41 results on '"Trueba-Santiso A"'
Search Results
2. Use of C–Cl CSIA to elucidate origin and fate of DCM in complex contaminated field sites
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Blázquez-Pallí Natàlia, Shouakar-Stash Orfan, Palau Jordi, Trueba-Santiso Alba, Varias Joan, Bosch Marçal, Soler Albert, Vicent Teresa, Marco-Urrea Ernest, and Rosell Mònica
- Subjects
Environmental sciences ,GE1-350 - Abstract
We used C-Cl dual isotope analysis and microcosm studies for elucidating the origin and fate of the common groundwater pollutant dichloromethane (DCM) in two different multi-contaminant field sites in Catalonia, Spain; where DCM contamination could be the result of direct solvent releases and/or chloroform (CF) transformation. Known commercial solvents isotopic compositions as well as characteristic C-Cl dual isotope slopes from our anaerobic enrichment culture containing Dehalobacterium sp., capable of fermenting DCM, and other bacteria from the literature were used for field data interpretation.
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- 2019
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3. Dual C–Cl isotope fractionation offers potential to assess biodegradation of 1,2-dichloropropane and 1,2,3-trichloropropane by Dehalogenimonas cultures
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Trueba-Santiso, Alba, Torrentó, Clara, Soder-Walz, Jesica M., Fernández-Verdejo, David, Rosell, Mònica, and Marco-Urrea, Ernest
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- 2024
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4. Proteogenomics of the novel Dehalobacterium formicoaceticum strain EZ94 highlights a key role of methyltransferases during anaerobic dichloromethane degradation
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Wasmund, Kenneth, Trueba-Santiso, Alba, Vicent, Teresa, Adrian, Lorenz, Vuilleumier, Stéphane, and Marco-Urrea, Ernest
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- 2023
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- View/download PDF
5. Environmental proteomics as a useful methodology for early-stage detection of stress in anammox engineered systems
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Guzmán-Fierro, Víctor, Dieguez-Seoane, Alberto, Roeckel, Marlene, Lema, Juan M., and Trueba-Santiso, Alba
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- 2024
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6. Assessing labelled carbon assimilation from poly butylene adipate-co-terephthalate (PBAT) monomers during thermophilic anaerobic digestion
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Poulsen, Jan Struckmann, Trueba-Santiso, Alba, Lema, Juan M., Echers, Simon Gregersen, Wimmer, Reinhard, and Nielsen, Jeppe Lund
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- 2023
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7. Metalloenzymes play major roles to achieve high-rate nitrogen removal in N-damo communities: Lessons from metaproteomics
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Quiton-Tapia, Silvana, Trueba-Santiso, Alba, Garrido, Juan M., Suarez, Sonia, and Omil, Francisco
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- 2023
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8. Valorization of bioethanol by-products to produce unspecific peroxygenase with Agrocybe aegerita: Technological and proteomic perspectives
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González-Rodríguez, Sandra, Trueba-Santiso, Alba, Lu-Chau, Thelmo A., Moreira, María Teresa, and Eibes, Gemma
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- 2023
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9. Bundling the removal of emerging contaminants with the production of ligninolytic enzymes from residual streams
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González-Rodríguez, Sandra, Lu-Chau, Thelmo A., Trueba-Santiso, Alba, Eibes, Gemma, and Moreira, María Teresa
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- 2022
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10. Environmental proteomics as a useful methodology for early-stage detection of stress in anammox engineered systems
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Universidade de Santiago de Compostela. Departamento de Enxeñaría Química, Guzmán-Fierro, Víctor, Diéguez-Seoane, Alberto, Roeckel, Marlene, Lema Rodicio, Juan Manuel, Trueba-Santiso, Alba, Universidade de Santiago de Compostela. Departamento de Enxeñaría Química, Guzmán-Fierro, Víctor, Diéguez-Seoane, Alberto, Roeckel, Marlene, Lema Rodicio, Juan Manuel, and Trueba-Santiso, Alba
- Abstract
Anammox bacteria are widely applied worldwide for denitrification of urban wastewater. Differently, their application in the case of industrial effluents has been more limited. Those frequently present high loads of contaminants, demanding an individual evaluation of their treatability by anammox technologies. Bioreactors setting up and recovery after contaminants-derived perturbations are slow. Also, toxicity is frequently not acute but cumulative, which causes negative macroscopic effects to appear only after medium or long-term operations. All these particularities lead to relevant economic and time losses. We hypothesized that contaminants cause changes at anammox proteome level before perturbations in the engineered systems are detectable by macroscopic analyses. In this study, we explored the usefulness of short-batch tests combined with environmental proteomics for the early detection of those changes. Copper was used as a model of stressor contaminant, and anammox granules were exposed to increasing copper concentrations including previously reported IC50 values. The proteomic results revealed that specific anammox proteins involved in stress response (bacterioferritin, universal stress protein, or superoxide dismutase) were overexpressed in as short a time as 28 h at the higher copper concentrations. Consequently, EPS production was also increased, as indicated by the alginate export family protein, polysaccharide biosynthesis protein, and sulfotransferase increased expression. The described workflow can be applied to detect early-stage stress biomarkers of the negative effect of other metals, organics, or even changes in physical-chemical parameters such as pH or temperature on anammox-engineered systems. On an industrial level, it can be of great value for decision-making, especially before dealing with new effluents on facilities, deriving important economic and time savings.
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- 2024
11. Sulfamethoxazole is Metabolized and Mineralized at Extremely Low Concentrations.
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Lopez Gordillo, Ana P., Trueba-Santiso, Alba, Lema, Juan M., Schäffer, Andreas, and Smith, Kilian E. C.
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- 2024
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12. Exploring coaggregation mechanisms involved in biofilm formation in drinking water through a proteomic-based approach.
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Afonso, Ana C, Simões, Manuel, Saavedra, Maria José, Simões, Lúcia, Lema, Juan M, and Trueba-Santiso, Alba
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CELL communication ,BIOFILMS ,DRINKING water ,SWARMING (Zoology) ,PROTEOMICS ,ECONOMIC impact - Abstract
Aim Coaggregation, a highly specific cell–cell interaction mechanism, plays a pivotal role in multispecies biofilm formation. While it has been mostly studied in oral environments, its occurrence in aquatic systems is also acknowledged. Considering biofilm formation's economic and health-related implications in engineered water systems, it is crucial to understand its mechanisms. Here, we hypothesized that traceable differences at the proteome level might determine coaggregation ability. Methods and Results Two strains of Delftia acidovorans , isolated from drinking water were studied. First, in vitro motility assays indicated more swarming and twitching motility for the coaggregating strain (C+) than non-coaggregating strain (C−). By transmission electronic microscopy, we confirmed the presence of flagella for both strains. By proteomics, we detected a significantly higher expression of type IV pilus twitching motility proteins in C+, in line with the motility assays. Moreover, flagellum ring proteins were more abundant in C+, while those involved in the formation of the flagellar hook (FlE and FilG) were only detected in C−. All the results combined suggested structural and conformational differences between stains in their cell appendages. Conclusion This study presents an alternative approach for identifying protein biomarkers to detect coaggregation abilities in uncharacterized strains. [ABSTRACT FROM AUTHOR]
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- 2024
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13. Metalloenzymes play major roles to achieve high-rate nitrogen removal in N-damo communities: Lessons from metaproteomics
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Universidade de Santiago de Compostela. Departamento de Enxeñaría Química, Universidade de Santiago de Compostela. Instituto Interdisciplinar de Tecnoloxías Ambientais (CRETUS), Quiton-Tapia, Silvana, Trueba-Santiso, Alba, Garrido Fernández, Juan Manuel, Suárez Martínez, Sonia, Omil Prieto, Francisco, Universidade de Santiago de Compostela. Departamento de Enxeñaría Química, Universidade de Santiago de Compostela. Instituto Interdisciplinar de Tecnoloxías Ambientais (CRETUS), Quiton-Tapia, Silvana, Trueba-Santiso, Alba, Garrido Fernández, Juan Manuel, Suárez Martínez, Sonia, and Omil Prieto, Francisco
- Abstract
Nitrite-driven anaerobic methane oxidation (N-damo) is a promising biological process to achieve carbon–neutral wastewater treatment solutions, aligned with the sustainable development goals. Here, the enzymatic activities in a membrane bioreactor highly enriched in N-damo bacteria operated at high nitrogen removal rates were investigated. Metaproteomic analyses, with a special focus on metalloenzymes, revealed the complete enzymatic route of N-damo including their unique nitric oxide dismutases. The relative protein abundance evidenced that “Ca. Methylomirabilis lanthanidiphila” was the predominant N-damo species, attributed to the induction of its lanthanide-binding methanol dehydrogenase in the presence of cerium. Metaproteomics also disclosed the activity of the accompanying taxa in denitrification, methylotrophy and methanotrophy. The most abundant functional metalloenzymes from this community require copper, iron, and cerium as cofactors which was correlated with the metal consumptions in the bioreactor. This study highlights the usefulness of metaproteomics for evaluating the enzymatic activities in engineering systems to optimize microbial management
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- 2023
14. Valorization of bioethanol by-products to produce unspecific peroxygenase with Agrocybe aegerita: Technological and proteomic perspectives
- Author
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Universidade de Santiago de Compostela. Departamento de Enxeñaría Química, Universidade de Santiago de Compostela. Instituto Interdisciplinar de Tecnoloxías Ambientais (CRETUS), González Rodríguez, Sandra, Trueba Santiso, Alba, Lu Chau, Thelmo Alejandro, Moreira Vilar, María Teresa, Eibes González, Gemma María, Universidade de Santiago de Compostela. Departamento de Enxeñaría Química, Universidade de Santiago de Compostela. Instituto Interdisciplinar de Tecnoloxías Ambientais (CRETUS), González Rodríguez, Sandra, Trueba Santiso, Alba, Lu Chau, Thelmo Alejandro, Moreira Vilar, María Teresa, and Eibes González, Gemma María
- Abstract
Unspecific peroxygenase (UPO) presents a wide range of biotechnological applications. This study targets the use of by-products from bioethanol synthesis to produce UPO by Agrocybe aegerita. Solid-state and submerged fermentations (SSF and SmF) were evaluated, achieving the highest titers of UPO and laccase in SmF using vinasse as nutrients source. Optimized UPO production of 331 U/L was achieved in 50% (v:v) vinasse with an inoculum grown for 14 days. These conditions were scaled-up to a 4 L reactor, achieving a UPO activity of 265 U/L. Fungal proteome expression was analyzed before and after UPO activity appeared by shotgun mass spectrometry proteomics. Laccase, dye-decolorizing peroxidases (DyP), lectins and proteins involved in reactive oxygen species (ROS) production and control were detected (in addition to UPO). Interestingly, the metabolism of complex sugars and nitrogen sources had a different activity at the beginning and end of the submerged fermentation
- Published
- 2023
15. Proteogenomics of the novel Dehalobacterium formicoaceticum strain EZ94 highlights a key role of methyltransferases during anaerobic dichloromethane degradation
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Wasmund, K., Trueba-Santiso, A., Vicent, T., Adrian, Lorenz, Vuilleumier, S., Marco-Urrea, E., Wasmund, K., Trueba-Santiso, A., Vicent, T., Adrian, Lorenz, Vuilleumier, S., and Marco-Urrea, E.
- Abstract
Dichloromethane (DCM, methylene chloride) is a toxic, high-volume industrial pollutant of long-standing. Anaerobic biodegradation is crucial for its removal from contaminated environments, yet prevailing mechanisms remain unresolved, especially concerning dehalogenation. In this study, we obtained an assembled genome of a novel DCM-degrading strain, Dehalobacterium formicoaceticum strain EZ94, from a stable DCM-degrading consortium, and we analyzed its proteome during degradation of DCM. A gene cluster recently predicted to play a major role in anaerobic DCM catabolism (the mec cassette) was found. Methyltransferases and other proteins encoded by the mec cassette were among the most abundant proteins produced, suggesting their involvement in DCM catabolism. Reductive dehalogenases were not detected. Genes and corresponding proteins for a complete Wood-Ljungdahl pathway, which could enable further metabolism of DCM carbon, were also found. Unlike for the anaerobic DCM degrader “Ca. F. warabiya,” no genes for metabolism of the quaternary amines choline and glycine betaine were identified. This work provides independent and supporting evidence that mec-associated methyltransferases are key to anaerobic DCM metabolism.
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- 2023
16. Effect of by-pass and effluent recirculation on nitrogen removal in hybrid constructed wetlands for domestic and industrial wastewater treatment
- Author
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Torrijos, V., Gonzalo, O.G., Trueba-Santiso, A., Ruiz, I., and Soto, M.
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- 2016
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17. Dual C–Br Isotope Fractionation Indicates Distinct Reductive Dehalogenation Mechanisms of 1,2-Dibromoethane in Dehalococcoides- and Dehalogenimonas-Containing Cultures
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Palau, Jordi, primary, Trueba-Santiso, Alba, additional, Yu, Rong, additional, Mortan, Siti Hatijah, additional, Shouakar-Stash, Orfan, additional, Freedman, David L., additional, Wasmund, Kenneth, additional, Hunkeler, Daniel, additional, Marco-Urrea, Ernest, additional, and Rosell, Monica, additional
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- 2023
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18. Dual C-Br isotope fractionation indicates distinct reductive dehalogenation mechanisms of 1,2-dibromoethane in Dehalococcoides- and Dehalogenimonas-containing cultures
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Jordi Palau, Alba Trueba-Santiso, Rong Yu, Siti Hatijah Mortan, Orfan Shouakar-Stash, David L. Freedman, Kenneth Wasmund, Daniel Hunkeler, Ernest Marco-Urrea, and Monica Rosell
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Isòtops ,Isotopes ,Biodegradation ,Carbon isotopes ,Environmental Chemistry ,General Chemistry ,Biodegradació ,Isòtops de carboni - Abstract
Brominated organic compounds such as 1,2-dibromoethane (1,2-DBA) are highly toxic groundwater contaminants. Multi-element compound-specific isotope analysis bears the potential to elucidate the biodegradation pathways of 1,2-DBA in the environment, which is crucial information to assess its fate in contaminated sites. This study investigates for the first time dual C−Br isotope fractionation during in vivo biodegradation of 1,2-DBA by two anaerobic enrichment cultures containing organohaliderespiring bacteria (i.e., either Dehalococcoides or Dehalogenimonas). Different εbulk C values (−1.8 ± 0.2 and −19.2 ± 3.5¿, respectively) were obtained, whereas their respective εbulk Br values were lower and similar to each other (−1.22 ± 0.08 and −1.2 ± 0.5¿), leading to distinctly different trends (ΛC−Br = Δδ13C/Δδ81Br ≈ εbulkC /εbulkBr ) in a dual C−Br isotope plot (1.4 ± 0.2 and 12 ± 4, respectively). These results suggest the occurrence of different underlying reaction mechanisms during enzymatic 1,2-DBA transformation, that is, concerted dihaloelimination and nucleophilic substitution (SN2-reaction). The strongly pathway-dependent ΛC−Br values illustrate the potential of this approach to elucidate the reaction mechanism of 1,2-DBA in the field and to select appropriate εbulkC values for quantification of biodegradation. The results of this study provide valuable information for future biodegradation studies of 1,2-DBA in contaminated sites.
- Published
- 2023
19. Valorization of bioethanol by-products to produce unspecific peroxygenase with Agrocybe aegerita: Technological and proteomic perspectives
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Sandra González-Rodríguez, Alba Trueba-Santiso, Thelmo A. Lu-Chau, María Teresa Moreira, Gemma Eibes, Universidade de Santiago de Compostela. Departamento de Enxeñaría Química, and Universidade de Santiago de Compostela. Instituto Interdisciplinar de Tecnoloxías Ambientais (CRETUS)
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Vinasse ,Unspecific peroxygenase (UPO) ,Agrocybe aegerita ,Residues valorization ,Proteomic analysis ,Bioengineering ,General Medicine ,Molecular Biology ,Biotechnology ,Submerged fermentation - Abstract
Unspecific peroxygenase (UPO) presents a wide range of biotechnological applications. This study targets the use of by-products from bioethanol synthesis to produce UPO by Agrocybe aegerita. Solid-state and submerged fermentations (SSF and SmF) were evaluated, achieving the highest titers of UPO and laccase in SmF using vinasse as nutrients source. Optimized UPO production of 331 U/L was achieved in 50% (v:v) vinasse with an inoculum grown for 14 days. These conditions were scaled-up to a 4 L reactor, achieving a UPO activity of 265 U/L. Fungal proteome expression was analyzed before and after UPO activity appeared by shotgun mass spectrometry proteomics. Laccase, dye-decolorizing peroxidases (DyP), lectins and proteins involved in reactive oxygen species (ROS) production and control were detected (in addition to UPO). Interestingly, the metabolism of complex sugars and nitrogen sources had a different activity at the beginning and end of the submerged fermentation S.G., A.T. and G.E. thank their grants (BES-2017-081677, FJC2019-041664-I and RYC2018-024846-I, respectively) funded by MCIN/AEI/ 10.13039/501100011033, and by “ERDF A way of making Europe” and “ESF Investing in your future”. Authors would like to thank the use of USC Mass Spectrometry and Proteomics facilities and Bioetanol Galicia S.A. for the supply of the substrates used in the fermentations. The authors belong to the Galician Competitive Research Groups (GRC)_ ED431C-2021/37. The program is co-funded by FEDER (UE) SI
- Published
- 2023
20. Sulfamethoxazole Enhances Specific Enzymatic Activities under Aerobic Heterotrophic Conditions: A Metaproteomic Approach
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Kennes-Veiga, David M., primary, Trueba-Santiso, Alba, additional, Gallardo-Garay, Valentina, additional, Balboa, Sabela, additional, Carballa, Marta, additional, and Lema, Juan M., additional
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- 2022
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21. Assessment of aerobic biodegradation of lower-chlorinated benzenes in contaminated groundwater using field-derived microcosms and compound-specific carbon isotope fractionation
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Trueba-Santiso, Alba, primary, Palau, Jordi, additional, Soder-Walz, Jesica M., additional, Vicent, Teresa, additional, and Marco-Urrea, Ernest, additional
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- 2022
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22. Sulfamethoxazole enhances specific enzymatic activities under aerobic heterotrophic conditions: a metaproteomic approach
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David M. Kennes-Veiga, Alba Trueba-Santiso, Valentina Gallardo-Garay, Sabela Balboa, Marta Carballa, Juan M. Lema, Universidade de Santiago de Compostela. Departamento de Enxeñaría Química, and Universidade de Santiago de Compostela. Instituto Interdisciplinar de Tecnoloxías Ambientais (CRETUS)
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Sewage ,Sulfamethoxazole ,Organic compounds ,Sludges ,Genetics ,Environmental Chemistry ,General Chemistry ,Peptides and proteins ,Wastewater ,Carbon ,Biotransformation ,Anti-Bacterial Agents ,Pterins - Abstract
The growing concern about antibiotic-resistant microorganisms has focused on the sludge from wastewater treatment plants (WWTPs) as a potential hotspot for their development and spread. To this end, it seems relevant to analyze the changes on the microbiota as a consequence of the antibiotics that wastewater may contain. This study aims at determining whether the presence of sulfamethoxazole (SMX), even in relatively low concentrations, modifies the microbial activities and the enzymatic expression of an activated sludge under aerobic heterotrophic conditions. For that purpose, we applied a metaproteomic approach in combination with genomic and transformation product analyses. SMX was biotransformed, and the metabolite 2,4(1H,3H)-pteridinedione-SMX (PtO-SMX) from the pterin-conjugation pathway was detected at all concentrations tested. Metaproteomics showed that SMX at 50–2000 μg/L slightly affected the microbial community structure, which was confirmed by DNA metabarcoding. Interestingly, an enhanced activity of the genus Corynebacterium and specifically of five enzymes involved in its central carbon metabolism was found at increased SMX concentrations. Our results suggest a role of Corynebacterium genus on SMX risks mitigation in our bioreactors This research was funded by the Spanish Government (Agencia Estatal de Investigación) through the ANTARES project (PID2019-110346RB-C21), a PhD Xunta de Galicia Grant (ED481A-2018/113, D.M.K.-V.) and a Juan de la Cierva-Formación postdoctoral grant (FJC2019-041664-I, A.T.-S.). The authors belong to the Galician Competitive Research Groups (GRC_ ED431C-2021/37) SI
- Published
- 2022
23. Assessment of aerobic biodegradation of lower-chlorinated benzenes in contaminated groundwater using field-derived microcosms and compound-specific carbon isotope fractionation
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Teresa Vicent, Ernest Marco-Urrea, Alba Trueba-Santiso, JESICA MAIARA SODER-WALZ, and Jordi Palau
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Carbon Isotopes ,Environmental Engineering ,Groundwater flow ,Biodegradació ,General Medicine ,Chemical Fractionation ,Bioremediació ,Aerobic biodegradation ,Chlorobenzenes ,Biodegradation, Environmental ,Circulació d'aigües subterrànies ,Geochemistry ,Biodegradation ,Environmental Chemistry ,Geoquímica ,Isotope fractionation ,Groundwater ,Anaerobic reductive dehalogenation ,Natural attenuation ,Water Pollutants, Chemical ,Bioremediation ,General Environmental Science - Abstract
Altres ajuts: acords transformatius de la UAB Altres ajuts: Agència catalana de l'Aigua CTN1900901 Biodegradation of lower chlorinated benzenes (tri-, di- and monochlorobenzene) was assessed at a coastal aquifer contaminated with multiple chlorinated aromatic hydrocarbons. Field-derived microcosms, established with groundwater from the source zone and amended with a mixture of lower chlorinated benzenes, evidenced biodegradation of monochlorobenzene (MCB) and 1,4-dichlorobenzene (1,4-DCB) in aerobic microcosms, whereas the addition of lactate in anaerobic microcosms did not enhance anaerobic reductive dechlorination. Aerobic microcosms established with groundwater from the plume consumed several doses of MCB and concomitantly degraded the three isomers of dichlorobenzene with no observable inhibitory effect. In the light of these results, we assessed the applicability of compound stable isotope analysis to monitor a potential aerobic remediation treatment of MCB and 1,4-DCB in this site. The carbon isotopic fractionation factors (ε) obtained from field-derived microcosms were -0.7 ± 0.1 ‰ and -1.0 ± 0.2 ‰ for MCB and 1,4-DCB, respectively. For 1,4-DCB, the carbon isotope fractionation during aerobic biodegradation was reported for the first time. The weak carbon isotope fractionation values for the aerobic pathway would only allow tracing of in situ degradation in aquifer parts with high extent of biodegradation. However, based on the carbon isotope effects measured in this and previous studies, relatively high carbon isotope shifts (i.e., ∆δ13C > 4.0 ‰) of MCB or 1,4-DCB in contaminated groundwater would suggest that their biodegradation is controlled by anaerobic reductive dechlorination.
- Published
- 2022
24. Genome Sequence, Proteome Profile, and Identification of a Multiprotein Reductive Dehalogenase Complex in
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Alba, Trueba-Santiso, Kenneth, Wasmund, Jesica M, Soder-Walz, Ernest, Marco-Urrea, and Lorenz, Adrian
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Proteomics ,genome sequencing ,Dehalogenimonas alkenigignens strain BRE15M ,Bacterial Proteins ,Halogenation ,Proteome ,proteome profiling ,Dehalococcoidia ,organohalide respiration ,Chloroflexi ,dihaloelimination ,1,2-dichloropropane ,Article - Abstract
Bacteria of the genus Dehalogenimonas respire with vicinally halogenated alkanes via dihaloelimination. We aimed to describe involved proteins and their supermolecular organization. Metagenomic sequencing of a Dehalogenimonas-containing culture resulted in a 1.65 Mbp draft genome of Dehalogenimonas alkenigignens strain BRE15M. It contained 31 full-length reductive dehalogenase homologous genes (rdhA), but only eight had cognate rdhB gene coding for membrane-anchoring proteins. Shotgun proteomics of cells grown with 1,2-dichloropropane as an electron acceptor identified 1152 proteins representing more than 60% of the total proteome. Ten RdhA proteins were detected, including a DcpA ortholog, which was the strongest expressed RdhA. Blue native gel electrophoresis (BNE) demonstrating maximum activity was localized in a protein complex of 146–242 kDa. Protein mass spectrometry revealed the presence of DcpA, its membrane-anchoring protein DcpB, two hydrogen uptake hydrogenase subunits (HupL and HupS), an iron–sulfur protein (HupX), and subunits of a redox protein with a molybdopterin-binding motif (OmeA and OmeB) in the complex. BNE after protein solubilization with different detergent concentrations revealed no evidence for an interaction between the putative respiratory electron input module (HupLS) and the OmeA/OmeB/HupX module. All detected RdhAs comigrated with the organohalide respiration complex. Based on genomic and proteomic analysis, we propose quinone-independent respiration in Dehalogenimonas.
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- 2020
25. Genome Sequence, Proteome Profile, and Identification of a Multiprotein Reductive Dehalogenase Complex in Dehalogenimonas alkenigignens Strain BRE15M
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Trueba Santiso, Alba María, Wasmund, Kenneth, Soder-Walza, Jesica M., Marco Urrea, Ernest, Adrian, Lorenz, Trueba Santiso, Alba María, Wasmund, Kenneth, Soder-Walza, Jesica M., Marco Urrea, Ernest, and Adrian, Lorenz
- Abstract
Bacteria of the genus Dehalogenimonas respire with vicinally halogenated alkanes via dihaloelimination. We aimed to describe involved proteins and their supermolecular organization. Metagenomic sequencing of a Dehalogenimonas -containing culture resulted in a 1.65 Mbp draft genome of Dehalogenimonas alkenigignens strain BRE15M. It contained 31 full-length reductive dehalogenase homologous genes (rdhA), but only eight had cognate rdhB gene coding for membrane-anchoring proteins. Shotgun proteomics of cells grown with 1,2-dichloropropane as an electron acceptor identified 1152 proteins representing more than 60% of the total proteome. Ten RdhA proteins were detected, including a DcpA ortholog, which was the strongest expressed RdhA. Blue native gel electrophoresis (BNE) demonstrating maximum activity was localized in a protein complex of 146-242 kDa. Protein mass spectrometry revealed the presence of DcpA, its membrane-anchoring protein DcpB, two hydrogen uptake hydrogenase subunits (HupL and HupS), an iron-sulfur protein (HupX), and subunits of a redox protein with a molybdopterin-binding motif (OmeA and OmeB) in the complex. BNE after protein solubilization with different detergent concentrations revealed no evidence for an interaction between the putative respiratory electron input module (HupLS) and the OmeA/OmeB/HupX module. All detected RdhAs comigrated with the organohalide respiration complex. Based on genomic and proteomic analysis, we propose quinone-independent respiration in Dehalogenimonas.
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- 2020
26. Genome sequence, proteome profile, and identification of a multiprotein reductive dehalogenase complex in Dehalogenimonas alkenigignens strain BRE15M
- Author
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Trueba-Santiso, A., Wasmund, K., Soder-Walz, J.M., Marco-Urrea, E., Adrian, Lorenz, Trueba-Santiso, A., Wasmund, K., Soder-Walz, J.M., Marco-Urrea, E., and Adrian, Lorenz
- Abstract
Bacteria of the genus Dehalogenimonas respire with vicinally halogenated alkanes via dihaloelimination. We aimed to describe involved proteins and their supermolecular organization. Metagenomic sequencing of a Dehalogenimonas-containing culture resulted in a 1.65 Mbp draft genome of Dehalogenimonas alkenigignens strain BRE15M. It contained 31 full-length reductive dehalogenase homologous genes (rdhA), but only eight had cognate rdhB gene coding for membrane-anchoring proteins. Shotgun proteomics of cells grown with 1,2-dichloropropane as an electron acceptor identified 1152 proteins representing more than 60% of the total proteome. Ten RdhA proteins were detected, including a DcpA ortholog, which was the strongest expressed RdhA. Blue native gel electrophoresis (BNE) demonstrating maximum activity was localized in a protein complex of 146–242 kDa. Protein mass spectrometry revealed the presence of DcpA, its membrane-anchoring protein DcpB, two hydrogen uptake hydrogenase subunits (HupL and HupS), an iron–sulfur protein (HupX), and subunits of a redox protein with a molybdopterin-binding motif (OmeA and OmeB) in the complex. BNE after protein solubilization with different detergent concentrations revealed no evidence for an interaction between the putative respiratory electron input module (HupLS) and the OmeA/OmeB/HupX module. All detected RdhAs comigrated with the organohalide respiration complex. Based on genomic and proteomic analysis, we propose quinone-independent respiration in Dehalogenimonas.
- Published
- 2020
27. Genome Sequence, Proteome Profile, and Identification of a Multiprotein Reductive Dehalogenase Complex in Dehalogenimonas alkenigignens Strain BRE15M
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Trueba-Santiso, Alba, primary, Wasmund, Kenneth, additional, Soder-Walz, Jesica M., additional, Marco-Urrea, Ernest, additional, and Adrian, Lorenz, additional
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- 2020
- Full Text
- View/download PDF
28. Use of dual element isotope analysis and microcosm studies to determine the origin and potential anaerobic biodegradation of dichloromethane in two multi-contaminated aquifers
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Blázquez-Pallí, Natàlia, primary, Shouakar-Stash, Orfan, additional, Palau, Jordi, additional, Trueba-Santiso, Alba, additional, Varias, Joan, additional, Bosch, Marçal, additional, Soler, Albert, additional, Vicent, Teresa, additional, Marco-Urrea, Ernest, additional, and Rosell, Mònica, additional
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- 2019
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29. Interspecies interaction and effect of co-contaminants in an anaerobic dichloromethane-degrading culture
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David Fernández-Verdejo, Teresa Vicent, Irene Marco-Rius, Jesica M. Soder-Walz, Alba Trueba-Santiso, Oriol Casabella, and Ernest Marco-Urrea
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Environmental Engineering ,Dehalobacterium ,Health, Toxicology and Mutagenesis ,0208 environmental biotechnology ,Population ,02 engineering and technology ,010501 environmental sciences ,01 natural sciences ,complex mixtures ,Formate oxidation ,chemistry.chemical_compound ,Acetobacterium ,Environmental Chemistry ,Formate ,Co-contaminants ,cardiovascular diseases ,Anaerobiosis ,education ,0105 earth and related environmental sciences ,Inhibition ,education.field_of_study ,Methylene Chloride ,Chromatography ,biology ,Public Health, Environmental and Occupational Health ,General Medicine ,General Chemistry ,biology.organism_classification ,musculoskeletal system ,Pollution ,Desulfovibrio ,020801 environmental engineering ,chemistry ,Dichloromethane ,Acetogenesis ,cardiovascular system ,Fermentation ,Bacteria ,Bioremediation - Abstract
An anaerobic stable mixed culture dominated by bacteria belonging to the genera Dehalobacterium, Acetobacterium, Desulfovibrio, and Wolinella was used as a model to study the microbial interactions during DCM degradation. Physiological studies indicated that DCM was degraded in this mixed culture at least in a three-step process: i) fermentation of DCM to acetate and formate, ii) formate oxidation to CO2 and H2, and iii) H2/CO2 reductive acetogenesis. The 16S rRNA gene sequencing of cultures enriched with formate or H2 showed that Desulfovibrio was the dominant population followed by Acetobacterium, but sequences representing Dehalobacterium were only present in cultures amended with DCM. Nuclear magnetic resonance analyses confirmed that acetate produced from 13C-labelled DCM was marked at the methyl ([2–13C]acetate), carboxyl ([1–13C]acetate), and both ([1,2–13C]acetate) positions, which is in accordance to acetate formed by both direct DCM fermentation and H2/CO2 acetogenesis. The inhibitory effect of ten different co-contaminants frequently detected in groundwaters on DCM degradation was also investigated. Complete inhibition of DCM degradation was observed when chloroform, perfluorooctanesulfonic acid, and diuron were added at 838, 400, and 107 μM, respectively. However, the inhibited cultures recovered the DCM degradation capability when transferred to fresh medium without co-contaminants. Findings derived from this work are of significant relevance to provide a better understanding of the synergistic interactions among bacteria to accomplish DCM degradation as well as to predict the effect of co-contaminants during anaerobic DCM bioremediation in groundwater.
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- 2019
30. Dual C–Cl isotopic assessment to elucidate origin, fate, and potential bioremediation treatment of chlorinated methanes at two industrial multi-contaminated aquifers
- Author
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Natàlia Blázquez-Pallí, Orfan Shouakar-Stash, Palau, Jordi, Trueba-Santiso, Alba, Varias, Joan, Marçal Bosch, Gil, Albert Soler, Vicent, Teresa, Marco-Urrea, Ernest, and Mònica Rosell
- Published
- 2019
- Full Text
- View/download PDF
31. Use of C-Cl CSIA to elucidate origin and fate of DCM in complex contaminated field sites
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Blázquez-Pallí, Natàlia, Shouakar-Stash, Orfan, Palau, Jordi, Trueba-Santiso, Alba, Varias, Joan, Bosch, Marçal, Soler, Albert, Vicent, T., Marco-Urrea, Ernest, Rosell, Mònica, Blázquez-Pallí, Natàlia, Shouakar-Stash, Orfan, Palau, Jordi, Trueba-Santiso, Alba, Varias, Joan, Bosch, Marçal, Soler, Albert, Vicent, T., Marco-Urrea, Ernest, and Rosell, Mònica
- Abstract
We used C-Cl dual isotope analysis and microcosm studies for elucidating the origin and fate of the common groundwater pollutant dichloromethane (DCM) in two different multi-contaminant field sites in Catalonia, Spain; where DCM contamination could be the result of direct solvent releases and/or chloroform (CF) transformation. Known commercial solvents isotopic compositions as well as characteristic C-Cl dual isotope slopes from our anaerobic enrichment culture containing Dehalobacterium sp., capable of fermenting DCM, and other bacteria from the literature were used for field data interpretation. © The Authors, published by EDP Sciences, 2019.
- Published
- 2019
32. Effect of by-pass and effluent recirculation on nitrogen removal in hybrid constructed wetlands for domestic and industrial wastewater treatment
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O.G. Gonzalo, A. Trueba-Santiso, I. Ruiz, Verónica Torrijos, and Manuel Soto
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Environmental Engineering ,Denitrification ,Nitrogen ,0208 environmental biotechnology ,chemistry.chemical_element ,02 engineering and technology ,Wastewater ,010501 environmental sciences ,Waste Disposal, Fluid ,01 natural sciences ,Industrial wastewater treatment ,Animal science ,Waste Management and Disposal ,Effluent ,0105 earth and related environmental sciences ,Water Science and Technology ,Civil and Structural Engineering ,Chemistry ,Ecological Modeling ,Environmental engineering ,Nitrification ,Pollution ,Anoxic waters ,020801 environmental engineering ,Wetlands ,Anaerobic exercise - Abstract
Hybrid constructed wetlands (CWs) including subsurface horizontal flow (HF) and vertical flow (VF) steps look for effective nitrification and denitrification through the combination of anaerobic/anoxic and aerobic conditions. Several CW configurations including several configurations of single pass systems (HF + HF, VF + VF, VF + HF), the Bp(VF + HF) arrangement (with feeding by-pass) and the R(HF + VF) system (with effluent recirculation) were tested treating synthetic domestic wastewater. Two HF/VF area ratios (AR) were tested for the VF + HF and Bp(VF + HF) systems. In addition, a R(VF + VF) system was tested for the treatment of a high strength industrial wastewater. The percentage removal of TSS, COD and BOD5 was usually higher than 95% in all systems. The single pass systems showed TN removal below the threshold of 50% and low removal rates (0.6-1.2 g TN/m(2) d), except the VF + VF system which reached 63% and 3.5 g TN/m(2) d removal but only at high loading rates. Bp(VF + HF) systems required by-pass ratios of 40-50% and increased TN removal rates to approximately 50-60% in a sustainable manner. Removal rates depended on the AR value, increasing from 1.6 (AR 2.0) to 5.2 g TN/m(2) d (AR 0.5), both working with synthetic domestic wastewater. On real domestic wastewater the Bp (VF + HF) (AR 0.5 and 30% by-pass) reached 2.5 g TN/m(2) d removal rate. Effluent recirculation significantly improved the TN removal efficiency and rate. The R(HF + VF) system showed stable TN removals of approximately 80% at loading rates ranging from 2 to 8 g TN/m(2) d. High TN removal rates (up to 73% TN and 8.4 g TN/m(2) d) were also obtained for the R(VF + VF) system treating industrial wastewater.
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- 2016
33. Enrichment and characterization of anaerobic bacteria degrading organohalide compounds
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Trueba Santiso, Alba María, Marco Urrea, Ernest, Vicent i Huguet, Teresa, Martín González, Lucía, and Universitat Autònoma de Barcelona. Departament d'Enginyeria Química, Biològica i Ambiental
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Anaerobic ,Bioremediación ,Organohalogenat ,Organohalogen ,Tecnologies ,Anaerobia ,Bioremediació ,Anaerobi ,Organohalogenados ,Bioremediation - Abstract
La freqüent contaminació d’aigua subterrània per compostos organohalogenats és un greu problema degut als riscs humans i ecològics que se’n deriven. La bioremediació és un tècnica sostenible que permet superar algunes de les limitacions que presenten els tractaments fisicoquímics. En aquest estudi ens proposem obtenir i caracteritzar cultius que contenen bacteris anaerobis capaços de degradar compostos organohalogenats ambientalment perillosos i que es puguin aplicar per a la bioremediació d’aqüífers in situ. En treballs previs realitzats al nostre laboratori es va obtenir un cultiu enriquit que contenia un bacteri dehalorespirador del gènere Dehalogenimonas a partir de sediments de la desembocadura del riu Besòs (Barcelona) que degrada alcans amb halògens situats en carbons adjacents. En aquesta tesis, s’ha identificat la dehalogenasa reductora (RDasa) d’aquesta Dehalogenimonas implicada en la conversió de dibromur d’etilè (EDB) al compost innocu etilè combinant tècniques de proteòmica basades en gels d’electroforesis, tests enzimàtics i nano-cromatografia líquida acoblada a espectrometria de masses (nLC-MS/MS). Aquesta RDasa es va designar com a EdbA. EdbA és la primera RDasa identificada entre les espècies d’aquest gènere bacterià que catalitza una reacció de debromació. A més, és la primera RDasa que s’ha demostrat funcional i que no té cap subunitat B de fixació a la membrana citoplasmàtica codificada de forma adjacent en el seu genoma. Addicionalment, s’ha detectat un enzim ortolog a l’enzim responsable de la degradació de 1,2-diclorpropà a propé (DcpA) com a única RDasa en cultius que transformen 1,2,3-triclorpropà a clorur d’alil mitjançant la combinació de tècniques d’ultracentrifugació, gels d’electroforesis i nLC-MS/MS. Aquesta DcpA es va detectar en la fracció de la membrana tal i com predeien les eines bioinformàtiques emprades. El mecanisme pel qual aquestes dues RDases identificades es fixen a les membranes és encara desconegut. En aquesta treball s’ha obtingut un segon consorci bacterià estable provinent de llots d’una planta de tractament d’aigües residuals industrials i aplicant estratègies de d’enriquiment del cultiu i tècniques de dilució fins a l’extinció. Aquest cultiu fermenta diclorometà (DCM) i dibromometà (DBM) en acetat i format. S’ha demostrat que el bacteri responsable de la fermentació d’aquests dihalometans és un Dehalobacterium i s’ha procedit al seu aïllament. Tanmateix, les interaccions sinèrgiques entre les espècies del consorci han impedit el seu aïllament. Mitjançant la selecció de colònies en cultius semi sòlids, canvis en la composició del medi i l’ús de antibiòtics, s’ha assolit un cultiu on l’abundància de Dehalobacterium és del 67%. L´acompanyen bacteris dels gèneres Acetobacterium i Desulfovibrio, tal i com revelen els anàlisis de genoteques. El fraccionament dels isòtops de carboni durant la fermentació de DCM per aquest cultiu s’ha determinat mitjançant l’anàlisi d’isòtops estables de compostos específics (CSIA). El valor obtingut de -27 ± 2‰ difereix del prèviament publicat per una soca de Dehalobacter (-15.5 ± 1.5‰) que també fermentava DCM. Aquests valors són significativament diferent dels obtinguts per bacteris metilotròfics degradadors de DCM (que varien de -45 a -61‰) i podria permetre la distinció entre vies de degradació de DCM en treballs de bioremediació in situ. Finalment, s’ha demostrat que la presència de co-contaminants que es detecten freqüentment amb DCM, tals com tricloroetilè (TCE), 1,2-dicloroetà (1,2-DCA), cis-dicloroetilè (cis-DCE), 1,1,2-tricloroetà (1,1,2-TCA), àcid perfluorooctanoic (PFOA) i 3,4-dicloroanilina (3,4-DCA) no provoca una inhibició significativa en la degradació de DCM pel cultiu amb Dehalobacterium a les concentracions testades. La concentració de cloroform de 100 mg/L provoca una total inhibició. De manera similar, la presència de 200 mg/L d’àcid perfluorooctanosulfonic (PFOS) i ≥ 25 mg/L de diuron provoquen una inhibició severa, impedint la degradació completa de DCM. Tanmateix, l’activitat degradadora de DCM es recupera quan els cultius inhibits es transfereixen a medi fresc sense co-contaminants., La frecuente contaminación de las aguas subterráneas por compuestos organohalogenados es un grave problema ambiental debido a los riesgos ecológicos y para la salud humana de ella derivados. La bioremediación es una tecnología sostenible que evita algunos inconvenientes que presentan los tratamientos físico-químicos. En este estudio nos proponemos obtener y caracterizar cultivos que contengan bacterias anaerobias que degraden compuestos organohalogenados ambientalmente peligrosos con potencial para la bioremediación in situ de aguas subterráneas. En trabajos previos de nuestro grupo de investigación, se obtuvo un cultivo enriquecido en bacterias del género Dehalogenimonas procedente de sedimentos del estuario del río Besós (Barcelona) que degrada alcanos con halógenos situados en carbonos adyacentes. En esta tesis se ha identificado la dehalogenasa reductora (RDasa) de esta cepa de Dehalogenimonas implicada en la conversión del dibromuro de etileno (EDB) al compuesto inocuo eteno combinando técnicas de proteómica basadas en geles de electroforesis, ensayos enzimáticos y nano-cromatografía líquida de alta resolución (nLC-MS/MS). Esta RDasa es designada EdbA, y constituye la primera RDasa identificada en este género bacteriano que cataliza una reacción de debromación. Además, es también la primera RDasa en ser demostrada funcional sin una subunidad B de anclaje a la membrana codificada de forma adyacente en el genoma. Adicionalmente, se ha detectado una única RDasa en cultivos que transforman 1,2,3-tricloropropano a cloruro de alilo combinando técnicas de ultracentrifugación, geles de electroforesis y nLC-MS/MS. Esta enzima ortóloga a DcpA, la responsable de la degradación de 1,2-dicloropropano a propeno, ha sido detectada en la fracción proteica de membrana, lo cual concuerta con las predicciones realizadas mediante herramientas bioinformáticas. El mecanismo por el cual EdbA y esta DcpA se anclan a la membrana citoplasmática es desconocido, atribuyéndose a proteínas todavía no descritas. En este trabajo se ha obtenido un segundo consorcio bacteriano estable a partir de lodos de una planta de tratamiento de aguas residuales industriales aplicando técnicas de cultivo de enriquecimiento y dilución por extinción. Este cultivo fermenta diclorometano (DCM) y dibromometano (DBM) a acetato y formato. Se ha demostrado que la bacteria responsable de la fermentación pertenece al género Dehalobacterium, y se ha procedido a su aislamiento. Sin embargo, las interacciones sinérgicas existentes entre las especies del consorcio han impedido obtener un cultivo puro. Seleccionando colonias en medio de cultivo semisólido, aplicando antibióticos y cambios en la composición del medio, se ha obtenido una abundancia relativa de Dehalobacterium del 67%. Le acompañan bacterias de los géneros Acetobacterium y Desulfovibrio, tal y como se detectó mediante análisis de genotecas. El fraccionamiento isotópico del carbono durante la fermentación del DCM por este cultivo fue determinado mediante análisis de isótopos estables de compuestos específicos (CSIA). El valor obtenido, -27 ± 2‰, difiere del publicado previamente para una cepa de Dehalobacter que también fermenta el DCM (-15.5 ± 1.5‰). Estos valores son significativamente diferentes de los obtenidos con bacterias metilotróficas degradadoras de DCM (-45 a -61‰), y podrían permitir diferenciar vías de degradación de DCM en trabajos de bioremediación in situ. Finalmente, se ha demostrado que la presencia de co-contaminantes que se detectan frecuentemente con el DCM, como el tricloroetileno (TCE), 1,2-dicloroetano (1,2-DCA), cis-dicloroetileno (cis-DCE), 1,1,2-tricloroetano (1,1,2-TCA), ácido perfluorooctanoico (PFOA) y 3,4-dicloroanilina (3,4-DCA) no provocan una inhibición significativa en la degradación de DCM por parte del cultivo de Dehalobacterium, a las concentraciones estudiadas. Una concentración de cloroformo de 100 mg/L provoca una inhibición total. De manera similar, 200 mg/L de sulfonato de perfluoroctano (PFOS), y ≥ 25 mg/L de diuron provocan una inhibición severa, impidiendo la degradación completa del DCM. Sin embargo, la actividad degradadora de DCM se recupera cuando los cultivos inhibidos se transfieren a medio libre de co-contaminantes., The widespread groundwater contamination by organohalide compounds is of a major concern due to the human and ecological risks derived from it. Bioremediation is a sustainable technology that overcomes some limitations of the physical-chemical remediation techniques on these water bodies. In this study, we aimed to obtain and characterize cultures containing anaerobic bacteria capable of degrading organohalide compounds of environmental concern with potential for in situ groundwater bioremediation. In previous work carried out in our laboratory a highly enriched culture containing organohalide-respiring bacteria from the genus Dehalogenimonas degrading vicinally halogenated alkanes was obtained from sediments of the river Besós estuary (Barcelona). In this thesis, the reductive dehalogenase (RDase) from this Dehalogenimonas strain responsible for the catalysis of ethylene dibromide (EDB) to the innocuous ethene was identified combining gel-based proteomic techniques, specific enzymatic tests and nano-scale liquid chromatography tandem mass spectrometry (nLC-MS/MS). This RDase is therefore designated as EdbA, for ethylene dibromide RDase subunit A. EdbA is the first RDase identified for debrominating catalytic activity among species of this genus. Moreover, it is the first RDase shown to be functional for respiration without an adjacent membrane-anchoring subunit B encoded on the genome. Additionally, combining ultracentrifugation, gel electrophoresis and nLC-MS/MS, an orthologous enzyme of the dichloropropane-to-propene RDase (DcpA) was the only RDase detected in 1,2,3-trichloropropane-to-allyl chloride dehalogenating cultures. This DcpA was detected in the membrane fraction of the crude protein extract, in accordance to its predicted subcellular localization by bioinformatics tools and it is also not co-localised with an rdhB gene. The membrane-anchoring mechanisms of these RDases remains not known and may rely in yet-unidentified proteins. A second stable bacterial consortium was obtained in the present work from slurry samples of an industrial wastewater treatment plant with a combination of enrichment culture strategies and the dilution-to-extinction technique. This culture was demonstrated to ferment dichloromethane (DCM) and dibromomethane (DBM) into acetate and formate. The Dehalobacterium sp. present in this culture was shown to be the responsible for the dihalomethanes fermentation, and the isolation of this strain was attempted. However, the synergic interactions existing among the different accompanying species present in the bacterial consortia impeded the isolation. Despite a pure culture was not achieved via picking up colonies from semisolid agar cultures, changes in the medium composition, and the application of selected antibiotics, a final relative abundance of Dehalobacterium sp. of 67 % was attained. As determined by clone library analysis, bacteria from the genera Acetobacterium and Desulfovibrio remained present in the culture. The carbon isotope fractionation during DCM fermentation by this culture was determined by compound-specific stable isotope analysis (CSIA). The value obtained was -27 ± 2‰ and differs from the previously published value of -15.5 ± 1.5‰ of a Dehalobacter sp. performing also DCM fermentation. These values are yet significantly different from those reported for facultative methylotrophic bacteria degrading DCM (ranging from -45 to -61‰), and this would allow for further differentiation of these degradation pathways during in situ bioremediation works. Finally, the potential inhibitory effect of selected frequent groundwater co-contaminants over DCM degradation by the Dehalobacterium-containing culture was assessed for further in situ bioremediation applications. Trichloroethylene (TCE), 1,2-dichloroethane (1,2-DCA), cis-dichloroethylene (cis-DCE), 1,1,2-trichloroethane (1,1,2-TCA), perfluorooctanoic acid (PFOA), and 3,4-dichloroaniline (3,4-DCA) did not show significant inhibitory effects at the concentrations tested. Differently, a total inhibition was caused with a chloroform concentration of 100 mg/L. Also, the presence of 200 mg/L of perfluorooctanesulfonic acid (PFOS), as well as concentrations higher than 25 mg/L of the pesticide diuron caused a severe inhibitory effect, preventing the full depletion of DCM. Nevertheless, DCM degrading activity was recovered when inhibited cultures were transferred to co-contaminant free medium.
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- 2018
34. Genome Sequence, Proteome Profile, and Identification of a Multiprotein Reductive Dehalogenase Complex in Dehalogenimonas alkenigignens Strain BRE15M.
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Trueba-Santiso, Alba, Wasmund, Kenneth, Soder-Walz, Jesica M., Marco-Urrea, Ernest, and Adrian, Lorenz
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- 2021
- Full Text
- View/download PDF
35. Use of C–Cl CSIA to elucidate origin and fate of DCM in complex contaminated field sites
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Orfan Shouakar-Stash, Alba Trueba-Santiso, Joan Varias, Teresa Vicent, Mònica Rosell, Ernest Marco-Urrea, Albert Soler, Marçal Bosch, Natàlia Blázquez-Pallí, and Jordi Palau
- Subjects
lcsh:GE1-350 ,0301 basic medicine ,Research groups ,European Regional Development Fund ,010501 environmental sciences ,01 natural sciences ,Trichloroethylene ,03 medical and health sciences ,030104 developmental biology ,Political science ,Organohalide respiration ,Dechlorination ,media_common.cataloged_instance ,cardiovascular diseases ,European union ,Humanities ,lcsh:Environmental sciences ,0105 earth and related environmental sciences ,media_common - Abstract
We used C-Cl dual isotope analysis and microcosm studies for elucidating the origin and fate of the common groundwater pollutant dichloromethane (DCM) in two different multi-contaminant field sites in Catalonia, Spain; where DCM contamination could be the result of direct solvent releases and/or chloroform (CF) transformation. Known commercial solvents isotopic compositions as well as characteristic C-Cl dual isotope slopes from our anaerobic enrichment culture containing Dehalobacterium sp., capable of fermenting DCM, and other bacteria from the literature were used for field data interpretation. © The Authors, published by EDP Sciences, 2019., Acknowledgements. This research has been supported by the Spanish State Research Agency (CTM2016-75587-C2-1-R and CGL2017-87216-C4-1-R projects) co-financed by the European Union through the European Regional Development Fund (ERDF). This work was also partly supported by the Generalitat de Catalunya through the consolidate research groups (2017SGR-14 and 2017SGR-1733) and N. Blázquez-Pallí Industrial Doctorate grant (2015-DI-064). M. Rosell acknowledges a Ramón y Cajal contract (RYC-2012-11920) from MINECO. The Departament d’Enginyeria Química, Biològica i Ambiental of the Universitat Autònoma de Barcelona is a member of the Xarxa de Referència en Biotecnologia de la Generalitat de Catalunya. We thank CCiT-UB for excellent technical assistance, and Roger Puig, Diana Rodríguez-Fernández, Adam Mihailov, Nart Bakir, Irem Albak Martin, Jacqueline Whiteside, and Sylwia Lyda for their invaluable contribution to this research.
- Published
- 2019
36. Molecular and carbon isotopic characterization of an anaerobic stable enrichment culture containing Dehalobacterium sp. during dichloromethane fermentation
- Author
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Alba Trueba-Santiso, Teresa Vicent, Eloi Parladé, Ernest Marco-Urrea, Lucía Martín-González, Mònica Rosell, Maira Martínez-Alonso, Núria Gaju, Siti Hatijah Mortan, and Marc Llirós
- Subjects
0301 basic medicine ,Environmental Engineering ,030106 microbiology ,Fractionation ,Dehalobacter ,010501 environmental sciences ,Wastewater ,01 natural sciences ,Enrichment culture ,03 medical and health sciences ,Acetobacterium ,RNA, Ribosomal, 16S ,Environmental Chemistry ,cardiovascular diseases ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Carbon Isotopes ,Methylene Chloride ,Chromatography ,biology ,Biodegradation ,biology.organism_classification ,Pollution ,Desulfovibrio ,Biodegradation, Environmental ,Peptococcaceae ,Fermentation ,Bacteria - Abstract
Biodegradation of dichloromethane (DCM) under reducing conditions is of major concern due to its widespread detection in contaminated groundwaters. Here, we report an anaerobic enrichment culture derived from a membrane bioreactor operating in an industrial wastewater treatment plant, capable of fermenting DCM and the brominated analogue dibromomethane (DBM). Comparative analysis of bacterial 16S rDNA-DGGE profiles from fresh liquid medium inoculated with single colonies picked from serial dilution-to-extinction agar vials showed that cultures degrading DCM contained a predominant band belonging to Dehalobacterium , however this band was absent in cultures unable to degrade DCM. Analysis of the microbial composition of the enrichment by bacterial 16S rRNA gene amplicon paired-end sequencing confirmed the presence of Dehalobacterium together with three additional phylotypes belonging to Acetobacterium , Desulfovibrio , and Wolinella , representing all four operational taxonomic units > 99.9% of the retrieved sequences. The carbon isotopic fractionation (e) determined for DCM degradation in this culture was − 27 ± 2‰. This value differs from the e previously reported for the DCM-fermentative bacteria Dehalobacter (− 15.5 ± 1.5‰) but they are both significantly different from those reported for facultative methylotrophic organisms (ranging from − 45 to − 61‰). This significant difference in the e allows differentiating between hydrolytic transformation of DCM via glutathione-dependent dehalogenases and fermentation pathway. Capsule The carbon isotopic fractionation of dichloromethane by an enriched Dehalobacterium -containing culture has significant potential to monitor biodegradation of DCM in groundwaters.
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- 2016
37. Genome Sequence, Proteome Profile, and Identification of a Multiprotein Reductive Dehalogenase Complex in Dehalogenimonas alkenigignensStrain BRE15M
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Trueba-Santiso, Alba, Wasmund, Kenneth, Soder-Walz, Jesica M., Marco-Urrea, Ernest, and Adrian, Lorenz
- Abstract
Bacteria of the genus Dehalogenimonasrespire with vicinally halogenated alkanes via dihaloelimination. We aimed to describe involved proteins and their supermolecular organization. Metagenomic sequencing of a Dehalogenimonas-containing culture resulted in a 1.65 Mbp draft genome of Dehalogenimonas alkenigignensstrain BRE15M. It contained 31 full-length reductive dehalogenase homologous genes (rdhA), but only eight had cognate rdhBgene coding for membrane-anchoring proteins. Shotgun proteomics of cells grown with 1,2-dichloropropane as an electron acceptor identified 1152 proteins representing more than 60% of the total proteome. Ten RdhA proteins were detected, including a DcpA ortholog, which was the strongest expressed RdhA. Blue native gel electrophoresis (BNE) demonstrating maximum activity was localized in a protein complex of 146–242 kDa. Protein mass spectrometry revealed the presence of DcpA, its membrane-anchoring protein DcpB, two hydrogen uptake hydrogenase subunits (HupL and HupS), an iron–sulfur protein (HupX), and subunits of a redox protein with a molybdopterin-binding motif (OmeA and OmeB) in the complex. BNE after protein solubilization with different detergent concentrations revealed no evidence for an interaction between the putative respiratory electron input module (HupLS) and the OmeA/OmeB/HupX module. All detected RdhAs comigrated with the organohalide respiration complex. Based on genomic and proteomic analysis, we propose quinone-independent respiration in Dehalogenimonas.
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- 2021
- Full Text
- View/download PDF
38. Molecular and carbon isotopic characterization of an anaerobic stable enrichment culture containing Dehalobacterium sp. during dichloromethane fermentation
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Trueba-Santiso, Alba, primary, Parladé, Eloi, additional, Rosell, Mònica, additional, Lliros, Marc, additional, Mortan, Siti Hatijah, additional, Martínez-Alonso, Maira, additional, Gaju, Nuria, additional, Martín-González, Lucía, additional, Vicent, Teresa, additional, and Marco-Urrea, Ernest, additional
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- 2017
- Full Text
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39. Operación de reactores biológicos para el tratamiento del agua
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Trueba Santiso, Alba María, Veiga Barbazán, M. Carmen, and Universidade da Coruña. Facultade de Ciencias
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Aguas residuales ,Depuración ,Reactores biológicos - Abstract
Traballo fin de mestrado (UDC.CIE). Biotecnoloxía avanzada. Curso 2011/2012
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- 2012
40. Operación de reactores biológicos para el tratamiento del agua
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Universidade da Coruña. Facultade de Ciencias, Trueba Santiso, Alba María, Universidade da Coruña. Facultade de Ciencias, and Trueba Santiso, Alba María
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- 2012
41. Interspecies interaction and effect of co-contaminants in an anaerobic dichloromethane-degrading culture.
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Trueba-Santiso, Alba, Fernández-Verdejo, David, Marco-Rius, Irene, Soder-Walz, Jesica M., Casabella, Oriol, Vicent, Teresa, and Marco-Urrea, Ernest
- Subjects
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PERFLUOROOCTANOIC acid , *PERFLUOROOCTANE sulfonate , *ANAEROBIC metabolism , *NUCLEAR magnetic resonance , *DICHLOROMETHANE , *BACTERIAL cultures , *DIURON - Abstract
An anaerobic stable mixed culture dominated by bacteria belonging to the genera Dehalobacterium , Acetobacterium , Desulfovibrio , and Wolinella was used as a model to study the microbial interactions during DCM degradation. Physiological studies indicated that DCM was degraded in this mixed culture at least in a three-step process: i) fermentation of DCM to acetate and formate, ii) formate oxidation to CO 2 and H 2 , and iii) H 2 /CO 2 reductive acetogenesis. The 16S rRNA gene sequencing of cultures enriched with formate or H 2 showed that Desulfovibrio was the dominant population followed by Acetobacterium , but sequences representing Dehalobacterium were only present in cultures amended with DCM. Nuclear magnetic resonance analyses confirmed that acetate produced from 13C-labelled DCM was marked at the methyl ([2–13C]acetate), carboxyl ([1–13C]acetate), and both ([1,2–13C]acetate) positions, which is in accordance to acetate formed by both direct DCM fermentation and H 2 /CO 2 acetogenesis. The inhibitory effect of ten different co-contaminants frequently detected in groundwaters on DCM degradation was also investigated. Complete inhibition of DCM degradation was observed when chloroform, perfluorooctanesulfonic acid, and diuron were added at 838, 400, and 107 μM, respectively. However, the inhibited cultures recovered the DCM degradation capability when transferred to fresh medium without co-contaminants. Findings derived from this work are of significant relevance to provide a better understanding of the synergistic interactions among bacteria to accomplish DCM degradation as well as to predict the effect of co-contaminants during anaerobic DCM bioremediation in groundwater. Image 1 • Several bacteria are involved in the anaerobic metabolism of dichloromethane (DCM). • Interspecies H 2 transfer observed in the form of acetogenesis in DCM degradation. • Inhibition of DCM degradation by chloroform, perfluorooctanoic acid and diuron. • Inhibited bacterial cultures can degrade DCM upon removal of the inhibitor. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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