88 results on '"Tong YG"'
Search Results
2. Identification of a novel astrovirus from intestinal tissue of a donkey foal with severe diarrhea in China.
- Author
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Tian FJ, Li J, Tu QH, Xu S, Liu WL, Li Y, Bai Y, Yu J, Liu WH, Xiao YQ, Ren HY, and Tong YG
- Subjects
- Horses, Animals, Intestines, China, Equidae, Diarrhea veterinary
- Published
- 2023
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3. A SARS-CoV-2-Related Virus from Malayan Pangolin Causes Lung Infection without Severe Disease in Human ACE2-Transgenic Mice.
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Liu MQ, Lin HF, Li J, Chen Y, Luo Y, Zhang W, Hu B, Tian FJ, Hu YJ, Liu YJ, Jiang RD, Gong QC, Li A, Guo ZS, Li B, Yang XL, Tong YG, and Shi ZL
- Subjects
- Animals, Humans, Mice, Angiotensin-Converting Enzyme 2 genetics, Cell Line, China, Lung pathology, Lung virology, Mice, Transgenic, SARS-CoV-2 classification, SARS-CoV-2 genetics, SARS-CoV-2 pathogenicity, Swine, Chiroptera, COVID-19 transmission, COVID-19 virology, Host Specificity, Pangolins virology
- Abstract
Coronavirus disease 2019 (COVID-19), which is caused by the novel coronavirus severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is the most severe emerging infectious disease in the current century. The discovery of SARS-CoV-2-related coronaviruses (SARSr-CoV-2) in bats and pangolins in South Asian countries indicates that SARS-CoV-2 likely originated from wildlife. To date, two SARSr-CoV-2 strains have been isolated from pangolins seized in Guangxi and Guangdong by the customs agency of China, respectively. However, it remains unclear whether these viruses cause disease in animal models and whether they pose a transmission risk to humans. In this study, we investigated the biological features of a SARSr-CoV-2 strain isolated from a smuggled Malayan pangolin (Manis javanica) captured by the Guangxi customs agency, termed MpCoV-GX, in terms of receptor usage, cell tropism, and pathogenicity in wild-type BALB/c mice, human angiotensin-converting enzyme 2 (ACE2)-transgenic mice, and human ACE2 knock-in mice. We found that MpCoV-GX can utilize ACE2 from humans, pangolins, civets, bats, pigs, and mice for cell entry and infect cell lines derived from humans, monkeys, bats, minks, and pigs. The virus could infect three mouse models but showed limited pathogenicity, with mild peribronchial and perivascular inflammatory cell infiltration observed in lungs. Our results suggest that this SARSr-CoV-2 virus from pangolins has the potential for interspecies infection, but its pathogenicity is mild in mice. Future surveillance among these wildlife hosts of SARSr-CoV-2 is needed to monitor variants that may have higher pathogenicity and higher spillover risk. IMPORTANCE SARS-CoV-2, which likely spilled over from wildlife, is the third highly pathogenic human coronavirus. Being highly transmissible, it is perpetuating a pandemic and continuously posing a severe threat to global public health. Several SARS-CoV-2-related coronaviruses (SARSr-CoV-2) in bats and pangolins have been identified since the SARS-CoV-2 outbreak. It is therefore important to assess their potential of crossing species barriers for better understanding of their risk of future emergence. In this work, we investigated the biological features and pathogenicity of a SARSr-CoV-2 strain isolated from a smuggled Malayan pangolin, named MpCoV-GX. We found that MpCoV-GX can utilize ACE2 from 7 species for cell entry and infect cell lines derived from a variety of mammalian species. MpCoV-GX can infect mice expressing human ACE2 without causing severe disease. These findings suggest the potential of cross-species transmission of MpCoV-GX, and highlight the need of further surveillance of SARSr-CoV-2 in pangolins and other potential animal hosts.
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- 2023
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4. Virome in healthy pangolins reveals compatibility with multiple potentially zoonotic viruses.
- Author
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Tian FJ, Li J, Liu WL, Liu YJ, Hu YJ, Tu QH, Li Y, Bai Y, Shi M, Que TC, Hu YL, and Tong YG
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- Humans, Animals, Virome, Animals, Domestic, Phylogeny, Pangolins, Viruses
- Abstract
Previous studies have identified multiple viruses in dead or severely diseased pangolins, but descriptions of the virome in healthy pangolins are lacking. This poses a greater risk of cross-species transmission due to poor preventive awareness and frequent interactions with breeders. In this study, we investigated the viral composition of 34 pangolins with no signs of disease at the time of sampling and characterized a large number of arthropod-associated viruses belonging to 11 families and vertebrate viruses belonging to eight families, including those with pathogenic potential in humans and animals. Several important vertebrate viruses were identified in the pangolins, including parvovirus, pestivirus, and picobirnavirus. The picobirnavirus was clustered with human and grey teal picobirnaviruses. Viruses with cross-species transmission ability were also identified, including circovirus, rotavirus, and astrovirus. Our study revealed that pangolins are frequently exposed to arthropod-associated viruses in the wild and can carry many vertebrate viruses under natural conditions. This study provides important insights into the virome of pangolins, underscoring the importance of monitoring potential pathogens in healthy pangolins to prevent outbreaks of infectious diseases in domesticated animals and humans.
- Published
- 2022
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5. Syntheses of xanthone derivatives and their bioactivity investigation.
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Zhou BD, Weng ZM, Tong YG, Ma ZT, Wei RR, Li JL, Yu ZH, Xu GF, Fang YY, and Ruan ZP
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- Antifungal Agents pharmacology, Antioxidants pharmacology, Molecular Structure, Monophenol Monooxygenase, Structure-Activity Relationship, Xanthones pharmacology
- Abstract
Sixteen substituted 1-hydroxy-3-methylxanthones were synthesized in one step. The yields ranged from 33 to 76%. Then, the antitumor, antioxidant, anti-tyrosinase, anti-pancreatic lipase, and antifungal activities of compounds 1 - 16 were evaluated. Compounds 10 - 12 and 14 inhibited tyrosinase and pancreatic lipase activity to a certain extent, respectively. Compound 16 exhibited obvious cytotoxicity against fifteen cancer cells, moderate antioxidant activity, and moderate inhibitory activity against Candida albicans . In particular, compound 16 exhibited strong inhibitory activity against A-549 and A549/Taxol cells. These results demonstrated that compounds 10 - 12 , 14 , and 16 are promising leads for further structural modification.[Formula: see text].
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- 2021
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6. Involvement of dopamine receptor in the actions of non-psychoactive phytocannabinoids.
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Shrader SH, Tong YG, Duff MB, Freedman JH, and Song ZH
- Subjects
- Animals, Caenorhabditis elegans metabolism, Caenorhabditis elegans Proteins genetics, Dopamine metabolism, Dopamine pharmacology, Mixed Function Oxygenases genetics, Mixed Function Oxygenases metabolism, Mutation, Paralysis chemically induced, Psychotropic Drugs pharmacology, Receptors, Dopamine D2 genetics, Caenorhabditis elegans drug effects, Caenorhabditis elegans Proteins metabolism, Cannabidiol pharmacology, Cannabinoids pharmacology, Receptors, Dopamine D2 metabolism
- Abstract
Nematode Caenorhabditis elegans (C. elegans) exhibited a vigorous swimming behavior in liquid medium. Addition of dopamine inhibited the swimming behavior, causing paralysis in 65% of wild-type nematodes. Interestingly, phytocannabinoids cannabidiol (CBD) or cannabidivarin (CBDV), caused paralysis in 40% of the animals. Knockout of DOP-3, the dopamine D2-like receptor critical for locomotor behavior, eliminated the paralysis induced by dopamine, CBD, and CBDV. In contrast, both CBD and CBDV caused paralysis in animals lacking CAT-2, an enzyme necessary for dopamine synthesis. Co-administration of dopamine with either CBD or CBDV caused paralysis similar to that of either phytocannabinoid treatment alone. These data support the notion that CBD and CBDV act as functional partial agonists on dopamine D2-like receptors in vivo. The discovery that dopamine receptor is involved in the actions of phytocannabinoids moves a significant step toward our understanding of the mechanisms for medical uses of cannabis in the treatment of neurological and psychiatric disorders., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2020
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7. Mining of epitopes on spike protein of SARS-CoV-2 from COVID-19 patients.
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Zhang BZ, Hu YF, Chen LL, Yau T, Tong YG, Hu JC, Cai JP, Chan KH, Dou Y, Deng J, Wang XL, Hung IF, To KK, Yuen KY, and Huang JD
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- Adult, Aged, Aged, 80 and over, Animals, Antibodies, Neutralizing blood, Antibodies, Viral blood, COVID-19, Coronavirus Infections blood, Coronavirus Infections prevention & control, Coronavirus Infections virology, Coronavirus Nucleocapsid Proteins, Female, Humans, Male, Mice, Mice, Inbred BALB C, Middle Aged, Nucleocapsid Proteins immunology, Pandemics prevention & control, Phosphoproteins, Pneumonia, Viral blood, Pneumonia, Viral prevention & control, Pneumonia, Viral virology, SARS-CoV-2, Viral Vaccines immunology, Betacoronavirus chemistry, Coronavirus Infections immunology, Epitopes, T-Lymphocyte immunology, Pneumonia, Viral immunology, Spike Glycoprotein, Coronavirus immunology
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- 2020
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8. Identifying SARS-CoV-2-related coronaviruses in Malayan pangolins.
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Lam TT, Jia N, Zhang YW, Shum MH, Jiang JF, Zhu HC, Tong YG, Shi YX, Ni XB, Liao YS, Li WJ, Jiang BG, Wei W, Yuan TT, Zheng K, Cui XM, Li J, Pei GQ, Qiang X, Cheung WY, Li LF, Sun FF, Qin S, Huang JC, Leung GM, Holmes EC, Hu YL, Guan Y, and Cao WC
- Subjects
- Amino Acid Sequence, Animals, Betacoronavirus chemistry, Betacoronavirus classification, COVID-19, China epidemiology, Chiroptera virology, Coronavirus Infections epidemiology, Coronavirus Infections transmission, Coronavirus Infections virology, Disease Reservoirs virology, Genomics, Humans, Malaysia, Pandemics, Phylogeny, Pneumonia, Viral epidemiology, Pneumonia, Viral transmission, Pneumonia, Viral virology, Recombination, Genetic, SARS-CoV-2, Sequence Alignment, Spike Glycoprotein, Coronavirus chemistry, Spike Glycoprotein, Coronavirus genetics, Zoonoses virology, Betacoronavirus genetics, Betacoronavirus isolation & purification, Eutheria virology, Evolution, Molecular, Genome, Viral genetics, Sequence Homology, Nucleic Acid
- Abstract
The ongoing outbreak of viral pneumonia in China and across the world is associated with a new coronavirus, SARS-CoV-2
1 . This outbreak has been tentatively associated with a seafood market in Wuhan, China, where the sale of wild animals may be the source of zoonotic infection2 . Although bats are probable reservoir hosts for SARS-CoV-2, the identity of any intermediate host that may have facilitated transfer to humans is unknown. Here we report the identification of SARS-CoV-2-related coronaviruses in Malayan pangolins (Manis javanica) seized in anti-smuggling operations in southern China. Metagenomic sequencing identified pangolin-associated coronaviruses that belong to two sub-lineages of SARS-CoV-2-related coronaviruses, including one that exhibits strong similarity in the receptor-binding domain to SARS-CoV-2. The discovery of multiple lineages of pangolin coronavirus and their similarity to SARS-CoV-2 suggests that pangolins should be considered as possible hosts in the emergence of new coronaviruses and should be removed from wet markets to prevent zoonotic transmission.- Published
- 2020
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9. Repurposing of clinically approved drugs for treatment of coronavirus disease 2019 in a 2019-novel coronavirus-related coronavirus model.
- Author
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Fan HH, Wang LQ, Liu WL, An XP, Liu ZD, He XQ, Song LH, and Tong YG
- Subjects
- Betacoronavirus genetics, COVID-19, COVID-19 Testing, Cell Line, Clinical Laboratory Techniques, Coronavirus Infections diagnosis, Drug Approval, Humans, Pandemics, Pneumonia, Viral diagnosis, RNA, Small Interfering genetics, Real-Time Polymerase Chain Reaction, SARS-CoV-2, Viral Load, COVID-19 Drug Treatment, Betacoronavirus drug effects, Coronavirus Infections drug therapy, Pneumonia, Viral drug therapy
- Abstract
Background: Medicines for the treatment of 2019-novel coronavirus (2019-nCoV) infections are urgently needed. However, drug screening using live 2019-nCoV requires high-level biosafety facilities, which imposes an obstacle for those institutions without such facilities or 2019-nCoV. This study aims to repurpose the clinically approved drugs for the treatment of coronavirus disease 2019 (COVID-19) in a 2019-nCoV-related coronavirus model., Methods: A 2019-nCoV-related pangolin coronavirus GX_P2V/pangolin/2017/Guangxi was described. Whether GX_P2V uses angiotensin-converting enzyme 2 (ACE2) as the cell receptor was investigated by using small interfering RNA (siRNA)-mediated silencing of ACE2. The pangolin coronavirus model was used to identify drug candidates for treating 2019-nCoV infection. Two libraries of 2406 clinically approved drugs were screened for their ability to inhibit cytopathic effects on Vero E6 cells by GX_P2V infection. The anti-viral activities and anti-viral mechanisms of potential drugs were further investigated. Viral yields of RNAs and infectious particles were quantified by quantitative real-time polymerase chain reaction (qRT-PCR) and plaque assay, respectively., Results: The spike protein of coronavirus GX_P2V shares 92.2% amino acid identity with that of 2019-nCoV isolate Wuhan-hu-1, and uses ACE2 as the receptor for infection just like 2019-nCoV. Three drugs, including cepharanthine (CEP), selamectin, and mefloquine hydrochloride, exhibited complete inhibition of cytopathic effects in cell culture at 10 μmol/L. CEP demonstrated the most potent inhibition of GX_P2V infection, with a concentration for 50% of maximal effect [EC50] of 0.98 μmol/L. The viral RNA yield in cells treated with 10 μmol/L CEP was 15,393-fold lower than in cells without CEP treatment ([6.48 ± 0.02] × 10vs. 1.00 ± 0.12, t = 150.38, P < 0.001) at 72 h post-infection (p.i.). Plaque assays found no production of live viruses in media containing 10 μmol/L CEP at 48 h p.i. Furthermore, we found CEP had potent anti-viral activities against both viral entry (0.46 ± 0.12, vs.1.00 ± 0.37, t = 2.42, P < 0.05) and viral replication ([6.18 ± 0.95] × 10vs. 1.00 ± 0.43, t = 3.98, P < 0.05)., Conclusions: Our pangolin coronavirus GX_P2V is a workable model for 2019-nCoV research. CEP, selamectin, and mefloquine hydrochloride are potential drugs for treating 2019-nCoV infection. Our results strongly suggest that CEP is a wide-spectrum inhibitor of pan-betacoronavirus, and further study of CEP for treatment of 2019-nCoV infection is warranted.
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- 2020
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10. Melatonin regulates the ovarian function and enhances follicle growth in aging laying hens via activating the mammalian target of rapamycin pathway.
- Author
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Hao EY, Chen H, Wang DH, Huang CX, Tong YG, Chen YF, Zhou RY, and Huang RL
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- Animals, Antioxidants administration & dosage, Avian Proteins metabolism, Female, Injections, Intraperitoneal veterinary, Melatonin administration & dosage, Ovarian Follicle drug effects, Ovary drug effects, Random Allocation, Antioxidants pharmacology, Chickens physiology, Melatonin pharmacology, Ovarian Follicle growth & development, Ovary physiology, Signal Transduction, TOR Serine-Threonine Kinases metabolism
- Abstract
The signal pathway of target of rapamycin (TOR) plays an important role in regulating cell growth and proliferation, follicular development, and ovulation. Melatonin (N-acetyl-5-methoxytryptamine) (MT) is involved in the regulation of many physiological functions in animals. Recent studies have shown that MT affects the number and the degree of maturation of follicles in the ovary, but there are few studies concerning its mechanism. Therefore, the aim of this study was to investigate the mechanism of TOR signal pathway in the regulation of ovarian function by MT in aging laying hens. In the present study, a total of 60 hens (70-week-old) were randomly divided into 2 groups: control group and melatonin group (M). Melatonin was administered intraperitoneally at a dose of 20 mg/kg/D for 28 D in the M group. The results showed that MT significantly increased the levels of the antioxidant enzymes superoxide dismutase and total antioxidant capacity (P < 0.01) as well as levels of immunoglobulin (IgA, IgG, and IgM) (P < 0.05) and the reproductive hormones estradiol and luteinizing hormone (P < 0.01) in the plasma and also increased the numbers of middle white follicles and small white follicles (P < 0.05) and decreased the level of reactive oxygen species in plasma (P < 0.01) in laying hens. There were higher expression levels in MT receptor A (P < 0.05), melatonin receptor B (P < 0.01), and tuberous sclerosis complex 2 (P < 0.01). Activation of TOR, 4E binding protein-l (4E-BP1), and ribosomal protein 6 kinase (P < 0.01) was found in the M. The levels of mTOR and p-mTOR protein were increased in the M (P < 0.05). The mTORC1-dependent 4E-BP1 and p-4E-BP1 were increased in the M (P < 0.05). This study indicated that MT may enhance follicle growth by increasing levels of antioxidant enzymes and reproductive hormones and by activating the mTOR and downstream components in aging laying hens., (Copyright © 2019. Published by Elsevier Inc.)
- Published
- 2020
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11. Corrigendum to "Chronic exposure to arsenic and high fat diet induces sex-dependent pathogenic effects on the kidney" [Chem. Biol. Interact. 310 (2019) 108719].
- Author
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Zhang Y, Young JL, Cai L, Tong YG, Miao L, and Freedman JH
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- 2020
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12. Chronic exposure to arsenic and high fat diet induces sex-dependent pathogenic effects on the kidney.
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Zhang Y, Young JL, Cai L, Tong YG, Miao L, and Freedman JH
- Subjects
- Animals, Arsenic toxicity, Body Weight drug effects, Inflammation etiology, Kidney injuries, Kidney Diseases chemically induced, Kidney Diseases pathology, Mice, Mice, Inbred C57BL, Oxidative Stress drug effects, Sex Factors, Arsenic adverse effects, Diet, High-Fat adverse effects, Kidney drug effects, Kidney Diseases etiology
- Abstract
Both obesity and arsenic exposure are global public health problems that are associated with increased risk of renal disease. The effect of whole-life exposure to environmentally relevant levels of arsenic within dietary high fat diet on renal pathogenesis were examined. In this study, C57BL/6 J mice were parentally exposed to 100 ppb arsenic before conception. After weaning, both male and female offspring were maintained on 100 ppb arsenic and fed either a normal (LFD) or high fat diet (HFD). At 10 and 24 weeks of age, the offspring were sacrificed and kidneys collected. Exposure to arsenic led to an increase body-weight in LFD diet-fed female but not male mice. This response was not observed in HFD-fed female mice; however male mice showed significant increases in body weight in both As- and non-treated animals. Histological analysis shows that arsenic exposure significantly increases HFD-induced glomerular area expansion, mesangial matrix accumulation and fibrosis compared to LFD control animals. HFD alone increases renal inflammation and fibrosis; reflected by increases in IL-1β, ICAM-1 and fibronectin levels. Arsenic exposure significantly increases HFD-induced inflammatory and oxidative stress responses. In general, male mice have more severe responses than female mice to HFD or arsenic treatment. These results demonstrate that arsenic exposure causes sex-dependent alterations in HFD-induced kidney damage., (Copyright © 2019. Published by Elsevier B.V.)
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- 2019
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13. Genome Analysis of Coxsackievirus A4 Isolates From Hand, Foot, and Mouth Disease Cases in Shandong, China.
- Author
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Wang M, Li J, Yao MX, Zhang YW, Hu T, Carr MJ, Duchêne S, Zhang XC, Zhang ZJ, Zhou H, Tong YG, Ding SJ, Wang XJ, and Shi WF
- Abstract
Coxsackievirus A4 (CVA4) is one of the most prevalent pathogens associated with hand, foot and mouth disease (HFMD), an acute febrile illness in children, and is also associated with acute localized exanthema, myocarditis, hepatitis and pancreatitis. Despite this, limited CVA4 genome sequences are currently available. Herein, complete genome sequences from CVA4 strains ( n = 21), isolated from patients with HFMD in Shandong province, China between 2014 and 2016, were determined and phylogenetically characterized. Phylogenetic analysis of the VP1 gene from a larger CVA4 collection ( n = 175) showed that CVA4 has evolved into four separable genotypes: A, B, C, and D; and genotype D could be further classified in to two sub-genotypes: D1 and D2. Each of the 21 newly described genomes derived from isolates that segregated with sub-genotype D2. The CVA4 genomes displayed significant intra-genotypic genetic diversity with frequent synonymous substitutions occurring at the third codon positions, particularly within the P2 region. However, VP1 was relatively stable and therefore represents a potential target for molecular diagnostics assays and also for the rational design of vaccine epitopes. The substitution rate of VP1 was estimated to be 5.12 × 10
-3 substitutions/site/year, indicative of ongoing CVA4 evolution. Mutations at amino acid residue 169 in VP1 gene may be responsible for differing virulence of CVA4 strains. Bayesian skyline plot analysis showed that the population size of CVA4 has experienced several dynamic fluctuations since 1948. In summary, we describe the phylogenetic and molecular characterization of 21 complete genomes from CVA4 isolates which greatly enriches the known genomic diversity of CVA4 and underscores the need for further surveillance of CVA4 in China.- Published
- 2019
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14. Emergence of human infection with Jingmen tick virus in China: A retrospective study.
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Jia N, Liu HB, Ni XB, Bell-Sakyi L, Zheng YC, Song JL, Li J, Jiang BG, Wang Q, Sun Y, Wei R, Yuan TT, Xia LY, Chu YL, Wei W, Li LF, Ye JL, Lv QY, Cui XM, Guan Y, Tong YG, Jiang JF, Lam TT, and Cao WC
- Subjects
- Biomarkers, China, Communicable Diseases, Emerging diagnosis, Communicable Diseases, Emerging transmission, Flavivirus Infections diagnosis, Flavivirus Infections transmission, High-Throughput Nucleotide Sequencing, Humans, Immunohistochemistry, In Situ Hybridization, Phylogeny, Public Health Surveillance, RNA, Viral, Retrospective Studies, Serologic Tests, Skin pathology, Tick Bites, Communicable Diseases, Emerging epidemiology, Communicable Diseases, Emerging virology, Flavivirus classification, Flavivirus genetics, Flavivirus Infections epidemiology, Flavivirus Infections virology
- Abstract
Background: A tick-borne segmented RNA virus called Jingmen tick virus (JMTV) was recently identified, variants of which were detected in a non-human primate host and fatal patients with Crimean-Congo haemorrhagic fever. We investigated its infectivity and pathogenicity for humans., Methods: We obtained skin-biopsy, blood and serum samples from patients with tick bites, and used high-throughput sequencing, in situ hybridisation, and serologic testing to diagnose and ascertain the cases of JMTV infection., Findings: A JMTV strain was isolated from the tick Amblyomma javanense into an embryo-derived tick cell line. We obtained sustained passage of JMTV, and revealed that it was able to accumulate in salivary glands of experimentally infected ticks. Four JMTV-infected patients were identified by high-throughput sequencing of skin biopsies and blood samples. The virus replication in skin tissue was visualised by in situ hybridisation. The four patients all had an itchy or painful eschar at the site of tick bite, with or without lymphadenopathy. Immunohistochemical examination revealed remarkable local inflammation manifested as infiltration by neutrophils. Eight patients were identified by serological testing and showed more severe clinical manifestations. Two Ixodes persulcatus ticks detached from patients were positive for JMTV. All JMTV strains identified in this study formed a well-supported sub-lineage, distinct from those previously reported in China. Interpretation The public significance of JMTV should be highly concerning due to its potential pathogenicity for humans and efficient transmission by potential ticks. FUND: China Natural Science Foundation, State Key Research Development Programme, and United Kingdom Biotechnology and Biological Sciences Research Council., (Copyright © 2019 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2019
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15. [Clinical characteristics of human adenovirus type 7 pneumonia and genetic characteristics of human adenovirus type 7].
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Li XF, Xi W, Wang YY, Wang XQ, Zhao N, Wang HJ, Wu T, Yang JC, Zhang GL, Zhang LY, Zhao JL, Yang AL, Ning YY, Liu YN, Ping J, Gao ZC, Tong YG, and Tian GZ
- Subjects
- Adenoviridae Infections virology, Adenoviruses, Human isolation & purification, Bronchoalveolar Lavage Fluid, China, Humans, Male, Phylogeny, Whole Genome Sequencing, Young Adult, Adenoviruses, Human genetics, DNA, Viral genetics, Pneumonia, Viral virology
- Abstract
Objective: To better understand the clinical features of human adenovirus type 7 (hAdV7) pneumonia and to identify whether there is a variation in the genome of the strain (CHN/BeiJing/2018) isolated during the small-scale epidemic. Method: Forty-two patients were diagnosed with hAdV7 pneumonia between October 27th, 2017 and February 28th, 2018. They were all males with an average age of (21±2) years. Demographic and clinical data were reviewed and analyzed in detail. The nucleic acid of the epidemic strain was extracted from a bronchoalveolar lavage fluid sample. Whole genome sequencing (WGS) was then performed and sequences were compared with other hAdV7 strains distributed globally. Phylogenetic tree analysis was conducted based on whole genome sequences of the epidemic strain. Results: Thirty-eight cases with hAdV7 pneumonia presented with influenza-like symptoms (90.5%) at the onset and 36 cases developed fever (85.7%), followed by cough (97.6%), expectoration (90.5%) and chest pain (28.6%). Five cases presented with tonsillitis(11.9%) and 4 had transient hemoptysis (9.5%), while 3 patients reported dyspnea (7.1%). Moist rales were only heard in 3 patients (7.1%). Notably elevated creatine kinase (CK) concentrations were observed in 8 patients (19.1%), but all returned to normal after treatment. Four cases developed hypoxemia (9.5%), but none of them progressed to respiratory failure or acute respiratory distress syndrome (ARDS). Chest CT imaging showed bilateral patchy parenchymal opacities with a random distribution with or without consolidation. Ten patients were co-infected with influenza virus (23.8%), while 32 patients developed atypical pneumonia (76.2%). Genomic analysis revealed that the strain isolated during this epidemic was 99% similar to the known hAdV7 strains (19BOVLB/Volgograd/Rus/2014 and 0901HZ/ShX/CHN/2009). Phylogenetic tree analysis suggested that the strain was closely related to the hAdV7 strain isolated in Jingmen China in 2012. Conclusions: Cases with hAdV7 pneumonia were generally mild. Symptomatic treatment was sufficient for a favorable prognosis. A good genome stability of the hAdV7 strain was observed, indicating that hAdV7 could remain stable for a long period and cause continuing sporadic cases and clusters.
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- 2019
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16. Identification of tick-borne pathogen diversity by metagenomic analysis in Haemaphysalis longicornis from Xinyang, China.
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Zhuang L, Du J, Cui XM, Li H, Tang F, Zhang PH, Hu JG, Tong YG, Feng ZC, and Liu W
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- Anaplasma isolation & purification, Animals, Babesia isolation & purification, China, Humans, Ixodidae virology, Metagenomics, Phlebovirus isolation & purification, Rickettsia isolation & purification, Tick-Borne Diseases transmission, Ixodidae microbiology, Ixodidae parasitology, Metagenome
- Abstract
Background: A wide variety of pathogens could be maintained and transmitted by Haemaphysalis longicornis. The aim of this study is to systematically examine the variety of pathogens carried by Haemaphysalis longicornis, an importnatn vector, in tick-borne diseases epidemic area, and to estimate the risk of human infection imposed by tick bites., Methods: Adult questing ticks were collected in Xinyang, central China. Genomic DNA and RNA were extracted from 144 H. longicornis ticks individually, and sequenced respectively as the templates for high-throughput sequencing. Clean reads were compared against the database of NCBI nucleotide collection and specific PCR was performed to confirm the presence of pathogen. Phylogenetic analysis was performed to explore the evolutionary status of pathogens., Results: The assignment of reads to taxa based on BLASTN results revealed the existence of several potential pathogens, including Anaplasma spp., Rickettsia spp., Babesia sp., as well as severe fever with thrombocytopenia syndrome bunyavirus (SFTSV). Comfirmantory PCR assays revealed the existence of Anaplasma bovis (13/144, 9.03%), Anaplasma centrale (2/144, 1.39%), Rickettsia heilongjiangensis (3/144, 2.08%), Rickettsia sp. LON-13 (1/144, 0.69%), Rickettsia raoultii (5/144, 3.47%), Babesia sp. (1/144, 0.69%). SFTSV accounted for the highest detected pathogen with a positive rate of 18.75% (27/144). Three of the ticks (2.08%) were co-infected with SFTSV and A. bovis., Conclusion: Our study provided a broadened list of microorganism that harbored by H. longicornis. In previously unrecognized endemic regions, prokaryotic and eukaryotic infection including Anaplasma spp., Rickettsiae spp., and Babesia spp. should be considered, along with the well-known SFTSV for patients with tick bites history. A novel Babesia species was identified in local natural foci, which needs further investigation in the future.
- Published
- 2018
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17. Synthesis and antitumor, antityrosinase, and antioxidant activities of xanthone.
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Zhou BD, Zeng LL, Tong YG, Fang JY, Ruan ZP, Zeng XY, Fang YY, Xu GF, and Hu DB
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- Antineoplastic Agents chemical synthesis, Cell Line, Tumor, Cell Survival drug effects, Humans, Molecular Structure, Antineoplastic Agents pharmacology, Antioxidants chemical synthesis, Antioxidants pharmacology, Monophenol Monooxygenase antagonists & inhibitors, Xanthones chemical synthesis, Xanthones pharmacology
- Abstract
Ten substituted 1,3-dihydroxyxanthones were synthesized in one step. The yields ranged from 40 to 76%. Compounds 8-10 were first reported. Next, the compounds' in vitro anti-proliferative activities against nine human cancer cell lines, antityrosinase, and antioxidant activities were evaluated. Compounds 1, 4, 6-7, and 9-10 exhibited enhanced cytotoxicity against certain cancer cells. Compounds 2, 8, 9, and 10 inhibited tyrosinase activity to a certain extent. In addition, compound 4 exhibited the best antioxidant activity, which was consistent with theoretical calculations. These results demonstrated that compounds 1-2, 4, and 6-10 were promising leads for further investigation.
- Published
- 2018
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18. Targeting the Hsp90-Cdc37-client protein interaction to disrupt Hsp90 chaperone machinery.
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Li T, Jiang HL, Tong YG, and Lu JJ
- Subjects
- HSP90 Heat-Shock Proteins pharmacology, Humans, Molecular Chaperones pharmacology, Cell Cycle Proteins metabolism, HSP90 Heat-Shock Proteins therapeutic use, Molecular Chaperones therapeutic use
- Abstract
Heat shock protein 90 (Hsp90) is a critical molecular chaperone protein that regulates the folding, maturation, and stability of a wide variety of proteins. In recent years, the development of Hsp90-directed inhibitors has grown rapidly, and many of these inhibitors have entered clinical trials. In parallel, the functional dissection of the Hsp90 chaperone machinery has highlighted the activity disruption of Hsp90 co-chaperone as a potential target. With the roles of Hsp90 co-chaperones being elucidated, cell division cycle 37 (Cdc37), a ubiquitous co-chaperone of Hsp90 that directs the selective client proteins into the Hsp90 chaperone cycle, shows great promise. Moreover, the Hsp90-Cdc37-client interaction contributes to the regulation of cellular response and cellular growth and is more essential to tumor tissues than normal tissues. Herein, we discuss the current understanding of the clients of Hsp90-Cdc37, the interaction of Hsp90-Cdc37-client protein, and the therapeutic possibilities of targeting Hsp90-Cdc37-client protein interaction as a strategy to inhibit Hsp90 chaperone machinery to present new insights on alternative ways of inhibiting Hsp90 chaperone machinery.
- Published
- 2018
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19. Fatal swine acute diarrhoea syndrome caused by an HKU2-related coronavirus of bat origin.
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Zhou P, Fan H, Lan T, Yang XL, Shi WF, Zhang W, Zhu Y, Zhang YW, Xie QM, Mani S, Zheng XS, Li B, Li JM, Guo H, Pei GQ, An XP, Chen JW, Zhou L, Mai KJ, Wu ZX, Li D, Anderson DE, Zhang LB, Li SY, Mi ZQ, He TT, Cong F, Guo PJ, Huang R, Luo Y, Liu XL, Chen J, Huang Y, Sun Q, Zhang XL, Wang YY, Xing SZ, Chen YS, Sun Y, Li J, Daszak P, Wang LF, Shi ZL, Tong YG, and Ma JY
- Subjects
- Alphacoronavirus classification, Alphacoronavirus genetics, Animal Diseases transmission, Animals, Biodiversity, China epidemiology, Coronavirus Infections epidemiology, Coronavirus Infections transmission, Diarrhea pathology, Diarrhea virology, Disease Reservoirs veterinary, Disease Reservoirs virology, Genome, Viral genetics, Humans, Jejunum pathology, Jejunum virology, Phylogeny, Severe Acute Respiratory Syndrome epidemiology, Severe Acute Respiratory Syndrome veterinary, Severe Acute Respiratory Syndrome virology, Spatio-Temporal Analysis, Zoonoses epidemiology, Zoonoses transmission, Zoonoses virology, Alphacoronavirus isolation & purification, Alphacoronavirus pathogenicity, Animal Diseases epidemiology, Animal Diseases virology, Chiroptera virology, Coronavirus Infections veterinary, Diarrhea veterinary, Swine virology
- Abstract
Cross-species transmission of viruses from wildlife animal reservoirs poses a marked threat to human and animal health
1 . Bats have been recognized as one of the most important reservoirs for emerging viruses and the transmission of a coronavirus that originated in bats to humans via intermediate hosts was responsible for the high-impact emerging zoonosis, severe acute respiratory syndrome (SARS)2-10 . Here we provide virological, epidemiological, evolutionary and experimental evidence that a novel HKU2-related bat coronavirus, swine acute diarrhoea syndrome coronavirus (SADS-CoV), is the aetiological agent that was responsible for a large-scale outbreak of fatal disease in pigs in China that has caused the death of 24,693 piglets across four farms. Notably, the outbreak began in Guangdong province in the vicinity of the origin of the SARS pandemic. Furthermore, we identified SADS-related CoVs with 96-98% sequence identity in 9.8% (58 out of 591) of anal swabs collected from bats in Guangdong province during 2013-2016, predominantly in horseshoe bats (Rhinolophus spp.) that are known reservoirs of SARS-related CoVs. We found that there were striking similarities between the SADS and SARS outbreaks in geographical, temporal, ecological and aetiological settings. This study highlights the importance of identifying coronavirus diversity and distribution in bats to mitigate future outbreaks that could threaten livestock, public health and economic growth.- Published
- 2018
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20. Isolation and Identification of Rickettsia raoultii in Human Cases: A Surveillance Study in 3 Medical Centers in China.
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Li H, Zhang PH, Huang Y, Du J, Cui N, Yang ZD, Tang F, Fu FX, Li XM, Cui XM, Fan YD, Xing B, Li XK, Tong YG, Cao WC, and Liu W
- Subjects
- Adult, Aged, Animals, China, Doxycycline therapeutic use, Female, Genome, Bacterial, Humans, Male, Middle Aged, Polymerase Chain Reaction, Rickettsia genetics, Rickettsia Infections drug therapy, Ticks microbiology, Virulence Factors genetics, Whole Genome Sequencing, Young Adult, Antibodies, Bacterial blood, Rickettsia isolation & purification, Rickettsia Infections epidemiology, Sentinel Surveillance
- Abstract
Background: Rickettsia raoultii is frequently detected in multiple tick species, whereas human infection remains scarcely studied., Methods: A surveillance study was performed at 3 sentinel hospitals in China, to recruit participants with suspected tick exposure. Rickettsia raoultii infection was identified through polymerase chain reaction, followed by sequencing, and confirmed serologically. Isolation by cell culture was performed and the isolates were genome sequenced., Results: Twenty-six subjects were determined to have R. raoultii infection, including 7 with asymptomatic infection, 15 with mild to moderate illness, and 4 with severe illness. Common nonspecific manifestations in the 19 patients with mild to moderate or severe illness included fever (100%), malaise (95%), myalgia (58%), lymphadenopathy (53%), and nausea (42%). Only 5% of them had rash, and 16% had eschar. Scalp eschar and neck lymphadenopathy after a tick bite syndrome was only seen in 2 patients. Of the 4 patients with severe complications, 3 developed pulmonary edema, and 1 developed clouding of consciousness and lethargy. Frequent abnormalities of laboratory testing included leukopenia, thrombocytopenia, lymphopenia, neutropenia, hypoproteinemia, and elevated levels of total bilirubin, hepatic aminotransferases, lactate dehydrogenase, and creatine kinase. All the 19 patients recovered without sequelae after receiving doxycycline treatment. Two R. raoultii strains were isolated, and a significantly less degraded genome was observed than other more virulent Rickettsia strains, indicating a low pathogenicity of the current strain., Conclusions: Human infection with R. raoultii has a wide clinical spectrum that ranged from subclinical infection to severe complications. Physicians need to be aware of the high potential and clinical complexity of R. raoultii infection, to ensure appropriate testing and treatment in endemic regions.
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- 2018
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21. [Full-length genome analysis of a coxsackievirus B5 strain isolated from Shandong Province in 2014].
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Wang M, Wei QJ, Li J, Jiang XQ, Zhang ZJ, Tong YG, Ding SJ, Wang XJ, and Shi WF
- Published
- 2018
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22. Intranasal infection and contact transmission of Zika virus in guinea pigs.
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Deng YQ, Zhang NN, Li XF, Wang YQ, Tian M, Qiu YF, Fan JW, Hao JN, Huang XY, Dong HL, Fan H, Wang YG, Zhang FC, Tong YG, Xu Z, and Qin CF
- Subjects
- Animals, Disease Models, Animal, Female, Guinea Pigs, Humans, Intestines pathology, Intestines virology, Macaca fascicularis, Male, Mice, Saliva virology, Serum virology, Spleen pathology, Spleen virology, Tears virology, Testis pathology, Testis virology, Zika Virus Infection pathology, Nose virology, Zika Virus physiology, Zika Virus Infection transmission, Zika Virus Infection virology
- Abstract
Zika virus (ZIKV) is primarily transmitted to humans through mosquito bites or sexual contact. The excretion and persistence of contagious ZIKV in various body fluids have been well documented in ZIKV patients; however, the risk of direct contact exposure remains unclear. Here, we show that guinea pigs are susceptible to ZIKV infection via subcutaneous inoculation route; infected guinea pigs exhibit seroconversion and significant viral secretion in sera, saliva, and tears. Notably, ZIKV is efficiently transmitted from infected guinea pigs to naïve co-caged animals. In particular, intranasal inoculation of ZIKV is fully capable of establishing infection in guinea pigs, and viral antigens are detected in multiple tissues including brain and parotid glands. Cynomolgus macaques also efficiently acquire ZIKV infection via intranasal and intragastric inoculation routes. These collective results from animal models highlight the risk of exposure to ZIKV contaminants and raise the possibility of close contact transmission of ZIKV in humans.
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- 2017
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23. Characterization of cis -Acting RNA Elements of Zika Virus by Using a Self-Splicing Ribozyme-Dependent Infectious Clone.
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Liu ZY, Yu JY, Huang XY, Fan H, Li XF, Deng YQ, Ji X, Cheng ML, Ye Q, Zhao H, Han JF, An XP, Jiang T, Zhang B, Tong YG, and Qin CF
- Subjects
- Animals, Cells, Cultured, Cloning, Molecular, Cricetinae, DNA, Complementary, Gene Expression Regulation, Viral, Kidney metabolism, Kidney virology, Mice, Inbred BALB C, RNA, Catalytic genetics, Reverse Genetics, Viral Load, Virus Replication, RNA Splicing, RNA, Catalytic metabolism, Regulatory Sequences, Ribonucleic Acid genetics, Zika Virus genetics, Zika Virus Infection virology
- Abstract
Zika virus (ZIKV) has caused significant outbreaks and epidemics in the Americas recently, raising global concern due to its ability to cause microcephaly and other neurological complications. A stable and efficient infectious clone of ZIKV is urgently needed. However, the instability and toxicity of flavivirus cDNA clones in Escherichia coli hosts has hindered the development of ZIKV infectious clones. Here, using a novel self-splicing ribozyme-based strategy, we generated a stable infectious cDNA clone of a contemporary ZIKV strain imported from Venezuela to China in 2016. The constructed clone contained a modified version of the group II self-splicing intron P.li.LSUI2 near the junction between the E and NS1 genes, which were removed from the RNA transcripts by an easy-to-establish in vitro splicing reaction. Transfection of the spliced RNAs into BHK-21 cells led to the production of infectious progeny virus that resembled the parental virus. Finally, potential cis -acting RNA elements in ZIKV genomic RNA were identified based on this novel reverse genetics system, and the critical role of 5'-SLA promoter and 5'-3' cyclization sequences were characterized by a combination of different assays. Our results provide another stable and reliable reverse genetics system for ZIKV that will help study ZIKV infection and pathogenesis, and the novel self-splicing intron-based strategy could be further expanded for the construction of infectious clones from other emerging and reemerging flaviviruses. IMPORTANCE The ongoing Zika virus (ZIKV) outbreaks have drawn global concern due to the unexpected causal link to fetus microcephaly and other severe neurological complications. The infectious cDNA clones of ZIKV are critical for the research community to study the virus, understand the disease, and inform vaccine design and antiviral screening. A panel of existing technologies have been utilized to develop ZIKV infectious clones. Here, we successfully generated a stable infectious clone of a 2016 ZIKV strain using a novel self-splicing ribozyme-based technology that abolished the potential toxicity of ZIKV cDNA clones to the E. coli host. Moreover, two crucial cis -acting replication elements (5'-SLA and 5'-CS) of ZIKV were first identified using this novel reverse genetics system. This novel self-splicing ribozyme-based reverse genetics platform will be widely utilized in future ZIKV studies and provide insight for the development of infectious clones of other emerging viruses., (Copyright © 2017 American Society for Microbiology.)
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- 2017
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24. [The research and application of pretreatment method for matrix-assisted laser desorption ionization-time of flight mass spectrometry identification of filamentous fungi].
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Huang YF, Chang Z, Bai J, Zhu M, Zhang MX, Wang M, Zhang G, Li XY, Tong YG, Wang JL, and Lu XX
- Subjects
- Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Fungi
- Abstract
Objective: To establish and evaluate the feasibility of a pretreatment method for matrix-assisted laser desorption ionization-time of flight mass spectrometry identification of filamentous fungi developed by the laboratory. Methods: Three hundred and eighty strains of filamentous fungi from January 2014 to December 2016 were recovered and cultured on sabouraud dextrose agar (SDA) plate at 28 ℃ to mature state. Meanwhile, the fungi were cultured in liquid sabouraud medium with a vertical rotation method recommended by Bruker and a horizontal vibration method developed by the laboratory until adequate amount of colonies were observed. For the strains cultured with the three methods, protein was extracted with modified magnetic bead-based extraction method for mass spectrum identification. Results: For 380 fungi strains, it took 3-10 d to culture with SDA culture method, and the ratio of identification of the species and genus was 47% and 81%, respectively; it took 5-7 d to culture with vertical rotation method, and the ratio of identification of the species and genus was 76% and 94%, respectively; it took 1-2 d to culture with horizontal vibration method, and the ratio of identification of the species and genus was 96% and 99%, respectively. For the comparison between horizontal vibration method and SDA culture method comparison, the difference was statistically significant (χ(2)=39.026, P <0.01); for the comparison between horizontal vibration method and vertical rotation method recommended by Bruker, the difference was statistically significant(χ(2)=11.310, P <0.01). Conclusion: The horizontal vibration method and modified magnetic bead-based extraction method developed by the laboratory is superior to the method recommended by Bruker and SDA culture method in terms of the identification capacity for filamentous fungi, which can be applied in clinic.
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- 2017
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25. Features of Ebola Virus Disease at the Late Outbreak Stage in Sierra Leone: Clinical, Virological, Immunological, and Evolutionary Analyses.
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Jiang T, Jiang JF, Deng YQ, Jiang BG, Fan H, Han JF, Hu Y, Zhuang DM, Kargbo D, An XP, Mi ZQ, Zhao GY, Xin WW, Tan YF, He J, Gao RB, Wang H, Chen C, Wang F, Li CX, Zhao JJ, Cui YJ, Bei ZC, Zhang K, Shang XY, Zhang WH, Pei GQ, Wang YF, Wang W, Shu P, Liu WL, Cheng S, Zhu SY, Kanu A, Kargbo B, Gao B, Tong YG, Fang TY, and Cao WC
- Subjects
- Antibodies, Viral blood, Cytokines blood, Disease Outbreaks, Genome, Viral, Humans, Sierra Leone epidemiology, Survivors, Ebolavirus genetics, Hemorrhagic Fever, Ebola epidemiology, Hemorrhagic Fever, Ebola immunology, Viral Load
- Abstract
We performed Ebola virus disease diagnosis and viral load estimation for Ebola cases in Sierra Leone during the late stage of the 2014-2015 outbreak (January-March 2015) and analyzed antibody and cytokine levels and the viral genome sequences. Ebola virus disease was confirmed in 86 of 1001 (9.7%) patients, with an overall case fatality rate of 46.8%. Fatal cases exhibited significantly higher levels of viral loads, cytokines, and chemokines at late stages of infection versus early stage compared with survivors. The viruses converged in a new clade within sublineage 3.2.4, which had a significantly lower case fatality rate., (© The Author 2017. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: journals.permissions@oup.com.)
- Published
- 2017
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26. Evolution of the functionally conserved DCC gene in birds.
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Patthey C, Tong YG, Tait CM, and Wilson SI
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- Animals, Genetic Loci, Genomic Instability, Birds, Evolution, Molecular, Genes, DCC
- Abstract
Understanding the loss of conserved genes is critical for determining how phenotypic diversity is generated. Here we focus on the evolution of DCC, a gene that encodes a highly conserved neural guidance receptor. Disruption of DCC in animal models and humans results in major neurodevelopmental defects including commissural axon defects. Here we examine DCC evolution in birds, which is of particular interest as a major model system in neurodevelopmental research. We found the DCC containing locus was disrupted several times during evolution, resulting in both gene losses and faster evolution rate of salvaged genes. These data suggest that DCC had been lost independently twice during bird evolution, including in chicken and zebra finch, whereas it was preserved in many other closely related bird species, including ducks. Strikingly, we observed that commissural axon trajectory appeared similar regardless of whether DCC could be detected or not. We conclude that the DCC locus is susceptible to genomic instability leading to independent disruptions in different branches of birds and a significant influence on evolution rate. Overall, the phenomenon of loss or molecular evolution of a highly conserved gene without apparent phenotype change is of conceptual importance for understanding molecular evolution of key biological processes.
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- 2017
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27. Characterization of Highly Pathogenic Avian Influenza H5N1 Viruses Isolated from Domestic Poultry in China.
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Lai CC, Wang KY, Chen R, Zhang AJ, Gu HJ, Yin YB, Wang DD, Liu LL, Xing L, Tong YG, Ma ZJ, Yang PH, and Wang XL
- Subjects
- Animals, China, Influenza A Virus, H5N1 Subtype genetics, Influenza A Virus, H5N1 Subtype pathogenicity, Mice, Inbred BALB C, Phylogeny, Poultry, Influenza A Virus, H5N1 Subtype isolation & purification, Influenza in Birds virology
- Abstract
The highly pathogenic avian influenza (HPAI) H5N1 virus has caused several outbreaks in domestic poultry. Despite great efforts to control the spread of this virus, it continues to evolve and poses a substantial threat to public health because of a high mortality rate. In this study, we sequenced whole genomes of eight H5N1 avian influenza viruses isolated from domestic poultry in eastern China and compared them with those of typical influenza virus strains. Phylogenetic analyses showed that all eight genomes belonged to clade 2.3.2.1 and clade 7.2, the two main circulating clades in China. Viruses that clustered in clade 2.3.2.1 shared a high degree of homology with H5N1 isolates located in eastern Asian. Isolates that clustered in clade 7.2 were found to circulate throughout China, with an east-to-west density gradient. Pathogenicity studies in mice showed that these isolates replicate in the lungs, and clade 2.3.2.1 viruses exhibit a notably higher degree of virulence compared to clade 7.2 viruses. Our results contribute to the elucidation of the biological characterization and pathogenicity of HPAI H5N1 viruses., (Copyright © 2017 The Editorial Board of Biomedical and Environmental Sciences. Published by China CDC. All rights reserved.)
- Published
- 2017
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28. crAssphage is not associated with diarrhoea and has high genetic diversity.
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Liang YY, Zhang W, Tong YG, and Chen SP
- Abstract
crAssphage is a newly discovered gut bacteriophage. However, its pathogenicity and molecular epidemiology in humans are as yet unclear. In this study, we investigated the association between crAssphage and diarrhoea, as well as the molecular epidemiology of crAssphage in Chinese patients from our hospital. Our results indicated that there were no significant differences in the crAssphage-positive ratio and viral loads in faecal supernatants between adults with diarrhoea and healthy adults. Of infants and children with diarrhoea, 2·8% were found to be crAssphage-positive, including two infants aged <1 month. Markedly, of all confirmed crAssphage-positive strains, 100% had the ORF00039 deletion and 77·8% had low identity of ORF00018 compared to crAssphage (GenBank accession no. NC_024711, designated genotype 1). Thus, crAssphage was not associated with diarrhoea and most strains of crAssphage in Chinese patients (designated genotype 2) were characterized by the ORF00039 deletion and low identity of ORF00018.
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- 2016
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29. The Sclerophyllous Eucalyptus camaldulensis and Herbaceous Nicotiana tabacum Have Different Mechanisms to Maintain High Rates of Photosynthesis.
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Huang W, Tong YG, Yu GY, and Yang WX
- Abstract
It is believed that high levels of mesophyll conductance ( g
m ) largely contribute to the high rates of photosynthesis in herbaceous C3 plants. However, some sclerophyllous C3 plants that display low levels of gm have high rates of photosynthesis, and the underlying mechanisms responsible for high photosynthetic rates in sclerophyllous C3 plants are unclear. In the present study, we examined photosynthetic characteristics in two high-photosynthesis plants (the sclerophyllous Eucalyptus camaldulensis and the herbaceous Nicotiana tabacum ) using measurements of gas exchange and chlorophyll fluorescence. Under saturating light intensities, both species had similar rates of CO2 assimilation at 400 μmol mol-1 CO2 ( A400 ). However, E. camaldulensis exhibited significantly lower gm and chloroplast CO2 concentration ( Cc ) than N. tabacum . A quantitative analysis revealed that, in E. camaldulensis , the gm limitation was the most constraining factor for photosynthesis. By comparison, in N. tabacum , the biochemical limitation was the strongest, followed by gm and gs limitations. In conjunction with a lower Cc , E. camaldulensis up-regulated the capacities of photorespiratory pathway and alternative electron flow. Furthermore, the rate of alternative electron flow was positively correlated with the rates of photorespiration and ATP supply from other flexible mechanisms, suggesting the important roles of photorespiratory pathway, and alternative electron flow in sustaining high rate of photosynthesis in E. camaldulensis . These results highlight the different mechanisms used to maintain high rates of photosynthesis in the sclerophyllous E. camaldulensis and the herbaceous N. tabacum .- Published
- 2016
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30. Novel H7N2 and H5N6 Avian Influenza A Viruses in Sentinel Chickens: A Sentinel Chicken Surveillance Study.
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Zhao T, Qian YH, Chen SH, Wang GL, Wu MN, Huang Y, Ma GY, Fang LQ, Gray GC, Lu B, Tong YG, Ma MJ, and Cao WC
- Abstract
In 2014, a sentinel chicken surveillance for avian influenza viruses was conducted in aquatic bird habitat near Wuxi City, Jiangsu Province, China. Two H7N2, one H5N6, and two H9N2 viruses were isolated. Sequence analysis revealed that the H7N2 virus is a novel reassortant of H7N9 and H9N2 viruses and H5N6 virus is a reassortant of H5N1 clade 2.3.4 and H6N6 viruses. Substitutions V186 and L226 (H3 numbering) in the hemagglutinin (HA) gene protein was found in two H7N2 viruses but not in the H5N6 virus. Two A138 and A160 mutations were identified in the HA gene protein of all three viruses but a P128 mutation was only observed in the H5N6 virus. A deletion of 3 and 11 amino acids in the neuraminidase stalk region was found in two H7N2 and H5N6 viruses, respectively. Moreover, a mutation of N31 in M2 protein was observed in both two H7N2 viruses. High similarity of these isolated viruses to viruses previously identified among poultry and humans, suggests that peridomestic aquatic birds may play a role in sustaining novel virus transmission. Therefore, continued surveillance is needed to monitor these avian influenza viruses in wild bird and domestic poultry that may pose a threat to poultry and human health.
- Published
- 2016
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31. Clinical and Virological Characteristics of Ebola Virus Disease Patients Treated With Favipiravir (T-705)-Sierra Leone, 2014.
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Bai CQ, Mu JS, Kargbo D, Song YB, Niu WK, Nie WM, Kanu A, Liu WW, Wang YP, Dafae F, Yan T, Hu Y, Deng YQ, Lu HJ, Yang F, Zhang XG, Sun Y, Cao YX, Su HX, Sun Y, Liu WS, Wang CY, Qian J, Liu L, Wang H, Tong YG, Liu ZY, Chen YS, Wang HQ, Kargbo B, Gao GF, and Jiang JF
- Subjects
- Adolescent, Adult, Female, Hemorrhagic Fever, Ebola epidemiology, Hemorrhagic Fever, Ebola virology, Humans, Kaplan-Meier Estimate, Male, Retrospective Studies, Sierra Leone epidemiology, Viral Load, Young Adult, Amides therapeutic use, Antiviral Agents therapeutic use, Ebolavirus, Hemorrhagic Fever, Ebola drug therapy, Hemorrhagic Fever, Ebola mortality, Pyrazines therapeutic use
- Abstract
Background: During 2014-2015, an outbreak of Ebola virus disease (EVD) swept across parts of West Africa. No approved antiviral drugs are available for Ebola treatment currently., Methods: A retrospective clinical case series was performed for EVD patients in Sierra Leone-China Friendship Hospital. Patients with confirmed EVD were sequentially enrolled and treated with either World Health Organization (WHO)-recommended supportive therapy (control group) from 10 to 30 October, or treated with WHO-recommended therapy plus favipiravir (T-705) from 1 to 10 November 2014. Survival and virological characteristics were observed for 85 patients in the control group and 39 in the T-705 treatment group., Results: The overall survival rate in the T-705 treatment group was higher than that of the control group (56.4% [22/39] vs 35.3% [30/85]; P = .027). Among the 35 patients who finished all designed endpoint observations, the survival rate in the T-705 treatment group (64.8% [11/17]) was higher than that of the control group (27.8% [5/18]). Furthermore, the average survival time of the treatment group (46.9 ± 5.6 days) was longer than that of the control group (28.9 ± 4.7 days). Most symptoms of patients in the treatment group improved significantly. Additionally, 52.9% of patients who received T-705 had a >100-fold viral load reduction, compared with only 16.7% of patients in the control group., Conclusions: Treatment of EVD with T-705 was associated with prolonged survival and markedly reduced viral load, which makes a compelling case for further randomized controlled trials of T-705 for treating EVD., (© The Author 2016. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail journals.permissions@oup.com.)
- Published
- 2016
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32. Rift Valley fever virus imported into China from Angola.
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Liu W, Sun FJ, Tong YG, Zhang SQ, and Cao WC
- Subjects
- Angola epidemiology, Antibodies, Viral blood, China epidemiology, Humans, Male, Middle Aged, Rift Valley Fever epidemiology, Rift Valley Fever virology, Rift Valley fever virus immunology
- Published
- 2016
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33. Characterization of a 2016 Clinical Isolate of Zika Virus in Non-human Primates.
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Li XF, Dong HL, Huang XY, Qiu YF, Wang HJ, Deng YQ, Zhang NN, Ye Q, Zhao H, Liu ZY, Fan H, An XP, Sun SH, Gao B, Fa YZ, Tong YG, Zhang FC, Gao GF, Cao WC, Shi PY, and Qin CF
- Subjects
- Animals, Cell Line, Disease Models, Animal, Fever, Humans, Immunity, Cellular, Immunity, Humoral, Immunohistochemistry, Macaca mulatta, Polymerase Chain Reaction, Primates, RNA, Viral, Viral Tropism, Viremia virology, Zika Virus isolation & purification, Zika Virus Infection diagnosis, Zika Virus Infection immunology, Zika Virus physiology, Zika Virus Infection virology
- Abstract
Animal models are critical to understand disease and to develop countermeasures for the ongoing epidemics of Zika virus (ZIKV). Here we report a non-human primate model using a 2016 contemporary clinical isolate of ZIKV. Upon subcutaneous inoculation, rhesus macaques developed fever and viremia, with robust excretion of ZIKV RNA in urine, saliva, and lacrimal fluid. Necropsy of two infected animals revealed that systematic infections involving central nervous system and visceral organs were established at the acute phrase. ZIKV initially targeted the intestinal tracts, spleen, and parotid glands, and retained in spleen and lymph nodes till 10days post infection. ZIKV-specific immune responses were readily induced in all inoculated animals. The non-human primate model described here provides a valuable platform to study ZIKV pathogenesis and to evaluate vaccine and therapeutics., (Copyright © 2016 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2016
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34. Intra-host dynamics of Ebola virus during 2014.
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Ni M, Chen C, Qian J, Xiao HX, Shi WF, Luo Y, Wang HY, Li Z, Wu J, Xu PS, Chen SH, Wong G, Bi Y, Xia ZP, Li W, Lu HJ, Ma J, Tong YG, Zeng H, Wang SQ, Gao GF, Bo XC, and Liu D
- Subjects
- Alleles, Ebolavirus genetics, Epitopes, B-Lymphocyte genetics, Genome, Viral, Hemorrhagic Fever, Ebola epidemiology, Hemorrhagic Fever, Ebola therapy, High-Throughput Nucleotide Sequencing, Humans, Nucleoproteins genetics, Quasispecies genetics, Viral Matrix Proteins genetics, Ebolavirus physiology, Genetic Variation, Hemorrhagic Fever, Ebola virology, Host-Pathogen Interactions, Polymorphism, Single Nucleotide
- Abstract
Since 2013, West Africa has encountered the largest Ebola virus (EBOV) disease outbreak on record, and Sierra Leone is the worst-affected country, with nearly half of the infections. By means of next-generation sequencing and phylogeographic analysis, the epidemiology and transmission of EBOV have been well elucidated. However, the intra-host dynamics that mainly reflect viral-host interactions still need to be studied. Here, we show a total of 710 intra-host single nucleotide variations (iSNVs) from deep-sequenced samples from EBOV-infected patients, through a well-tailored bioinformatics pipeline. We present a comprehensive distribution of iSNVs during this outbreak and along the EBOV genome. Analyses of iSNV and its allele frequency reveal that VP40 is the most conserved gene during this outbreak, and thus it would be an ideal therapeutic target. In the co-occurring iSNV network, varied iSNV sites present different selection features. Intriguingly, the T-to-C substitutions at the 3'-UTR of the nucleoprotein (NP; positions 3008 and 3011), observed in many patients, result in the upregulation of the transcription of NP through an Ebola mini-genome reporting system. Additionally, no iSNV enrichment within B-cell epitopes of GP has been observed.
- Published
- 2016
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35. Excretion of infectious Zika virus in urine.
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Zhang FC, Li XF, Deng YQ, Tong YG, and Qin CF
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- Adult, Humans, Male, RNA, Viral urine, Zika Virus Infection urine, Zika Virus Infection virology, Zika Virus genetics, Zika Virus Infection diagnosis
- Published
- 2016
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36. Transmission dynamics of Ebola virus disease and intervention effectiveness in Sierra Leone.
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Fang LQ, Yang Y, Jiang JF, Yao HW, Kargbo D, Li XL, Jiang BG, Kargbo B, Tong YG, Wang YW, Liu K, Kamara A, Dafae F, Kanu A, Jiang RR, Sun Y, Sun RX, Chen WJ, Ma MJ, Dean NE, Thomas H, Longini IM Jr, Halloran ME, and Cao WC
- Subjects
- Female, Humans, Male, Sierra Leone epidemiology, Databases, Factual, Ebolavirus, Hemorrhagic Fever, Ebola epidemiology, Hemorrhagic Fever, Ebola therapy, Hemorrhagic Fever, Ebola transmission, Models, Biological
- Abstract
Sierra Leone is the most severely affected country by an unprecedented outbreak of Ebola virus disease (EVD) in West Africa. Although successfully contained, the transmission dynamics of EVD and the impact of interventions in the country remain unclear. We established a database of confirmed and suspected EVD cases from May 2014 to September 2015 in Sierra Leone and mapped the spatiotemporal distribution of cases at the chiefdom level. A Poisson transmission model revealed that the transmissibility at the chiefdom level, estimated as the average number of secondary infections caused by a patient per week, was reduced by 43% [95% confidence interval (CI): 30%, 52%] after October 2014, when the strategic plan of the United Nations Mission for Emergency Ebola Response was initiated, and by 65% (95% CI: 57%, 71%) after the end of December 2014, when 100% case isolation and safe burials were essentially achieved, both compared with before October 2014. Population density, proximity to Ebola treatment centers, cropland coverage, and atmospheric temperature were associated with EVD transmission. The household secondary attack rate (SAR) was estimated to be 0.059 (95% CI: 0.050, 0.070) for the overall outbreak. The household SAR was reduced by 82%, from 0.093 to 0.017, after the nationwide campaign to achieve 100% case isolation and safe burials had been conducted. This study provides a complete overview of the transmission dynamics of the 2014-2015 EVD outbreak in Sierra Leone at both chiefdom and household levels. The interventions implemented in Sierra Leone seem effective in containing the epidemic, particularly in interrupting household transmission.
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- 2016
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37. Effect of the Gall Wasp Leptocybe invasa on Hydraulic Architecture in Eucalyptus camaldulensis Plants.
- Author
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Tong YG, Ding XX, Zhang KC, Yang X, and Huang W
- Abstract
The gall wasp, Leptocybe invasa (Hymenoptera; Eulophidae), is a devastating pest of eucalypt plantations in the Middle East, the Mediterranean basin, Africa, India, South-East Asia, and China. Heavy galling causes the leaves to warp and in extreme cases it may stunt the growth of the trees of Eucalyptus camaldulensis. However, the physiological mechanisms underlying how L. invasa inhibits the growth of plants of E. camaldulensis are unclear. Because the growth rate of plants is mainly dependent on photosynthesis that is largely correlated with hydraulic architecture, we speculate that galling of L. invasa depresses hydraulic conductance of stem and leaf. In the present study, we examined the effects of L. invasa galling on hydraulic architecture and photosynthetic parameters in E. camaldulensis plants. We found that galling of L. invasa significantly decreased stem hydraulic conductance (K stem), midday leaf water potential (Ψmd), minor vein density, and stomatal density (SD). Furthermore, the stomatal conductance (g s), chlorophyll content, CO2 assimilation rate (A n) and photosynthetic electron flow were reduced in infected plants. Therefore, the galling of L. invasa not only declined the water supply from stem to leaves, but also restricted water transport within leaf. As a result, galled plants of E. camaldulensis reduced leaf number, leaf area, SD and g s to balance water supply and transpirational demand. Furthermore, galled plants had lower leaf nitrogen content, leading to decreases in chlorophyll content, CO2 assimilation rate and photosynthetic electron flow. These results indicate that the change in hydraulic architecture is responsible for the inhibition of growth rate in galled plants.
- Published
- 2016
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38. Fatal pneumonia cases caused by human adenovirus 55 in immunocompetent adults.
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Zhang SY, Luo YP, Huang DD, Fan H, Lu QB, Wo Y, Chen G, Zhang XA, Li Y, Tong YG, Cao WC, and Liu W
- Subjects
- Adenovirus Infections, Human diagnosis, Adenoviruses, Human genetics, Adult, China epidemiology, Fatal Outcome, Humans, Male, Phylogeny, Pneumonia, Viral diagnosis, Respiratory Insufficiency, Sequence Analysis, DNA, Adenovirus Infections, Human virology, Adenoviruses, Human pathogenicity, Immunocompetence, Pneumonia, Viral virology
- Abstract
Background: Adenovirus is a frequent cause of mild self-limiting upper respiratory tract infection, gastroenteritis, and conjunctivitis. Severe or fatal infection mostly occurs in newborn, elderly or immunocompromised persons., Methods: Fatal adenovirus pneumonia in three immunocompetent adults was identified. The clinical data and virological findings were reported from patients. Additional review of recently recorded fatal patients with adenovirus infection was carried out., Results: The patients presented with sudden onset respiratory distress that progressed rapidly to respiratory failure and death. Human adenovirus (HAdV)-55 was detected in both nasopharyngeal aspirates and serum samples in all three cases, and moreover detected in lung, liver, and kidney in one case. In another case, remarkably elevated aspartate aminotransferase, alanine transaminase, and lactate dehydrogenase were identified. Three HAdV-55 strains were isolated and genome sequencing revealed a high similarity with other strains from mild infection., Conclusions: Fatal infection with HAdv-55 might occur in otherwise healthy adults. Diagnosis of adenovirus infection should be considered in patients with severe pneumonia yielding negative bacterial culture and presenting no response to antibiotic therapy.
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- 2016
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39. A Systematic Review of the Anticancer Properties of Compounds Isolated from Licorice (Gancao).
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Tang ZH, Li T, Tong YG, Chen XJ, Chen XP, Wang YT, and Lu JJ
- Subjects
- Animals, Antineoplastic Agents chemistry, Humans, Antineoplastic Agents pharmacology, Drugs, Chinese Herbal pharmacology, Glycyrrhiza chemistry
- Abstract
Licorice (Gancao in Chinese) has been used worldwide as a botanical source in medicine and as a sweetening agent in food products for thousands of years. Triterpene saponins and flavonoids are its main ingredients that exhibit a variety of biological activities, including hepatoprotective, antiulcer, anti-inflammatory, antiviral and anticancer effects among others. This review attempts to summarize the current knowledge on the anticancer properties and mechanisms of the compounds isolated from licorice and obtain new insights for further research and development of licorice. A broad spectrum of in vitro and in vivo studies have recently demonstrated that the mixed extracts and purified compounds from licorice exhibit evident anticancer properties by inhibition of proliferation, induction of cell cycle arrest, apoptosis, autophagy, differentiation, suppression of metastasis, angiogenesis, and sensitization of chemotherapy or radiotherapy. A combined treatment of licorice compounds and clinical chemotherapy drugs remarkably enhances anticancer effects and reduces the side effects of chemotherapeutics. Furthermore, glycyrrhizic acid and glycyrrhetinic acid in licorice have been indicated to present obvious liver-targeting effects in targeted drug delivery systems for hepatocellular carcinoma treatment., (Georg Thieme Verlag KG Stuttgart · New York.)
- Published
- 2015
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40. Elusive liver factor that causes pancreatic α cell hyperplasia: A review of literature.
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Yu R, Zheng Y, Lucas MB, and Tong YG
- Abstract
Tumors and cancers of the gastrointestinal tract and pancreas are commonly derived from precursor lesions so that understanding the physiological, cellular, and molecular mechanisms underlying the pathogenesis of precursor lesions is critical for the prevention and treatment of those neoplasms. Pancreatic neuroendocrine tumors (PNETs) can also be derived from precursor lesions. Pancreatic α cell hyperplasia (ACH), a specific and overwhelming increase in the number of α cells, is a precursor lesion leading to PNET pathogenesis. One of the 3 subtypes of ACH, reactive ACH is caused by glucagon signaling disruption and invariably evolves into PNETs. In this article, the existing work on the mechanisms underlying reactive ACH pathogenesis is reviewed. It is clear that the liver secretes a humoral factor regulating α cell numbers but the identity of the liver factor remains elusive. Potential approaches to identify the liver factor are discussed.
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- 2015
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41. Erratum: Genetic diversity and evolutionary dynamics of Ebola virus in Sierra Leone.
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Tong YG, Shi WF, Liu D, Qian J, Liang L, Bo XC, Liu J, Ren HG, Fan H, Ni M, Sun Y, Jin Y, Teng Y, Li Z, Kargbo D, Dafae F, Kanu A, Chen CC, Lan ZH, Jiang H, Luo Y, Lu HJ, Zhang XG, Yang F, Hu Y, Cao YX, Deng YQ, Su HX, Sun Y, Liu WS, Wang Z, Wang CY, Bu ZY, Guo ZD, Zhang LB, Nie WM, Bai CQ, Sun CH, An XP, Xu PS, Zhang XL, Huang Y, Mi ZQ, Yu D, Yao HW, Feng Y, Xia ZP, Zheng XX, Yang ST, Lu B, Jiang JF, Kargbo B, He FC, Gao GF, and Cao WC
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- 2015
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42. Identification of Bufavirus-1 and Bufavirus-3 in Feces of Patients with Acute Diarrhea, China.
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Huang DD, Wang W, Lu QB, Zhao J, Guo CT, Wang HY, Zhang XA, Tong YG, Liu W, and Cao WC
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Base Sequence, Child, Child, Preschool, China, Demography, Humans, Infant, Infant, Newborn, Likelihood Functions, Middle Aged, Phylogeny, Young Adult, Diarrhea virology, Feces virology, Sapovirus physiology
- Abstract
Bufavirus (BuV) is a newly discovered human parvovirus that has been detected in some countries. The current study was designed to understand the epidemic of BuV in China. Totally 1877 fecal specimens were collected from pediatric and adult patients with acute diarrhea in two large hospitals from 2010 to 2014. BuV was detected in 0.5% (9/1877) of the fecal samples by PCR and subsequent sequencing. The positive patients had a wide age range from 1 month through 60 years (median 24 years old) and 6 were male. A geographic specific pattern was obvious, with significantly higher frequency of BuV presented in Northern than in Southern China. Four BuV-1 and five BuV-3 were determined. Mixed-infections of BuV with sapovirus and novavirus were found in 2 cases, respectively. A temporal clustering was identified, with most positive detection focused in the cold weather. These findings have expanded the current knowledge on the geographic boundaries of BuV circulation.
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- 2015
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43. Genetic diversity and evolutionary dynamics of Ebola virus in Sierra Leone.
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Tong YG, Shi WF, Liu D, Qian J, Liang L, Bo XC, Liu J, Ren HG, Fan H, Ni M, Sun Y, Jin Y, Teng Y, Li Z, Kargbo D, Dafae F, Kanu A, Chen CC, Lan ZH, Jiang H, Luo Y, Lu HJ, Zhang XG, Yang F, Hu Y, Cao YX, Deng YQ, Su HX, Sun Y, Liu WS, Wang Z, Wang CY, Bu ZY, Guo ZD, Zhang LB, Nie WM, Bai CQ, Sun CH, An XP, Xu PS, Zhang XL, Huang Y, Mi ZQ, Yu D, Yao HW, Feng Y, Xia ZP, Zheng XX, Yang ST, Lu B, Jiang JF, Kargbo B, He FC, Gao GF, and Cao WC
- Subjects
- Base Sequence, Disease Outbreaks statistics & numerical data, Ebolavirus isolation & purification, Epidemiological Monitoring, Genome, Viral genetics, Hemorrhagic Fever, Ebola transmission, Humans, Molecular Epidemiology, Mutation Rate, Phylogeny, Phylogeography, Sierra Leone epidemiology, Ebolavirus genetics, Evolution, Molecular, Genetic Variation genetics, Hemorrhagic Fever, Ebola epidemiology, Hemorrhagic Fever, Ebola virology
- Abstract
A novel Ebola virus (EBOV) first identified in March 2014 has infected more than 25,000 people in West Africa, resulting in more than 10,000 deaths. Preliminary analyses of genome sequences of 81 EBOV collected from March to June 2014 from Guinea and Sierra Leone suggest that the 2014 EBOV originated from an independent transmission event from its natural reservoir followed by sustained human-to-human infections. It has been reported that the EBOV genome variation might have an effect on the efficacy of sequence-based virus detection and candidate therapeutics. However, only limited viral information has been available since July 2014, when the outbreak entered a rapid growth phase. Here we describe 175 full-length EBOV genome sequences from five severely stricken districts in Sierra Leone from 28 September to 11 November 2014. We found that the 2014 EBOV has become more phylogenetically and genetically diverse from July to November 2014, characterized by the emergence of multiple novel lineages. The substitution rate for the 2014 EBOV was estimated to be 1.23 × 10(-3) substitutions per site per year (95% highest posterior density interval, 1.04 × 10(-3) to 1.41 × 10(-3) substitutions per site per year), approximating to that observed between previous EBOV outbreaks. The sharp increase in genetic diversity of the 2014 EBOV warrants extensive EBOV surveillance in Sierra Leone, Guinea and Liberia to better understand the viral evolution and transmission dynamics of the ongoing outbreak. These data will facilitate the international efforts to develop vaccines and therapeutics.
- Published
- 2015
- Full Text
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44. Transmissibility of tuberculosis among school contacts: an outbreak investigation in a boarding middle school, China.
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Ma MJ, Yang Y, Wang HB, Zhu YF, Fang LQ, An XP, Wan KL, Whalen CC, Yang XX, Lauzardo M, Zhang ZY, Cao JF, Tong YG, Dai EH, and Cao WC
- Subjects
- Adolescent, Adult, BCG Vaccine therapeutic use, China epidemiology, Female, Humans, Male, Minisatellite Repeats genetics, Models, Statistical, Mycobacterium tuberculosis pathogenicity, Phylogeny, Polymorphism, Single Nucleotide genetics, Risk Factors, Tuberculin Test, Tuberculosis, Pulmonary epidemiology, Tuberculosis, Pulmonary microbiology, Tuberculosis, Pulmonary prevention & control, Young Adult, Disease Outbreaks statistics & numerical data, Mycobacterium tuberculosis genetics, School Health Services statistics & numerical data, Tuberculosis, Pulmonary transmission
- Abstract
Tuberculosis (TB) outbreak occurred in a boarding middle school of China. We explored its probable sources and quantified the transmissibility and pathogenicity of TB. Clinical evaluation, tuberculin skin testing and chest radiography were conducted to identify TB cases. Mycobacterium tuberculosis isolates underwent genotyping analysis to identify the outbreak source. A chain-binomial transmission model was used to evaluate transmissibility and pathogenicity of TB. A total of 46 active cases were ascertained among 258 students and 15 teachers/staff, an attack rate of 16.8%. Genetic analyses revealed two groups of M. tuberculosis cocirculating during the outbreak and possible importation from local communities. Secondary attack rates among students were 4.1% (2.9%, 5.3%) within grade and 7.9% (4.9%, 11%) within class. An active TB case was estimated to infect 8.4 (7.2, 9.6) susceptible people on average. The smear-positive cases were 28 (8, 101) times as infective as smear-negative cases. Previous BCG vaccination could reduce the probability of developing symptoms after infection by 70% (1.4%, 91%). The integration of clinical evaluation, genetic sequencing, and statistical modeling greatly enhanced our understanding of TB transmission dynamics. Timely diagnosis of smear-positive cases, especially in the early phase of the outbreak, is the key to preventing further spread among close contacts., (Copyright © 2015 Elsevier B.V. All rights reserved.)
- Published
- 2015
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45. The Homeobox Genes of Caenorhabditis elegans and Insights into Their Spatio-Temporal Expression Dynamics during Embryogenesis.
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Hench J, Henriksson J, Abou-Zied AM, Lüppert M, Dethlefsen J, Mukherjee K, Tong YG, Tang L, Gangishetti U, Baillie DL, and Bürglin TR
- Subjects
- Amino Acid Sequence, Animals, Caenorhabditis elegans embryology, Caenorhabditis elegans Proteins chemistry, Caenorhabditis elegans Proteins physiology, Embryonic Development genetics, Gene Expression Profiling, Molecular Sequence Data, Organisms, Genetically Modified embryology, Protein Structure, Tertiary, Sequence Alignment, Terminology as Topic, Caenorhabditis elegans genetics, Caenorhabditis elegans Proteins genetics, Genes, Homeobox
- Abstract
Homeobox genes play crucial roles for the development of multicellular eukaryotes. We have generated a revised list of all homeobox genes for Caenorhabditis elegans and provide a nomenclature for the previously unnamed ones. We show that, out of 103 homeobox genes, 70 are co-orthologous to human homeobox genes. 14 are highly divergent, lacking an obvious ortholog even in other Caenorhabditis species. One of these homeobox genes encodes 12 homeodomains, while three other highly divergent homeobox genes encode a novel type of double homeodomain, termed HOCHOB. To understand how transcription factors regulate cell fate during development, precise spatio-temporal expression data need to be obtained. Using a new imaging framework that we developed, Endrov, we have generated spatio-temporal expression profiles during embryogenesis of over 60 homeobox genes, as well as a number of other developmental control genes using GFP reporters. We used dynamic feedback during recording to automatically adjust the camera exposure time in order to increase the dynamic range beyond the limitations of the camera. We have applied the new framework to examine homeobox gene expression patterns and provide an analysis of these patterns. The methods we developed to analyze and quantify expression data are not only suitable for C. elegans, but can be applied to other model systems or even to tissue culture systems.
- Published
- 2015
- Full Text
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46. Commissural axonal corridors instruct neuronal migration in the mouse spinal cord.
- Author
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Laumonnerie C, Tong YG, Alstermark H, and Wilson SI
- Subjects
- Animals, Cell Body, Cells, Cultured, Chick Embryo, DCC Receptor, Electroporation, Female, Gene Expression Regulation physiology, Male, Membrane Proteins genetics, Membrane Proteins metabolism, Mice, Nerve Growth Factors genetics, Nerve Growth Factors metabolism, Nerve Tissue Proteins genetics, Nerve Tissue Proteins metabolism, Netrin-1, Plasmids, Receptors, Cell Surface genetics, Receptors, Cell Surface metabolism, Reverse Transcriptase Polymerase Chain Reaction, Tumor Suppressor Proteins genetics, Tumor Suppressor Proteins metabolism, Cell Movement physiology, Commissural Interneurons physiology, Neurons physiology, Spinal Cord cytology, Spinal Cord embryology
- Abstract
Unravelling how neurons are guided during vertebrate embryonic development has wide implications for understanding the assembly of the nervous system. During embryogenesis, migration of neuronal cell bodies and axons occurs simultaneously, but to what degree they influence each other's development remains obscure. We show here that within the mouse embryonic spinal cord, commissural axons bisect, delimit or preconfigure ventral interneuron cell body position. Furthermore, genetic disruption of commissural axons results in abnormal ventral interneuron cell body positioning. These data suggest that commissural axonal fascicles instruct cell body position by acting either as border landmarks (axon-restricted migration), which to our knowledge has not been previously addressed, or acting as cellular guides. This study in the developing spinal cord highlights an important function for the interaction of cell bodies and axons, and provides a conceptual proof of principle that is likely to have overarching implications for the development of neuronal architecture.
- Published
- 2015
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47. Homogenized finite element analysis on effective elastoplastic mechanical behaviors of composite with imperfect interfaces.
- Author
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Jiang WG, Zhong RZ, Qin QH, and Tong YG
- Subjects
- Algorithms, Models, Theoretical
- Abstract
A three-dimensional (3D) representative volume element (RVE) model was developed for analyzing effective mechanical behavior of fiber-reinforced ceramic matrix composites with imperfect interfaces. In the model, the fiber is assumed to be perfectly elastic until its tensile strength, and the ceramic material is modeled by an elasto-plastic Drucker-Prager constitutive law. The RVE model is then used to study the elastic properties and the tensile strength of composites with imperfect interfaces and validated through experiments. The imperfect interfaces between the fiber and the matrix are taken into account by introducing some cohesive contact surfaces. The influences of the interface on the elastic constants and the tensile strengths are examined through these interface models.
- Published
- 2014
- Full Text
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48. Glycyrrhetinic Acid triggers a protective autophagy by activation of extracellular regulated protein kinases in hepatocellular carcinoma cells.
- Author
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Tang ZH, Li T, Chang LL, Zhu H, Tong YG, Chen XP, Wang YT, and Lu JJ
- Subjects
- Apoptosis drug effects, Carcinoma, Hepatocellular genetics, Carcinoma, Hepatocellular physiopathology, Extracellular Signal-Regulated MAP Kinases genetics, Hep G2 Cells, Humans, Liver Neoplasms genetics, Liver Neoplasms physiopathology, Autophagy drug effects, Carcinoma, Hepatocellular enzymology, Drugs, Chinese Herbal pharmacology, Extracellular Signal-Regulated MAP Kinases metabolism, Glycyrrhetinic Acid pharmacology, Glycyrrhiza uralensis chemistry, Liver Neoplasms enzymology, Protective Agents pharmacology
- Abstract
Glycyrrhetinic acid (GA), one of the main constituents of the famous Chinese medicinal herb and food additive licorice (Glycyrrhiza uralensis Fisch), has been indicated to possess potential anticancer effects and is widely utilized in hepatocellular carcinoma (HCC) targeted drug delivery systems (TDDS) due to the highly expressed target binding sites of GA on HCC cells. This study found that GA reduced the cell viability, increased the release of lactate dehydrogenase, and enhanced the expression of Bax, cleaved caspase-3, and LC3-II in HCC cells. The GA-triggered autophagy has been further confirmed by monodansylcadaverine staining as well as transmission electron microscopy analysis. The cell viability was obviously decreased whereas the expression of cleaved caspases was significantly increased when inhibition of autophagy by choloroquine or bafilomycin A1, suggesting that GA triggered a protective autophagy. Extracellular regulated protein kinase (ERK) was activated after treatment with GA in HepG2 cells and pretreatment with U0126 or PD98059, the MEK inhibitors, reversed GA-triggered autophagy as evidenced by decreased expression of LC3-II and formation of autophagosomes, respectively. Furthermore, GA-induced cell death and apoptosis were enhanced after pretreatment with PD98059. This is the first report that GA triggers a protective autophagy in HCC cells via activation of ERK, which might attenuate the anticancer effects of GA or chemotherapeutic drugs loaded with GA-modified TDDS.
- Published
- 2014
- Full Text
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49. Discovery of Rickettsia species in Dermacentor niveus Neumann ticks by investigating the diversity of bacterial communities.
- Author
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Zhuang L, Wang CY, Tong YG, Tang F, Yang H, Liu W, and Cao WC
- Subjects
- Animals, Phylogeny, Rickettsia classification, Rickettsia genetics, Dermacentor microbiology, Rickettsia isolation & purification
- Abstract
Ticks (Dermacentor niveus Neumann) were collected from Tacheng, Xinjiang Uygur Autonomous Region, and their bacterial diversity was investigated using the 16S RNA gene library method from one pooled sample. A total of 452 clones was successfully sequenced and assigned to 4 phyla. The dominant phylum was the Proteobacteria, accounting for 62.8% of all the clones of the 16S rRNA gene at the confidence level 80%. The other sequences were assigned to the phyla Bacteroidetes, Firmicutes, Actinobacteria and accounted for 13.5%, 12.4%, and 11.3%, respectively. These results provide an insight into the bacterial diversity associated with D. niveus ticks in the natural environment of Tacheng. They indicate the occurrence of Rickettsia raoultii and Rickettsia slovaca in D. niveus ticks in this area, and as a consequence, cases of TIBOLA/DEBONEL may occur (tick-borne lymphadenopathy/Dermacentor-borne necrosis erythema and lymphadenopathy)., (Copyright © 2014. Published by Elsevier GmbH.)
- Published
- 2014
- Full Text
- View/download PDF
50. Genomics in personalized cancer medicine and its impact on early drug development in China: report from the 6th Annual Meeting of the US Chinese Anti-Cancer Association (USCACA) at the 50th ASCO Annual Meeting.
- Author
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Zhang W, Cheng SY, Hou LF, Yan L, and Tong YG
- Subjects
- Antineoplastic Agents, Awards and Prizes, Chicago, China, Genomics, Humans, Neoplasms, Societies, Medical, United States, Drug Discovery, Medical Oncology, Precision Medicine
- Abstract
The 6th Annual Meeting of the United States Chinese Anti-Cancer Association (USCACA) was held in conjunction with the 50th Annual Meeting of American Society of Clinical Oncology (ASCO) on May 30, 2014 in Chicago, Illinois, the United States of America. With a focus on personalized medicine, the conference featured novel approaches to investigate genomic aberrations in cancer cells and innovative clinical trial designs to expedite cancer drug development in biomarker-defined patient populations. A panel discussion further provided in-depth advice on advancing development of personalized cancer medicines in China. The conference also summarized USCACA key initiatives and accomplishments, including two awards designated to recognize young investigators from China for their achievements and to support their training in the United States. As an effort to promote international collaboration, USCACA will team up with Chinese Society of Clinical Oncology (CSCO) to host a joint session on "Breakthrough Cancer Medicines" at the upcoming CSCO Annual Meeting on September 20th, 2014 in Xiamen, China.
- Published
- 2014
- Full Text
- View/download PDF
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