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1. SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2

2. Genomic reconstruction of the SARS-CoV-2 epidemic in England

3. Rapid Whole Genome Sequencing of Serotype K1 Hypervirulent Klebsiella pneumoniae from an Undocumented Chinese Migrant

4. An integrated national scale SARS-CoV-2 genomic surveillance network

5. Multi-Compartment Profiling of Bacterial and Host Metabolites Identifies Intestinal Dysbiosis and Its Functional Consequences in the Critically Ill Child.

6. Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community

7. Population genetic structuring of methicillin-resistant Staphylococcus aureus clone EMRSA-15 within UK reflects patient referral patterns

8. Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events

9. Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England

10. Genomic reconstruction of the SARS-CoV-2 epidemic in England

11. SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2

12. COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study

13. The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: A genomics-based retrospective cohort analysis

14. Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer

15. Spatial growth rate of emerging SARS-CoV-2 lineages in England, September 2020-December 2021

16. Dexamethasone in Vietnamese adolescents and adults with bacterial meningitis.

17. Towards integrated malaria molecular surveillance in Africa.

18. Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae .

19. Exploiting human immune repertoire transgenic mice for protective monoclonal antibodies against antimicrobial resistant Acinetobacter baumannii.

20. Patterns of within-host genetic diversity in SARS-CoV-2.

21. Genomic epidemiology of COVID-19 in care homes in the east of England.

22. How achievable are COVID-19 clinical trial recruitment targets? A UK observational cohort study and trials registry analysis.

23. Screening of healthcare workers for SARS-CoV-2 highlights the role of asymptomatic carriage in COVID-19 transmission.

24. Taking the right measures to control COVID-19.

25. Dynamic Prediction of Death in Patients With Tuberculous Meningitis Using Time-updated Glasgow Coma Scale and Plasma Sodium Measurements.

26. Multi-Compartment Profiling of Bacterial and Host Metabolites Identifies Intestinal Dysbiosis and Its Functional Consequences in the Critically Ill Child.

27. Prognostic Models for 9-Month Mortality in Tuberculous Meningitis.

28. HIV-associated tuberculosis 2012.

29. Human immunodeficiency virus-associated tuberculosis.

30. First report of Salmonella enterica serotype paratyphi A azithromycin resistance leading to treatment failure.

31. Immune reconstitution disease of the central nervous system.

32. Clinical and microbiological features of HIV-associated tuberculous meningitis in Vietnamese adults.

33. Dexamethasone in Vietnamese adolescents and adults with bacterial meningitis.

34. PCR-restriction fragment length polymorphism for rapid, low-cost identification of isoniazid-resistant Mycobacterium tuberculosis.

36. Association of hepatitis B surface antigen carriage with severe malaria in Gambian children.

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