominant in infected individuals are rarely stimulatory in EU subjects., Conclusions: Both mucosal and parenteral exposure to HIV can elicit HIV-specific CD8 T-cell responses with similar characteristics.
- Published
- 2005
33. Neural network-longitudinal assessment of the Electronic Anti-Retroviral THerapy (EARTH) cohort to follow response to HIV-treatment.
- Author
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Hatzakis GE, Mathur M, Gilbert L, Panos G, Wanchu A, Patel AK, Maniar JK, and Tsoukas CM
- Subjects
- Adult, Cohort Studies, Computer Simulation, Disease Progression, Female, HIV Infections virology, Humans, Lymphocyte Count, Male, Pilot Projects, RNA, Viral isolation & purification, ROC Curve, Regression Analysis, Treatment Outcome, Viral Load, Anti-Retroviral Agents therapeutic use, HIV Infections drug therapy, HIV-1 genetics, HIV-1 isolation & purification, Neural Networks, Computer
- Abstract
HIV infection is for the most part a chronic and asymptomatic disease. To properly monitor the health status of infected individuals it is important to use host and viral surrogate markers as well as pharmacokinetic parameters. Disease progression, assessment of the antiviral potency of the drugs and response to therapy can only be monitored by repetitive measures of viral and host parameters. To prevent the emergence of antiviral drug-resistance, long term side effects and to decide on the appropriate treatment choices, a comprehensive assessment of all contributing factors, medical and non-medical, is necessary. However, the relationship between treatment outcomes with disease markers and other contributing factors is not simple. To date, a model that accurately predicts the likelihood of disease progression or treatment failure in HIV infected patients does not exist. Extending our previous work in this area, we developed temporal Artificial Intelligence models based on Jordan-Elman networks to longitudinally follow viral surrogate markers together with demographics, biochemical and laboratory data to describe the drug-virus-host interactions in over 4000 HIV adult patients. In an international (multi-continent) study of HIV clinical and laboratory data, the profiles of drug-naïve as well as treated patients were evaluated during a 20 year follow-up. Validation of models on a subset of this cohort (n=595) estimated the sensitivity and specificity of treatment success/failure, under different management modalities for individual patients. ROC-curves predicted: virologic success from baseline (ROC=0.871) in drug-naïve previously non-treated patients, switch from virologic success/ failure to failure/success if ever and when (ROC=0.625), switch to virologic success/failure from failure/success within 6 months (ROC=0.722) following a previous switch. This tool may be helpful in the design of longitudinal clinical trials.
- Published
- 2005
34. Assessment of longitudinal changes in HIV-specific effector activity in subjects undergoing untreated primary HIV infection.
- Author
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Alter G, Tsoukas CM, Rouleau D, Côté P, Routy JP, Sékaly RP, and Bernard NF
- Subjects
- Adolescent, Adult, Antiretroviral Therapy, Highly Active, Enzyme-Linked Immunosorbent Assay methods, Female, Genes, MHC Class I immunology, HIV Infections drug therapy, Humans, Interferon-gamma analysis, Male, Middle Aged, Peptides immunology, Viral Load, Antibody Formation immunology, HIV Infections immunology, T-Lymphocytes, Cytotoxic immunology
- Abstract
Background: Despite the failure of HIV-specific cell-mediated immune responses to clear the virus, these cells play a critical role in the control of viral replication throughout HIV infection., Objective: To characterize the natural evolution of the HIV-specific immune response in HIV primary infection (PI)., Methods: Untreated individuals, recruited in HIV PI, were monitored for the evolution of HIV-specific immune responses starting in early HIV disease. Longitudinal analysis of changes in the magnitude and breadth of HIV-specific responses to a panel of MHC class I-restricted peptides was performed using the quantitative interferon-gamma ELISPOT assay., Results: Although immune responses were detected in all individuals at all times tested, the pattern of the immune responses differed significantly from that seen in subjects treated in PI. Untreated PI subjects exhibited dramatic changes with time in the frequency of individual HIV peptide-specific T-cell responses. In contrast HIV-specific immunity was stable in subjects treated in early PI or decreased in intensity and breadth in individuals treated later in PI. In untreated subjects the overall magnitude of HIV-specific reactivity persisted over at least 12 months whereas the number of peptides recognized declined., Conclusion: Given that a significant relationship existed between the magnitude of the HIV-specific response and viral load, it is likely that these effector cell expansions and contractions are driven by changes in antigen load.
- Published
- 2004
- Full Text
- View/download PDF
35. A density functional study of the hydrogen-bond network within the HIV-1 protease catalytic site cleft.
- Author
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Sirois S, Proynov EI, Truchon JF, Tsoukas CM, and Salahub DR
- Subjects
- Catalytic Domain, Hydrogen Bonding, Molecular Structure, Thermodynamics, Amino Acids chemistry, HIV Protease chemistry, Models, Molecular, Protein Conformation
- Abstract
The relative energy between two different protonation sites of the Asp25' catalytic site residue is computed and analyzed for various HIV-1 Protease/inhibitor complexes and compared to the wild-type structure. By comparing calculations of negatively charged fragments of gradually increasing size up to 105 atoms we show that correct modeling of the HIV-1 Protease active site requires much larger models than the commonly used acetic acid/acetate moieties. The energy difference between the two proposed protonation sites decreases as the size of the system increases and tends to converge only when the entire catalytic triad of both monomers is taken into account. The importance of the Gly27 backbone amine groups in the stabilization of the negative charge within the catalytic site cleft is revealed. Comparison of the wild-type structure with the structures from various Pr/drug complexes indicates that the HIV-1 protease has a particular catalytic site flexibility., (Copyright 2003 Wiley Periodicals, Inc.)
- Published
- 2003
- Full Text
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36. Longitudinal assessment of changes in HIV-specific effector activity in HIV-infected patients starting highly active antiretroviral therapy in primary infection.
- Author
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Alter G, Hatzakis G, Tsoukas CM, Pelley K, Rouleau D, LeBlanc R, Baril JG, Dion H, Lefebvre E, Thomas R, Côté P, Lapointe N, Routy JP, Sékaly RP, Conway B, and Bernard NF
- Subjects
- Adult, Age Factors, Amino Acid Sequence, CD4-CD8 Ratio, CD4-Positive T-Lymphocytes drug effects, CD4-Positive T-Lymphocytes immunology, CD4-Positive T-Lymphocytes metabolism, CD4-Positive T-Lymphocytes virology, CD8-Positive T-Lymphocytes drug effects, CD8-Positive T-Lymphocytes immunology, CD8-Positive T-Lymphocytes metabolism, CD8-Positive T-Lymphocytes virology, Cell Line, Transformed, Female, HIV Infections virology, Humans, Interferon-gamma metabolism, Longitudinal Studies, Male, Middle Aged, Molecular Sequence Data, Retrospective Studies, Viral Load, Antiretroviral Therapy, Highly Active, HIV Infections drug therapy, HIV Infections immunology, HIV-1 immunology
- Abstract
Both the magnitude and breadth of HIV-specific immunity were evaluated longitudinally on samples collected from six subjects starting highly active antiretroviral therapy (HAART) preseroconversion (group 1), 11 recently infected subjects starting HAART postseroconversion (group 2), five subjects starting HAART in the second half of the first year of infection (group 3), and six persons starting treatment in the chronic phase of infection (group 4). HIV-specific immunity was measured by IFN-gamma ELISPOT, detecting the frequency of cells responding to a panel of HLA-restricted HIV-1 peptides. Intracellular cytokine staining was used to detect the frequency of HIV-1 Gag p55-specific CD4(+) and CD8(+) T cells in a subset of participants. The magnitude and breadth of HIV-specific responses persisted in all group 1 subjects and in 5 of 11 (45%) group 2 subjects. Both of these parameters declined in 6 of 11 (55%) group 2 and in all group 3 and 4 individuals. All persons who maintained detectable numbers of HIV-1 Gag p55-specific CD4(+) and CD8(+) T cells after starting HAART preserved the intensity and breadth of their HIV-specific effector response. Our results show that HIV-specific immunity can be preserved even if HAART is initiated beyond the acute phase of infection.
- Published
- 2003
- Full Text
- View/download PDF
37. Allele frequency of three functionally active polymorphisms of the MDR-1 gene in high-risk HIV-negative and HIV-positive Caucasians.
- Author
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Ifergan I, Bernard NF, Bruneau J, Alary M, Tsoukas CM, and Roger M
- Subjects
- Humans, Polymorphism, Genetic, Prospective Studies, Gene Frequency, Genes, MDR, Genetic Predisposition to Disease, HIV Infections genetics, HIV-1
- Abstract
Recent data suggest that MDR-1 expression may affect HIV-1 infectivity by modulating the immune response and its cellular permissiveness. We investigated whether three functional MDR-1 polymorphims (T-129C, G2677T/A, C3435T) were associated with the risk of infection in 137 Caucasians highly exposed to HIV (70 infected and 67 uninfected). There was no difference in allelic frequencies for each MDR-1 polymorphic site among both groups. This finding suggests that P-glycoprotein expression does not influence HIV-1 infection per se.
- Published
- 2002
- Full Text
- View/download PDF
38. Human immunodeficiency virus (HIV)-specific effector CD8 T cell activity in patients with primary HIV infection.
- Author
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Alter G, Merchant A, Tsoukas CM, Rouleau D, LeBlanc RP, Côté P, Baril JG, Thomas R, Nguyen VK, Sékaly RP, Routy JP, and Bernard NF
- Subjects
- AIDS Vaccines immunology, Adult, Amino Acid Sequence, CD4 Lymphocyte Count, HLA-A Antigens analysis, Humans, Male, Middle Aged, Molecular Sequence Data, CD8-Positive T-Lymphocytes immunology, HIV immunology, HIV Infections immunology
- Abstract
The interferon-gamma ELISPOT assay was used to assess and compare the magnitude and breadth of human immunodeficiency virus (HIV)-specific CD8 T cell responses in treatment-naive subjects during the first year of HIV primary infection and during the chronic phase of infection. Twenty-five subjects tested within a year of exposure to HIV resulting in seroconversion and 20 subjects with chronic infection were screened for HIV peptide-specific activity by stimulating peripheral blood mononuclear cells with a panel of 5-21 HLA class I-restricted HIV peptides (mean, 11.2 +/- 3.5 HIV peptides). There was a significant correlation between the magnitude and breadth of HIV-specific effector responses and time elapsed from exposure (r=0.63 for magnitude vs. time and r=0.64 for breadth vs. time; P<.02, paired t test). Maximal breadth of the HIV gene product reactivity was achieved within 2 months of exposure for Nef-specific responses and by 4 months of exposure for responses directed to Env, Gag, and reverse transcriptase.
- Published
- 2002
- Full Text
- View/download PDF
39. Neural networks morbidity and mortality modeling during loss of HIV T-cell homeostasis.
- Author
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Hatzakis GE and Tsoukas CM
- Subjects
- Biomarkers, CD4 Lymphocyte Count, HIV Seropositivity immunology, HIV-1 genetics, Homeostasis, Humans, Predictive Value of Tests, Proportional Hazards Models, RNA, Viral, ROC Curve, Survival Analysis, HIV Seropositivity mortality, HIV-1 immunology, Neural Networks, Computer, T-Lymphocytes physiology
- Abstract
Despite the proven clinical benefits of HAART, mortality may still occur; particularly in those with less than 50 CD4+ cells/mL and, in some cases, with a viral burden below detectable plasma levels of HIV-1 RNA. Multiple factors may predict mortality including initial response to therapy, viral factors and host immune parameters. Due to the complexity of this problem, we developed Artificial Intelligence based tools/Neural Network (NN) to optimally evaluate outcomes of therapy and predict morbidity and mortality. To further validate the accuracy of these tools, we challenged their performance with that of Cox regression modeling (RM). Our study population involved 116 HIV+ individuals who consistently maintained CD4+ count < 50 cells/mL for over 6 months. All patients were treated with antiretrovirals. To assess clinical outcomes, we developed a feedforward back-propagation Neural Network. We then compared the performance of this network to a Cox regression model. The Neural Network outscored the Cox regression model in the ROC curve areas: 0.888 vs 0.760 (HIV+ first Seropositivity to AIDS), 0.901 vs 0.758 (HIV+ first Seropositivity to Last Assessment incl. death) and 0.832 vs 0.799 (AIDS to Last Assessment incl. death), for the NN & Cox, respectively. In patients with a history of AIDS defining events and with severe T-Cell depletion, mortality occurs despite therapy. Although Neural Networks and Cox modeling were successful in predicting mortality, the Neural Network was superior in assessing risk in this population.
- Published
- 2002
40. Improvement of HIV-specific immunity in HIV-infected twins treated with highly active antiretroviral therapy, interleukin 2, and syngeneic adoptively transferred cells.
- Author
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Tsoukas CM, Turner HM, Hatzakis GE, Blake GP, Goodhew JE, Kilby DL, Kovacs CM, Luetkehoelter JR, Routy JP, Walmsley SL, and Bernard NF
- Subjects
- Adult, CD8-Positive T-Lymphocytes immunology, Combined Modality Therapy, Diseases in Twins, Follow-Up Studies, HIV Infections blood, HIV Seronegativity immunology, HIV Seropositivity blood, HIV Seropositivity drug therapy, HIV Seropositivity immunology, Humans, Immunoassay methods, Interferon-gamma metabolism, Lymphocyte Count, Male, Middle Aged, Pilot Projects, Twins, Monozygotic, Viral Load, Antiretroviral Therapy, Highly Active, CD4-Positive T-Lymphocytes immunology, HIV Infections immunology, HIV Infections therapy, Immunotherapy, Adoptive, Interleukin-2 therapeutic use
- Abstract
Five HIV-seropositive twins were treated with HAART and given cycles of treatment consisting of adoptive cellular therapy from their HIV-seronegative identical twins followed by a 5-day course of intravenous IL-2. Changes in absolute and percent CD4(+) and CD8(+) cell count were monitored and compared with changes in these parameters occurring in seven age-, sex-, and disease stage-matched HIV-infected patients treated with HAART alone. Increase in the magnitude and breadth of HIV-specific immune responses was monitored in three twin subjects who received multiple treatment cycles. Absolute and percent CD4(+) cell counts rose dramatically and to significantly higher levels in the recipient twins than in control subjects treated with HAART only. The subjects who received multiple cycles of treatment developed new and increased levels of HIV-specific activated and memory cytotoxic T lymphocyte responses, and interferon gamma-secreting effector cells. Treatment consisting of HAART, adoptive cellular therapy, and IL-2 was superior to treatment with HAART alone for improving absolute and percent CD4(+) cell counts and inducing new, or increasing the magnitude of, HIV-specific immune responses in HIV infected patients.
- Published
- 2001
- Full Text
- View/download PDF
41. The natural history of leukocyturia associated with indinavir treatment in HIV+ individuals.
- Author
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Gagnon RF, Tecimer SN, Watters AK, Hatzakis GE, and Tsoukas CM
- Subjects
- Adult, Crystallization, Drug Therapy, Combination, Female, HIV Protease Inhibitors administration & dosage, Humans, Indinavir administration & dosage, Leukocytosis urine, Male, Middle Aged, Prospective Studies, Regression Analysis, Time Factors, HIV Protease Inhibitors adverse effects, HIV Seropositivity drug therapy, HIV Seropositivity urine, HIV-1 immunology, Indinavir adverse effects, Leukocytes drug effects, Leukocytosis chemically induced, Urine cytology
- Abstract
Urinary complications observed during indinavir treatment of HIV disease are often attributed to indinavir crystalluria. In a prospective study of urinalysis during the first year of indinavir therapy, 5 of 54 asymptomatic HIV+ individuals presented severe leukocyturia (> or =100 cells/HPF) usually accompanying indinavir crystalluria. The clinical course of these 5 individuals, successfully treated for HIV and monitored for an second follow-up year, suggests that recurrence of severe leukocyturia may be an indicator of renal damage, likely tubulointerstitial disease caused by indinavir crystalluria. This is in contrast to the remaining 49 subjects, including those presenting mild leukocyturia, who did not demonstrate any evidence of renal disease. Regular urinalysis is therefore recommended in the clinical management of indinavir-treated individuals to detect early renal damage secondary to indinavir crystalluria and to prevent further renal impairment., (Copyright 2000 S. Karger AG, Basel)
- Published
- 2000
- Full Text
- View/download PDF
42. Prospective study of urinalysis abnormalities in HIV-positive individuals treated with indinavir.
- Author
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Gagnon RF, Tecimer SN, Watters AK, and Tsoukas CM
- Subjects
- Adult, Aged, Cohort Studies, Crystallization, Female, HIV Protease Inhibitors chemistry, HIV Protease Inhibitors urine, Humans, Hydrogen-Ion Concentration, Indinavir chemistry, Indinavir urine, Leukocyte Count, Male, Middle Aged, Nephelometry and Turbidimetry, Prospective Studies, Specific Gravity, Urinalysis, HIV Protease Inhibitors adverse effects, HIV Seropositivity drug therapy, HIV Seropositivity urine, Indinavir adverse effects
- Abstract
Indinavir is a potent protease inhibitor widely used in combination with reverse-transcriptase inhibitors to treat human immunodeficiency virus (HIV) disease. Individuals treated with indinavir are prone to develop urinary complications, including renal colic, renal calculi, lower urinary tract symptoms, and indinavir crystalluria. Although renal stones secondary to indinavir have been described and characterized, little is known about the onset, frequency, and significance of the crystalluria. To document the longitudinal characteristics of indinavir crystalluria and associated urine abnormalities, 54 asymptomatic indinavir-naive HIV-positive individuals had urinalysis testing initially weekly and then monthly during the first year of indinavir treatment. Six hundred eight urinalyses were performed (11 +/- 2 urinalysis/subject), including 579 microscopy examinations performed by a nephrologist (10 +/- 2 examinations/subject). Baseline urinalysis results were essentially normal. After the start of treatment, indinavir crystalluria was frequently observed (67% of subjects). After the first 2 weeks, indinavir crystalluria remained constant at a frequency of approximately 25% of urine sediments examined at each test point. Other urine abnormalities, principally leukocytes (>/=10/high-power field) and casts, were observed in 39% of subjects. These abnormalities were more severe in five subjects, with concomitant increasing serum creatinine levels in three of them. Additional urine findings include the predominance of low pH (=5. 5 in 72% of urinalyses) and high specific gravity (>/=1.025 in 66% of urinalyses). In conclusion, abnormal urinalysis results were noted frequently during the first year of treatment with indinavir. The main findings were the high proportion of subjects with crystalluria and the relatively high frequency of crystalluria observed consistently throughout. These findings may occasionally be associated with other urine abnormalities, presumably secondary to indinavir crystalluria.
- Published
- 2000
- Full Text
- View/download PDF
43. Genotype and phenotype of cytochrome P450 2D6 in human immunodeficiency virus-positive patients and patients with acquired immunodeficiency syndrome.
- Author
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O'Neil WM, Gilfix BM, Markoglou N, Di Girolamo A, Tsoukas CM, and Wainer IW
- Subjects
- Adult, Aged, CD4 Lymphocyte Count, Cross-Sectional Studies, Female, Genotype, Humans, Lipopolysaccharides pharmacology, Longitudinal Studies, Male, Middle Aged, Phenotype, Acquired Immunodeficiency Syndrome enzymology, Cytochrome P-450 CYP2D6 genetics, HIV Seropositivity enzymology
- Abstract
Objective: To examine the distribution of the cytochrome P450 (CYP) CYP2D6 phenotype and its relation to genotype, concomitant medication, and disease state in human immunodeficiency virus (HIV)-positive patients., Design: A cross sectional study with a longitudinal component compared individual genotypes for CYP2D6 to the CYP2D6 phenotype., Methods: Sixty-one predominately male Caucasian, HIV-positive patients were recruited and CYP2D6 genotypes [extensive metabolizer (EM) or poor metabolizer (PM)] determined by polymerase chain reaction (PCR)-based amplification, followed by restriction fragment-length analysis. The patients were also phenotyped using dextromethorphan (DM) to determine their respective enzyme activity and assigned either a CYP2D6 EM or PM phenotype. Complete medical and treatment histories were compiled. A total of 44 patients were tested longitudinally., Results: Fifty-nine patients (97%) possessed an EM genotype, consistent with previously observed distributions in demographically similar populations. In healthy seronegative populations, genotype and phenotype have been shown to be essentially interchangeable measures of CYP2D6 activity. In this cohort, 2 of the 59 patients with an EM genotype expressed a PM phenotype. In addition, 4 EM patients were less extensive DM metabolizers than any of the patients receiving medication known to inhibit CYP2D6. This apparent shift toward the PM phenotype from the EM genotype was associated with the presence of active illness., Conclusion: Changes may occur in HIV-positive patients such that their CYP2D6 activity approaches that of PMs, despite having an EM genotype. Neither active disease nor drug interactions alone explain the shift.
- Published
- 2000
- Full Text
- View/download PDF
44. Symptomatic and health status outcomes in the Canadian randomized MAC treatment trial (CTN010). Canadian HIV Trials Network Protocol 010 Study Group.
- Author
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Singer J, Thorne A, Khorasheh S, Raboud JM, Wu AW, Salit I, Tsoukas CM, Lemieux C, and Shafran SD
- Subjects
- AIDS-Related Opportunistic Infections physiopathology, Adolescent, Adult, Bacteremia physiopathology, Canada, Ciprofloxacin therapeutic use, Clarithromycin therapeutic use, Clofazimine therapeutic use, Drug Therapy, Combination, Ethambutol therapeutic use, Health Status, Humans, Mycobacterium avium-intracellulare Infection physiopathology, Outcome and Process Assessment, Health Care, Rifabutin therapeutic use, Rifampin therapeutic use, Treatment Outcome, AIDS-Related Opportunistic Infections drug therapy, Antitubercular Agents therapeutic use, Bacteremia drug therapy, Mycobacterium avium-intracellulare Infection drug therapy
- Abstract
Our objective was to compare the effect of 2 regimens for treatment of Mycobacterium avium complex (MAC) bacteraemia in an HIV-positive population on symptoms and health status outcomes using a substudy of an open-label randomized controlled trial. The study was conducted in 24 hospital-based human immunodeficiency virus (HIV) clinics in 16 Canadian cities. Patients had HIV infection and MAC bacteraemia and were given either rifampin 600 mg, ethambutol 15 mg/kg daily, clofazimine 100 mg daily and ciprofloxacin 750 mg twice daily (4-drug arm) or rifabutin 600 mg daily (amended to 300 mg daily in mid-trial), ethambutol 15 mg/kg daily and clarithromycin 1000 mg twice daily (3-drug arm). The primary health status outcome was the change on the 8-item symptom subscale of the Medical Outcome Study (MOS)-HIV Health Survey adapted for MAC. Changes on other MOS-HIV subscales and on the Karnofsky score were also evaluated. Patients on the 3-drug arm had better outcomes on the MOS-HIV symptom subscale at 16 weeks (P=0.06), with statistically significant differences restricted to night sweats and fever and chills (P < 0.001). The proportion of patients improving on the symptom subscale relative to baseline was 55% on the 3-drug arm and 40% on the 4-drug arm. Patients on the 3-drug arm also had better Karnofsky score at 16 weeks (P < 0.001) and better outcomes on the social function, mental health, energy/fatigue, health distress and cognitive function subscales of the MOS-HIV. The 3-drug arm is superior to the 4-drug arm in terms of impact on MAC-associated symptoms, functional status and other aspects of health status.
- Published
- 2000
- Full Text
- View/download PDF
45. Glucuronidation and sulphation of paracetamol in HIV-positive patients and patients with AIDS.
- Author
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O'Neil WM, Pezzullo JC, Di Girolamo A, Tsoukas CM, and Wainer IW
- Subjects
- Adult, Cross-Sectional Studies, Disease Progression, Female, Glucuronides metabolism, Glucuronosyltransferase, Humans, Longitudinal Studies, Male, Middle Aged, Nutritional Status, Sulfates metabolism, Sulfotransferases, Acetaminophen metabolism, Acquired Immunodeficiency Syndrome metabolism, HIV Infections metabolism
- Abstract
Aims: To gauge the effect of disease state and disease progression on the glucuronidation and sulphation of paracetamol (APAP) among HIV-positive patients and patients with AIDS., Methods: The extent of APAP glucuronidation and APAP sulphation was assessed using a spot urine sample collected 4 h after the oral administration of 500 mg of APAP to 108 patients with AIDS or HIV infection. The molar concentrations of APAP and its glucuronide and sulphate metabolites were determined using a validated h.p.l.c. method and glucuronidation and sulphation indices were constructed using APAP metabolite/APAP molar concentration ratios., Results: No effect of disease state, AIDS vs asymptomatic HIV positive vs control, on APAP glucuronidation or sulphation was observed. The patient population was studied over time and disease progression also did not significantly alter the calculated glucuronidation and sulphation indices. The effect of the concomitant administration of other therapeutic agents was assessed and in the cross sectional portion of the study dapsone appeared to significantly decrease APAP sulphation as did lamivudine. In the longitudinal portion of the study the latter effect was not observed but zidovudine was seen to increase APAP glucuronidation. The data also indicates that APAP glucuronidation may be reduced in patients who are >10% below their ideal body weight.
- Published
- 1999
- Full Text
- View/download PDF
46. Hepatitis C virus is related to progressive liver disease in human immunodeficiency virus-positive hemophiliacs and should be treated as an opportunistic infection.
- Author
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Lesens O, Deschênes M, Steben M, Bélanger G, and Tsoukas CM
- Subjects
- Adolescent, Adult, Disease Progression, HIV Infections virology, Hepatitis C virology, Humans, Liver Diseases pathology, Prospective Studies, AIDS-Related Opportunistic Infections virology, HIV Infections complications, Hemophilia A complications, Hepacivirus, Hepatitis C complications, Liver Diseases virology
- Abstract
The hypothesis was investigated that hepatitis C virus (HCV) infection behaves like an opportunistic infection in which progressive liver disease (PLD) is the principal manifestation. PLD in 81 hemophiliacs coinfected with HCV and human immunodeficiency virus (HIV) was compared with 53 HIV-seronegative HCV-infected hemophiliacs. Progression to AIDS and death in 22 HCV/HIV-coinfected hemophiliacs with PLD was also compared with 59 coinfected hemophiliacs who did not develop PLD. The risk of PLD occurrence associated with an HIV-positive status was 7.4 (95% confidence interval [CI], 2.2-25.5; Cox model). In the coinfected group, the risk of PLD occurrence was higher in subjects with severe AIDS-defining immunodeficiency than in those without (odds ratio, 3. 6; 95% CI, 1.3-10). Persons with PLD also had a faster progression to AIDS (P=.03, log rank test) than those without PLD. Thus, as with other chronic resident human viruses, HCV should be considered another opportunistic pathogen in HIV disease.
- Published
- 1999
- Full Text
- View/download PDF
47. Human immunodeficiency virus (HIV)-specific cytotoxic T lymphocyte activity in HIV-exposed seronegative persons.
- Author
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Bernard NF, Yannakis CM, Lee JS, and Tsoukas CM
- Subjects
- Adult, Cytotoxicity, Immunologic, Female, Genotype, HIV genetics, Histocompatibility Testing, Humans, Immunity, Innate, Major Histocompatibility Complex, Male, Middle Aged, Needlestick Injuries, Sexual Behavior, HIV immunology, HIV Seronegativity genetics, HIV Seronegativity immunology, Receptors, CCR5 genetics, T-Lymphocytes, Cytotoxic immunology
- Abstract
Repeated exposure to human immunodeficiency virus (HIV) does not always result in seroconversion. Understanding the conditions that permit or protect against progressive infection with HIV is important for vaccine development. Nineteen subjects at risk for HIV infection were CCR-5 genotyped and screened for virus-specific memory cytotoxic T lymphocytes (CTL). None had the Delta32CCR-5/Delta32CCR-5 genotype associated with HIV resistance. HIV-specific CTL were detected in 7 (41.1%) of 17 exposed uninfected subjects versus 0 of 14 seronegative subjects with no HIV risk factors (P=.006, chi2 test). Recognition of virus by CTL in exposed uninfected subjects was major histocompatibility complex class I-restricted and multispecific, and specificity could change with time. Activity could persist up to 34 months after the last virus exposure. The presence of HIV-specific CTL in a greater proportion of seronegative HIV-exposed versus unexposed subjects supports the notion that in some cases, virus exposure induces HIV immunity without seroconversion or disease progression.
- Published
- 1999
- Full Text
- View/download PDF
48. HIV-specific cytotoxic T-lymphocyte activity in immunologically normal HIV-infected persons.
- Author
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Bernard NF, Pederson K, Chung F, Ouellet L, Wainberg MA, and Tsoukas CM
- Subjects
- Adult, CD4-CD8 Ratio, Cells, Cultured, Cohort Studies, Female, HIV immunology, HIV isolation & purification, Humans, Leukocytes, Mononuclear, Male, Middle Aged, RNA, Viral blood, Retroviridae Proteins immunology, Risk Factors, Viral Load, HIV Infections immunology, T-Lymphocyte Subsets immunology, T-Lymphocytes, Cytotoxic immunology
- Abstract
Background: CD8+ T-cell counts usually increase soon after infection with HIV, whereas CD4+ cell counts decrease. The result of these changes in T-cell subpopulation subsets in most HIV-infected subjects is inversion of the CD4 : CD8 ratio from greater than 1.0 typical of uninfected persons to less than 1.0 after infection., Subjects: Six HIV-infected individuals were identified in whom the CD4 : CD8 ratio remained normal throughout follow-up (4.0-11.25 years). They all maintained levels of CD4+ cells above 500 x 10(6)/l and had never received antiretroviral therapy. Because HIV-specific cytotoxic T lymphocytes (CTL) have been implicated in control of HIV during the asymptomatic phase of disease, we screened these individuals for the presence of HIV-specific CTL activity., Methods: CTL activity was assessed in freshly isolated peripheral blood mononuclear cells (PBMC) and in phytohaemagglutinin-stimulated interleukin-2 expanded cell lines established from PBMC. Cytotoxicity to HIV-1 env, gag, pol and nef gene products was surveyed in a 4 h 51Cr-release assay using autologous Epstein-Barr virus (EBV) transformed B cells infected with vaccinia constructs expressing each of these HIV genes. The immunodominant CTL epitope and MHC class I antigen restriction specificity of HIV-specific CTL was mapped when present. Plasma viral load was assessed by branched DNA assay. Attempts were made to isolate virus from these individuals by the PBMC coculture assay., Results: None of the six immunologically normal HIV-infected (INHI) subjects exhibited direct HIV-specific CTL activity in their freshly isolated PBMC compared with 16 (47%) out of 34 HIV disease progressors (P = 0.03, chi2 test) and one out of 10 seronegative subjects. Three of the six INHI subjects had detectable memory HIV-specific precursor CTL (pCTL) activity in in vitro-activated T-cell lines compared with 25 (73.5%) out of 34 HIV-1 disease progressors and in none out of 10 seronegative individuals. All three INHI subjects had Gag-specific pCTL, and none had reverse transcriptase-specific pCTL. Plasma HIV viraemia in all six INHI subjects was below the level of detection by branched DNA assay (< 500 copies/ml). Virus could not be isolated from four of these individuals despite multiple attempts to do so by PBMC coculture assays., Conclusion: Direct HIV-specific CTL activity mediated by activated circulating PBMC was undetectable in six INHI individuals under conditions where it is frequently observed in HIV disease progressors. Despite the absence of cells activated for killing HIV-infected targets in the circulation of these individuals, they appeared able to control their HIV infection by maintaining normal levels of CD4 and CD8 cells and low viral load.
- Published
- 1998
- Full Text
- View/download PDF
49. Activity of the soft gelatin formulation of saquinavir in combination therapy in antiretroviral-naive patients. NV15355 Study Team.
- Author
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Mitsuyasu RT, Skolnik PR, Cohen SR, Conway B, Gill MJ, Jensen PC, Pulvirenti JJ, Slater LN, Schooley RT, Thompson MA, Torres RA, and Tsoukas CM
- Subjects
- Adolescent, Adult, Anti-HIV Agents administration & dosage, CD4 Lymphocyte Count, Chemistry, Pharmaceutical, Consumer Product Safety, Drug Therapy, Combination, Female, HIV Infections immunology, HIV Infections virology, HIV Protease Inhibitors administration & dosage, Humans, Male, Middle Aged, RNA, Viral blood, Saquinavir administration & dosage, Anti-HIV Agents therapeutic use, Gelatin, HIV Infections drug therapy, HIV Protease Inhibitors therapeutic use, HIV-1 genetics, Saquinavir therapeutic use
- Abstract
Objective: A Phase II, open-label, randomized, parallel-arm, multicentre trial to compare the antiviral activity and safety of two formulations of saquinavir (SQV), soft gelatin (SQV-SGC) and hard gelatin (SQV-HGC) capsules, in combination with two nucleoside reverse transcriptase inhibitors (NRTI), in antiretroviral-naive, HIV-1-infected individuals., Participants: A total of 171 people of > or = 13 years, with plasma HIV-1 RNA levels > or = 5000 copies/ml, who had received no protease inhibitor therapy, < or = 4 weeks NRTI therapy and no antiretroviral treatment within 28 days of screening. Eighty-one people were randomized to the SQV-HGC group and 90 to the SQV-SGC group. A total of 148 patients completed 16 weeks of therapy., Intervention: Therapy for 16 weeks with either SQV-SGC 1200 mg or SQV-HGC 600 mg, both three times a day, in combination with two NRTI., Results: Using an on-treatment analysis, patients taking SQV-SGC had a larger reduction in plasma HIV-1 RNA than those taking SQV-HGC (-2.0 versus -1.6 log10 copies/ml). Eighty per cent of those on SQV-SGC had < 400 copies HIV RNA/ml, compared with 43% in the SQV-HGC group (P = 0.001). A statistically significant difference in the area under the curve (AUC) values between the SQV-SGC and SQV-HGC arms (-1.7 versus -1.5 log10 copies/ml, respectively; P = 0.0054) was observed when withdrawals prior to week 12, major protocol violators and patients with < 75% compliance were excluded from the analysis; however, the difference between the values for the intent-to-treat population was not significant (P = 0.1929). Adverse events (mostly mild) included diarrhoea and nausea., Conclusions: SQV-SGC was generally well tolerated and gave significantly more potent suppression of plasma HIV-1 RNA in antiretroviral-naive patients than SQVHGC.
- Published
- 1998
- Full Text
- View/download PDF
50. Effect of splenectomy on T-cell subsets and plasma HIV viral titers in HIV-infected patients.
- Author
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Bernard NF, Chernoff DN, and Tsoukas CM
- Subjects
- Adult, Disease Progression, Humans, Longitudinal Studies, Lymphocyte Count, Middle Aged, Purpura, Thrombocytopenic, Idiopathic immunology, Purpura, Thrombocytopenic, Idiopathic virology, RNA, Viral blood, Viral Load, HIV isolation & purification, HIV Infections immunology, HIV Infections virology, Splenectomy, T-Lymphocyte Subsets immunology
- Abstract
Objective: In previous studies we have shown that removal of the spleen in HIV-infected people during the asymptomatic phase of disease results in slower time to AIDS and may also result in improved survival. In this paper, we examine whether splenectomy affects lymphocyte counts, T-cell subsets, and HIV plasma viremia in a manner that could explain the clinical benefits associated with this intervention., Methods: 10 HIV-infected patients who underwent splenectomy and 23 HIV-infected controls with idiopathic thrombocytopenia purpura who did not undergo splenectomy were studied. These groups were compared for changes in cell subpopulations and HIV plasma viremia., Results: Splenectomy resulted in increases in absolute lymphocyte numbers with rises in both CD4 and CD8 counts, whereas CD4 and CD8 percentage levels remained unchanged. In controls, absolute and percentage CD4+ T-cell counts declined with time from date of HIV infection. Plasma viremia decreased more than threefold, the limit of biologic variation, after splenectomy in 4 of 9 subjects and in only 1 of 18 controls. The proportion of subjects exhibiting reduced viremia following splenectomy was greater than that in HIV-infected patients that did not undergo splenectomy (chi 2 test, P = .015)., Conclusions: Improved survival and time to AIDS in splenectomized HIV-infected patients is associated with temporary reduction of plasma viremia and increase in absolute CD4 and CD8 counts. These effects could not be attributed to antiretroviral therapy because subjects were either untreated or treated with antiretroviral monotherapy during the observation period. These observations may have importance in the understanding of T-cell dynamics and the potential for splenectomy as an HIV reservoir-debulking procedure.
- Published
- 1998
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