21 results on '"Trueb J"'
Search Results
2. Interferometric Reflectance Imaging Sensor using Si-based Microfluidics
- Author
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Ünlü, M. Selim, primary, Trueb, J. T., additional, Needham, J., additional, Yurdakul, C., additional, Sevenler, D. D., additional, Kanik, F. Ekiz, additional, Ozkumur, A. Yalcin, additional, Ünlü, N. Lortlar, additional, and Geib, M. T., additional
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- 2018
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3. Montage rapide d'un grand pont
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Trueb, J.
- Published
- 1938
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4. IRRADIATION CAPSULES FOR DRAGON FUEL ELEMENTS
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Trueb, J
- Published
- 1962
5. Observational pilot study of multi-wavelength wearable light dosimetry for erythropoietic protoporphyria.
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Dickey AK, Berkovich J, Leaf RK, Jiang PY, Lopez-Galmiche G, Rebeiz L, Wheeden K, Kochevar I, Savage W, Zhao S, Campisi E, Heo SY, Trueb J, LaRochelle EPM, Rogers J, Banks A, and Chang JK
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- Humans, Pilot Projects, Prospective Studies, Male, Female, Adult, Middle Aged, Light, Radiation Dosimeters, Ultraviolet Rays adverse effects, Protoporphyria, Erythropoietic diagnosis, Wearable Electronic Devices
- Abstract
Background: Erythropoietic protoporphyria (EPP) causes painful light sensitivity, limiting quality of life. Our objective was to develop and validate a wearable light exposure device and correlate measurements with light sensitivity in EPP to predict and prevent symptoms., Methods: A wearable light dosimeter was developed to capture light doses of UVA, blue, and red wavelengths. A prospective observational pilot study was performed in which five EPP patients wore two light dosimeters for 3 weeks, one as a watch, and one as a shirt clip., Results: Standard deviation (SD) increases from the mean in the daily blue light dose increased the odds ratio (OR) for symptom risk more than the self-reported outdoor time (OR 2.76 vs. 2.38) or other wavelengths, and a one SD increase from the mean in the daily blue light wristband device dose increased the OR for symptom risk more than the daily blue light shirt clip (OR 2.45 vs. 1.62). The area under the receiver operator curve for the blue light wristband dose was 0.78, suggesting 78% predictive accuracy., Conclusion: These data demonstrate that wearable blue light dosimetry worn as a wristband is a promising method for measuring light exposure and predicting and preventing symptoms in EPP., (© 2024 the International Society of Dermatology.)
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- 2024
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6. An autonomous implantable device for the prevention of death from opioid overdose.
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Ciatti JL, Vázquez-Guardado A, Brings VE, Park J, Ruyle B, Ober RA, McLuckie AJ, Talcott MR, Carter EA, Burrell AR, Sponenburg RA, Trueb J, Gupta P, Kim J, Avila R, Seong M, Slivicki RA, Kaplan MA, Villalpando-Hernandez B, Massaly N, Montana MC, Pet M, Huang Y, Morón JA, Gereau RW 4th, and Rogers JA
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- Humans, Animals, Analgesics, Opioid, Narcotic Antagonists, Prostheses and Implants, Drug Overdose mortality, Male, Opiate Overdose mortality, Naloxone
- Abstract
Opioid overdose accounts for nearly 75,000 deaths per year in the United States, now a leading cause of mortality among young people aged 18 to 45 years. At overdose levels, opioid-induced respiratory depression becomes fatal without the administration of naloxone within minutes. Currently, overdose survival relies on bystander intervention, requiring a nearby person to find the overdosed individual and have immediate access to naloxone to administer. To circumvent the bystander requirement, we developed the Naloximeter: a class of life-saving implantable devices that autonomously detect and treat overdose while simultaneously contacting first responders. We present three Naloximeter platforms, for fundamental research and clinical translation, all equipped with optical sensors, drug delivery mechanisms, and a supporting ecosystem of technology to counteract opioid-induced respiratory depression. In small and large animal studies, the Naloximeter rescues from otherwise fatal opioid overdose within minutes. This work introduces life-changing, clinically translatable technologies that can broadly benefit a susceptible population recovering from opioid use disorder.
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- 2024
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7. Development of a Miniaturized Mechanoacoustic Sensor for Continuous, Objective Cough Detection, Characterization and Physiologic Monitoring in Children With Cystic Fibrosis.
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Tzavelis A, Palla J, Mathur R, Bedford B, Wu YH, Trueb J, Shin HS, Arafa H, Jeong H, Ouyang W, Kwak JY, Chiang J, Schulz S, Carter TM, Rangaraj V, Katsaggelos AK, McColley SA, and Rogers JA
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- Humans, Child, Male, Female, Pilot Projects, Adolescent, Monitoring, Physiologic methods, Monitoring, Physiologic instrumentation, Equipment Design, Deep Learning, Child, Preschool, Cystic Fibrosis physiopathology, Cough physiopathology, Cough diagnosis, Signal Processing, Computer-Assisted
- Abstract
Cough is an important symptom in children with acute and chronic respiratory disease. Daily cough is common in Cystic Fibrosis (CF) and increased cough is a symptom of pulmonary exacerbation. To date, cough assessment is primarily subjective in clinical practice and research. Attempts to develop objective, automatic cough counting tools have faced reliability issues in noisy environments and practical barriers limiting long-term use. This single-center pilot study evaluated usability, acceptability and performance of a mechanoacoustic sensor (MAS), previously used for cough classification in adults, in 36 children with CF over brief and multi-day periods in four cohorts. Children whose health was at baseline and who had symptoms of pulmonary exacerbation were included. We trained, validated, and deployed custom deep learning algorithms for accurate cough detection and classification from other vocalization or artifacts with an overall area under the receiver-operator characteristic curve (AUROC) of 0.96 and average precision (AP) of 0.93. Child and parent feedback led to a redesign of the MAS towards a smaller, more discreet device acceptable for daily use in children. Additional improvements optimized power efficiency and data management. The MAS's ability to objectively measure cough and other physiologic signals across clinic, hospital, and home settings is demonstrated, particularly aided by an AUROC of 0.97 and AP of 0.96 for motion artifact rejection. Examples of cough frequency and physiologic parameter correlations with participant-reported outcomes and clinical measurements for individual patients are presented. The MAS is a promising tool in objective longitudinal evaluation of cough in children with CF.
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- 2024
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8. An implantable device for wireless monitoring of diverse physio-behavioral characteristics in freely behaving small animals and interacting groups.
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Ouyang W, Kilner KJ, Xavier RMP, Liu Y, Lu Y, Feller SM, Pitts KM, Wu M, Ausra J, Jones I, Wu Y, Luan H, Trueb J, Higbee-Dempsey EM, Stepien I, Ghoreishi-Haack N, Haney CR, Li H, Kozorovitskiy Y, Heshmati M, Banks AR, Golden SA, Good CH, and Rogers JA
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- Animals, Mice, Heart Rate physiology, Male, Prostheses and Implants, Respiratory Rate physiology, Monitoring, Physiologic methods, Monitoring, Physiologic instrumentation, Algorithms, Wireless Technology, Behavior, Animal physiology, Optogenetics methods
- Abstract
Comprehensive, continuous quantitative monitoring of intricately orchestrated physiological processes and behavioral states in living organisms can yield essential data for elucidating the function of neural circuits under healthy and diseased conditions, for defining the effects of potential drugs and treatments, and for tracking disease progression and recovery. Here, we report a wireless, battery-free implantable device and a set of associated algorithms that enable continuous, multiparametric physio-behavioral monitoring in freely behaving small animals and interacting groups. Through advanced analytics approaches applied to mechano-acoustic signals of diverse body processes, the device yields heart rate, respiratory rate, physical activity, temperature, and behavioral states. Demonstrations in pharmacological, locomotor, and acute and social stress tests and in optogenetic studies offer unique insights into the coordination of physio-behavioral characteristics associated with healthy and perturbed states. This technology has broad utility in neuroscience, physiology, behavior, and other areas that rely on studies of freely moving, small animal models., Competing Interests: Declaration of interests J.A.R. and A.R.B. are co-founders of a company, NeuroLux Inc., that has potential commercial interest in this technology. C.H.G., K.J.K., R.M.P.X., S.M.F., J.A., and I.J. are employees of NeuroLux Inc., (Copyright © 2024 Elsevier Inc. All rights reserved.)
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- 2024
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9. Wireless broadband acousto-mechanical sensing system for continuous physiological monitoring.
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Yoo JY, Oh S, Shalish W, Maeng WY, Cerier E, Jeanne E, Chung MK, Lv S, Wu Y, Yoo S, Tzavelis A, Trueb J, Park M, Jeong H, Okunzuwa E, Smilkova S, Kim G, Kim J, Chung G, Park Y, Banks A, Xu S, Sant'Anna GM, Weese-Mayer DE, Bharat A, and Rogers JA
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- Infant, Newborn, Humans, Monitoring, Physiologic, Intensive Care Units, Neonatal
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The human body generates various forms of subtle, broadband acousto-mechanical signals that contain information on cardiorespiratory and gastrointestinal health with potential application for continuous physiological monitoring. Existing device options, ranging from digital stethoscopes to inertial measurement units, offer useful capabilities but have disadvantages such as restricted measurement locations that prevent continuous, longitudinal tracking and that constrain their use to controlled environments. Here we present a wireless, broadband acousto-mechanical sensing network that circumvents these limitations and provides information on processes including slow movements within the body, digestive activity, respiratory sounds and cardiac cycles, all with clinical grade accuracy and independent of artifacts from ambient sounds. This system can also perform spatiotemporal mapping of the dynamics of gastrointestinal processes and airflow into and out of the lungs. To demonstrate the capabilities of this system we used it to monitor constrained respiratory airflow and intestinal motility in neonates in the neonatal intensive care unit (n = 15), and to assess regional lung function in patients undergoing thoracic surgery (n = 55). This broadband acousto-mechanical sensing system holds the potential to help mitigate cardiorespiratory instability and manage disease progression in patients through continuous monitoring of physiological signals, in both the clinical and nonclinical setting., (© 2023. The Author(s), under exclusive licence to Springer Nature America, Inc.)
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- 2023
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10. A wireless and battery-less implant for multimodal closed-loop neuromodulation in small animals.
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Ouyang W, Lu W, Zhang Y, Liu Y, Kim JU, Shen H, Wu Y, Luan H, Kilner K, Lee SP, Lu Y, Yang Y, Wang J, Yu Y, Wegener AJ, Moreno JA, Xie Z, Wu Y, Won SM, Kwon K, Wu C, Bai W, Guo H, Liu TL, Bai H, Monti G, Zhu J, Madhvapathy SR, Trueb J, Stanslaski M, Higbee-Dempsey EM, Stepien I, Ghoreishi-Haack N, Haney CR, Kim TI, Huang Y, Ghaffari R, Banks AR, Jhou TC, Good CH, and Rogers JA
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- Animals, Optogenetics methods, Optogenetics instrumentation, Body Temperature physiology, Male, Electric Power Supplies, Sleep physiology, Wakefulness physiology, Rats, Epilepsy therapy, Prostheses and Implants, Wireless Technology instrumentation, Electroencephalography instrumentation, Electroencephalography methods, Electromyography methods
- Abstract
Fully implantable wireless systems for the recording and modulation of neural circuits that do not require physical tethers or batteries allow for studies that demand the use of unconstrained and freely behaving animals in isolation or in social groups. Moreover, feedback-control algorithms that can be executed within such devices without the need for remote computing eliminate virtual tethers and any associated latencies. Here we report a wireless and battery-less technology of this type, implanted subdermally along the back of freely moving small animals, for the autonomous recording of electroencephalograms, electromyograms and body temperature, and for closed-loop neuromodulation via optogenetics and pharmacology. The device incorporates a system-on-a-chip with Bluetooth Low Energy for data transmission and a compressed deep-learning module for autonomous operation, that offers neurorecording capabilities matching those of gold-standard wired systems. We also show the use of the implant in studies of sleep-wake regulation and for the programmable closed-loop pharmacological suppression of epileptic seizures via feedback from electroencephalography. The technology can support a broader range of applications in neuroscience and in biomedical research with small animals., (© 2023. The Author(s), under exclusive licence to Springer Nature Limited.)
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- 2023
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11. Synchronized wearables for the detection of haemodynamic states via electrocardiography and multispectral photoplethysmography.
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Franklin D, Tzavelis A, Lee JY, Chung HU, Trueb J, Arafa H, Kwak SS, Huang I, Liu Y, Rathod M, Wu J, Liu H, Wu C, Pandit JA, Ahmad FS, McCarthy PM, and Rogers JA
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- Humans, Hemodynamics physiology, Blood Pressure physiology, Electrocardiography, Photoplethysmography, Wearable Electronic Devices
- Abstract
Cardiovascular health is typically monitored by measuring blood pressure. Here we describe a wireless on-skin system consisting of synchronized sensors for chest electrocardiography and peripheral multispectral photoplethysmography for the continuous monitoring of metrics related to vascular resistance, cardiac output and blood-pressure regulation. We used data from the sensors to train a support-vector-machine model for the classification of haemodynamic states (resulting from exposure to heat or cold, physical exercise, breath holding, performing the Valsalva manoeuvre or from vasopressor administration during post-operative hypotension) that independently affect blood pressure, cardiac output and vascular resistance. The model classified the haemodynamic states on the basis of an unseen subset of sensor data for 10 healthy individuals, 20 patients with hypertension undergoing haemodynamic stimuli and 15 patients recovering from cardiac surgery, with an average precision of 0.878 and an overall area under the receiver operating characteristic curve of 0.958. The multinodal sensor system may provide clinically actionable insights into haemodynamic states for use in the management of cardiovascular disease., (© 2023. The Author(s), under exclusive licence to Springer Nature Limited.)
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- 2023
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12. Real-Time UV Measurement With a Sun Protection System for Warning Young Adults About Sunburn: Prospective Cohort Study.
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Robinson JK, Patel S, Heo SY, Gray E, Lim J, Kwon K, Christiansen Z, Model J, Trueb J, Banks A, Kwasny M, and Rogers JA
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- Adolescent, Adult, Health Behavior, Humans, Pandemics, Prospective Studies, SARS-CoV-2, Sunscreening Agents therapeutic use, Ultraviolet Rays adverse effects, United States, Young Adult, COVID-19, Sunburn drug therapy, Sunburn epidemiology, Sunburn prevention & control
- Abstract
Background: Melanoma is attributable to predisposing phenotypical factors, such as skin that easily sunburns and unprotected exposure to carcinogenic UV radiation. Reducing the proportion of young adults who get sunburned may reduce the incidence of melanoma, a deadly form of skin cancer. Advances in technology have enabled the delivery of real-time UV light exposure and content-relevant health interventions., Objective: This study aims to examine the feasibility of young adults performing the following tasks daily: wearing a UV dosimeter, receiving text messages and real-time UV-B doses on their smartphone, and responding to daily web-based surveys about sunburn and sun protection., Methods: Young adults aged 18-39 years (n=42) were recruited in the United States in June 2020 via social media. Participants received the UV Guard sun protection system, which consisted of a UV dosimeter and a smartphone app. During 3 consecutive periods, intervention intensity increased as follows: real-time UV-B dose; UV-B dose and daily behavioral facilitation text messages; and UV-B dose, goal setting, and daily text messages to support self-efficacy and self-regulation. Data were self-reported through daily web-based surveys for 28 days, and UV-B doses were transmitted to cloud-based storage., Results: Patients' median age was 22 years (IQR 20, 29), and all patients had sun-sensitive skin. Sunburns were experienced during the study by fewer subjects (n=18) than those in the preceding 28 days (n=30). In July and August, the face was the most commonly sunburned area among 13 body locations; 52% (22/42) of sunburns occurred before the study and 45% (19/42) occurred during the study. The mean daily UV-B dose decreased during the 3 periods; however, this was not statistically significant. Young adults were most often exercising outdoors from 2 to 6 PM, walking from 10 AM to 6 PM, and relaxing from noon to 2 PM. Sunburn was most often experienced during exercise (odds ratio [OR] 5.65, 95% CI 1.60-6.10) and relaxation (OR 3.69, 95% CI 1.03-4.67) relative to those that did not exercise or relax in each category. The self-reported exit survey indicated that participants felt that they spent less time outdoors this summer compared to the last summer because of the COVID-19 pandemic and work. In addition, 38% (16/42) of the participants changed their use of sun protection based on their app-reported UV exposure, and 48% (20/42) shifted the time they went outside to periods with less-intense UV exposure. A total of 79% (33/42) of the participants were willing to continue using the UV Guard system outside of a research setting., Conclusions: In this proof-of-concept research, young adults demonstrated that they used the UV Guard system; however, optimization was needed. Although some sun protection behaviors changed, sunburn was not prevented in all participants, especially during outdoor exercise., Trial Registration: ClinicalTrials.gov NCT03344796; http://clinicaltrials.gov/ct2/show/NCT03344796., (©June K Robinson, Shiv Patel, Seung Yun Heo, Elizabeth Gray, Jaeman Lim, Kyeongha Kwon, Zach Christiansen, Jeffrey Model, Jacob Trueb, Anthony Banks, Mary Kwasny, John A Rogers. Originally published in JMIR mHealth and uHealth (https://mhealth.jmir.org), 06.05.2021.)
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- 2021
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13. Beating the reaction limits of biosensor sensitivity with dynamic tracking of single binding events.
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Sevenler D, Trueb J, and Ünlü MS
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- Interferometry, Biosensing Techniques, DNA analysis, Gold chemistry, Metal Nanoparticles chemistry, Nanotubes chemistry
- Abstract
The clinical need for ultrasensitive molecular analysis has motivated the development of several endpoint-assay technologies capable of single-molecule readout. These endpoint assays are now primarily limited by the affinity and specificity of the molecular-recognition agents for the analyte of interest. In contrast, a kinetic assay with single-molecule readout could distinguish between low-abundance, high-affinity (specific analyte) and high-abundance, low-affinity (nonspecific background) binding by measuring the duration of individual binding events at equilibrium. Here, we describe such a kinetic assay, in which individual binding events are detected and monitored during sample incubation. This method uses plasmonic gold nanorods and interferometric reflectance imaging to detect thousands of individual binding events across a multiplex solid-phase sensor with a large area approaching that of leading bead-based endpoint-assay technologies. A dynamic tracking procedure is used to measure the duration of each event. From this, the total rates of binding and debinding as well as the distribution of binding-event durations are determined. We observe a limit of detection of 19 fM for a proof-of-concept synthetic DNA analyte in a 12-plex assay format., Competing Interests: The authors declare no conflict of interest.
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- 2019
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14. Robust Visualization and Discrimination of Nanoparticles by Interferometric Imaging.
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Trueb J, Avci O, Sevenler D, Connor JH, and Ünlü MS
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Single-molecule and single-nanoparticle biosensors are a growing frontier in diagnostics. Digital biosensors are those which enumerate all specifically immobilized biomolecules or biological nanoparticles, and thereby achieve limits of detection usually beyond the reach of ensemble measurements. Here we review modern optical techniques for single nanoparticle detection and describe the single-particle interferometric reflectance imaging sensor (SP-IRIS). We present challenges associated with reliably detecting faint nanoparticles with SP-IRIS, and describe image acquisition processes and software modifications to address them. Specifically, we describe a image acquisition processing method for the discrimination and accurate counting of nanoparticles that greatly reduces both the number of false positives and false negatives. These engineering improvements are critical steps in the translation of SP-IRIS towards applications in medical diagnostics.
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- 2017
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15. Real-Time Capture and Visualization of Individual Viruses in Complex Media.
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Scherr SM, Daaboul GG, Trueb J, Sevenler D, Fawcett H, Goldberg B, Connor JH, and Ünlü MS
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- Antibodies, Immobilized immunology, Biosensing Techniques instrumentation, Ebolavirus genetics, Immunoassay methods, Microfluidics instrumentation, Nanotechnology methods, Recombinant Proteins immunology, Serum chemistry, Vesiculovirus genetics, Vesiculovirus immunology, Vesiculovirus ultrastructure, Biosensing Techniques methods, Microfluidics methods, Vesiculovirus isolation & purification
- Abstract
Label-free imaging of individual viruses and nanoparticles directly in complex solutions is important for virology research and biosensing applications. A successful visualization technique should be rapid, sensitive, and inexpensive, while needing minimal sample preparation or user expertise. Current approaches typically require fluorescent labeling or the use of an electron microscope, which are expensive and time-consuming to use. We have developed an imaging technique for real-time, sensitive, and label-free visualization of viruses and nanoparticles directly in complex solutions such as serum. By combining the advantages of a single-particle reflectance imaging sensor, with microfluidics, we perform real-time digital detection of individual 100 nm vesicular stomatitis viruses as they bind to an antibody microarray. Using this approach, we have shown capture and visualization of a recombinant vesicular stomatitis virus Ebola model (rVSV-ZEBOV) at 100 PFU/mL in undiluted fetal bovine serum in less than 30 min.
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- 2016
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16. A Portable, Pressure Driven, Room Temperature Nucleic Acid Extraction and Storage System for Point of Care Molecular Diagnostics.
- Author
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Byrnes S, Fan A, Trueb J, Jareczek F, Mazzochette M, Sharon A, Sauer-Budge AF, and Klapperich CM
- Abstract
Many new and exciting portable HIV viral load testing technologies are emerging for use in global medicine. While the potential to provide fast, isothermal, and quantitative molecular diagnostic information to clinicians in the field will soon be a reality, many of these technologies lack a robust front end for sample clean up and nucleic acid preparation. Such a technology would enable many different downstream molecular assays. Here, we present a portable system for centrifuge-free room temperature nucleic acid extraction from small volumes of whole blood (70 µL), using only thermally stable reagents compatible with storage and transport in low resource settings. Quantitative reverse transcriptase polymerase chain reaction (qRT-PCR) analysis of simulated samples demonstrate a lower limit of detection of 1000 copies/ml, with the ability to detect differences in viral load across four orders of magnitude. The system can also be used to store extracted RNA on detachable cartridges for up to one week at ambient temperature, and can be operated using only hand generated air pressure.
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- 2013
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17. Complete primary structure of chicken collagen XIV.
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Wälchli C, Trueb J, Kessler B, Winterhalter KH, and Trueb B
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- Amino Acid Sequence, Animals, Base Sequence, Chickens, Collagen genetics, DNA chemistry, DNA isolation & purification, Glycoproteins genetics, Molecular Sequence Data, Collagen chemistry, Glycoproteins chemistry
- Abstract
We have isolated and characterized several overlapping cDNA clones for chicken collagen XIV which span a total of 6.5 kpb. These clones contain an open reading frame of 5571 bp encoding the entire collagen XIV polypeptide. The predicted polypeptide has an estimated molecular mass of 205 kDa in its glycosylated form. It is composed of 1857 amino acids which are arranged in 16 individual subdomains, including a signal peptide of 28 residues. The large amino-terminal globular domain of collagen XIV (NC3) comprises 11 of these 16 subdomains. Two of them are related to the A modules of von Willebrand factor, eight show some relationship to the type III-repeats of fibronectin and one is similar to the NC4 domain of collagen IX. The carboxy-terminal triple-helical domain is composed of two collagenous segments (COL1 and COL2), which make up less than 14% of the entire molecular mass, and of two short non-collagenous domains (NC1 and NC2). A detailed analysis of our cDNA clones indicates that collagen XIV exists in two alternatively spliced forms which differ by 31 amino acids in their NC1 domain. The variant form of the polypeptide contains 1888 amino acids with a total molecular mass of 208 kDa. Our results demonstrate that collagen XIV displays a complex multidomain structure resembling that proposed for collagen XII.
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- 1993
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18. The two splice variants of collagen XII share a common 5' end.
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Trueb J and Trueb B
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Chickens, DNA, Molecular Sequence Data, Protein Sorting Signals genetics, Collagen genetics, RNA Splicing
- Abstract
The short splice variant of collagen XII is composed of 1960 amino acid residues. This polypeptide contains the same signal peptide and the same carboxy-terminus as the long splice variant, but lacks an internal fragment of 1164 amino acid residues. Thus, the two variants of collagen XII are not created by the use of two different transcription initiation sites as generally assumed, but result from the inclusion or skipping of several exons located within the collagen XII gene.
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- 1992
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19. Molecular cloning of a novel ras-like protein from chicken.
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Trueb J and Trueb B
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- Amino Acid Sequence, Animals, Base Sequence, Blotting, Northern, Chickens, Cloning, Molecular, DNA, Fungal Proteins genetics, Humans, Molecular Sequence Data, Multigene Family, Proto-Oncogene Proteins p21(ras) genetics, Sequence Alignment, GTP-Binding Proteins genetics, Monomeric GTP-Binding Proteins, Proto-Oncogene Proteins, ras Proteins
- Abstract
We have isolated a cDNA clone from a chicken DNA expression library which codes for a ras-like polypeptide of 216 amino acid residues. This polypeptide is closely related to the human protein TC4 and to the yeast protein Spil, two novel proteins that may be involved in the coordination of the cell cycle. In the amino-terminal region, the three polypeptides possess a P-loop motif characteristic of GTP-binding proteins. At the carboxy-terminal end, however, they lack the typical CAAX-box which is usually responsible for membrane anchorage of ras-like proteins. It is therefore likely that the three polypeptides define a new subclass of GTP-binding proteins within the ras-like superfamily.
- Published
- 1992
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20. Type XIV collagen is a variant of undulin.
- Author
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Trueb J and Trueb B
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- Amino Acid Sequence, Animals, Base Sequence, Chick Embryo, Cloning, Molecular, Collagen classification, Collagen genetics, Collagen metabolism, DNA genetics, Extracellular Matrix Proteins genetics, Extracellular Matrix Proteins metabolism, Fibronectins chemistry, Fluorescent Antibody Technique, Gene Expression, Molecular Sequence Data, Molecular Weight, RNA, Messenger genetics, Sequence Alignment, Collagen chemistry, Extracellular Matrix Proteins chemistry, Glycoproteins chemistry
- Abstract
We have isolated undulin, an extracellular matrix protein associated with the surface of collagen fibrils, from chicken embryos. The protein showed a molecular mass of about 600 kDa and is composed of three 210-kDa subunits linked by reducible as well as non-reducible bonds. In contrast to human undulin which reportedly is devoid of collagenous sequences, the chicken protein contained a short triple-helical segment that was sensitive to digestion by bacterial collagenase. Screening of an expression library with affinity-purified antibodies yielded two cDNA clones specific for chicken undulin. Analysis of the amino acid sequence deduced from the nucleotide sequence of these clones showed that the human and the chicken protein shared 71% sequence identity. At the amino-terminus both polypeptides contained several similar repeats related to the type III modules found in fibronectin. Towards the carboxyl terminus, however, the two sequences diverged substantially from each other. While the human sequence terminated in a proline-rich segment, the chicken sequence continued with a domain related to von Willebrand factor, with a domain similar to the noncollagenous domain NC4 of type IX collagen and with a typical collagenous triple helix. A short segment of this sequence was found to be identical with the published sequence of a bovine peptide derived from type XIV collagen. Our protein must therefore represent chicken type XIV collagen. One way to explain these results is the possibility that undulin exists in at least two alternatively spliced variants, one lacking the collagenous domain, as described initially for human undulin, and one containing the triple-helical domain, as found in type XIV collagen.
- Published
- 1992
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21. Structural comparison of the chicken genes for alpha 1(VI) and alpha 2(VI) collagen.
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Wälchli C, Koller E, Trueb J, and Trueb B
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Chickens, DNA genetics, Exons, Introns, Molecular Sequence Data, RNA, Messenger genetics, Restriction Mapping, Sequence Homology, Nucleic Acid, Collagen genetics, Multigene Family
- Abstract
The chicken alpha 1(VI) polypeptide is encoded by a single gene spanning 21 kbp of genomic DNA. This gene is composed of 34 exons and 33 introns. Its structure is closely related to that of the alpha 2(VI) collagen gene, suggesting that the two genes evolved by gene duplication. Both genes contain 19 exons coding for the triple-helical domain. These exons are multiples of 9 bp (27, 36, 45, 54, 63 and 90 bp) and encode an integral number of collagenous Gly-Xaa-Yaa triplets. Since there is no convincing correlation to a building block of 54 bp, it is unlikely that type VI collagen has evolved from a primordial 54-bp module as suggested for all fibrillar collagens.
- Published
- 1992
- Full Text
- View/download PDF
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