40 results on '"Tschirren J"'
Search Results
2. Quantification of Normal Tissue Mass From Computed Tomography in Systemic Sclerosis-associated Interstitial Lung Disease
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Peterson, S., primary, Newell, J.D., additional, Tschirren, J., additional, Eddy, R.L., additional, Datta, K., additional, and Ryerson, C.J., additional
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- 2024
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3. Automated Deep Learning-based Airway Count Associates With Lung Function in Interstitial Lung Disease
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Mueller, G., primary, Tschirren, J., additional, Huang, X., additional, Peterson, S., additional, Eddy, R.L., additional, Newell, J.D., additional, Thomas, B., additional, Datta, K., additional, and Ryerson, C.J., additional
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- 2024
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4. Microscopic Validation of Deep Learning Based Texture Classification of Idiopathic Pulmonary Fibrosis Patterns Visible on Thoracic Computed Tomography
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Vasilescu, D.M., primary, Ikezoe, K., additional, Peterson, S., additional, Tschirren, J., additional, Hague, C.J., additional, Cooper, J.D., additional, Ryerson, C.J., additional, Hogg, J.C., additional, and Hackett, T.-L., additional
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- 2023
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5. Harmonization of Reconstructed Field of View Improves Accuracy of Lung CT Measurements
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Tschirren, J., primary, Gober, H.J., additional, Waldstein, A.E., additional, Eddy, R.L., additional, Newell, J.D., additional, and Datta, K., additional
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- 2023
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6. Segmentation, Skeletonization, and Branchpoint Matching — A Fully Automated Quantitative Evaluation of Human Intrathoracic Airway Trees
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Tschirren, J., Palágyi, K., Reinhardt, J. M., Hoffman, E. A., Sonka, M., Goos, Gerhard, editor, Hartmanis, Juris, editor, van Leeuwen, Jan, editor, Dohi, Takeyoshi, editor, and Kikinis, Ron, editor
- Published
- 2002
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7. Severe pulmonary hypertension associated with lung disease is characterised by a loss of small pulmonary vessels on quantitative CT
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Alkhanfar, D., Shahin, Y., Alandejani, F., Dwivedi, K., Alabed, S., Johns, C., Lawrie, A., Thompson, A.A.R., Rothman, A.M.K., Tschirren, J., Uthoff, J.M., Hoffman, E., Condliffe, R., Wild, J.M., Kiely, D.G., and Swift, A.J.
- Abstract
Background\ud \ud Pulmonary hypertension (PH) in patients with chronic lung disease (CLD) predicts reduced functional status, clinical worsening and increased mortality, with patients with severe PHCLD (≥35mmHg) having a significantly worse prognosis than mild to moderate PH-CLD (21- 34mmHg). The aim of this cross-sectional study was to assess the association between computed tomography (CT) derived quantitative pulmonary vessel volume, PH severity and disease aetiology in CLD.\ud \ud Methods\ud \ud Treatment naïve patients with CLD who underwent CT pulmonary angiography, lung function testing and right heart catheterisation were identified from the ASPIRE Registry between October 2012 and July 2018. Quantitative assessments of total pulmonary vessel and small pulmonary vessel volume were performed.\ud \ud Results\ud \ud Ninety patients had PH-CLD including 44 associated with COPD/emphysema and 46 with interstitial lung disease. Patients with severe PH-CLD (n=40) had lower small pulmonary vessel volume compared to patients with mild to moderate PH-CLD (n=50). Patients with PH-ILD had significantly reduced small pulmonary blood vessel volume, compared to PHCOPD/emphysema. Higher mortality was identified in patients with lower small pulmonary vessel volume.\ud \ud Conclusion\ud \ud Patients with severe PH-CLD, regardless of aetiology, have lower small pulmonary vessel volume compared to patients with mild-moderate PH-CLD and this is associated with a higher mortality. Whether pulmonary vessel changes quantified by CT are a marker of remodelling of the distal pulmonary vasculature requires further study.
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- 2022
8. Segmentation, Skeletonization, and Branchpoint Matching — A Fully Automated Quantitative Evaluation of Human Intrathoracic Airway Trees
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Tschirren, J., primary, Palágyi, K., additional, Reinhardt, J. M., additional, Hoffman, E. A., additional, and Sonka, M., additional
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- 2002
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9. Quantitative Computed Tomography in Systemic Sclerosis-Associated Interstitial Lung Disease: A Densitometric Assessment of Disease Severity
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Castillo Saldana, D., primary, Coxson, H.O., additional, Hague, C.J., additional, Murphy, D., additional, Kirby, M., additional, Tschirren, J., additional, Sieren, J.P., additional, Newell, J.D., additional, and Ryerson, C.J., additional
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- 2019
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10. Supplementary Material for: A Novel Method of Estimating Small Airway Disease Using Inspiratory-to-Expiratory Computed Tomography
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Kirby, M., Yin, Y., Tschirren, J., Tan, W.C., Leipsic, J., Hague, C.J., Bourbeau, J., Sin, D.D., Hogg, J.C., Coxson, H.O., and For The CanCOLD Collaborative Research Group And The Canadian Respiratory Research Network
- Abstract
Background: Disease accumulates in the small airways without being detected by conventional measurements. Objectives: To quantify small airway disease using a novel computed tomography (CT) inspiratory-to-expiratory approach called the disease probability measure (DPM) and to investigate the association with pulmonary function measurements. Methods: Participants from the population-based CanCOLD study were evaluated using full-inspiration/full-expiration CT and pulmonary function measurements. Full-inspiration and full-expiration CT images were registered, and each voxel was classified as emphysema, gas trapping (GasTrap) related to functional small airway disease, or normal using two classification approaches: parametric response map (PRM) and DPM (VIDA Diagnostics, Inc., Coralville, IA, USA). Results: The participants included never-smokers (n = 135), at risk (n = 97), Global Initiative for Chronic Obstructive Lung Disease I (GOLD I) (n = 140), and GOLD II chronic obstructive pulmonary disease (n = 96). PRMGasTrap and DPMGasTrap measurements were significantly elevated in GOLD II compared to never-smokers (p < 0.01) and at risk (p < 0.01), and for GOLD I compared to at risk (p < 0.05). Gas trapping measurements were significantly elevated in GOLD II compared to GOLD I (p < 0.0001) using the DPM classification only. Overall, DPM classified significantly more voxels as gas trapping than PRM (p < 0.0001); a spatial comparison revealed that the expiratory CT Hounsfield units (HU) for voxels classified as DPMGasTrap but PRMNormal (PRMNormal- DPMGasTrap = -785 ± 72 HU) were significantly reduced compared to voxels classified normal by both approaches (PRMNormal-DPMNormal = -722 ± 89 HU; p < 0.0001). DPM and PRMGasTrap measurements showed similar, significantly associations with forced expiratory volume in 1 s (FEV1) (p < 0.01), FEV1/forced vital capacity (p < 0.0001), residual volume/total lung capacity (p < 0.0001), bronchodilator response (p < 0.0001), and dyspnea (p < 0.05). Conclusion: CT inspiratory-to-expiratory gas trapping measurements are significantly associated with pulmonary function and symptoms. There are quantitative and spatial differences between PRM and DPM classification that need pathological investigation.
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- 2017
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11. Korrelation der interlobären Fissurenintegrität und der Emphysemverteilung bei Patienten mit fortgeschrittener chronisch obstruktiver Lungenerkrankung
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Gompelmann, D, additional, Kontogianni, K, additional, Schuhmann, M, additional, Heußel, CP, additional, Tschirren, J, additional, Eberhardt, R, additional, and Herth, FJF, additional
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- 2017
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12. Extraction of Airways from CT (EXACT'09)
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Lo, P., Ginneken, B. van, Reinhardt, J.M., Tarunashree, Y., Jong, P.A. de, Irving, B., Fetita, C., Ortner, M., Pinho, R., Sijbers, J., Feuerstein, M., Fabijanska, A., Bauer, C., Beichel, R., Mendoza, C.S., Wiemker, R., Lee, J. van der, Reeves, A.P., Born, S., Weinheimer, O., Rikxoort, E.M. van, Tschirren, J., Mori, K., Odry, B., Naidich, D.P., Hartmann, I.J., Hoffman, E.A., Prokop, M., Pedersen, J.H., de Bruijne, M., Lo, P., Ginneken, B. van, Reinhardt, J.M., Tarunashree, Y., Jong, P.A. de, Irving, B., Fetita, C., Ortner, M., Pinho, R., Sijbers, J., Feuerstein, M., Fabijanska, A., Bauer, C., Beichel, R., Mendoza, C.S., Wiemker, R., Lee, J. van der, Reeves, A.P., Born, S., Weinheimer, O., Rikxoort, E.M. van, Tschirren, J., Mori, K., Odry, B., Naidich, D.P., Hartmann, I.J., Hoffman, E.A., Prokop, M., Pedersen, J.H., and de Bruijne, M.
- Abstract
Contains fulltext : 107854.pdf (Publisher’s version ) (Open Access), This paper describes a framework for establishing a reference airway tree segmentation, which was used to quantitatively evaluate fifteen different airway tree extraction algorithms in a standardized manner. Because of the sheer difficulty involved in manually constructing a complete reference standard from scratch, we propose to construct the reference using results from all algorithms that are to be evaluated. We start by subdividing each segmented airway tree into its individual branch segments. Each branch segment is then visually scored by trained observers to determine whether or not it is a correctly segmented part of the airway tree. Finally, the reference airway trees are constructed by taking the union of all correctly extracted branch segments. Fifteen airway tree extraction algorithms from different research groups are evaluated on a diverse set of twenty chest computed tomography ({CT}) scans of subjects ranging from healthy volunteers to patients with severe pathologies, scanned at different sites, with different {CT} scanner brands, models, and scanning protocols. Three performance measures covering different aspects of segmentation quality were computed for all participating algorithms. Results from the evaluation showed that no single algorithm could extract more than an average of 74\% of the total length of all branches in the reference standard, indicating substantial differences between the algorithms. A fusion scheme that obtained superior results is presented, demonstrating that there is complementary information provided by the different algorithms and there is still room for further improvements in airway segmentation algorithms.
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- 2012
13. PULMONARY CT IMAGE ANALYSIS AND COMPUTER AIDED DETECTION
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Sonka, M., primary, Tschirren, J., additional, Ukil, S., additional, Zhang, X., additional, Xu, Y., additional, Reinhardt, J.M., additional, van Beek, E.J., additional, Mclennan, G., additional, and Hoffman, E.A., additional
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- 2007
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14. Matching and anatomical labeling of human airway tree
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Tschirren, J., primary, McLennan, G., additional, Palagyi, K., additional, Hoffman, E.A., additional, and Sonka, M., additional
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- 2005
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15. Segmentation and Quantitative Analysis of Intrathoracic Airway Trees from Computed Tomography Images
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Tschirren, J., primary
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- 2005
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16. Intrathoracic airway trees: segmentation and airway morphology analysis from low-dose CT scans
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Tschirren, J., primary, Hoffman, E.A., additional, McLennan, G., additional, and Sonka, M., additional
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- 2005
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17. Automated analysis of Doppler ultrasound velocity flow diagrams
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Tschirren, J., primary, Lauer, R.M., additional, and Sonka, M., additional
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- 2001
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18. Assessment of intrathoracic airway trees: Methods and in vivo validation
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Palágyi, K., Tschirren, J., Eric Hoffman, and Sonka, M.
19. Automated nomenclature labeling of the bronchial tree in 3D-CT Lung images
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Kitaoka, H., Park, Y., Tschirren, J., Joseph Reinhardt, Sonka, M., Mclennan, G., and Hoffman, E. A.
20. Segmentation, Skeletonization, and Branchpoint matching – A fully automated quantitative evaluation of Human Intrathoracic Airway Trees
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Tschirren, J., Palágyi, K., Joseph Reinhardt, Hoffman, E. A., and Sonka, M.
21. Quantitative CT Evaluation of Small Pulmonary Vessels Has Functional and Prognostic Value in Pulmonary Hypertension.
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Shahin Y, Alabed S, Alkhanfar D, Tschirren J, Rothman AMK, Condliffe R, Wild JM, Kiely DG, and Swift AJ
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- Aged, Female, Humans, Computed Tomography Angiography, Lung, Prognosis, Pulmonary Artery diagnostic imaging, Retrospective Studies, Heart Diseases, Hypertension, Pulmonary, Pulmonary Arterial Hypertension
- Abstract
Background The in vivo relationship between peel pulmonary vessels, small pulmonary vessels, and pulmonary hypertension (PH) is not fully understood. Purpose To quantitatively assess peel pulmonary vessel volumes (PPVVs) and small pulmonary vessel volumes (SPVVs) as estimated from CT pulmonary angiography (CTPA) in different subtypes of PH compared with controls, their relationship to pulmonary function and right heart catheter metrics, and their prognostic value. Materials and Methods In this retrospective single-center study performed from January 2008 to February 2018, quantitative CTPA analysis of total SPVV (TSPVV) (0.4- to 2-mm vessel diameter) and PPVV (within 15, 30, and 45 mm from the lung surface) was performed. Results A total of 1823 patients (mean age, 69 years ± 13 [SD]; 1192 women [65%]) were retrospectively analyzed; 1593 patients with PH (mean pulmonary arterial pressure [mPAP], 43 mmHg ± 13 [SD]) were compared with 230 patient controls (mPAP, 19 mm Hg ± 3). The mean vessel volumes in pulmonary peels at 15-, 30-, and 45-mm depths were higher in pulmonary arterial hypertension (PAH) and PH secondary to lung disease compared with chronic thromboembolic PH (45-mm peel, mean difference: 6.4 mL [95% CI: 1, 11] [ P < .001] vs 6.8 mL [95% CI: 1, 12] [ P = .01]). Mean small vessel volumes at a diameter of less than 2 mm were lower in PAH and PH associated with left heart disease compared with controls (1.6-mm vessels, mean difference: -4.3 mL [95% CI: -8, -0.1] [ P = .03] vs -6.8 mL [95% CI: -11, -2] [ P < .001]). In patients with PH, the most significant positive correlation was noted with forced vital capacity percentage predicted ( r = 0.30-0.40 [all P < .001] for TSPVVs and r = 0.21-0.25 [all P < .001] for PPVVs). Conclusion The volume of pulmonary small vessels is reduced in pulmonary arterial hypertension and pulmonary hypertension (PH) associated with left heart disease, with similar volume of peel vessels compared with controls. For chronic thromboembolic PH, the volume of peel vessels is reduced. In PH, small pulmonary vessel volume is associated with pulmonary function tests. Clinical trial registration no. NCT02565030 Published under a CC BY 4.0 license Online supplemental material is available for this article.
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- 2022
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22. Severe pulmonary hypertension associated with lung disease is characterised by a loss of small pulmonary vessels on quantitative computed tomography.
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Alkhanfar D, Shahin Y, Alandejani F, Dwivedi K, Alabed S, Johns C, Lawrie A, Thompson AAR, Rothman AMK, Tschirren J, Uthoff JM, Hoffman E, Condliffe R, Wild JM, Kiely DG, and Swift AJ
- Abstract
Background: Pulmonary hypertension (PH) in patients with chronic lung disease (CLD) predicts reduced functional status, clinical worsening and increased mortality, with patients with severe PH-CLD (≥35 mmHg) having a significantly worse prognosis than mild to moderate PH-CLD (21-34 mmHg). The aim of this cross-sectional study was to assess the association between computed tomography (CT)-derived quantitative pulmonary vessel volume, PH severity and disease aetiology in CLD., Methods: Treatment-naïve patients with CLD who underwent CT pulmonary angiography, lung function testing and right heart catheterisation were identified from the ASPIRE registry between October 2012 and July 2018. Quantitative assessments of total pulmonary vessel and small pulmonary vessel volume were performed., Results: 90 patients had PH-CLD including 44 associated with COPD/emphysema and 46 with interstitial lung disease (ILD). Patients with severe PH-CLD (n=40) had lower small pulmonary vessel volume compared to patients with mild to moderate PH-CLD (n=50). Patients with PH-ILD had significantly reduced small pulmonary blood vessel volume, compared to PH-COPD/emphysema. Higher mortality was identified in patients with lower small pulmonary vessel volume., Conclusion: Patients with severe PH-CLD, regardless of aetiology, have lower small pulmonary vessel volume compared to patients with mild-moderate PH-CLD, and this is associated with a higher mortality. Whether pulmonary vessel changes quantified by CT are a marker of remodelling of the distal pulmonary vasculature requires further study., Competing Interests: Conflict of interest: D. Alkhanfar has nothing to disclose. Conflict of interest: Y. Shahin has nothing to disclose. Conflict of interest: F. Alandejani has nothing to disclose. Conflict of interest: K. Dwivedi has nothing to disclose. Conflict of interest: S. Alabed has nothing to disclose. Conflict of interest: C. Johns has nothing to disclose. Conflict of interest: A. Lawrie has nothing to disclose. Conflict of interest: A.A.R. Thompson has nothing to disclose. Conflict of interest: A.M.K. Rothman has nothing to disclose. Conflict of interest: J. Tschirren has nothing to disclose. Conflict of interest: J.M. Uthoff has nothing to disclose. Conflict of interest: E. Hoffman has nothing to disclose. Conflict of interest: R. Condliffe has nothing to disclose. Conflict of interest: J.M. Wild has nothing to disclose. Conflict of interest: D.G. Kiely has nothing to disclose. Conflict of interest: A.J. Swift has nothing to disclose., (Copyright ©The authors 2022.)
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- 2022
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23. Subclinical Pulmonary Congestion and Abnormal Hemodynamics in Heart Failure With Preserved Ejection Fraction.
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Jain CC, Tschirren J, Reddy YNV, Melenovsky V, Redfield M, and Borlaug BA
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- Artificial Intelligence, Exercise Test, Hemodynamics, Humans, Lung diagnostic imaging, Predictive Value of Tests, Stroke Volume, Heart Failure complications, Heart Failure diagnostic imaging, Pulmonary Edema diagnostic imaging, Pulmonary Edema etiology
- Abstract
Objectives: The authors hypothesized that quantitative computed tomography (QCT) imaging would reveal subclinical increases in lung congestion in patients with heart failure and preserved ejection fraction (HFpEF) and that this would be related to pulmonary vascular hemodynamic abnormalities., Background: Gross evidence of lung congestion on physical examination, laboratory tests, and radiography is typically absent among compensated ambulatory patients with HFpEF. However, pulmonary gas transfer abnormalities are commonly observed and associated with poor outcomes., Methods: Patients referred for invasive hemodynamic exercise testing who had undergone chest computed tomography imaging within 1 month were identified (N = 137). A novel artificial intelligence QCT algorithm was used to measure pulmonary fluid content., Results: Compared with control subjects with noncardiac dyspnea, patients with HFpEF displayed increased mean lung density (-758 HU [-793, -709 HU] vs -787 HU [-828, -747 HU]; P = 0.002) and a higher ratio of extravascular lung water to total lung volume (EVLWV/TLV) (1.25 [0.80, 1.76] vs 0.66 [0.01, 1.03]; P < 0.0001) by QCT imaging, indicating greater lung congestion. EVLWV/TLV was directly correlated with pulmonary vascular pressures at rest, with stronger correlations observed during exercise. Patients with increasing tertiles of EVLWV/TLV demonstrated higher mean pulmonary artery pressures at rest (34 ± 11 mm Hg vs 39 ± 14 mm Hg vs 45 ± 17 mm Hg; P = 0.0003) and during exercise (55 ± 17 mm Hg vs 59 ± 17 mm Hg vs 69 ± 22 mm Hg; P = 0.0003)., Conclusions: QCT imaging identifies subclinical lung congestion in HFpEF that is not clinically apparent but is related to abnormalities in pulmonary vascular hemodynamics. These data provide new insight into the long-term effects of altered hemodynamics on pulmonary structure and function in HFpEF., Competing Interests: Funding Support and Author Disclosures Dr Borlaug is supported by National Heart, Lung, and Blood Institute grant R01 HL128526. Dr Tschirren is the Director of Engineering at VIDA Diagnostics. All other authors have reported that they have no relationships relevant to the contents of this paper to disclose., (Copyright © 2022 American College of Cardiology Foundation. Published by Elsevier Inc. All rights reserved.)
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- 2022
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24. Association of Computed Tomography Densitometry with Disease Severity, Functional Decline, and Survival in Systemic Sclerosis-associated Interstitial Lung Disease.
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Saldana DC, Hague CJ, Murphy D, Coxson HO, Tschirren J, Peterson S, Sieren JP, Kirby M, and Ryerson CJ
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- Adult, Aged, Female, Humans, Linear Models, Lung Diseases, Interstitial physiopathology, Male, Middle Aged, Respiratory Function Tests, Retrospective Studies, Scleroderma, Systemic mortality, Scleroderma, Systemic physiopathology, Severity of Illness Index, Survival Rate, Lung Diseases, Interstitial diagnostic imaging, Lung Diseases, Interstitial mortality, Scleroderma, Systemic diagnostic imaging, Tomography, X-Ray Computed methods
- Abstract
Rationale: Measuring disease extent and progression of systemic sclerosis-associated interstitial lung disease (SSc-ILD) is challenging, with recent studies suggesting potential utility of quantitative measurements from computed tomography (CT) scans. Objectives: To determine the associations of quantitative computed tomography (qCT) density-based measures with physiological parameters, visual CT scores, and survival in patients with SSc-ILD. Methods: Patients with SSc-ILD and volumetric high-resolution CT images with ≤1.25-mm slice thickness were retrospectively identified. Cardiothoracic radiologists produced visual CT scores of ground glass, reticulation, and honeycombing, with visual fibrosis score equaling the sum of reticulation and honeycombing. qCT measurements included high-attenuation areas (HAA), skewness, kurtosis, and mean lung attenuation (MLA). Associations of qCT measures with pulmonary physiology, visual CT scores, and mortality were analyzed using Spearman's rank correlation and Cox regression. Results: A total of 503 CT scans from 170 patients with SSc-ILD were included. qCT HAA, skewness, kurtosis, and MLA were associated with lung function and visual fibrosis scores, independent of age, sex, and pack-years, using both baseline and change data. Baseline and changes in qCT measures (except ∆skewness) were associated with mortality on unadjusted analysis. Changes in all qCT variables remained associated with survival after adjustment for baseline age, sex, pack-years, and lung function, but not when adjusting for changes in lung function. ∆HAA and ∆MLA were associated with survival after adjustment for age, sex, pack-years, and change in visual CT scores. Conclusions: CT density measurements correlate with physiologic impairment and visual CT scores in patients with SSc-ILD; however, they were not associated with survival independent of changes in pulmonary physiology. The clinical utility of more sophisticated qCT measures should be explored.
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- 2020
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25. Centrally located lung cancer and risk of occult nodal disease: an objective evaluation of multiple definitions of tumour centrality with dedicated imaging software.
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Casal RF, Sepesi B, Sagar AS, Tschirren J, Chen M, Li L, Sunny J, Williams J, Grosu HB, Eapen GA, Jimenez CA, and Ost DE
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- Aged, Carcinoma, Non-Small-Cell Lung diagnostic imaging, Carcinoma, Non-Small-Cell Lung therapy, Female, Fluorodeoxyglucose F18, Humans, Logistic Models, Lung Neoplasms diagnostic imaging, Lung Neoplasms therapy, Male, Mediastinum, Middle Aged, Pneumonectomy, Positron Emission Tomography Computed Tomography, Predictive Value of Tests, Retrospective Studies, Software, Texas, Carcinoma, Non-Small-Cell Lung pathology, Lung Neoplasms pathology, Neoplasm Staging
- Abstract
Introduction: Current guidelines recommend invasive mediastinal staging in patients with centrally located radiographic stage T1N0M0 nonsmall cell lung cancer (NSCLC). The lack of a specific definition of a central tumour has resulted in discrepancies among guidelines and heterogeneity in practice patterns., Methods: Our objective was to study specific definitions of tumour centrality and their association with occult nodal disease. Pre-operative chest computed tomography scans from patients with clinical (c) T1N0M0 NSCLC were processed with a dedicated software system that divides the lungs in thirds following vertical and concentric lines. This software accurately assigns tumours to a specific third based both on the location of the centre of the tumour and its most medial aspect, creating eight possible definitions of central tumours., Results: 607 patients were included in our study. Surgery was performed for 596 tumours (98%). The overall pathological (p) N disease was: 504 (83%) N0, 56 (9%) N1, 47 (8%) N2 and no N3. The prevalence of N2 disease remained relatively low regardless of tumour location. Central tumours were associated with upstaging from cN0 to any N (pN1/pN2). Two definitions were associated with upstaging to any N: concentric lines, inner one-third, centre of the tumour (OR 3.91, 95% CI 1.85-8.26; p<0.001) and concentric lines, inner two-thirds, most medial aspect of the tumour (OR 1.91, 95% CI 1.23-2.97; p=0.004)., Conclusions: We objectively identified two specific definitions of central tumours. While the rate of occult mediastinal disease was relatively low regardless of tumour location, central tumours were associated with upstaging from cN0 to any N., Competing Interests: Conflict of interest: R.F. Casal reports grants from Siemens and Concordia, and personal fees for consultancy from Olympus and Boston Scientific, outside the submitted work. Conflict of interest: B. Sepesi has nothing to disclose. Conflict of interest: A-E.S. Sagar has nothing to disclose. Conflict of interest: J. Tschirren has nothing to disclose. Conflict of interest: M. Chen has nothing to disclose. Conflict of interest: L. Li has nothing to disclose. Conflict of interest: J. Sunny has nothing to disclose. Conflict of interest: J. Williams has nothing to disclose. Conflict of interest: H.B. Grosu has nothing to disclose. Conflict of interest: G.A. Eapen reports grants from Spiration, outside the submitted work. Conflict of interest: C.A. Jimenez reports grants from Care Fusion, outside the submitted work. Conflict of interest: D.E. Ost has nothing to disclose., (Copyright ©ERS 2019.)
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- 2019
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26. Quantitative CT of Interstitial Lung Disease.
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Newell JD Jr, Tschirren J, Peterson S, Beinlich M, and Sieren J
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- Evaluation Studies as Topic, Humans, Lung diagnostic imaging, Lung Diseases, Interstitial diagnostic imaging, Tomography, X-Ray Computed methods
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- 2019
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27. A Novel Method of Estimating Small Airway Disease Using Inspiratory-to-Expiratory Computed Tomography.
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Kirby M, Yin Y, Tschirren J, Tan WC, Leipsic J, Hague CJ, Bourbeau J, Sin DD, Hogg JC, and Coxson HO
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- Aged, Female, Humans, Male, Middle Aged, Respiration, Respiratory Function Tests, Bronchial Diseases diagnostic imaging, Tomography, X-Ray Computed methods
- Abstract
Background: Disease accumulates in the small airways without being detected by conventional measurements., Objectives: To quantify small airway disease using a novel computed tomography (CT) inspiratory-to-expiratory approach called the disease probability measure (DPM) and to investigate the association with pulmonary function measurements., Methods: Participants from the population-based CanCOLD study were evaluated using full-inspiration/full-expiration CT and pulmonary function measurements. Full-inspiration and full-expiration CT images were registered, and each voxel was classified as emphysema, gas trapping (GasTrap) related to functional small airway disease, or normal using two classification approaches: parametric response map (PRM) and DPM (VIDA Diagnostics, Inc., Coralville, IA, USA)., Results: The participants included never-smokers (n = 135), at risk (n = 97), Global Initiative for Chronic Obstructive Lung Disease I (GOLD I) (n = 140), and GOLD II chronic obstructive pulmonary disease (n = 96). PRMGasTrap and DPMGasTrap measurements were significantly elevated in GOLD II compared to never-smokers (p < 0.01) and at risk (p < 0.01), and for GOLD I compared to at risk (p < 0.05). Gas trapping measurements were significantly elevated in GOLD II compared to GOLD I (p < 0.0001) using the DPM classification only. Overall, DPM classified significantly more voxels as gas trapping than PRM (p < 0.0001); a spatial comparison revealed that the expiratory CT Hounsfield units (HU) for voxels classified as DPMGasTrap but PRMNormal (PRMNormal- DPMGasTrap = -785 ± 72 HU) were significantly reduced compared to voxels classified normal by both approaches (PRMNormal-DPMNormal = -722 ± 89 HU; p < 0.0001). DPM and PRMGasTrap measurements showed similar, significantly associations with forced expiratory volume in 1 s (FEV1) (p < 0.01), FEV1/forced vital capacity (p < 0.0001), residual volume/total lung capacity (p < 0.0001), bronchodilator response (p < 0.0001), and dyspnea (p < 0.05)., Conclusion: CT inspiratory-to-expiratory gas trapping measurements are significantly associated with pulmonary function and symptoms. There are quantitative and spatial differences between PRM and DPM classification that need pathological investigation., (© 2017 S. Karger AG, Basel.)
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- 2017
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28. Association Between Expiratory Central Airway Collapse and Respiratory Outcomes Among Smokers.
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Bhatt SP, Terry NL, Nath H, Zach JA, Tschirren J, Bolding MS, Stinson DS, Wilson CG, Curran-Everett D, Lynch DA, Putcha N, Soler X, Wise RA, Washko GR, Hoffman EA, Foreman MG, and Dransfield MT
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- Aged, Aged, 80 and over, Disease Progression, Dyspnea diagnostic imaging, Dyspnea ethnology, Dyspnea physiopathology, Exercise Tolerance, Female, Forced Expiratory Volume, Humans, Inhalation physiology, Longitudinal Studies, Male, Middle Aged, Pulmonary Atelectasis diagnostic imaging, Pulmonary Atelectasis ethnology, Pulmonary Atelectasis mortality, Pulmonary Emphysema diagnostic imaging, Pulmonary Emphysema mortality, Quality of Life, Respiration, Smoking adverse effects, Tomography, X-Ray Computed, Tracheal Diseases diagnostic imaging, Exhalation physiology, Pulmonary Atelectasis physiopathology, Pulmonary Emphysema physiopathology, Smoking physiopathology, Tracheal Diseases physiopathology
- Abstract
Importance: Central airway collapse greater than 50% of luminal area during exhalation (expiratory central airway collapse [ECAC]) is associated with cigarette smoking and chronic obstructive pulmonary disease (COPD). However, its prevalence and clinical significance are unknown., Objective: To determine whether ECAC is associated with respiratory morbidity in smokers independent of underlying lung disease., Design, Setting, and Participants: Analysis of paired inspiratory-expiratory computed tomography images from a large multicenter study (COPDGene) of current and former smokers from 21 clinical centers across the United States. Participants were enrolled from January 2008 to June 2011 and followed up longitudinally until October 2014. Images were initially screened using a quantitative method to detect at least a 30% reduction in minor axis tracheal diameter from inspiration to end-expiration. From this sample of screen-positive scans, cross-sectional area of the trachea was measured manually at 3 predetermined levels (aortic arch, carina, and bronchus intermedius) to confirm ECAC (>50% reduction in cross-sectional area)., Exposures: Expiratory central airway collapse., Main Outcomes and Measures: The primary outcome was baseline respiratory quality of life (St George's Respiratory Questionnaire [SGRQ] scale 0 to 100; 100 represents worst health status; minimum clinically important difference [MCID], 4 units). Secondary outcomes were baseline measures of dyspnea (modified Medical Research Council [mMRC] scale 0 to 4; 4 represents worse dyspnea; MCID, 0.7 units), baseline 6-minute walk distance (MCID, 30 m), and exacerbation frequency (events per 100 person-years) on longitudinal follow-up., Results: The study included 8820 participants with and without COPD (mean age, 59.7 [SD, 6.9] years; 4667 [56.7%] men; 4559 [51.7%] active smokers). The prevalence of ECAC was 5% (443 cases). Patients with ECAC compared with those without ECAC had worse SGRQ scores (30.9 vs 26.5 units; P < .001; absolute difference, 4.4 [95% CI, 2.2-6.6]) and mMRC scale scores (median, 2 [interquartile range [IQR], 0-3]) vs 1 [IQR, 0-3]; P < .001]), but no significant difference in 6-minute walk distance (399 vs 417 m; absolute difference, 18 m [95% CI, 6-30]; P = .30), after adjustment for age, sex, race, body mass index, forced expiratory volume in the first second, pack-years of smoking, and emphysema. On follow-up (median, 4.3 [IQR, 3.2-4.9] years), participants with ECAC had increased frequency of total exacerbations (58 vs 35 events per 100 person-years; incidence rate ratio [IRR], 1.49 [95% CI, 1.29-1.72]; P < .001) and severe exacerbations requiring hospitalization (17 vs 10 events per 100 person-years; IRR, 1.83 [95% CI, 1.51-2.21]; P < .001)., Conclusions and Relevance: In a cross-sectional analysis of current and former smokers, the presence of ECAC was associated with worse respiratory quality of life. Further studies are needed to assess long-term associations with clinical outcomes., Competing Interests: Dr. Terry, Dr. Nath and Mr. Zach have no conflicts of interest. Dr. Tschirren is an employee and shareholder at VIDA Diagnostics. Dr. Bolding, Mr. Stinson, Ms. Wilson, Dr. Everett, Dr. Putcha and Dr. Soler have no conflicts of interest.
- Published
- 2016
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29. Understanding the contribution of native tracheobronchial structure to lung function: CT assessment of airway morphology in never smokers.
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Diaz AA, Rahaghi FN, Ross JC, Harmouche R, Tschirren J, San José Estépar R, and Washko GR
- Subjects
- Aged, Female, Forced Expiratory Volume, Humans, Imaging, Three-Dimensional, Lung Volume Measurements, Male, Maximal Midexpiratory Flow Rate, Middle Aged, Multivariate Analysis, Radiographic Image Interpretation, Computer-Assisted, Regression Analysis, Total Lung Capacity, United States, Vital Capacity, Bronchi physiology, Bronchography methods, Tomography, X-Ray Computed, Trachea diagnostic imaging, Trachea physiology
- Abstract
Background: Computed tomographic (CT) airway lumen narrowing is associated with lower lung function. Although volumetric CT measures of airways (wall volume [WV] and lumen volume [LV]) compared to cross sectional measures can more accurately reflect bronchial morphology, data of their use in never smokers is scarce. We hypothesize that native tracheobronchial tree morphology as assessed by volumetric CT metrics play a significant role in determining lung function in normal subjects. We aimed to assess the relationships between airway size, the projected branching generation number (BGN) to reach airways of <2mm lumen diameter -the site for airflow obstruction in smokers- and measures of lung function including forced expiratory volume in 1 second (FEV1) and forced expiratory flow between 25% and 75% of vital capacity (FEF 25-75)., Methods: We assessed WV and LV of segmental and subsegmental airways from six bronchial paths as well as lung volume on CT scans from 106 never smokers. We calculated the lumen area ratio of the subsegmental to segmental airways and estimated the projected BGN to reach a <2mm-lumen-diameter airway assuming a dichotomized tracheobronchial tree model. Regression analysis was used to assess the relationships between airway size, BGN, FEF 25-75, and FEV1., Results: We found that in models adjusted for demographics, LV and WV of segmental and subsegmental airways were directly related to FEV1 (P <0.05 for all the models). In adjusted models for age, sex, race, LV and lung volume or height, the projected BGN was directly associated with FEF 25-75 and FEV1 (P = 0.001) where subjects with lower FEV1 had fewer calculated branch generations between the subsegmental bronchus and small airways. There was no association between airway lumen area ratio and lung volume., Conclusion: We conclude that in never smokers, those with smaller central airways had lower airflow and those with lower airflow had less parallel airway pathways independent of lung size. These findings suggest that variability in the structure of the tracheobronchial tree may influence the risk of developing clinically relevant smoking related airway obstruction.
- Published
- 2015
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30. Patterns of Emphysema Heterogeneity.
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Valipour A, Shah PL, Gesierich W, Eberhardt R, Snell G, Strange C, Barry R, Gupta A, Henne E, Bandyopadhyay S, Raffy P, Yin Y, Tschirren J, and Herth FJ
- Subjects
- Aged, Cohort Studies, Female, Humans, Male, Middle Aged, Pneumonectomy methods, Preoperative Care methods, Prospective Studies, Pulmonary Disease, Chronic Obstructive pathology, Pulmonary Emphysema diagnostic imaging, Pulmonary Emphysema physiopathology, Pulmonary Emphysema surgery, Sensitivity and Specificity, Severity of Illness Index, Tomography, X-Ray Computed methods, Image Processing, Computer-Assisted, Imaging, Three-Dimensional, Pulmonary Disease, Chronic Obstructive diagnostic imaging, Pulmonary Disease, Chronic Obstructive surgery
- Abstract
Background: Although lobar patterns of emphysema heterogeneity are indicative of optimal target sites for lung volume reduction (LVR) strategies, the presence of segmental, or sublobar, heterogeneity is often underappreciated., Objective: The aim of this study was to understand lobar and segmental patterns of emphysema heterogeneity, which may more precisely indicate optimal target sites for LVR procedures., Methods: Patterns of emphysema heterogeneity were evaluated in a representative cohort of 150 severe (GOLD stage III/IV) chronic obstructive pulmonary disease (COPD) patients from the COPDGene study. High-resolution computerized tomography analysis software was used to measure tissue destruction throughout the lungs to compute heterogeneity (≥15% difference in tissue destruction) between (inter-) and within (intra-) lobes for each patient. Emphysema tissue destruction was characterized segmentally to define patterns of heterogeneity., Results: Segmental tissue destruction revealed interlobar heterogeneity in the left lung (57%) and right lung (52%). Intralobar heterogeneity was observed in at least one lobe of all patients. No patient presented true homogeneity at a segmental level. There was true homogeneity across both lungs in 3% of the cohort when defining heterogeneity as ≥30% difference in tissue destruction., Conclusion: Many LVR technologies for treatment of emphysema have focused on interlobar heterogeneity and target an entire lobe per procedure. Our observations suggest that a high proportion of patients with emphysema are affected by interlobar as well as intralobar heterogeneity. These findings prompt the need for a segmental approach to LVR in the majority of patients to treat only the most diseased segments and preserve healthier ones., (© 2015 The Author(s) Published by S. Karger AG, Basel.)
- Published
- 2015
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31. Effect of emphysema on CT scan measures of airway dimensions in smokers.
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Diaz AA, Han MK, Come CE, San José Estépar R, Ross JC, Kim V, Dransfield MT, Curran-Everett D, Schroeder JD, Lynch DA, Tschirren J, Silverman EK, and Washko GR
- Subjects
- Adult, Airway Remodeling physiology, Female, Forced Expiratory Volume, Humans, Male, Middle Aged, Multivariate Analysis, Pulmonary Emphysema complications, Pulmonary Emphysema physiopathology, Regression Analysis, Smoking adverse effects, Smoking physiopathology, Bronchography, Pulmonary Emphysema diagnostic imaging, Tomography, X-Ray Computed
- Abstract
Background: In CT scans of smokers with COPD, the subsegmental airway wall area percent (WA%) is greater and more strongly correlated with FEV1 % predicted than WA% obtained in the segmental airways. Because emphysema is linked to loss of airway tethering and may limit airway expansion, increases in WA% may be related to emphysema and not solely to remodeling. We aimed to first determine whether the stronger association of subsegmental vs segmental WA% with FEV1 % predicted is mitigated by emphysema and, second, to assess the relationships among emphysema, WA%, and total bronchial area (TBA)., Methods: We analyzed CT scan segmental and subsegmental WA% (WA% = 100 × wall area/TBA) of six bronchial paths and corresponding lobar emphysema, lung function, and clinical data in 983 smokers with COPD., Results: Compared with segmental WA%, the subsegmental WA% had a greater effect on FEV1% predicted (-0.8% to -1.7% vs -1.9% to -2.6% per 1-unit increase in WA%, respectively; P < .05 for most bronchial paths). After adjusting for emphysema, the association between subsegmental WA% and FEV1 % predicted was weakened in two bronchial paths. Increases in WA% between bronchial segments correlated directly with emphysema in all bronchial paths (P < .05). In multivariate regression models, emphysema was directly related to subsegmental WA% in most bronchial paths and inversely related to subsegmental TBA in all bronchial paths., Conclusion: The greater effect of subsegmental WA% on airflow obstruction is mitigated by emphysema. Part of the emphysema effect might be due to loss of airway tethering, leading to a reduction in TBA and an increase in WA%.
- Published
- 2013
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32. Extraction of airways from CT (EXACT'09).
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Lo P, van Ginneken B, Reinhardt JM, Yavarna T, de Jong PA, Irving B, Fetita C, Ortner M, Pinho R, Sijbers J, Feuerstein M, Fabijańska A, Bauer C, Beichel R, Mendoza CS, Wiemker R, Lee J, Reeves AP, Born S, Weinheimer O, van Rikxoort EM, Tschirren J, Mori K, Odry B, Naidich DP, Hartmann I, Hoffman EA, Prokop M, Pedersen JH, and de Bruijne M
- Subjects
- Algorithms, Analysis of Variance, Databases, Factual, Humans, Lung diagnostic imaging, Radiographic Image Enhancement methods, Tomography, X-Ray Computed methods, Trachea diagnostic imaging
- Abstract
This paper describes a framework for establishing a reference airway tree segmentation, which was used to quantitatively evaluate fifteen different airway tree extraction algorithms in a standardized manner. Because of the sheer difficulty involved in manually constructing a complete reference standard from scratch, we propose to construct the reference using results from all algorithms that are to be evaluated. We start by subdividing each segmented airway tree into its individual branch segments. Each branch segment is then visually scored by trained observers to determine whether or not it is a correctly segmented part of the airway tree. Finally, the reference airway trees are constructed by taking the union of all correctly extracted branch segments. Fifteen airway tree extraction algorithms from different research groups are evaluated on a diverse set of twenty chest computed tomography (CT) scans of subjects ranging from healthy volunteers to patients with severe pathologies, scanned at different sites, with different CT scanner brands, models, and scanning protocols. Three performance measures covering different aspects of segmentation quality were computed for all participating algorithms. Results from the evaluation showed that no single algorithm could extract more than an average of 74% of the total length of all branches in the reference standard, indicating substantial differences between the algorithms. A fusion scheme that obtained superior results is presented, demonstrating that there is complementary information provided by the different algorithms and there is still room for further improvements in airway segmentation algorithms.
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- 2012
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33. Influence of rapid fluid loading on airway structure and function in healthy humans.
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Ceridon ML, Snyder EM, Strom NA, Tschirren J, and Johnson BD
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- Adult, Blood Volume drug effects, Blood Volume physiology, Female, Humans, Infusions, Intravenous, Lung drug effects, Lung Volume Measurements methods, Male, Respiratory Function Tests methods, Time Factors, Total Lung Capacity drug effects, Total Lung Capacity physiology, Young Adult, Lung anatomy & histology, Lung physiology, Sodium Chloride administration & dosage
- Abstract
Background: The present study examined the influence of rapid intravenous fluid loading (RFL) on airway structure and pulmonary vascular volumes using computed tomography imaging and the subsequent impact on pulmonary function in healthy adults (n = 16)., Methods and Results: Total lung capacity (DeltaTLC = -6%), forced vital capacity (DeltaFVC = -14%), and peak expiratory flow (DeltaPEF = -19%) decreased, and residual volume (DeltaRV = +38%) increased post-RFL (P < .05). Airway luminal cross-sectional area (CSA) decreased at the trachea, and at airway generation 3 (P < .05), wall thickness changed minimally with a tendency for increasing in generation five (P = .13). Baseline pulmonary function was positively associated with airway luminal CSA; however, this relationship deteriorated after RFL. Lung tissue volume and pulmonary vascular volumes increased 28% (P < .001) post-RFL, but did not fully account for the decline in TLC., Conclusions: These data suggest that RFL results in obstructive/restrictive PF changes that are most likely related to structural changes in smaller airways or changes in extrapulmonary vascular beds., (Copyright 2010. Published by Elsevier Inc.)
- Published
- 2010
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34. Comparison of airway diameter measurements from an anthropomorphic airway tree phantom using hyperpolarized 3He MRI and high-resolution computed tomography.
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Tzeng YS, Hoffman E, Cook-Granroth J, Maurer R, Shah N, Mansour J, Tschirren J, and Albert M
- Subjects
- Algorithms, Bronchi anatomy & histology, Computer Graphics, Humans, Image Enhancement methods, Isotopes, Pulmonary Alveoli anatomy & histology, Radiographic Image Enhancement methods, Trachea anatomy & histology, Helium, Image Processing, Computer-Assisted methods, Lung anatomy & histology, Magnetic Resonance Imaging methods, Phantoms, Imaging, Tomography, X-Ray Computed methods
- Abstract
An anthropomorphic airway tree phantom was imaged with both hyperpolarized (HP) 3He MRI using a dynamic projection scan and computed tomography (CT). Airway diameter measurements from the HP 3He MR images obtained using a newly developed model-based algorithm were compared against their corresponding CT values quantified with a well-established method. Of the 45 airway segments that could be evaluated with CT, only 14 airway segments (31%) could be evaluated using HP 3He MRI. No airway segments smaller than approximately 4 mm in diameter and distal to the fourth generation were adequate for analysis in MRI. For the 14 airway segments measured, only two airway segments yielded a non-equivalent comparison between the two imaging modalities, while eight more had inconclusive comparison results, leaving only four airway segments (29%) that satisfied the designed equivalence criteria. Some of the potential problems in airway diameter quantification described in the formulation of the model-based algorithm were observed in this study. These results suggest that dynamic projection HP 3He MRI may have limited utility for measuring airway segment diameters, particularly those of the central airways., (Copyright (c) 2007 Wiley-Liss, Inc.)
- Published
- 2007
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35. Quantitative analysis of pulmonary airway tree structures.
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Palágyi K, Tschirren J, Hoffman EA, and Sonka M
- Subjects
- Algorithms, Computer Simulation, Humans, Models, Anatomic, Phantoms, Imaging, Radiographic Image Enhancement methods, Reproducibility of Results, Bronchi anatomy & histology, Bronchography methods, Image Processing, Computer-Assisted methods, Imaging, Three-Dimensional methods, Lung diagnostic imaging, Tomography, X-Ray Computed methods
- Abstract
A method for computationally efficient skeletonization of three-dimensional tubular structures is reported. The method is specifically targeting skeletonization of vascular and airway tree structures in medical images but it is general and applicable to many other skeletonization tasks. The developed approach builds on the following novel concepts and properties: fast curve-thinning algorithm to increase computational speed, endpoint re-checking to avoid generation of spurious side branches, depth-and-length sensitive pruning, and exact tree-branch partitioning allowing branch volume and surface measurements. The method was validated in computer and physical phantoms and in vivo CT scans of human lungs. The validation studies demonstrated sub-voxel accuracy of branch point positioning, insensitivity to changes of object orientation, and high reproducibility of derived quantitative indices of the tubular structures offering a significant improvement over previously reported methods (p<<0.001).
- Published
- 2006
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36. CT-based geometry analysis and finite element models of the human and ovine bronchial tree.
- Author
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Tawhai MH, Hunter P, Tschirren J, Reinhardt J, McLennan G, and Hoffman EA
- Subjects
- Animals, Humans, Sheep, Algorithms, Bronchi anatomy & histology, Imaging, Three-Dimensional methods, Models, Biological, Tomography, X-Ray Computed methods
- Abstract
The interpretation of experimental results from functional medical imaging is complicated by intersubject and interspecies differences in airway geometry. The application of computational models in understanding the significance of these differences requires methods for generation of subject-specific geometric models of the bronchial airway tree. In the current study, curvilinear airway centerline and diameter models have been fitted to human and ovine bronchial trees using detailed data segmented from multidetector row X-ray-computed tomography scans. The trees have been extended to model the entire conducting airway system by using a volume-filling algorithm to generate airway centerline locations within detailed volume descriptions of the lungs or lobes. Analysis of the geometry of the scan-based and model-based airways has verified their consistency with measures from previous anatomic studies and has provided new anatomic data for the ovine bronchial tree. With the use of an identical parameter set, the volume-filling algorithm has produced airway trees with branching asymmetry appropriate for the human and ovine lung, demonstrating the dependence of the method on the shape of the lung or lobe volume. The modeling approach that has been developed can be applied to any level of detail of the airway tree and into any volume shape for the lung; hence it can be used directly for different individuals or animals and for any number of scan-based airways. The resulting models are subject-specific computational meshes with anatomically consistent geometry, suitable for application in simulation studies.
- Published
- 2004
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37. Evaluation of the human airway with multi-detector x-ray-computed tomography and optical imaging.
- Author
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Suter M, Tschirren J, Reinhardt J, Sonka M, Hoffman E, Higgins W, and McLennan G
- Subjects
- Bronchoscopy methods, Humans, Inflammation, Reference Values, Respiratory System pathology, Imaging, Three-Dimensional, Optics and Photonics, Respiratory System diagnostic imaging, Respiratory Tract Diseases diagnosis, Tomography, X-Ray Computed methods
- Abstract
Defining the healthy human airway is important in enhancing our understanding of pulmonary disease states such as inflammation and cancer. The structure of the human airway, both static and dynamic, can be assessed using multi-detector CT (MDCT) scanning. This modality also allows for the evaluation of structures outside of the airway. The airway wall can be directly visualized using CCD chip high-resolution color optical imaging through endoscopy allowing bronchial wall evaluation by traditional biopsy methods, as well as by newer optically based strategies. We suggest that these two imaging modalities, MDCT and optical imaging, provide complementary information about the normal airway, and the airway in various diseases. Methods for evaluating the human airway using MDCT images are presented facilitating automatic airway segmentation, branchpoint finding and airway dimension analysis. The airway wall color is objectively evaluated as an important surrogate for airway wall inflammation and cancer formation, and the integration of the color endoscopic information into the MDCT scan data set is currently ongoing. The amalgamation of these two digital imaging modalities appears increasingly useful for enabling biopsy techniques, and for relating structure and function of the airway. In addition, these developments may be progressively more useful in understanding the normal airway structure and function, for defining airway diseases patterns and for guiding biopsy and therapeutic procedures.
- Published
- 2004
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38. Matching lung volume data sets--a novel approach.
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Recheis W, Straub M, Tschirren J, and Nedden Dz
- Subjects
- Animals, Hominidae anatomy & histology, Humans, Image Processing, Computer-Assisted, Lung anatomy & histology, Anthropology, Physical methods, Diffusion of Innovation, Lung diagnostic imaging, Lung Volume Measurements methods, Tomography, X-Ray Computed methods
- Abstract
There is a significant demand in matching CT datasets of the lung. The increasing number of CT slices per examination due to the higher resolution of modern CT scanners and the need for quantification of the progress of disease and healing processes in follow-up studies. A volunteer's lung was scanned by the means of multidetector CT in two different states of ventilation. The necessary lung structures for the matching procedure like lung surface and branching points were segmented. A thin-plate spline method was used to calculate the matched lung volume. The preliminary results show an average error of 2 voxel, i.e. 2mm. The calculation of the transformation matrix takes about one second on a conventional PC, which is considerably faster than other methods described in literature. The method described may be apt to be introduced in radiological practice when it comes to compare high resolution CT scans in follow-up studies quantitatively.
- Published
- 2004
39. Characterization of the interstitial lung diseases via density-based and texture-based analysis of computed tomography images of lung structure and function.
- Author
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Hoffman EA, Reinhardt JM, Sonka M, Simon BA, Guo J, Saba O, Chon D, Samrah S, Shikata H, Tschirren J, Palagyi K, Beck KC, and McLennan G
- Subjects
- Humans, Lung pathology, Lung physiology, Lung Diseases, Interstitial pathology, Lung Diseases, Interstitial physiopathology, Pulmonary Ventilation, Image Processing, Computer-Assisted, Lung diagnostic imaging, Lung Diseases, Interstitial diagnostic imaging, Tomography, X-Ray Computed
- Abstract
Rationale and Objectives: Efforts to establish a quantitative approach to the computed tomography (CT)-based character ization of the lung parenchyma in interstitial lung disease (including emphysema) has been sought. The accuracy of these tools must be site independent. Multi-detector row CT has remained the gold standard for imaging the lung, and it provides the ability to image both lung structure as well as lung function., Material and Methods: Imaging is via multi-detector row CT and protocols include careful control of lung volume during scanning. Characterization includes not only anatomic-based measures but also functional measures including regional parameters derived from measures of pulmonary blood flow and ventilation. Image processing includes the automated detection of the lungs, lobes, and airways. The airways provide the road map to the lung parenchyma. Software automatically detects the airways, the airway centerlines, and the branch points, and then automatically labels the airway tree segments with a standardized set of labels, allowing for intersubject as well intrasubject comparisons across time. By warping all lungs to a common atlas, the atlas provides the range of normality for the various parameters provided by CT imaging., Results: Imaged density and textural changes mark underlying structural changes at the most peripheral regions of the lung. Additionally, texture-based alterations in the parameters of blood flow may provide early evidence of pathologic processes. Imaging of stable xenon gas provides a regional measure of ventilation which, when coupled with measures of flow, provide for a textural analysis regional of ventilation-perfusion matching., Conclusion: With the improved resolution and speed of CT imaging, the patchy nature of regional parenchymal pathology can be imaged as texture of structure and function. With careful control of imaging protocols and the use of objective image analysis methods it is possible to provide site-independent tools for the assessment of interstitial lung disease. There remains a need to validate these methods, which requires interdisciplinary and cross-institutional efforts to gather appropriate data bases of images along with a consensus on appropriate ground truths associated with the images. Furthermore, there is the growing need for scanner manufacturers to focus on not just visually pleasing images, but on quantitatifiably accurate images.
- Published
- 2003
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40. Quantitative analysis of intrathoracic airway trees: methods and validation.
- Author
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Palágyi K, Tschirren J, and Sonka M
- Subjects
- Animals, Computer Simulation, Humans, Imaging, Three-Dimensional instrumentation, Lung diagnostic imaging, Phantoms, Imaging, Radiographic Image Enhancement instrumentation, Radiographic Image Enhancement methods, Radiographic Image Interpretation, Computer-Assisted instrumentation, Radiography, Thoracic methods, Reproducibility of Results, Sensitivity and Specificity, Subtraction Technique, Algorithms, Bronchography methods, Imaging, Three-Dimensional methods, Pattern Recognition, Automated, Radiographic Image Interpretation, Computer-Assisted methods
- Abstract
A method for quantitative assessment of tree structures is reported allowing evaluation of airway or vascular tree morphology and its associated function. Our skeletonization and branch-point identification method provides a basis for tree quantification or tree matching, tree-branch diameter measurement in any orientation, and labeling individual branch segments. All main components of our method were specifically developed to deal with imaging artifacts typically present in volumetric medical image data. The proposed method has been tested in 343 computer phantom instances subjected to changes of its orientation as well as in a repeatedly CT-scanned rubber plastic phantom width sub-voxel accuracy and high reproducibility. Application to 35 human in vivo trees yielded reliable and well-positioned centerlines and branch-points.
- Published
- 2003
- Full Text
- View/download PDF
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