35 results on '"Tong Sun Kobilka"'
Search Results
2. Structural basis for GLP-1 receptor activation by LY3502970, an orally active nonpeptide agonist
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Hitoshi Yoshino, Takahiro Kawai, Dan Feng, Shunsuke Nagao, Francis S. Willard, Kyle W. Sloop, Tong Sun Kobilka, Aaron D. Showalter, Yoshiki Kawabe, David B. Wainscott, Brian A. Droz, Matthew P. Coghlan, Brian K. Kobilka, Masanori Fukazawa, Yoshiyuki Suzuki, and Bingfa Sun
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Male ,Models, Molecular ,0301 basic medicine ,Agonist ,Swine ,type 2 diabetes mellitus ,G protein ,medicine.drug_class ,cryoelectron microscopy ,Administration, Oral ,Aminopyridines ,Mice, Transgenic ,030209 endocrinology & metabolism ,Pharmacology ,Incretins ,Partial agonist ,Glucagon-Like Peptide-1 Receptor ,LY3502970 ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Protein Domains ,Species Specificity ,medicine ,Animals ,Humans ,Hypoglycemic Agents ,Receptor ,Glucagon-like peptide 1 receptor ,G protein-coupled receptor ,Multidisciplinary ,Chemistry ,Tryptophan ,Biological Sciences ,OWL833 ,Rats ,Macaca fascicularis ,HEK293 Cells ,030104 developmental biology ,Mechanism of action ,Benzamides ,Mutagenesis, Site-Directed ,Anti-Obesity Agents ,medicine.symptom ,Exenatide ,medicine.drug - Abstract
Significance Glucagon-like peptide-1 receptor agonists have become established as a leading class of diabetes medications. However, these peptide-based drugs are administered by subcutaneous injection or, in one case, by a complex oral dosing regimen. We now report the discovery of LY3502970, a potent and selective small-molecule GLP-1R agonist. LY3502970 exhibits preclinical pharmacology equivalent to a marketed injectable GLP-1R agonist and possesses pharmacokinetic properties compatible with oral dosing in humans. Cryoelectron microscopy (cryo-EM) studies reveal an ECD-driven receptor binding mode for LY3502970 that provides a favorable pharmacological profile., Glucagon-like peptide-1 receptor (GLP-1R) agonists are efficacious antidiabetic medications that work by enhancing glucose-dependent insulin secretion and improving energy balance. Currently approved GLP-1R agonists are peptide based, and it has proven difficult to obtain small-molecule activators possessing optimal pharmaceutical properties. We report the discovery and mechanism of action of LY3502970 (OWL833), a nonpeptide GLP-1R agonist. LY3502970 is a partial agonist, biased toward G protein activation over β-arrestin recruitment at the GLP-1R. The molecule is highly potent and selective against other class B G protein–coupled receptors (GPCRs) with a pharmacokinetic profile favorable for oral administration. A high-resolution structure of LY3502970 in complex with active-state GLP-1R revealed a unique binding pocket in the upper helical bundle where the compound is bound by the extracellular domain (ECD), extracellular loop 2, and transmembrane helices 1, 2, 3, and 7. This mechanism creates a distinct receptor conformation that may explain the partial agonism and biased signaling of the compound. Further, interaction between LY3502970 and the primate-specific Trp33 of the ECD informs species selective activity for the molecule. In efficacy studies, oral administration of LY3502970 resulted in glucose lowering in humanized GLP-1R transgenic mice and insulinotropic and hypophagic effects in nonhuman primates, demonstrating an effect size in both models comparable to injectable exenatide. Together, this work determined the molecular basis for the activity of an oral agent being developed for the treatment of type 2 diabetes mellitus, offering insights into the activation of class B GPCRs by nonpeptide ligands.
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- 2020
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3. Structural insights into probe-dependent positive allosterism of the GLP-1 receptor
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Betty Chau, Joseph D. Ho, Francisco J Agejas, Francis S. Willard, Ana B. Bueno, Tong Sun Kobilka, Brian K. Kobilka, Isabel Rojo, James Ficorilli, Bingfa Sun, Aaron D. Showalter, Qi Chen, Cynthia Stutsman, Dan Feng, Kyle W. Sloop, Michal Vieth, Alma Jiménez, David B. Wainscott, and Graham R Cumming
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0303 health sciences ,Allosteric modulator ,Chemistry ,Drug discovery ,030302 biochemistry & molecular biology ,Allosteric regulation ,Cell Biology ,Ligand (biochemistry) ,03 medical and health sciences ,Heterotrimeric G protein ,Biophysics ,Receptor ,Molecular Biology ,hormones, hormone substitutes, and hormone antagonists ,Glucagon-like peptide 1 receptor ,030304 developmental biology ,G protein-coupled receptor - Abstract
Drugs that promote the association of protein complexes are an emerging therapeutic strategy. We report discovery of a G protein-coupled receptor (GPCR) ligand that stabilizes an active state conformation by cooperatively binding both the receptor and orthosteric ligand, thereby acting as a 'molecular glue'. LSN3160440 is a positive allosteric modulator of the GLP-1R optimized to increase the affinity and efficacy of GLP-1(9-36), a proteolytic product of GLP-1(7-36). The compound enhances insulin secretion in a glucose-, ligand- and GLP-1R-dependent manner. Cryo-electron microscopy determined the structure of the GLP-1R bound to LSN3160440 in complex with GLP-1 and heterotrimeric Gs. The modulator binds high in the helical bundle at an interface between TM1 and TM2, allowing access to the peptide ligand. Pharmacological characterization showed strong probe dependence of LSN3160440 for GLP-1(9-36) versus oxyntomodulin that is driven by a single residue. Our findings expand protein-protein modulation drug discovery to uncompetitive, active state stabilizers for peptide hormone receptors.
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- 2020
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4. Structural determinants of dual incretin receptor agonism by tirzepatide
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Bingfa Sun, Francis S. Willard, Dan Feng, Jorge Alsina-Fernandez, Qi Chen, Michal Vieth, Joseph D. Ho, Aaron D. Showalter, Cynthia Stutsman, Liyun Ding, Todd M. Suter, James D. Dunbar, John W. Carpenter, Faiz Ahmad Mohammed, Eitaro Aihara, Robert A. Brown, Ana B. Bueno, Paul J. Emmerson, Julie S. Moyers, Tong Sun Kobilka, Matthew P. Coghlan, Brian K. Kobilka, and Kyle W. Sloop
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endocrine system ,Multidisciplinary ,Diabetes Mellitus, Type 2 ,digestive, oral, and skin physiology ,Humans ,Gastric Inhibitory Polypeptide ,Incretins ,hormones, hormone substitutes, and hormone antagonists ,Glucagon-Like Peptide-1 Receptor ,Receptors, Gastrointestinal Hormone - Abstract
Significance Tirzepatide is a dual agonist of the glucose-dependent insulinotropic polypeptide receptor (GIPR) and the glucagon-like peptide-1 receptor (GLP-1R), which are incretin receptors that regulate carbohydrate metabolism. This investigational agent has proven superior to selective GLP-1R agonists in clinical trials in subjects with type 2 diabetes mellitus. Intriguingly, although tirzepatide closely resembles native GIP in how it activates the GIPR, it differs markedly from GLP-1 in its activation of the GLP-1R, resulting in less agonist-induced receptor desensitization. We report how cryogenic electron microscopy and molecular dynamics simulations inform the structural basis for the unique pharmacology of tirzepatide. These studies reveal the extent to which fatty acid modification, combined with amino acid sequence, determines the mode of action of a multireceptor agonist.
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- 2022
5. Crystal structure of dopamine D1 receptor in complex with G protein and a non-catechol agonist
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Sebastian Kelm, Bingfa Sun, Inbar Fish, Matthew Ling-Hon Chu, Florence Lebon, Zara A. Sands, Martyn Wood, Dan Feng, Tong Sun Kobilka, Brian K. Kobilka, Silvia Lovera, Tom Ceska, and Anne Valade
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0301 basic medicine ,Agonist ,Models, Molecular ,medicine.drug_class ,G protein ,Protein Conformation ,Science ,General Physics and Astronomy ,In Vitro Techniques ,Molecular Dynamics Simulation ,Crystallography, X-Ray ,Ligands ,Protein Engineering ,General Biochemistry, Genetics and Molecular Biology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Dopamine receptor D1 ,Receptor pharmacology ,In vivo ,Dopamine ,medicine ,Extracellular ,GTP-Binding Protein alpha Subunits, Gs ,Humans ,Receptor ,Protein Structure, Quaternary ,X-ray crystallography ,Multidisciplinary ,Binding Sites ,Chemistry ,Receptors, Dopamine D1 ,General Chemistry ,Ligand (biochemistry) ,Recombinant Proteins ,030104 developmental biology ,Biophysics ,Structural biology ,030217 neurology & neurosurgery ,medicine.drug ,Protein Binding - Abstract
Dopamine D1 receptor (D1R) is an important drug target implicated in many psychiatric and neurological disorders. Selective agonism of D1R are sought to be the therapeutic strategy for these disorders. Most selective D1R agonists share a dopamine-like catechol moiety in their molecular structure, and their therapeutic potential is therefore limited by poor pharmacological properties in vivo. Recently, a class of non-catechol D1R selective agonists with a distinct scaffold and pharmacological properties were reported. Here, we report the crystal structure of D1R in complex with stimulatory G protein (Gs) and a non-catechol agonist Compound 1 at 3.8 Å resolution. The structure reveals the ligand bound to D1R in an extended conformation, spanning from the orthosteric site to extracellular loop 2 (ECL2). Structural analysis reveals that the unique features of D1R ligand binding pocket explains the remarkable selectivity of this scaffold for D1R over other aminergic receptors, and sheds light on the mechanism for D1R activation by the non-catechol agonist., Recently, a class of non-catechol Dopamine D1 receptor (D1R) selective agonists with novel scaffold and improved pharmacological properties were reported. Here, authors report the crystal structure of D1R in complex with stimulatory G protein (Gs) and a non-catechol agonist Compound 1 which explains the selectivity of this scaffold for D1R over other aminergic receptors and the mechanism of activating D1R.
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- 2021
6. Structural insights into the activation of metabotropic glutamate receptors
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Tong Sun Kobilka, Yan Zhang, William I. Weis, Michael J. Robertson, Matthew Ling-Hon Chu, Brian K. Kobilka, Toon Laermans, Hongli Hu, Somnath Dutta, Georgios Skiniotis, Jesper Mosolff Mathiesen, Dan Feng, Antoine Koehl, Jeffrey T. Tarrasch, Rasmus Fonseca, Jan Steyaert, Bingfa Sun, Structural Biology Brussels, and Department of Bio-engineering Sciences
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0301 basic medicine ,Agonist ,Multidisciplinary ,Chemistry ,medicine.drug_class ,Protein domain ,Allosteric regulation ,3. Good health ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Membrane protein ,general ,Metabotropic glutamate receptor ,Extracellular ,Biophysics ,medicine ,Signal transduction ,Receptor ,030217 neurology & neurosurgery - Abstract
Metabotropic glutamate receptors are family C G-protein-coupled receptors. They form obligate dimers and possess extracellular ligand-binding Venus flytrap domains, which are linked by cysteine-rich domains to their 7-transmembrane domains. Spectroscopic studies show that signalling is a dynamic process, in which large-scale conformational changes underlie the transmission of signals from the extracellular Venus flytraps to the G protein-coupling domains-the 7-transmembrane domains-in the membrane. Here, using a combination of X-ray crystallography, cryo-electron microscopy and signalling studies, we present a structural framework for the activation mechanism of metabotropic glutamate receptor subtype 5. Our results show that agonist binding at the Venus flytraps leads to a compaction of the intersubunit dimer interface, thereby bringing the cysteine-rich domains into close proximity. Interactions between the cysteine-rich domains and the second extracellular loops of the receptor enable the rigid-body repositioning of the 7-transmembrane domains, which come into contact with each other to initiate signalling.
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- 2019
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7. Cryo-EM structure of the activated GLP-1 receptor in complex with G protein
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Matthew Ling-Hon Chu, Jeffrey T. Tarrasch, Dan Feng, Qianhui Qu, Hongli Hu, Shane Li, Georgios Skiniotis, Brian K. Kobilka, Bingfa Sun, Yan Zhang, and Tong Sun Kobilka
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Models, Molecular ,0301 basic medicine ,Protein domain ,Glucagon-Like Peptide-1 Receptor ,Article ,03 medical and health sciences ,0302 clinical medicine ,Protein Domains ,Glucagon-Like Peptide 1 ,GTP-Binding Protein alpha Subunits, Gs ,Animals ,5-HT5A receptor ,Receptor ,Glucagon-like peptide 1 receptor ,G protein-coupled receptor ,G protein-coupled receptor kinase ,Multidisciplinary ,Chemistry ,Cryoelectron Microscopy ,Transmembrane protein ,Cell biology ,Transmembrane domain ,030104 developmental biology ,Rabbits ,hormones, hormone substitutes, and hormone antagonists ,030217 neurology & neurosurgery - Abstract
Glucagon-like peptide 1 (GLP-1) is a hormone with essential roles in regulating insulin secretion, carbohydrate metabolism and appetite. GLP-1 effects are mediated through binding to the GLP-1 receptor (GLP-1R), a class B G-protein-coupled receptor (GPCR) that signals primarily through the stimulatory G protein Gs. Class B GPCRs are important therapeutic targets; however, our understanding of their mechanism of action is limited by the lack of structural information on activated and full-length receptors. Here we report the cryo-electron microscopy structure of the peptide-activated GLP-1R-Gs complex at near atomic resolution. The peptide is clasped between the N-terminal domain and the transmembrane core of the receptor, and further stabilized by extracellular loops. Conformational changes in the transmembrane domain result in a sharp kink in the middle of transmembrane helix 6, which pivots its intracellular half outward to accommodate the α5-helix of the Ras-like domain of Gs. These results provide a structural framework for understanding class B GPCR activation through hormone binding.
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- 2017
8. Crystal structure of the adenosine A 2A receptor bound to an antagonist reveals a potential allosteric pocket
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Zara A. Sands, Florence Lebon, Matthew Ling-Hon Chu, Tong Sun Kobilka, Joël Mercier, Priti Bachhawat, Tom Ceska, Brian K. Kobilka, Martyn Wood, and Bingfa Sun
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0301 basic medicine ,Multidisciplinary ,Chemistry ,Ligand ,Stereochemistry ,Allosteric regulation ,Antagonist ,Adenosine A2A receptor ,Crystal structure ,Adenosine ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,medicine ,Tyrosine ,Receptor ,030217 neurology & neurosurgery ,medicine.drug - Abstract
The adenosine A2A receptor (A2AR) has long been implicated in cardiovascular disorders. As more selective A2AR ligands are being identified, its roles in other disorders, such as Parkinson’s disease, are starting to emerge, and A2AR antagonists are important drug candidates for nondopaminergic anti-Parkinson treatment. Here we report the crystal structure of A2A receptor bound to compound 1 (Cmpd-1), a novel A2AR/N-methyl d-aspartate receptor subtype 2B (NR2B) dual antagonist and potential anti-Parkinson candidate compound, at 3.5 A resolution. The A2A receptor with a cytochrome b562-RIL (BRIL) fusion (A2AR–BRIL) in the intracellular loop 3 (ICL3) was crystallized in detergent micelles using vapor-phase diffusion. Whereas A2AR–BRIL bound to the antagonist ZM241385 has previously been crystallized in lipidic cubic phase (LCP), structural differences in the Cmpd-1–bound A2AR–BRIL prevented formation of the lattice observed with the ZM241385–bound receptor. The crystals grew with a type II crystal lattice in contrast to the typical type I packing seen from membrane protein structures crystallized in LCP. Cmpd-1 binds in a position that overlaps with the native ligand adenosine, but its methoxyphenyl group extends to an exosite not previously observed in other A2AR structures. Structural analysis revealed that Cmpd-1 binding results in the unique conformations of two tyrosine residues, Tyr91.35 and Tyr2717.36, which are critical for the formation of the exosite. The structure reveals insights into antagonist binding that are not observed in other A2AR structures, highlighting flexibility in the binding pocket that may facilitate the development of A2AR-selective compounds for the treatment of Parkinson’s disease.
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- 2017
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9. Structural insights into probe-dependent positive allosterism of the GLP-1 receptor
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Ana B, Bueno, Bingfa, Sun, Francis S, Willard, Dan, Feng, Joseph D, Ho, David B, Wainscott, Aaron D, Showalter, Michal, Vieth, Qi, Chen, Cynthia, Stutsman, Betty, Chau, James, Ficorilli, Francisco J, Agejas, Graham R, Cumming, Alma, Jiménez, Isabel, Rojo, Tong Sun, Kobilka, Brian K, Kobilka, and Kyle W, Sloop
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Models, Molecular ,Allosteric Regulation ,Molecular Structure ,Glucagon-Like Peptide 1 ,Protein Conformation ,Allosteric Site ,Glucagon-Like Peptide-1 Receptor - Abstract
Drugs that promote the association of protein complexes are an emerging therapeutic strategy. We report discovery of a G protein-coupled receptor (GPCR) ligand that stabilizes an active state conformation by cooperatively binding both the receptor and orthosteric ligand, thereby acting as a 'molecular glue'. LSN3160440 is a positive allosteric modulator of the GLP-1R optimized to increase the affinity and efficacy of GLP-1(9-36), a proteolytic product of GLP-1(7-36). The compound enhances insulin secretion in a glucose-, ligand- and GLP-1R-dependent manner. Cryo-electron microscopy determined the structure of the GLP-1R bound to LSN3160440 in complex with GLP-1 and heterotrimeric G
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- 2019
10. Structural insights into the activation of metabotropic glutamate receptors
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Antoine, Koehl, Hongli, Hu, Dan, Feng, Bingfa, Sun, Yan, Zhang, Michael J, Robertson, Matthew, Chu, Tong Sun, Kobilka, Toon, Laeremans, Jan, Steyaert, Jeffrey, Tarrasch, Somnath, Dutta, Rasmus, Fonseca, William I, Weis, Jesper M, Mathiesen, Georgios, Skiniotis, and Brian K, Kobilka
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Models, Molecular ,Allosteric Regulation ,Protein Domains ,Protein Stability ,Receptor, Metabotropic Glutamate 5 ,Cryoelectron Microscopy ,Humans ,Cysteine ,Crystallography, X-Ray ,Ligands ,Signal Transduction - Abstract
Metabotropic glutamate receptors are family C G-protein-coupled receptors. They form obligate dimers and possess extracellular ligand-binding Venus flytrap domains, which are linked by cysteine-rich domains to their 7-transmembrane domains. Spectroscopic studies show that signalling is a dynamic process, in which large-scale conformational changes underlie the transmission of signals from the extracellular Venus flytraps to the G protein-coupling domains-the 7-transmembrane domains-in the membrane. Here, using a combination of X-ray crystallography, cryo-electron microscopy and signalling studies, we present a structural framework for the activation mechanism of metabotropic glutamate receptor subtype 5. Our results show that agonist binding at the Venus flytraps leads to a compaction of the intersubunit dimer interface, thereby bringing the cysteine-rich domains into close proximity. Interactions between the cysteine-rich domains and the second extracellular loops of the receptor enable the rigid-body repositioning of the 7-transmembrane domains, which come into contact with each other to initiate signalling.
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- 2018
11. Crystal structure of the adenosine A
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Bingfa, Sun, Priti, Bachhawat, Matthew Ling-Hon, Chu, Martyn, Wood, Tom, Ceska, Zara A, Sands, Joel, Mercier, Florence, Lebon, Tong Sun, Kobilka, and Brian K, Kobilka
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Receptor, Adenosine A2A ,Triazines ,Parkinson Disease ,Spodoptera ,Triazoles ,Biological Sciences ,Crystallography, X-Ray ,Ligands ,Receptors, N-Methyl-D-Aspartate ,Adenosine A2 Receptor Antagonists ,Protein Structure, Tertiary ,Antiparkinson Agents ,Sf9 Cells ,Animals ,Humans ,Tyrosine ,Allosteric Site - Abstract
The A2AR is a G protein-coupled receptor (GPCR) that plays important roles in cardiovascular physiology and immune function. The A2AR is also a target for the treatment of Parkinson’s disease, where A2AR antagonists have been shown to enhance signaling through the D2 dopamine receptor. Here we present the crystal structure of the A2AR bound to a novel bitopic antagonist. As a result of structural changes needed to accommodate the bound antagonist, crystals could not be grown in lipidic cubic phase. Instead, crystals were grown in detergent with a type II packing rarely observed in GPCR crystals. The structure revealed a potential allosteric pocket that that can be exploited to develop subtype-selective allosteric modulators.
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- 2017
12. Author Correction: Structural insights into the activation of metabotropic glutamate receptors
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Dan Feng, Jesper Mosolff Mathiesen, Michael J. Robertson, Antoine Koehl, Tong Sun Kobilka, Brian K. Kobilka, Matthew Ling-Hon Chu, Jeffrey T. Tarrasch, Yan Zhang, Georgios Skiniotis, William I. Weis, Somnath Dutta, Hongli Hu, Toon Laeremans, Rasmus Fonseca, Jan Steyaert, and Bingfa Sun
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0301 basic medicine ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Multidisciplinary ,Metabotropic glutamate receptor ,business.industry ,030220 oncology & carcinogenesis ,Published Erratum ,Medicine ,business ,Neuroscience - Abstract
The surname of author Toon Laeremans was misspelled ‘Laermans’. This error has been corrected online.
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- 2019
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13. The Dynamic Process of β2-Adrenergic Receptor Activation
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Juan Jose Fung, Albert C. Pan, R. Scott Prosser, Yaozhong Zou, Corey W. Liu, Aashish Manglik, Tong Sun Kobilka, Michael P. Bokoch, Brian K. Kobilka, Rie Nygaard, David E. Shaw, Daniel H. Arlow, Foon Sun Thian, Ron O. Dror, Thomas J. Mildorf, and Luciano Mueller
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Agonist ,Protein Conformation ,medicine.drug_class ,Nuclear Magnetic Resonance ,1.1 Normal biological development and functioning ,Molecular Sequence Data ,beta-2 ,Molecular Dynamics Simulation ,Biology ,Medical and Health Sciences ,General Biochemistry, Genetics and Molecular Biology ,Protein structure ,Underpinning research ,Receptors ,medicine ,Humans ,Inverse agonist ,Amino Acid Sequence ,Receptor ,Adrenergic beta-2 Receptor Agonists ,Nuclear Magnetic Resonance, Biomolecular ,G protein-coupled receptor ,Biochemistry, Genetics and Molecular Biology(all) ,Neurosciences ,Biological Sciences ,Transmembrane protein ,Biochemistry ,Adrenergic ,Rhodopsin ,Biophysics ,biology.protein ,Thermodynamics ,Generic health relevance ,Receptors, Adrenergic, beta-2 ,Signal transduction ,Biomolecular ,Developmental Biology ,Signal Transduction - Abstract
G-protein-coupled receptors (GPCRs) can modulate diverse signaling pathways, often in a ligand-specific manner. The full range of functionally relevant GPCR conformations is poorly understood. Here, we use NMR spectroscopy to characterize the conformational dynamics of the transmembrane core of the β(2)-adrenergic receptor (β(2)AR), a prototypical GPCR. We labeled β(2)AR with (13)CH(3)ε-methionine and obtained HSQC spectra of unliganded receptor as well as receptor bound to an inverse agonist, an agonist, and a G-protein-mimetic nanobody. These studies provide evidence for conformational states not observed in crystal structures, as well as substantial conformational heterogeneity in agonist- and inverse-agonist-bound preparations. They also show that for β(2)AR, unlike rhodopsin, an agonist alone does not stabilize a fully active conformation, suggesting that the conformational link between the agonist-binding pocket and the G-protein-coupling surface is not rigid. The observed heterogeneity may be important for β(2)AR's ability to engage multiple signaling and regulatory proteins.
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- 2013
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14. Structure of the δ-opioid receptor bound to naltrindole
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Brian K. Kobilka, Sébastien Granier, Foon Sun Thian, Andrew C. Kruse, William I. Weis, Aashish Manglik, and Tong Sun Kobilka
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0303 health sciences ,Multidisciplinary ,Chemistry ,medicine.drug_class ,Neuropeptide FF receptor ,Pharmacology ,JDTic ,Article ,3. Good health ,OGFr ,03 medical and health sciences ,Nociceptin receptor ,chemistry.chemical_compound ,0302 clinical medicine ,Naltrindole ,Opioid receptor ,medicine ,Opioid peptide ,030217 neurology & neurosurgery ,030304 developmental biology ,G protein-coupled receptor ,medicine.drug - Abstract
The X-ray crystal structure of the mouse δ-opioid receptor in complex with the subtype-selective antagonist naltrindole is reported. Four papers in this issue of Nature present the long-awaited high-resolution crystal structures of the four known opioid receptors in ligand-bound conformations. These G-protein-coupled receptors are the targets of a broad range of drugs, including painkillers, antidepressants, anti-anxiety agents and anti-addiction medications. Brian Kobilka’s group reports the crystal structure of the µ-opioid receptor bound to a morphinan antagonist and the δ-opioid receptor bound to naltrindole. Raymond Stevens’ group reports on the κ-opioid receptor bound to the selective antagonist JDTic, and the nociceptin/orphanin FQ receptor bound to a peptide mimetic. In an associated News and Views, Marta Filizola and Lakshmi Devi discuss the implications of these landmark papers for research on the mechanisms underlying receptor function and drug development. The opioid receptor family comprises three members, the µ-, δ- and κ-opioid receptors, which respond to classical opioid alkaloids such as morphine and heroin as well as to endogenous peptide ligands like endorphins. They belong to the G-protein-coupled receptor (GPCR) superfamily, and are excellent therapeutic targets for pain control. The δ-opioid receptor (δ-OR) has a role in analgesia, as well as in other neurological functions that remain poorly understood1. The structures of the µ-OR and κ-OR have recently been solved2,3. Here we report the crystal structure of the mouse δ-OR, bound to the subtype-selective antagonist naltrindole. Together with the structures of the µ-OR and κ-OR, the δ-OR structure provides insights into conserved elements of opioid ligand recognition while also revealing structural features associated with ligand-subtype selectivity. The binding pocket of opioid receptors can be divided into two distinct regions. Whereas the lower part of this pocket is highly conserved among opioid receptors, the upper part contains divergent residues that confer subtype selectivity. This provides a structural explanation and validation for the ‘message–address’ model of opioid receptor pharmacology4,5, in which distinct ‘message’ (efficacy) and ‘address’ (selectivity) determinants are contained within a single ligand. Comparison of the address region of the δ-OR with other GPCRs reveals that this structural organization may be a more general phenomenon, extending to other GPCR families as well.
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- 2012
15. Crystal structure of the µ-opioid receptor bound to a morphinan antagonist
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Roger K. Sunahara, William I. Weis, Brian K. Kobilka, Foon Sun Thian, Jesper Mosolff Mathiesen, Andrew C. Kruse, Sébastien Granier, Aashish Manglik, Tong Sun Kobilka, and Leonardo Pardo
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0303 health sciences ,Morphinan ,Multidisciplinary ,Stereochemistry ,Chemistry ,medicine.drug_class ,Antagonist ,Opium ,Pharmacology ,JDTic ,Article ,3. Good health ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Opioid ,Opioid receptor ,Morphine ,medicine ,Receptor ,030217 neurology & neurosurgery ,030304 developmental biology ,medicine.drug - Abstract
Opium is one of the world's oldest drugs, and its derivatives morphine and codeine are among the most used clinical drugs to relieve severe pain. These prototypical opioids produce analgesia as well as many undesirable side effects (sedation, apnoea and dependence) by binding to and activating the G-protein-coupled µ-opioid receptor (µ-OR) in the central nervous system. Here we describe the 2.8 A crystal structure of the mouse µ-OR in complex with an irreversible morphinan antagonist. Compared to the buried binding pocket observed in most G-protein-coupled receptors published so far, the morphinan ligand binds deeply within a large solvent-exposed pocket. Of particular interest, the µ-OR crystallizes as a two-fold symmetrical dimer through a four-helix bundle motif formed by transmembrane segments 5 and 6. These high-resolution insights into opioid receptor structure will enable the application of structure-based approaches to develop better drugs for the management of pain and addiction.
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- 2012
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16. Crystal Structure of the β2Adrenergic Receptor-Gs protein complex
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Brian T. DeVree, Ka Young Chung, Yaozhong Zou, William I. Weis, Foon Sun Thian, Brian K. Kobilka, Jan Steyaert, Andrew C. Kruse, Els Pardon, Jesper Mosolff Mathiesen, Georgios Skiniotis, Joseph A. Lyons, Samuel H. Gellman, Martin Caffrey, Diane M. Calinski, Tong Sun Kobilka, Syed T. A. Shah, Pil Seok Chae, Søren G. F. Rasmussen, Roger K. Sunahara, Structural Biology Brussels, and Department of Bio-engineering Sciences
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Models, Molecular ,Gs alpha subunit ,Biology ,Crystallography, X-Ray ,Article ,5-HT7 receptor ,Beta-1 adrenergic receptor ,03 medical and health sciences ,0302 clinical medicine ,GPCR ,Heterotrimeric G protein ,Catalytic Domain ,GTP-Binding Protein alpha Subunits, Gs ,Animals ,structural biology ,Adrenergic beta-2 Receptor Agonists ,030304 developmental biology ,G alpha subunit ,G protein-coupled receptor ,0303 health sciences ,Multidisciplinary ,Cell biology ,Rats ,Enzyme Activation ,Multiprotein Complexes ,Beta-2 adrenergic receptor ,cAMP-dependent pathway ,Cattle ,Receptors, Adrenergic, beta-2 ,Crystallization ,030217 neurology & neurosurgery ,Protein Binding - Abstract
G protein-coupled receptors (GPCRs) are responsible for the majority of cellular responses to hormones and neurotransmitters as well as the senses of sight, olfaction and taste. The paradigm of GPCR signalling is the activation of a heterotrimeric GTP binding protein (G protein) by an agonist-occupied receptor. The β(2) adrenergic receptor (β(2)AR) activation of Gs, the stimulatory G protein for adenylyl cyclase, has long been a model system for GPCR signalling. Here we present the crystal structure of the active state ternary complex composed of agonist-occupied monomeric β(2)AR and nucleotide-free Gs heterotrimer. The principal interactions between the β(2)AR and Gs involve the amino- and carboxy-terminal α-helices of Gs, with conformational changes propagating to the nucleotide-binding pocket. The largest conformational changes in the β(2)AR include a 14 Å outward movement at the cytoplasmic end of transmembrane segment 6 (TM6) and an α-helical extension of the cytoplasmic end of TM5. The most surprising observation is a major displacement of the α-helical domain of Gαs relative to the Ras-like GTPase domain. This crystal structure represents the first high-resolution view of transmembrane signalling by a GPCR.
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- 2011
17. Ligand-specific regulation of the extracellular surface of a G-protein-coupled receptor
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Corey W. Liu, Luciano Mueller, Brian K. Kobilka, R. Scott Prosser, Foon Sun Thian, Michael P. Bokoch, Joseph D. Puglisi, Yaozhong Zou, Rie Nygaard, Hee Jung Choi, Daniel M. Rosenbaum, Tong Sun Kobilka, William I. Weis, Leonardo Pardo, Juan Jose Fung, and Søren G. F. Rasmussen
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Models, Molecular ,Drug Inverse Agonism ,Static Electricity ,Allosteric regulation ,Crystallography, X-Ray ,Ligands ,Methylation ,Article ,Substrate Specificity ,Propanolamines ,03 medical and health sciences ,0302 clinical medicine ,Allosteric Regulation ,Adrenergic beta-2 Receptor Antagonists ,Formoterol Fumarate ,Extracellular ,Humans ,Inverse agonist ,14. Life underwater ,Receptor ,Adrenergic beta-2 Receptor Agonists ,Nuclear Magnetic Resonance, Biomolecular ,030304 developmental biology ,G protein-coupled receptor ,0303 health sciences ,Binding Sites ,Multidisciplinary ,Chemistry ,Lysine ,Transmembrane protein ,Protein Structure, Tertiary ,Biochemistry ,Membrane protein ,Ethanolamines ,Biophysics ,Mutant Proteins ,Receptors, Adrenergic, beta-2 ,Salt bridge ,030217 neurology & neurosurgery - Abstract
G-protein-coupled receptors (GPCRs) mediate the majority of cellular responses to hormones and neurotransmitters, and these membrane proteins are the largest group of therapeutic targets for a broad range of diseases. It is very difficult to obtain high-resolution X-ray crystal structures of GPCRs; little is known about the functional role(s) of the extracellular surface in receptor activation or about the conformational coupling of the extracellular surface to the native ligand-binding pocket. In this study, Bokoch et al. used NMR spectroscopy to investigate ligand-specific conformational changes around a salt bridge linking extracellular loops 2 and 3 of the β2 adrenergic receptor. They found that drugs that bind within the transmembrane core (and exhibit different efficacies towards G-protein activation) stabilize distinct conformations of the extracellular surface. New therapeutic agents that target this diverse surface could function as allosteric modulators with high subtype selectivity. G-protein-coupled receptors (GPCRs) mediate the majority of cellular responses to hormones and neurotransmitters and are the largest group of therapeutic targets for a range of diseases. The extracellular surface (ECS) of GPCRs is diverse and therefore an ideal target for the discovery of subtype-selective drugs. Here, NMR spectroscopy is used to investigate ligand-specific conformational changes around a central structural feature in the ECS of a GPCR. G-protein-coupled receptors (GPCRs) are seven-transmembrane proteins that mediate most cellular responses to hormones and neurotransmitters. They are the largest group of therapeutic targets for a broad spectrum of diseases. Recent crystal structures of GPCRs1,2,3,4,5 have revealed structural conservation extending from the orthosteric ligand-binding site in the transmembrane core to the cytoplasmic G-protein-coupling domains. In contrast, the extracellular surface (ECS) of GPCRs is remarkably diverse and is therefore an ideal target for the discovery of subtype-selective drugs. However, little is known about the functional role of the ECS in receptor activation, or about conformational coupling of this surface to the native ligand-binding pocket. Here we use NMR spectroscopy to investigate ligand-specific conformational changes around a central structural feature in the ECS of the β2 adrenergic receptor: a salt bridge linking extracellular loops 2 and 3. Small-molecule drugs that bind within the transmembrane core and exhibit different efficacies towards G-protein activation (agonist, neutral antagonist and inverse agonist) also stabilize distinct conformations of the ECS. We thereby demonstrate conformational coupling between the ECS and the orthosteric binding site, showing that drugs targeting this diverse surface could function as allosteric modulators with high subtype selectivity. Moreover, these studies provide a new insight into the dynamic behaviour of GPCRs not addressable by static, inactive-state crystal structures.
- Published
- 2010
- Full Text
- View/download PDF
18. GPCR Engineering Yields High-Resolution Structural Insights into β 2 -Adrenergic Receptor Function
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Daniel M. Rosenbaum, Xiao-Jie Yao, Brian K. Kobilka, Vadim Cherezov, Raymond C. Stevens, William I. Weis, Tong Sun Kobilka, Hee Jung Choi, Søren G. F. Rasmussen, Foon Sun Thian, and Michael A. Hanson
- Subjects
Models, Molecular ,Drug Inverse Agonism ,Protein Conformation ,G protein ,Recombinant Fusion Proteins ,Adrenergic beta-Antagonists ,Molecular Sequence Data ,Crystallography, X-Ray ,Ligands ,Protein Structure, Secondary ,Cell Line ,Propanolamines ,Beta-1 adrenergic receptor ,Immunoglobulin Fab Fragments ,Protein structure ,Heterotrimeric G protein ,Enzyme-linked receptor ,Bacteriophage T4 ,Humans ,5-HT5A receptor ,Amino Acid Sequence ,G protein-coupled receptor ,G protein-coupled receptor kinase ,Binding Sites ,Multidisciplinary ,Chemistry ,Cell Membrane ,Adrenergic beta-Agonists ,Protein Structure, Tertiary ,Biochemistry ,Biophysics ,Muramidase ,Receptors, Adrenergic, beta-2 ,Crystallization - Abstract
The β 2 -adrenergic receptor (β 2 AR) is a well-studied prototype for heterotrimeric guanine nucleotide–binding protein (G protein)–coupled receptors (GPCRs) that respond to diffusible hormones and neurotransmitters. To overcome the structural flexibility of the β 2 AR and to facilitate its crystallization, we engineered a β 2 AR fusion protein in which T4 lysozyme (T4L) replaces most of the third intracellular loop of the GPCR (“β 2 AR-T4L”) and showed that this protein retains near-native pharmacologic properties. Analysis of adrenergic receptor ligand-binding mutants within the context of the reported high-resolution structure of β 2 AR-T4L provides insights into inverse-agonist binding and the structural changes required to accommodate catecholamine agonists. Amino acids known to regulate receptor function are linked through packing interactions and a network of hydrogen bonds, suggesting a conformational pathway from the ligand-binding pocket to regions that interact with G proteins.
- Published
- 2007
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19. High-Resolution Crystal Structure of an Engineered Human β 2 -Adrenergic G Protein–Coupled Receptor
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Foon Sun Thian, William I. Weis, Raymond C. Stevens, Søren G. F. Rasmussen, Daniel M. Rosenbaum, Brian K. Kobilka, Vadim Cherezov, Michael A. Hanson, Hee Jung Choi, Tong Sun Kobilka, and Peter Kuhn
- Subjects
Multidisciplinary ,Rhodopsin ,G protein ,Stereochemistry ,Carazolol ,Heterotrimeric G protein ,Biophysics ,biology.protein ,Biology ,Signal transduction ,Ligand (biochemistry) ,Fusion protein ,G protein-coupled receptor - Abstract
Heterotrimeric guanine nucleotide–binding protein (G protein)–coupled receptors constitute the largest family of eukaryotic signal transduction proteins that communicate across the membrane. We report the crystal structure of a human β 2 -adrenergic receptor–T4 lysozyme fusion protein bound to the partial inverse agonist carazolol at 2.4 angstrom resolution. The structure provides a high-resolution view of a human G protein–coupled receptor bound to a diffusible ligand. Ligand-binding site accessibility is enabled by the second extracellular loop, which is held out of the binding cavity by a pair of closely spaced disulfide bridges and a short helical segment within the loop. Cholesterol, a necessary component for crystallization, mediates an intriguing parallel association of receptor molecules in the crystal lattice. Although the location of carazolol in the β 2 -adrenergic receptor is very similar to that of retinal in rhodopsin, structural differences in the ligand-binding site and other regions highlight the challenges in using rhodopsin as a template model for this large receptor family.
- Published
- 2007
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20. Crystal structure of the human β2 adrenergic G-protein-coupled receptor
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Brian K. Kobilka, Daniel M. Rosenbaum, Tong Sun Kobilka, Søren G. F. Rasmussen, Gebhard F. X. Schertler, Robert F. Fischetti, William I. Weis, Manfred Burghammer, Foon Sun Thian, Venkata R. P. Ratnala, Hee Jung Choi, Ruslan Sanishvili, and Patricia C. Edwards
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Models, Molecular ,Rhodopsin ,Drug Inverse Agonism ,Protein Conformation ,Spodoptera ,Crystallography, X-Ray ,Cell Line ,Immunoglobulin Fab Fragments ,Adrenergic beta-2 Receptor Antagonists ,Leucine ,Extracellular ,Animals ,Humans ,Inverse agonist ,Receptor ,G protein-coupled receptor ,Multidisciplinary ,biology ,Chemistry ,Lipids ,Transmembrane protein ,Cytoplasm ,biology.protein ,Biophysics ,Receptors, Adrenergic, beta-2 ,Crystallization ,Intracellular - Abstract
Structural analysis of G-protein-coupled receptors (GPCRs) for hormones and neurotransmitters has been hindered by their low natural abundance, inherent structural flexibility, and instability in detergent solutions. Here we report a structure of the human beta2 adrenoceptor (beta2AR), which was crystallized in a lipid environment when bound to an inverse agonist and in complex with a Fab that binds to the third intracellular loop. Diffraction data were obtained by high-brilliance microcrystallography and the structure determined at 3.4 A/3.7 A resolution. The cytoplasmic ends of the beta2AR transmembrane segments and the connecting loops are well resolved, whereas the extracellular regions of the beta2AR are not seen. The beta2AR structure differs from rhodopsin in having weaker interactions between the cytoplasmic ends of transmembrane (TM)3 and TM6, involving the conserved E/DRY sequences. These differences may be responsible for the relatively high basal activity and structural instability of the beta2AR, and contribute to the challenges in obtaining diffraction-quality crystals of non-rhodopsin GPCRs.
- Published
- 2007
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21. Crystal structures of the M1 and M4 muscarinic acetylcholine receptors
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Priti Bachhawat, David M. Thal, Patrick M. Sexton, Mark G. Bures, David A. Evans, Christian C. Felder, Tong Sun Kobilka, William I. Weis, Katie Leach, Brian K. Kobilka, Vindhya Nawaratne, Bingfa Sun, Dan Feng, and Arthur Christopoulos
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0301 basic medicine ,Models, Molecular ,Drug Inverse Agonism ,Surface Properties ,Static Electricity ,Thiophenes ,Pharmacology ,Crystallography, X-Ray ,Rhodopsin-like receptors ,Article ,Substrate Specificity ,03 medical and health sciences ,Allosteric Regulation ,Alzheimer Disease ,Muscarinic acetylcholine receptor ,Muscarinic acetylcholine receptor M5 ,medicine ,Humans ,Tiotropium Bromide ,Receptor ,G protein-coupled receptor ,Acetylcholine receptor ,Multidisciplinary ,Receptor, Muscarinic M4 ,Chemistry ,Receptor, Muscarinic M1 ,Nicotinic Acids ,Muscarinic acetylcholine receptor M3 ,Acetylcholine ,030104 developmental biology ,Schizophrenia ,Crystallization ,Neuroscience ,Allosteric Site ,medicine.drug - Abstract
Muscarinic M1–M5 acetylcholine receptors are G-protein-coupled receptors that regulate many vital functions of the central and peripheral nervous systems. In particular, the M1 and M4 receptor subtypes have emerged as attractive drug targets for treatments of neurological disorders, such as Alzheimer’s disease and schizophrenia, but the high conservation of the acetylcholine-binding pocket has spurred current research into targeting allosteric sites on these receptors. Here we report the crystal structures of the M1 and M4 muscarinic receptors bound to the inverse agonist, tiotropium. Comparison of these structures with each other, as well as with the previously reported M2 and M3 receptor structures, reveals differences in the orthosteric and allosteric binding sites that contribute to a role in drug selectivity at this important receptor family. We also report identification of a cluster of residues that form a network linking the orthosteric and allosteric sites of the M4 receptor, which provides new insight into how allosteric modulation may be transmitted between the two spatially distinct domains. X-ray crystal structures of the M1 and M4 muscarinic acetylcholine receptors, revealing differences in the orthosteric and allosteric binding sites that help to explain the subtype selectivity of drugs targeting this family of receptors. Arthur Christopoulos and colleagues present the first X-ray crystal structures of the M1 and M4 muscarinic acetylcholine receptors, G-protein-coupled receptors (GPCRs) that regulate many vital functions of the central and peripheral nervous systems. The structures reveal differences in the orthosteric and allosteric binding sites that help to explain the subtype selectivity of drugs targeting this family of receptors. The M1 and M4 receptor subtypes are potential drug targets for treatments of neurological disorders, such as Alzheimer's disease and schizophrenia.
- Published
- 2015
22. Enhancement of membrane insertion and function in a type IIIb membrane protein following introduction of a cleavable signal peptide
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Brian K. Kobilka, Xiao-Ming Guan, and Tong Sun Kobilka
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Signal peptide ,Vesicle-associated membrane protein 8 ,Endoplasmic reticulum ,STIM1 ,Cell Biology ,Biology ,Membrane transport ,Biochemistry ,Transmembrane protein ,Cell biology ,Membrane protein ,Molecular Biology ,Peptide sequence - Abstract
The human beta 2 adrenergic receptor is a type IIIb membrane protein. It has a putative seven-transmembrane topology but lacks an amino-terminal cleavable signal sequence. The mechanism by which the amino terminus of the beta 2 receptor is translocated across the endoplasmic reticulum membrane is unknown. Furthermore, it is not known if translocation as a type IIIb protein is essential for the proper folding. Our studies indicate that conversion of beta 2 receptor from a type IIIb to a type IIIa membrane protein by introducing an NH2-terminal cleavable signal sequence enhances translocation of the receptor into the endoplasmic reticulum membrane, thereby facilitating expression of functional receptor.
- Published
- 1992
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23. Crystal Structures of the β2-Adrenergic Receptor
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Patricia C. Edwards, Venkata R. P. Ratnala, Manfred Burghammer, Michael A. Hanson, Foon Sun Thian, Raymond C. Stevens, Brian K. Kobilka, William I. Weis, Vadim Cherezov, Asna Masood, Peter Day, Peter Kuhn, Ruslan Sanishvili, Hee Jung Choi, Juan Jose Fung, Xiao Jie Yao, Søren G. F. Rasmussen, Gebhard F. X. Schertler, Robert F. Fischetti, Daniel K. Rohrer, Tong Sun Kobilka, Daniel M. Rosenbaum, and Charles Parnot
- Subjects
Cell membrane ,medicine.anatomical_structure ,Membrane protein ,G protein ,Carazolol ,medicine ,Biophysics ,Inverse agonist ,Signal transduction ,Receptor ,G protein-coupled receptor - Abstract
G protein coupled receptors (GPCRs) constitute the largest family of membrane proteins in the human genome, and are responsible for the majority of signal transduction events involving hormones and neuro-transmitters across the cell membrane. GPCRs that bind to diffusible ligands have low natural abundance, are relatively unstable in detergents, and display basal G protein activation even in the absence of ligands. To overcome these problems two approaches were taken to obtain crystal structures of the β2-adrenergic receptor (β2AR), a well-characterized GPCR that binds cate-cholamine hormones. The receptor was bound to the partial inverse agonist carazolol and co-crystallized with a Fab made to a three-dimensional epitope formed by the third intracellular loop (ICL3), or by replacement of ICL3 with T4 lysozyme. Small crystals were obtained in lipid bicelles (β2AR-Fab) or lipidic cubic phase (β2AR-T4 lysozyme), and diffraction data were obtained using microfocus technology. The structures provide insights into the basal activity of the receptor, the structural features that enable binding of diffusible ligands, and the coupling between ligand binding and G-protein activation.
- Published
- 2009
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24. A monoclonal antibody for G protein-coupled receptor crystallography
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Asna Masood, Daniel K. Rohrer, Peter Day, Søren G. F. Rasmussen, William I. Weis, Tong Sun Kobilka, Brian K. Kobilka, Xiao-Jie Yao, Juan Jose Fung, Charles Parnot, and Hee Jung Choi
- Subjects
medicine.drug_class ,Blotting, Western ,Molecular Sequence Data ,Monoclonal antibody ,Biochemistry ,Epitope ,Receptors, G-Protein-Coupled ,Antigen-Antibody Reactions ,Epitopes ,Immunoglobulin Fab Fragments ,Mice ,Protein structure ,medicine ,Animals ,Humans ,Amino Acid Sequence ,Receptor ,Molecular Biology ,Peptide sequence ,G protein-coupled receptor ,Fluorescent Dyes ,Crystallography ,biology ,Rhodamines ,Vaccination ,Antibodies, Monoclonal ,Cell Biology ,Recombinant Proteins ,Protein Structure, Tertiary ,biology.protein ,Receptors, Adrenergic, beta-2 ,Antibody ,Signal transduction ,Crystallization ,Biotechnology - Abstract
G protein-coupled receptors (GPCRs) constitute the largest family of signaling proteins in mammals, mediating responses to hormones, neurotransmitters, and senses of sight, smell and taste. Mechanistic insight into GPCR signal transduction is limited by a paucity of high-resolution structural information. We describe the generation of a monoclonal antibody that recognizes the third intracellular loop (IL3) of the native human beta(2) adrenergic (beta(2)AR) receptor; this antibody was critical for acquiring diffraction-quality crystals.
- Published
- 2007
25. Crystal structure of the adenosine A2A receptor bound to an antagonist reveals a potential allosteric pocket.
- Author
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Bingfa Sun, Bachhawat, Priti, Matthew Ling-Hon Chu, Tong Sun Kobilka, Kobilka, Brian K., Wood, Martyn, Ceska, Tom, Sands, Zara A., Mercier, Joel, and Lebon, Florence
- Subjects
ADENOSINES ,ALLOSTERIC regulation ,DRUG therapy for Parkinson's disease ,PARKINSON'S disease treatment ,PARKINSON'S disease diagnosis ,G protein coupled receptors - Abstract
The adenosine A
2A receptor (A2A R) has long been implicated in cardiovascular disorders. As more selective A2A R ligands are being identified, its roles in other disorders, such as Parkinson's disease, are starting to emerge, and A2A R antagonists are important drug candidates for nondopaminergic anti-Parkinson treatment. Here we report the crystal structure of A2A receptor bound to compound 1 (Cmpd-1), a novel A2A R/N-methyl D-aspartate receptor subtype 2B (NR2B) dual antagonist and potential anti-Parkinson candidate compound, at 3.5 Å resolution. The A2A receptor with a cytochrome b562-RIL (BRIL) fusion (A2A R-BRIL) in the intracellular loop 3 (ICL3) was crystallized in detergent micelles using vapor-phase diffusion. Whereas A2A R-BRIL bound to the antagonist ZM241385 has previously been crystallized in lipidic cubic phase (LCP), structural differences in the Cmpd-1-bound A2A R-BRIL prevented formation of the lattice observed with the ZM241385-bound receptor. The crystals grew with a type II crystal lattice in contrast to the typical type I packing seen from membrane protein structures crystallized in LCP. Cmpd-1 binds in a position that overlaps with the native ligand adenosine, but its methoxyphenyl group extends to an exosite not previously observed in other A2A R structures. Structural analysis revealed that Cmpd-1 binding results in the unique conformations of two tyrosine residues, Tyr91.35 and Tyr2717.36, which are critical for the formation of the exosite. The structure reveals insights into antagonist binding that are not observed in other A2A R structures, highlighting flexibility in the binding pocket that may facilitate the development of A2A R-selective compounds for the treatment of Parkinson's disease. [ABSTRACT FROM AUTHOR]- Published
- 2017
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26. Probing the beta2 adrenoceptor binding site with catechol reveals differences in binding and activation by agonists and partial agonists
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Gayathri Swaminath, Tong Sun Kobilka, Tae Weon Lee, Wen Zhu, Brian K. Kobilka, Xavier Deupi, and Foon Sun Thian
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Agonist ,Models, Molecular ,Insecta ,Time Factors ,Stereochemistry ,medicine.drug_class ,Biochemical Phenomena ,Protein Conformation ,Catechols ,Plasma protein binding ,Ligands ,Partial agonist ,Biochemistry ,Models, Biological ,Receptors, G-Protein-Coupled ,Serine ,Catecholamines ,medicine ,Animals ,Humans ,Albuterol ,Binding site ,Receptor ,Molecular Biology ,G protein-coupled receptor ,Binding Sites ,Chemistry ,Isoproterenol ,Cell Biology ,Lipids ,Transmembrane domain ,Kinetics ,Spectrometry, Fluorescence ,Models, Chemical ,Receptors, Adrenergic, beta-2 ,Protein Binding - Abstract
The beta(2) adrenergic receptor (beta(2)AR) is a prototypical family A G protein-coupled receptor (GPCR) and an excellent model system for studying the mechanism of GPCR activation. The beta(2)AR agonist binding site is well characterized, and there is a wealth of structurally related ligands with functionally diverse properties. In the present study, we use catechol (1,2-benzenediol, a structural component of catecholamine agonists) as a molecular probe to identify mechanistic differences between beta(2)AR activation by catecholamine agonists, such as isoproterenol, and by the structurally related non-catechol partial agonist salbutamol. Using biophysical and pharmacologic approaches, we show that the aromatic ring of salbutamol binds to a different site on the beta(2)AR than the aromatic ring of catecholamines. This difference is important in receptor activation as it has been hypothesized that the aromatic ring of catecholamines plays a role in triggering receptor activation through interactions with a conserved cluster of aromatic residues in the sixth transmembrane segment by a rotamer toggle switch mechanism. Our experiments indicate that the aromatic ring of salbutamol does not activate this mechanism either directly or indirectly. Moreover, the non-catechol ring of partial agonists does not interact optimally with serine residues in the fifth transmembrane helix that have been shown to play an important role in activation by catecholamines. These results demonstrate unexpected differences in binding and activation by structurally similar agonists and partial agonists. Moreover, they provide evidence that activation of a GPCR is a multistep process that can be dissected into its component parts using agonist fragments.
- Published
- 2005
27. Ligand-specific regulation of the extracellular surface of a G-protein-coupled receptor.
- Author
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Bokoch, Michael P., Yaozhong Zou, Rasmussen, Søren G. F., Liu, Corey W., Nygaard, Rie, Rosenbaum, Daniel M., Fung, Juan José, Hee-Jung Choi, Foon Sun Thian, Tong Sun Kobilka, Puglisi, Joseph D., Weis, William I., Pardo, Leonardo, Prosser, R. Scott, Mueller, Luciano, and Kobilka, Brian K.
- Subjects
NEURAL transmission ,TARGETED drug delivery ,SPECTRUM analysis ,NUCLEAR magnetic resonance spectroscopy ,LIGANDS (Biochemistry) ,ENDOCRINE glands ,ADRENERGIC receptors ,HORMONES ,NEUROTRANSMITTERS - Abstract
G-protein-coupled receptors (GPCRs) are seven-transmembrane proteins that mediate most cellular responses to hormones and neurotransmitters. They are the largest group of therapeutic targets for a broad spectrum of diseases. Recent crystal structures of GPCRs have revealed structural conservation extending from the orthosteric ligand-binding site in the transmembrane core to the cytoplasmic G-protein-coupling domains. In contrast, the extracellular surface (ECS) of GPCRs is remarkably diverse and is therefore an ideal target for the discovery of subtype-selective drugs. However, little is known about the functional role of the ECS in receptor activation, or about conformational coupling of this surface to the native ligand-binding pocket. Here we use NMR spectroscopy to investigate ligand-specific conformational changes around a central structural feature in the ECS of the β
2 adrenergic receptor: a salt bridge linking extracellular loops 2 and 3. Small-molecule drugs that bind within the transmembrane core and exhibit different efficacies towards G-protein activation (agonist, neutral antagonist and inverse agonist) also stabilize distinct conformations of the ECS. We thereby demonstrate conformational coupling between the ECS and the orthosteric binding site, showing that drugs targeting this diverse surface could function as allosteric modulators with high subtype selectivity. Moreover, these studies provide a new insight into the dynamic behaviour of GPCRs not addressable by static, inactive-state crystal structures. [ABSTRACT FROM AUTHOR]- Published
- 2010
- Full Text
- View/download PDF
28. Functional activity and regulation of human beta 2-adrenergic receptors expressed in Xenopus oocytes
- Author
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Marc G. Caron, Kiefer W. Daniel, Brian K. Kobilka, C MacGregor, Robert J. Lefkowitz, and Tong Sun Kobilka
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Xenopus ,RNA ,Cell Biology ,Biology ,biology.organism_classification ,Biochemistry ,Cyclase ,Molecular biology ,Open reading frame ,Homologous desensitization ,Complementary DNA ,Receptor ,Protein kinase A ,Molecular Biology - Abstract
The recently cloned human beta-adrenergic cDNA and several mutated forms have been expressed in Xenopus laevis oocytes by injection of RNA made from the cDNA under the control of the bacteriophage SP6 promoter. The cDNA and gene of the beta 2-adrenergic receptor possess the unusual feature of having a second upstream ATG (-101 base pairs) and a 19-codon open reading frame 5' to the initiator methionine codon of the receptor (Kobilka, B. K., Dixon, R. A. F., Frielle, T., Dohlman, H. G., Bolanowski, M., Sigal, I. S., Yang-Feng, T. L., Francke, U., Caron, M. G., and Lefkowitz, R. J. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 46-50). RNA lacking this upstream AUG and open reading frame was translated approximately 10-fold more efficiently both in an in vitro rabbit reticulocyte system and in oocytes. Injected oocytes but not water injected controls expressed typical beta 2-adrenergic receptors as assessed by ligand binding (450 fmol/mg membrane protein) and catecholamine-stimulated adenylate cyclase (approximately 20 fold). Moreover, these receptors displayed typical agonist-induced homologous desensitization when oocytes were incubated with isoproterenol at room temperature for 3-24 h. Among a series of mutations, truncations of the membrane-anchored core of the receptor eliminated receptor binding and cyclase stimulating activity. In contrast, disruption of one of the cAMP-dependent protein kinase phosphorylation sites or removal of the serine/threonine-rich carboxyl terminus had little or no effect on these functions or on the extent of agonist-induced desensitization relative to that observed with native receptor. These studies validate the beta 2-adrenergic nature of the cloned human beta-adrenergic cDNA, document the utility of the Xenopus oocyte system for studying functional and regulatory properties of receptors coupled to adenylate cyclase, and suggest the possibility that elements in the 5' untranslated region of the beta 2-adrenergic receptor RNA may regulate its translation in vivo.
- Published
- 1987
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29. Cloning, Sequencing, and Expression of the Gene Coding for the Human Platelet α 2 -Adrenergic Receptor
- Author
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Hiroaki Matsui, Marc G. Caron, Tong Sun Kobilka, Robert J. Lefkowitz, John W. Regan, Teresa L. Yang-Feng, Brian K. Kobilka, and Uta Francke
- Subjects
Blood Platelets ,Molecular Sequence Data ,Biology ,GTP-Binding Proteins ,Humans ,5-HT5A receptor ,Amino Acid Sequence ,Cloning, Molecular ,Receptor ,Gene ,Peptide sequence ,Southern blot ,Regulation of gene expression ,Multidisciplinary ,Base Sequence ,Infant, Newborn ,Nucleic acid sequence ,Membrane Proteins ,Receptors, Adrenergic, alpha ,Phosphoproteins ,Molecular biology ,Alpha-2B adrenergic receptor ,Gene Expression Regulation ,Genes ,Oligodeoxyribonucleotides ,Biochemistry ,Multigene Family - Abstract
The gene for the human platelet alpha 2-adrenergic receptor has been cloned with oligonucleotides corresponding to the partial amino acid sequence of the purified receptor. The identity of this gene has been confirmed by the binding of alpha 2-adrenergic ligands to the cloned receptor expressed in Xenopus laevis oocytes. The deduced amino acid sequence is most similar to the recently cloned human beta 2- and beta 1-adrenergic receptors; however, similarities to the muscarinic cholinergic receptors are also evident. Two related genes have been identified by low stringency Southern blot analysis. These genes may represent additional alpha 2-adrenergic receptor subtypes.
- Published
- 1987
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- View/download PDF
30. An intronless gene encoding a potential member of the family of receptors coupled to guanine nucleotide regulatory proteins
- Author
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Theresa Yang-Feng, Robert J. Lefkowitz, Marc G. Caron, Tong Sun Kobilka, Sheila Collins, Thomas Frielle, Uta Francke, and Brian K. Kobilka
- Subjects
Genetics ,Multidisciplinary ,Base Sequence ,biology ,Placenta ,Receptors, Drug ,Intron ,Receptors, Cell Surface ,DNA Restriction Enzymes ,Introns ,Open reading frame ,Exon ,Fetus ,Genes ,GTP-Binding Proteins ,Rhodopsin ,Cell surface receptor ,biology.protein ,Animals ,Humans ,Human genome ,Amino Acid Sequence ,Receptor ,Gene - Abstract
Plasma membrane receptors for hormones, drugs, neurotransmitters and sensory stimuli are coupled to guanine nucleotide regulatory proteins. Recent cloning of the genes and/or cDNAs for several of these receptors including the visual pigment rhodopsin, the adenylate-cyclase stimulatory beta-adrenergic receptor and two subtypes of muscarinic cholinergic receptors has suggested that these are homologous proteins with several conserved structural and functional features. Whereas the rhodopsin gene consists of five exons interrupted by four introns, surprisingly the human and hamster beta-adrenergic receptor genes contain no introns in either their coding or untranslated sequences. We have cloned and sequenced a DNA fragment in the human genome which cross-hybridizes with a full-length beta 2-adrenergic receptor probe at reduced stringency. Like the beta 2-adrenergic receptor this gene appears to be intronless, containing an uninterrupted long open reading frame which encodes a putative protein with all the expected structural features of a G-protein-coupled receptor.
- Published
- 1987
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- View/download PDF
31. Chimeric alpha 2-,beta 2-adrenergic receptors: delineation of domains involved in effector coupling and ligand binding specificity
- Author
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Robert J. Lefkowitz, Marc G. Caron, Kiefer W. Daniel, Brian K. Kobilka, John W. Regan, and Tong Sun Kobilka
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Multidisciplinary ,biology ,Adrenergic receptor ,Chemistry ,Chimera ,Protein Conformation ,Molecular Sequence Data ,Yohimbine ,Receptors, Adrenergic, alpha ,Chimeric antigen receptor ,Protein structure ,Biochemistry ,Rhodopsin ,Cell surface receptor ,GTP-Binding Proteins ,Pindolol ,Receptors, Adrenergic, beta ,biology.protein ,Animals ,Humans ,Amino Acid Sequence ,Cloning, Molecular ,Receptor ,Peptide sequence ,G alpha subunit - Abstract
The alpha 2 and beta 2 adrenergic receptors, both of which are activated by epinephrine, but which can be differentiated by selective drugs, have opposite effects (inhibitory and stimulatory) on the adenylyl cyclase system. The two receptors are homologous with each other, rhodopsin, and other receptors coupled to guanine nucleotide regulatory proteins and they contain seven hydrophobic domains, which may represent transmembrane spanning segments. The function of specific structural domains of these receptors was determined after construction and expression of a series of chimeric alpha 2-,beta 2-adrenergic receptor genes. The specificity for coupling to the stimulatory guanine nucleotide regulatory protein lies within a region extending from the amino terminus of the fifth hydrophobic domain to the carboxyl terminus of the sixth. Major determinants of alpha 2- and beta 2-adrenergic receptor agonist and antagonist ligand binding specificity are contained within the seventh membrane spanning domain. Chimeric receptors should prove useful for elucidating the structural basis of receptor function.
- Published
- 1988
32. Response : Analysis of Ligand Binding Specificity of Receptor Chimeras
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Brian K. Kobilka, Tong Sun Kobilka, Kiefer W. Daniels, John W. Regan, Marc G. Caran, and Robert J. Lefkowitz
- Subjects
Multidisciplinary - Published
- 1989
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- View/download PDF
33. Structural Insights into the Dynamic Process of β2-Adrenergic Receptor Signaling
- Author
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Aashish Manglik, Tong Sun Kobilka, Daniel Hilger, Wayne L. Hubbell, Brian K. Kobilka, Tae Hun Kim, Foon Sun Thian, Zhongyu Yang, R. Scott Prosser, Christian Altenbach, Matthieu Masureel, and Michael T. Lerch
- Subjects
Models, Molecular ,Magnetic Resonance Spectroscopy ,Cell ,Medical and Health Sciences ,01 natural sciences ,0302 clinical medicine ,Models ,Receptors ,Receptor ,0303 health sciences ,Biological Sciences ,Adrenergic beta-Agonists ,Cell biology ,medicine.anatomical_structure ,Biochemistry ,Adrenergic ,Signal transduction ,Intracellular ,Signal Transduction ,G protein ,Nuclear Magnetic Resonance ,1.1 Normal biological development and functioning ,Allosteric regulation ,Molecular Sequence Data ,beta-2 ,Biology ,010402 general chemistry ,General Biochemistry, Genetics and Molecular Biology ,Article ,β2 adrenergic receptor ,03 medical and health sciences ,Underpinning research ,medicine ,Extracellular ,Humans ,Amino Acid Sequence ,Process (anatomy) ,Nuclear Magnetic Resonance, Biomolecular ,030304 developmental biology ,G protein-coupled receptor ,Biochemistry, Genetics and Molecular Biology(all) ,Neurosciences ,Isoproterenol ,Molecular ,0104 chemical sciences ,Benzoxazines ,Cytoplasm ,Biophysics ,Generic health relevance ,Receptors, Adrenergic, beta-2 ,030217 neurology & neurosurgery ,Biomolecular ,Developmental Biology - Abstract
G-protein-coupled receptors (GPCRs) transduce signals from the extracellular environment to intracellular proteins. To gain structural insight into the regulation of receptor cytoplasmic conformations by extracellular ligands during signaling, we examine the structural dynamics of the cytoplasmic domain of the β2-adrenergic receptor (β2AR) using (19)F-fluorine NMR and double electron-electron resonance spectroscopy. These studies show that unliganded and inverse-agonist-bound β2AR exists predominantly in two inactive conformations that exchange within hundreds of microseconds. Although agonists shiftthe equilibrium toward a conformation capable of engaging cytoplasmic G proteins, they do so incompletely, resulting in increased conformational heterogeneity and the coexistence of inactive, intermediate, and active states. Complete transition to the active conformation requires subsequent interaction with a G protein or an intracellular G protein mimetic. These studies demonstrate a loose allosteric coupling of the agonist-binding site and G-protein-coupling interface that may generally be responsible for the complex signaling behavior observed for many GPCRs.
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34. GPCR Engineering Yields High-Resolution Structural Insights into β2-Adrenergic Receptor Function.
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Rosenbaum, Daniel M., Cherezov, Vadim, Hanson, Michael A., Rasmussen, Søren G. F., Foon Sun Thian, Tong Sun Kobilka, Hee-Jung Choi, Xiao-Jie Yao, Weis, William I., Stevens, Raymond C., and Kobilka, Brian K.
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ADRENERGIC receptors , *G proteins , *NEUROTRANSMITTERS , *HORMONES , *CRYSTALLIZATION , *LYSOZYMES - Abstract
The β2-adrenergic receptor (β2AR) is a well-studied prototype for heterotrimeric guanine nucleotide—binding protein (G protein)—coupled receptors (GPCRs) that respond to diffusible hormones and neurotransmitters. To overcome the structural flexibility of the β2AR and to facilitate its crystallization, we engineered a β2AR fusion protein in which T4 lysozyme (T4L) replaces most of the third intracellular loop of the GPCR (β2AR-T4L") and showed that this protein retains near-native pharmacologic properties. Analysis of adrenergic receptor ligand-binding mutants within the context of the reported high-resolution structure of β2AR-T4L provides insights into inverse-agonist binding and the structural changes required to accommodate catecholamine agonists. Amino acids known to regulate receptor function are linked through packing interactions and a network of hydrogen bonds, suggesting a conformational pathway from the ligand-binding pocket to regions that interact with G proteins. [ABSTRACT FROM AUTHOR]
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- 2007
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35. Probing the β2 Adrenoceptor Binding Site with Catechol Reveals Differences in Binding and Activation by Agonists and Partial Agonists.
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Swaminath, Gayathri, Deupi, Xavier, Tae Weon Lee, Wen Zhu, Foon Sun Thian, Tong Sun Kobilka, and Kobilka, Brian
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G proteins , *MEMBRANE proteins , *CELL receptors , *ADRENERGIC receptors , *BIOCHEMISTRY , *CATECHOL , *BIOMOLECULES - Abstract
The β2 adrenergic receptor (β2AR) is a prototypical family A G protein-coupled receptor (GPCR) and an excellent model system for studying the mechanism of GPCR activation. The β2AR agonist binding site is well characterized, and there is a wealth of structurally related ligands with functionally diverse properties. In the present study, we use catechol (1,2-benzenediol, a structural component of catecholamine agonists) as a molecular probe to identify mechanistic differences between β2AR activation by catecholamine agonists, such as isoproterenol, and by the structurally related non-catechol partial agonist salbutamol. Using biophysical and pharmacologic approaches, we show that the aromatic ring of salbutamol binds to a different site on the β2AR than the aromatic ring of catecholamines. This difference is important in receptor activation as it has been hypothesized that the aromatic ring of catecholamines plays a role in triggering receptor activation through inter. actions with a conserved cluster of aromatic residues in the sixth transmembrane segment by a rotamer toggle switch mechanism. Our experiments indicate that the aromatic ring of salbutamol does not activate this mechanism either directly or indirectly. Moreover, the non-catechol ring of partial agonists does not interact optimally with serine residues in the fifth transmembrane helix that have been shown to play an important role in activation by catecholamines. These results demonstrate unexpected differences in binding and activation by structurally similar agonists and partial agonists. Moreover, they provide evidence that activation of a GPCR is a multistep process that can be dissected into its component parts using agonist fragments. [ABSTRACT FROM AUTHOR]
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- 2005
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