28 results on '"Tomasz Kuder"'
Search Results
2. Monitoring In Situ Biodegradation of MTBE Using Multiple Rounds of Compound-Specific Stable Carbon Isotope Analysis
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Tomasz Kuder, Jun Lu, Paul Philp, and Frank Muramoto
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geography ,geography.geographical_feature_category ,Compound specific ,010401 analytical chemistry ,Environmental engineering ,Aquifer ,010501 environmental sciences ,Biodegradation ,01 natural sciences ,0104 chemical sciences ,Plume ,In situ biodegradation ,Isotopes of carbon ,Environmental science ,Groundwater ,0105 earth and related environmental sciences ,Water Science and Technology ,Civil and Structural Engineering ,Isotope analysis - Abstract
At a large industrial facility, methyl tert-butyl ether (MTBE) was released to the subsurface and dispersed into the light, non-aqueous phase liquids (LNAPL), in the first aquifer, with the LNAPL serving as a continuous source of MTBE in groundwater. Compound-specific isotope analysis was conducted on both MTBE and tert-butyl alcohol (TBA) in groundwater samples collected in 2008, 2011, and 2013 from wells located along and off the center line of the MTBE plume. The study demonstrated the onset and progress of biodegradation of MTBE between 2008 and 2013. The TBA observed in 2008 appears to be derived only in part from MTBE transformation while a significant portion of TBA might be contributed directly from LNAPL sources. In 2011 to 2013, the dominant source of TBA in the mid-gradient plume was MTBE transformation. A contribution of an offsite LNAPL source, in particular to the down-gradient area of the plume, is possible but could not be unequivocally confirmed. The time series provided direct evidence for MTBE biodegradation, but also a valuable insight on the sources of TBA.
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- 2016
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3. Do CSIA data from aquifers inform on natural degradation of chlorinated ethenes in aquitards?
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Héloïse A.A. Thouement, Timo J. Heimovaara, Tomasz Kuder, and Boris M. van Breukelen
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Groundwater flow ,Environmental remediation ,0207 environmental engineering ,Aquifer ,Soil science ,02 engineering and technology ,010501 environmental sciences ,01 natural sciences ,Chlorinated ethenes ,Reductive dechlorination ,Back-diffusion ,Environmental Chemistry ,020701 environmental engineering ,Groundwater ,0105 earth and related environmental sciences ,Water Science and Technology ,geography ,geography.geographical_feature_category ,Sediment ,Sorption ,Ethylenes ,Monitored natural attenuation ,Trichloroethylene ,Plume ,Biodegradation, Environmental ,Compound specific isotope analysis ,Environmental science ,Water Pollutants, Chemical - Abstract
Back-diffusion of chlorinated ethenes (CEs) from low-permeability layers (LPLs) causes contaminant persistence long after the primary spill zones have disappeared. Naturally occurring degradation in LPLs lowers remediation time frames, but its assessment through sediment sampling is prohibitive in conventional remediation projects. Scenario simulations were performed with a reactive transport model (PHT3D in FloPy) accounting for isotope effects associated with degradation, sorption, and diffusion, to evaluate the potential of CSIA data from aquifers in assessing degradation in aquitards. The model simulated a trichloroethylene (TCE) DNAPL and its pollution plume within an aquifer-aquitard-aquifer system. Sequential reductive dechlorination to ethene and sorption were uniform in the aquitard and did not occur in the aquifer. After 10 years of loading the aquitard through diffusion from the plume, subsequent source removal triggered release of TCE by back-diffusion. In the upper aquifer, during the loading phase, δ13C-TCE was slightly enriched (up to 2‰) due to diffusion effects stimulated by degradation in the aquitard. In the upper aquifer, during the release phase, (i) source removal triggered a huge δ13C increase especially for higher CEs, (ii) moreover, downstream decreasing isotope ratios (caused by downgradient later onset of the release phase) with temporal increasing isotope ratios reflect aquitard degradation (as opposed to downstream increasing and temporally constant isotope ratios in reactive aquifers), and (iii) the carbon isotope mass balance (CIMB) enriched up to 4‰ as lower CEs (more depleted, less sorbing) have been transported deeper into the aquitard. Thus, enriched CIMB does not indicate oxidative transformation in this system. The CIMB enrichment enhanced with more sorption and lower aquitard thickness. Thin aquitards are quicker flushed from lower CEs leading to faster CIMB enrichment over time. CIMB enrichment is smaller or nearly absent when daughter products accumulate. Aquifer CSIA patterns indicative of aquitard degradation were similar in case of linear decreasing rate constants but contrasted with previous simulations assuming a thin bioactive zone. The Rayleigh equation systematically underestimates the extent of TCE degradation in aquifer samples especially during the loading phase and for conditions leading to long remediation time frames (low groundwater flow velocity, thicker aquitards, strong sorption in the aquitard). The Rayleigh equation provides a good and useful picture on aquitard degradation during the release phase throughout the sensitivity analysis. This modelling study provides a framework on how aquifer CSIA data can inform on the occurrence of aquitard degradation and its pitfalls.
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- 2019
4. Degradation of 4-bromophenol by Ochrobactrum sp. HI1 isolated from desert soil: pathway and isotope effects
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Alicia A. Taylor, Anat Bernstein, Tomasz Kuder, Faina Gelman, Rotem Golan, and Zeev Ronen
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Benzenetriol ,Environmental Engineering ,Bioengineering ,010501 environmental sciences ,Chemical Fractionation ,Ochrobactrum ,01 natural sciences ,Microbiology ,Hydroxylation ,03 medical and health sciences ,chemistry.chemical_compound ,Phenols ,RNA, Ribosomal, 16S ,Kinetic isotope effect ,Environmental Chemistry ,Phylogeny ,Soil Microbiology ,0105 earth and related environmental sciences ,Isotope analysis ,0303 health sciences ,Carbon Isotopes ,Isotope ,030306 microbiology ,Chemistry ,Biodegradation ,Pollution ,Aerobiosis ,Biodegradation, Environmental ,Isotopes of carbon ,Environmental chemistry ,Degradation (geology) ,Desert Climate - Abstract
Anthropogenic activities have introduced elevated levels of brominated phenols to the environment. These compounds are associated with toxic and endocrine effects, and their environmental fate is of interest. An aerobic strain Ochrobactrum sp. HI1 was isolated from soils in the vicinity of a bromophenol production plant and tested for its ability to degrade 4-bromophenol (4-BP). A ring hydroxylation pathway of degradation was proposed, using the evidence from degradation intermediates analysis and multi-element (C, Br, H) compound-specific isotope analysis. Benzenetriol and 4-bromocatechol were detected during degradation of 4-bromophenol. Degradation resulted in a normal carbon isotope effect (eC = −1.11 ± 0.09‰), and in insignificant bromine and hydrogen isotope fractionation. The dual C–Br isotope trend for ring hydroxylation obtained in the present study differs from the trends expected for reductive debromination or photolysis. Thus, the isotope data reported herein can be applied in future field studies to delineate aerobic biodegradation processes and differentiate them from other natural attenuation processes.
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- 2018
5. Carbon Isotope Fractionation of 1,2-Dibromoethane by Biological and Abiotic Processes
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Paul G. Koster van Groos, R. Paul Philp, Sheryl H. Streger, Paul B. Hatzinger, Simon Vainberg, and Tomasz Kuder
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0301 basic medicine ,Abiotic component ,Carbon Isotopes ,Chemistry ,030106 microbiology ,General Chemistry ,Fractionation ,010501 environmental sciences ,Biodegradation ,Chemical Fractionation ,01 natural sciences ,Ethylene Dibromide ,03 medical and health sciences ,Isotope fractionation ,Biodegradation, Environmental ,Isotopes of carbon ,Environmental chemistry ,Environmental Chemistry ,Microbial biodegradation ,Water pollution ,Anaerobic exercise ,Groundwater ,0105 earth and related environmental sciences - Abstract
1,2-Dibromethane (EDB) is a toxic fuel additive that likely occurs at many sites where leaded fuels have impacted groundwater. This study quantified carbon (C) isotope fractionation of EDB associated with anaerobic and aerobic biodegradation, abiotic degradation by iron sulfides, and abiotic hydrolysis. These processes likely contribute to EDB degradation in source zones (biodegradation) and in more dilute plumes (hydrolysis). Mixed anaerobic cultures containing dehalogenating organisms (e.g., Dehaloccoides spp.) were examined, as were aerobic cultures that degrade EDB cometabolically. Bulk C isotope enrichment factors (ebulk) associated with biological degradation covered a large range, with mixed anaerobic cultures fractionating more (ebulk from −8 to −20‰) than aerobic cultures (ebulk from −3 to −6‰). ebulk magnitudes associated with the abiotic processes (dihaloelimination by FeS/FeS2 and hydrolysis) were large but fairly well constrained (ebulk from −19 to −29‰). As expected, oxidative mechanisms fra...
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- 2018
6. Assessment of anaerobic biodegradation of bis(2-chloroethyl) ether in groundwater using carbon and chlorine compound-specific isotope analysis
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Ravi Kolhatkar, Daniel C. Segal, and Tomasz Kuder
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chemistry.chemical_classification ,Environmental Engineering ,Sulfide ,010401 analytical chemistry ,chemistry.chemical_element ,Ether ,010501 environmental sciences ,Biodegradation ,01 natural sciences ,Pollution ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Environmental chemistry ,Chlorine ,Environmental Chemistry ,Degradation (geology) ,Microcosm ,Waste Management and Disposal ,Carbon ,Groundwater ,0105 earth and related environmental sciences - Abstract
Carbon and chlorine compound specific isotope analysis (CSIA) of bis(2-chloroethyl) ether (BCEE) was performed to distinguish the primary processes contributing to observed concentration reductions in an anaerobic groundwater plume. Laboratory microcosms were constructed to demonstrate and obtain isotopic enrichment factors and dual-element CSIA trends from two potential transformation processes (1) anaerobic biodegradation using saturated sediment samples from the field site (eC = − 14.8 and eCl = − 5.0) and (2) abiotic reactions with sulfide nucleophiles in water (eC = − 12.8 and eCl = − 5.0). The results suggested a nucleophilic, SN2-type dechlorination as the mechanism of biodegradation of BCEE. Identical dual-element CSIA trends observed in the field and in the microcosm samples suggested that the same degradation mechanism was responsible for BCEE degradation in the field. While biodegradation was the likely dominant mechanism of BCEE mass destruction in the aquifer, potential contribution of abiotic hydrolysis to the net budget of degradation could not be confidently excluded. To our knowledge, this is the first unequivocal demonstration of BCEE biodegradation at a field site.
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- 2017
7. Microbial oxidation of tri-halogenated phenols - Multi-element isotope fractionation
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Faina Gelman, Anat Bernstein, Tomasz Kuder, and Rotem Golan
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0301 basic medicine ,030106 microbiology ,Inorganic chemistry ,chemistry.chemical_element ,010501 environmental sciences ,Biodegradation ,01 natural sciences ,Microbiology ,Redox ,Biomaterials ,Hydroxylation ,03 medical and health sciences ,chemistry.chemical_compound ,Isotope fractionation ,chemistry ,Isotopes of carbon ,Kinetic isotope effect ,Halogen ,Chlorine ,Waste Management and Disposal ,0105 earth and related environmental sciences - Abstract
The tri-halogenated phenols, 2,4,6-trichlorophenol (TCP) and 2,4,6-tribromophenol (TBP), are known as groundwater contaminants. Indigenous bacteria may degrade these compounds aerobically or anaerobically, with the aerobic process initiated by ring hydroxylation at the para position. Stable isotope analysis can be proposed as a tool for determining biodegradation process of these compounds in the environment. However, to date isotope fractionation in microbial oxidation of trihalogenated phenols has not been reported. This work aimed to investigate carbon and halogen (chlorine or bromine) isotope effects associated with the process by two microbial strains: Achromobacter piechaudii strain TBPZ which is capable of degrading both TCP and TBP, and Ralstonia eutropha strain JMP 134 which was extensively studied in the past to characterize the TCP oxidation mechanism. Low carbon isotope effects were observed in all degradation experiments. Opposite fractionation trends were detected for TCP and TBP by strain TBPZ (eC = −0.51 ± 0.28‰ and eC = +0.68 ± 0.26‰, respectively). Strain JMP presented a low inverse carbon isotope effect for TCP oxidation (eC = +0.26 ± 0.13‰), contrary to that of strain TBPZ. For the halogen atoms, low yet significant normal halogen isotope effects were detected in all cases (−0.49 to −1.43‰ for chlorine, and −0.42‰ for bromine). The results suggest that the observed isotope effects do not reflect the ring hydroxylation. Instead, they likely represent rate-limiting steps preceding the catalysis of hydroxylation. Dual-element isotope effects observed in this study did not enable distinguishing between oxidation and reduction of TCP. The oxidation and reduction dual-element trends were distinct for TBP. However, it is uncertain if this difference can be extrapolated from the laboratory to the field, since the isotope effects in TBP degradation are strongly influenced by slow steps prior to hydroxylation.
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- 2019
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8. 3D-CSIA: Carbon, Chlorine, and Hydrogen Isotope Fractionation in Transformation of TCE to Ethene by a Dehalococcoides Culture
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Paul Philp, Tomasz Kuder, Boris M. van Breukelen, and Mindy Vanderford
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Dehalococcoides ,Carbon Isotopes ,biology ,Hydrogen ,Inorganic chemistry ,chemistry.chemical_element ,Chloroflexi ,General Chemistry ,Ethylenes ,biology.organism_classification ,Carbon ,Gas Chromatography-Mass Spectrometry ,Trichloroethylene ,chemistry ,Nucleophile ,Isotopes of carbon ,Kinetic isotope effect ,Reductive dechlorination ,Outer sphere electron transfer ,Chlorine ,Environmental Chemistry ,Oxidation-Reduction ,Water Pollutants, Chemical - Abstract
Carbon (C), chlorine (Cl), and hydrogen (H) isotope effects were determined during dechlorination of TCE to ethene by a mixed Dehalococcoides (Dhc) culture. The C isotope effects for the dechlorination steps were consistent with data published in the past for reductive dechlorination (RD) by Dhc. The Cl effects (combined with an inverse H effect in TCE) suggested that dechlorination proceeded through nucleophilic reactions with cobalamin rather than by an electron transfer mechanism. Depletions of (37)Cl in daughter compounds, resulting from fractionation at positions away from the dechlorination center (secondary isotope effects), further support the nucleophilic dechlorination mechanism. Determination of C and Cl isotope ratios of the reactants and products in the reductive dechlorination chain offers a potential tool for differentiation of Dhc activity from alternative transformation mechanisms (e.g., aerobic degradation and reductive dechlorination proceeding via outer sphere mechanisms), in studies of in situ attenuation of chlorinated ethenes. Hydrogenation of the reaction products (DCE, VC, and ethene) showed a major preference for the (1)H isotope. Detection of depleted dechlorination products could provide a line of evidence in discrimination between alternative sources of TCE (e.g., evolution from DNAPL sources or from conversion of PCE).
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- 2013
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9. Demonstration of Compound-Specific Isotope Analysis of Hydrogen Isotope Ratios in Chlorinated Ethenes
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Tomasz Kuder and Paul Philp
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Carbon Isotopes ,Chromatography, Gas ,Aqueous solution ,Halogenation ,Compound specific ,Hydrogen isotope ,Radiochemistry ,Uncertainty ,chemistry.chemical_element ,Benzene ,General Chemistry ,Environment ,Ethylenes ,Reference Standards ,Mass Spectrometry ,Dichloroethylenes ,Trichloroethylene ,Chromium ,chemistry ,Isotope Labeling ,Environmental chemistry ,Environmental Chemistry ,Pyrolysis ,Hydrogen ,Isotope analysis - Abstract
High-temperature pyrolysis conversion of organic analytes to H(2) in hydrogen isotope ratio compound-specific isotope analysis (CSIA) is unsuitable for chlorinated compounds such as trichloroethene (TCE) and cis-1,2-dichloroethene (DCE), due to competition from HCl formation. For this reason, the information potential of hydrogen isotope ratios of chlorinated ethenes remains untapped. We present a demonstration of an alternative approach where chlorinated analytes reacted with chromium metal to form H(2) and minor amounts of HCl. The values of δ(2)H were obtained at satisfactory precision (± 10 to 15 per thousand), however the raw data required daily calibration by TCE and/or DCE standards to correct for analytical bias that varies over time. The chromium reactor has been incorporated into a purge and trap-CSIA method that is suitable for CSIA of aqueous environmental samples. A sample data set was obtained for six specimens of commercial product TCE. The resulting values of δ(2)H were between -184 and +682 ‰, which significantly widened the range of manufactured TCE δ(2)H signatures identified by past work. The implications of this finding to the assessment of TCE contamination are discussed.
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- 2013
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10. Modeling 3D-CSIA data
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Mindy Vanderford, Héloïse A.A. Thouement, Tomasz Kuder, Paul Philp, Boris M. van Breukelen, and Philip E. Stack
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Halogenation ,0208 environmental biotechnology ,chemistry.chemical_element ,02 engineering and technology ,010501 environmental sciences ,01 natural sciences ,Vinyl chloride ,chemistry.chemical_compound ,Chlorinated ethenes ,Isotopes ,Computational chemistry ,Kinetic isotope effect ,Chlorine ,Reductive dechlorination ,Environmental Chemistry ,Isotopologue ,Groundwater ,0105 earth and related environmental sciences ,Water Science and Technology ,Stable isotopes ,Dehalococcoides ,biology ,Stable isotope ratio ,Chloroflexi ,Ethylenes ,Models, Theoretical ,Reactive transport modeling ,biology.organism_classification ,Carbon ,Trichloroethylene ,020801 environmental engineering ,Kinetics ,Contaminated sites ,Biodegradation, Environmental ,chemistry ,13. Climate action ,Intramolecular force ,Environmental chemistry ,Natural attenuation ,Water Pollutants, Chemical ,Environmental Monitoring ,Hydrogen - Abstract
Reactive transport modeling of multi-element, compound-specific isotope analysis (CSIA) data has great potential to quantify sequential microbial reductive dechlorination (SRD) and alternative pathways such as oxidation, in support of remediation of chlorinated solvents in groundwater. As a key step towards this goal, a model was developed that simulates simultaneous carbon, chlorine, and hydrogen isotope fractionation during SRD of trichloroethene, via cis-1,2-dichloroethene (and trans-DCE as minor pathway), and vinyl chloride to ethene, following Monod kinetics. A simple correction term for individual isotope/isotopologue rates avoided multi-element isotopologue modeling. The model was successfully validated with data from a mixed culture Dehalococcoides microcosm. Simulation of Cl-CSIA required incorporation of secondary kinetic isotope effects (SKIEs). Assuming a limited degree of intramolecular heterogeneity of δ37Cl in TCE decreased the magnitudes of SKIEs required at the non-reacting Cl positions, without compromising the goodness of model fit, whereas a good fit of a model involving intramolecular CCl bond competition required an unlikely degree of intramolecular heterogeneity. Simulation of H-CSIA required SKIEs in H atoms originally present in the reacting compounds, especially for TCE, together with imprints of strongly depleted δ2H during protonation in the products. Scenario modeling illustrates the potential of H-CSIA for source apportionment.
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- 2017
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11. Carbon Isotope Fractionation in Reactions of 1,2-Dibromoethane with FeS and Hydrogen Sulfide
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Y. Thomas He, Tomasz Kuder, John T. Wilson, and Paul Philp
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Carbon Isotopes ,Ethylene ,Hydrogen sulfide ,Inorganic chemistry ,General Chemistry ,Fractionation ,Chemical Fractionation ,engineering.material ,Ethylene Dibromide ,Kinetics ,chemistry.chemical_compound ,Solubility ,chemistry ,Mackinawite ,Isotopes of carbon ,engineering ,Environmental Chemistry ,1,2-Dibromoethane ,SN2 reaction ,Ferrous Compounds ,Hydrogen Sulfide ,Environmental Restoration and Remediation ,Nuclear chemistry - Abstract
EDB (1,2-dibromoethane) is frequently detected at sites impacted by leaded gasoline. In reducing environments, EDB is highly susceptible to abiotic degradation. A study was conducted to evaluate the potential of compound-specific isotope analysis (CSIA) in assessing abiotic degradation of EDB in sulfate-reducing environments. Water containing EDB was incubated in sealed vials with various combinations of Na(2)S (0.7 mM) and mackinawite (FeS) (180 mM). Degradation rates in vials containing FeS exceeded those in Na(2)S-only controls. In the presence of FeS, first-order constants ranged from 0.034 ± 0.002 d(-1) at pH 6 to 0.081 ± 0.005 d(-1) at pH 8.5. In the presence of FeS, products from reductive debromination (ethylene) and from S(N)2 substitution with S(II) nucleophiles were detected (1,2-dithioethane, DTA). Relatively high yields of DTA suggested that the S(N)2 reactions were not mediated by HS(-) only but likely also included reactions mediated by FeS surface. Significant carbon isotope effects were observed for nucleophilic substitution by HS(-) (ε = -31.6 ± 3.7‰) and for a combination of reductive and substitution pathways in the presence of FeS (-30.9 ± 0.7‰), indicating good site assessment potential of CSIA. The isotope effects (KIEs) observed in the presence of FeS corroborated the predominance of S(N)2 substitution by nucleophiles combined with two-electron transfer reductive debromination.
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- 2012
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12. Effects of Volatilization on Carbon and Hydrogen Isotope Ratios of MTBE
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Jon Allen, Paul Philp, and Tomasz Kuder
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Methyl Ethers ,Pollution ,Air Pollutants ,Carbon Isotopes ,Volatilisation ,Hydrogen ,media_common.quotation_subject ,Soil vapor extraction ,chemistry.chemical_element ,General Chemistry ,Deuterium ,Tritium ,Carbon ,chemistry ,Environmental chemistry ,Environmental Chemistry ,Volatilization ,Gasoline ,Air sparging ,Enrichment factor ,media_common - Abstract
Contaminant attenuation studies utilizing CSIA (compound-specific isotope analysis) routinely assume that isotope effects (IEs) result only from degradation. Experimental results on MTBE behavior in diffusive volatilization and dynamic vapor extraction show measurable changes in the isotope ratios of the MTBE remaining in the aqueous or nonaqueous phase liquid (NAPL) matrix. A conceptual model for interpretation of those IEs is proposed, based on the physics of liquid-air partitioning. Normal or inverse IEs were observed for different volatilization scenarios. The range of carbon enrichment factors (epsilon) was from +0.7 per thousand (gasoline vapor extraction) to -1 per thousand (diffusive volatilization of MTBE from gasoline), the range of hydrogen epsilon was from +7 per thousand (gasoline vapor extraction) to -12 per thousand (air sparging of aqueous MTBE). The observed IEs are lower than those associated with MTBE degradation. However, under a realistic scenario for MTBE vapor removal, their magnitude is within the detection limits of CSIA. The potential for interference of those IEs is primarily in confusing the interpretation of samples with a small extent of fractionation and where only carbon CSIA data are available. The IEs resulting from volatilization and biodegradation, respectively, can be separated by combined carbon and hydrogen 2D-CSIA.
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- 2009
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13. Distinguishing Abiotic and Biotic Transformation of Tetrachloroethylene and Trichloroethylene by Stable Carbon Isotope Fractionation
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Elizabeth C. Butler, Yiran Dong, Lee R. Krumholz, Xiaoming Liang, R. Paul Philp, and Tomasz Kuder
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Carbon Isotopes ,Tetrachloroethylene ,Trichloroethylene ,Chemistry ,chemistry.chemical_element ,General Chemistry ,Fractionation ,chemistry.chemical_compound ,Isotope fractionation ,Isotopes of carbon ,Environmental chemistry ,Kinetic isotope effect ,Reductive dechlorination ,Environmental Chemistry ,Carbon - Abstract
Significant carbon isotope fractionation was observed during FeS-mediated reductive dechlorination of tetrachloroethylene (PCE) and trichloroethylene (TCE). Bulk enrichment factors (E(bulk)) for PCE were -30.2 +/- 4.3 per thousand (pH 7), -29.54 +/- 0.83 per thousand (pH 8), and -24.6 +/- 1.1 per thousand (pH 9). For TCE, E(bulk) values were -33.4 +/- 1.5 per thousand (pH 8) and -27.9 +/- 1.3 per thousand (pH 9). A smaller magnitude of carbon isotope fractionation resulted from microbial reductive dechlorination by two isolated pure cultures (Desulfuromonas michiganensis strain BB1 (BB1) and Sulfurospirillum multivorans (Sm)) and a bacterial consortium (BioDechlor INOCULUM (BDI)). The E(bulk) values for biological PCE microbial dechlorination were -1.39 +/- 0.21 per thousand (BB1), -1.33 +/- 0.13 per thousand (Sm), and -7.12 +/- 0.72 per thousand (BDI), while those for TCE were -4.07 +/- 0.48 per thousand (BB1), -12.8 +/- 1.6 per thousand (Sm), and -15.27 +/- 0.79 per thousand (BDI). Reactions were investigated by calculation of the apparent kinetic isotope effect for carbon (AKIEc), and the results suggest that differences in isotope fractionation for abiotic and microbial dechlorination resulted from the differences in rate-limiting steps during the dechlorination reaction. Measurement of more negative E(bulk) values at sites contaminated with PCE and TCE may suggest the occurrence of abiotic reductive dechlorination by FeS.
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- 2007
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14. Modern geochemical and molecular tools for monitoring in-situ biodegradation of MTBE and TBA
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Tomasz Kuder and Paul Philp
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Environmental Engineering ,Waste management ,Stable isotope ratio ,Chemistry ,Environmental remediation ,Biodegradation ,Contamination ,Pollution ,Applied Microbiology and Biotechnology ,In situ biodegradation ,Environmental chemistry ,Gasoline ,Waste Management and Disposal ,Groundwater ,Oxygenate - Abstract
Methyl tert-butyl ether (MTBE) is a major gasoline oxygenate worldwide and a widespread groundwater contaminant. Natural attenuation of MTBE is of practical interest as a cost effective and non-invasive approach to remediation of contaminated sites. The effectiveness of MTBE attenuation can be difficult to demonstrate without verification of the occurrence of in-situ biodegradation. The aim of this paper is to discuss the recent progress in assessing in-situ biodegradation. In particular, compound-specific isotope analysis (CSIA), molecular techniques based on nucleic acids analysis and in-situ application of stable isotope labels will be discussed. Additionally, attenuation of tert-butyl alcohol (TBA) is of particular interest, as this compound tends to occur alongside MTBE introduced from the gasoline or produced by (mainly anaerobic) biodegradation of MTBE.
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- 2007
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15. Stable Isotope Analysis of MTBE to Evaluate the Source of TBA in Ground Water
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Seth J. Daugherty, Paul Philp, John T. Wilson, Tomasz Kuder, and Ravi Kolhatkar
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Source area ,Chemistry ,Isotopes of carbon ,Environmental chemistry ,Gasoline ,Biodegradation ,Groundwater ,Oxygenate ,Water Science and Technology ,Civil and Structural Engineering ,Plume ,Isotope analysis - Abstract
Although tert-butyl alcohol (TBA) has not been used as a fuel oxygenate in Orange County, California, the concentrations of TBA in ground water at gasoline spill sites are high compared those of the conventional fuel oxygenate methyl tert-butyl ether (MTBE). In the year 2002, the geometric mean concentration of TBA was 839 lg/L compared to 627 lg/L for MTBE. There are two plausible sources of TBA, the TBA originally present in the gasoline and biodegradation of MTBE to TBA. Thirteen sites where the concentration of TBAwas >10 mg/L were selected for study. Biodegradation was evaluated by determining the stable carbon isotope ratio (d 13 C) of MTBE in the ground water. If MTBE was biodegraded, the residual MTBE should be enriched in the heavier carbon isotope 13 C. The historical highest concentration of MTBE in each monitoring well and the d 13 C of MTBE in the ground water were used to estimate the concentration of TBA produced from biodegradation of MTBE. Then, the estimated concentration of TBA was compared to the measured concentration. At each site, comparisons were made for the well in the source area, and the well in the plume outside the source area, that had the highest concentration of TBA. In the wells in the source areas, the estimate of TBA production accounted for the majority of TBA at 4 of the 13 sites. In the wells in the plume outside of the source area, the estimate accounted for the majority of TBA at six sites.
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- 2005
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16. Use of Compound-Specific Stable Carbon Isotope Analyses To Demonstrate Anaerobic Biodegradation of MTBE in Groundwater at a Gasoline Release Site
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John T. Wilson, Ravi Kolhatkar, Tomasz Kuder, Paul Philp, and Jon Allen
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Methyl Ethers ,Waste management ,Carbon-13 ,Ether ,General Chemistry ,Models, Theoretical ,Biodegradation ,Bacteria, Anaerobic ,chemistry.chemical_compound ,Biodegradation, Environmental ,chemistry ,Isotopes of carbon ,Environmental chemistry ,Carcinogens ,Environmental Chemistry ,Gasoline ,Water Microbiology ,Water pollution ,Soil Microbiology ,Water Pollutants, Chemical ,Groundwater ,Isotope analysis - Abstract
Currently it is unclear if natural attenuation is an appropriate remedial approach for groundwater impacted by methyl tertiary butyl ether (MTBE). Site-characterization data at most gasoline release sites are adequate to evaluate attenuation in MTBE concentrations over time or distance. But, demonstrating natural biodegradation of MTBE requires laboratory microcosm studies, which could be expensive and time-consuming. Recently, compound-specific carbon isotope ratio analyses (13C/12C expressed in delta13C notation) have been used to demonstrate aerobic biodegradation of MTBE in laboratory incubations. This study explored the potential of this approach to distinguish MTBE biodegradation from other abiotic processes in an anaerobic groundwater plume that showed extensive decrease in MTBE concentrations. To our knowledge, this is the first study to use delta13C of MTBE data in groundwater and laboratory microcosms to demonstrate anaerobic biodegradation of MTBE. The delta13C of MTBE in monitoring wells increased by up to 31 per thousand (-25.5 per thousand to +5.5 per thousand) along with a 40-fold decrease in MTBE concentrations. Anaerobic incubations in laboratory microcosms indicated up to 20-fold reduction in MTBE concentrations with a corresponding increase in delta13C of MTBE of up to 33.4 per thousand (-28.7 per thousand to +4.7 per thousand) in live microcosms. Little enrichment was observed in autoclaved controls. These results demonstrate that anaerobic biodegradation was the dominant natural attenuation mechanism for MTBE at this site. The estimated isotopic enrichment factors (epsilon(field) = -8.10 per thousand and epsilon(lab) = -9.16 per thousand) were considerably larger than the range (-1.4 per thousand to -2.4 per thousand) previously reported for aerobic biodegradation of MTBE in laboratory incubations. These observations strongly suggest that delta13C of MTBE could be potentially useful as an "indicator" of in-situ MTBE biodegradation.
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- 2002
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17. The Use of the Isotopic Composition of Individual Compounds for Correlating Spilled Oils and Refined Products in the Environment with Suspected Sources
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Tomasz Kuder, Jon Allen, and R. Paul Philp
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Chromatography ,Stable isotope ratio ,chemistry.chemical_element ,Management, Monitoring, Policy and Law ,Mass spectrometry ,Isotopic composition ,Isotopic signature ,chemistry ,Isotopes of carbon ,Environmental chemistry ,Gas chromatography ,Gas chromatography–mass spectrometry ,Carbon ,Waste Management and Disposal - Abstract
Correlation of crude oils, or refined products, in the environment with suspected sources is typically undertaken through the use of GC and GCMS and in certain cases bulk carbon isotope compositions. However, with crude condensates, or refined products in particular, the absence, or low concentration, of biomarkers precludes their successful use for making unique correlations. An alternative and, sometimes, complimentary technique for correlation of such products is evolving through the use of combined gas chromatography-isotope ratio mass spectrometry (GCIRMS). This approach permits determination of the carbon and hydrogen isotopic composition of individual compounds in the crude oil or refined product to produce isotopic fingerprints for use in correlation studies. In this paper, it is proposed to review applications of GCIRMS to the correlation of various spilled products with their suspected sources in different environments. Whilst not proposing that this technique will replace GC or GCMS; it is prop...
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- 2002
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18. Carbon dynamics in peat bogs: Insights from substrate macromolecular chemistry
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Michael A. Kruge and Tomasz Kuder
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chemistry.chemical_classification ,Vascular plant ,Atmospheric Science ,Global and Planetary Change ,geography ,Peat ,geography.geographical_feature_category ,biology ,Chemistry ,Ecology ,biology.organism_classification ,Sphagnum ,Anoxic waters ,Boreal ,Environmental chemistry ,Litter ,Environmental Chemistry ,Organic matter ,Bog ,General Environmental Science - Abstract
The macromolecular compositions of subfossil plants from boreal Sphagnum bogs and restiad bogs (New Zealand) have been studied by pyrolysis-gas chromatography/mass spectrometry to evaluate the extent of degradation in the anoxic zone (catotelm) of a peat bog. Degradation of vascular plant polysaccharides was apparent only into the upper catotelm. Sphagnum was degraded more slowly than vascular plants, but no cessation of degradation was observed. The inferred rate of degradation varied depending on type of plant, extent of aerobic, precatotelmic degradation, and mode of litter deposition (rooting versus at the surface). Environmental forcing on anaerobic carbon dynamics would potentially be largest if the hydrology was disturbed at a wet and vascular plant-rich site. Peat deposited under a dry regime would be relatively inert in anaerobic conditions. Although catotelmic degradation is usually not extensive, in some cases, if labile organic matter is retained in the aerobic phase (e.g., restiad bogs) a major fraction of peat is degraded in catotelm, potentially resulting in a delayed major export of 14 C-old methane.
- Published
- 2001
- Full Text
- View/download PDF
19. Preservation of biomolecules in sub-fossil plants from raised peat bogs — a potential paleoenvironmental proxy
- Author
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Michael A. Kruge and Tomasz Kuder
- Subjects
Eriophorum vaginatum ,geography ,Peat ,geography.geographical_feature_category ,biology ,Macrofossil ,Chemical modification ,biology.organism_classification ,Diagenesis ,chemistry.chemical_compound ,chemistry ,Geochemistry and Petrology ,Botany ,Lignin ,Chemical composition ,Bog - Abstract
The relationship between changes of peat bog hydrology and the mechanisms of decomposition suggests that the chemical modification of biopolymers of peat macrofossils might be used in paleoenvironmental reconstructions. A series of sedge (Eriophorum vaginatum) macrofossils from an Upper Holocene peat profile has been studied by analytical pyrolysis (Py-GC/MS). The major diagenetic changes of biopolymers included loss of ester-bound ferulic and coumaric acids, an increase of oxidation (particularly due to Cα ketones) and shortening of alkyl side-chains, demethylation of methoxy groups of the lignin/polyphenol fraction, loss of pentosan polysaccharides and modification of cellulose (relative increase in the pyrolytic yield of anhydroglucose). The yield of oxidized methoxy-moieties (particularly of Cα ketones) and shortening of alkyl side-chains of methoxyphenols were suggested as the best indicators of oxidative degradation. Statistically significant differences in chemical composition between samples from individual depth increments occur, in part in agreement with a sequence of wet and dry phases determined by paleobotanical analysis. The paleoenvironmental significance of the chemical record of degradation and relationship of paleohydrology reconstructed by the present technique and by means of botanical analysis is discussed. The former was proposed to respond primarily to the frequency of seasonal droughts.
- Published
- 1998
- Full Text
- View/download PDF
20. Environmental and botanical controls on peatification—a comparative study of two New Zealand restiad bogs using Py-GC/MS, petrography and fungal analysis
- Author
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Tomasz Kuder, Michael A. Kruge, J C Shearer, and S.L. Miller
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geography ,Peat ,geography.geographical_feature_category ,biology ,Stratigraphy ,fungi ,Empodisma minus ,food and beverages ,Geology ,biology.organism_classification ,Sphagnum ,Empodisma ,chemistry.chemical_compound ,Fuel Technology ,chemistry ,Mire ,Botany ,Restionaceae ,Lignin ,Economic Geology ,Bog - Abstract
This study shows that chemical properties of two restiad species, Empodisma minus and Sporadanthus traversii , may contribute to their success as peat-formers in a climate of the North Island of New Zealand which is not conducive to raised mire development. Unlike Sphagnum , the equivalent northern hemisphere peat-former, restiads possess lignin in their tissues. In addition, the presence of non-lignin polyphenols (including tannins and phenolic acids) in restiads may be an important factor in peat formation due to the allelopathic decay retardation. Patterns of degradation of plant biopolymers have been examined and the pathway of degradation of monocotyledons (loss of non-lignin phenolic fraction, depolymerization via modification of side chains of β -O-4 lignin, depletion of hemicelluloses) was identified. Trends in chemical change for lignin were not necessarily paralleled by a similar change in the degree of plant structure preservation—an expression of a complex nature of degradation involving the contributions of several processes affecting different classes of biopolymers to different extents. A further finding of this study is that the degree of lignin breakdown, together with proportions of fungal hyphae and petrographic character, indicate that one of the two bogs studied, Moanatuatua, has undergone far more aerobic decay throughout its development than has its climatic and vegetational equivalent, Kopouatai. This is thought to be due to differing water tables in the two sedimentary environments. Moanatuatua developed in a flood plain distant from the sea with a migrating river system, while Kopouatai developed near the sea. A high degree of natural peat decomposition at Moanatuatua most probably precluded any further rapid decay after recent agricultural drainage.
- Published
- 1998
- Full Text
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21. Validation of adsorbents for sample preconcentration in compound-specific isotope analysis of common vapor intrusion pollutants
- Author
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Thomas E. McHugh, Tomasz Kuder, Monika Klisch, and R. Paul Philp
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Pollutant ,Analyte ,Air Pollutants ,Carbon Isotopes ,Volatile Organic Compounds ,Chromatography ,Chemistry ,Organic Chemistry ,Thermal desorption ,Reproducibility of Results ,Water ,General Medicine ,Chemical Fractionation ,Biochemistry ,Gas Chromatography-Mass Spectrometry ,Analytical Chemistry ,chemistry.chemical_compound ,Adsorption ,Models, Chemical ,Environmental chemistry ,Desorption ,Vapor intrusion ,Sample collection ,Benzene - Abstract
Isotope ratios of volatile organic compounds (VOCs) in the environment are often of interest in contaminant fate studies. Adsorbent preconcentration-thermal desorption of VOCs can be used to collect environmental vapor samples for compound-specific isotope analysis (CSIA). While active adsorbent samplers offer logistic benefits in handling large volumes of air, their performance in preserving VOCs isotope ratios was not previously tested under sampling conditions corresponding to typical indoor air sampling conditions. In this study, the performance of selected adsorbents was tested for preconcentration of TCE (for determination of C and Cl isotope ratios), PCE (C and Cl) and benzene (C and H). The key objective of the study was to identify the adsorbent(s) permitting preconcentration of the target VOCs present in air at low μg/m3 concentrations, without significant alteration of their isotope ratios. Carboxen 1016 was found to perform well for the full range of tested parameters. Carboxen 1016 can be recommended for sampling of TCE, PCE and benzene, for CSIA, from air volumes up to 100 L. Variable extent of isotope ratio alteration was observed in the preconcentration of the target VOCs on Carbopack B and Carbopack X, resulting from partial analyte loss via adsorbent bed breakthrough and (possibly) via incomplete desorption. The results from testing the Carbopack B and Carbopack X highlight the need of adsorbent performance validation at conditions fully representative of actual sample collection conditions, and caution against extrapolation of performance data toward more challenging sampling conditions.
- Published
- 2012
22. Use of Compound-Specific Stable Isotope Analysis to Distinguish Between Vapor Intrusion and Indoor Sources of VOCs
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R. P. Philp, Monika Klisch, Tomasz Kuder, and Thomas McHugh
- Published
- 2012
- Full Text
- View/download PDF
23. Use of Compound Specific Stable Isotope Analysis to Distinguish Between Vapor Intrusion and Indoor Sources of VOCs
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Monika Klisch, Thomas E. McHugh, R. P. Philp, and Tomasz Kuder
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chemistry.chemical_compound ,Indoor air quality ,Chromatography ,chemistry ,Stable isotope ratio ,Soil gas ,Environmental chemistry ,Vapor intrusion ,Sampling (statistics) ,Humidity ,Sample collection ,Benzene - Abstract
The objective of the present study is an empirical validation of selected adsorbents for preconcentration of TCE, PCE and benzene in air samples containing low concentrations of these VOCs. For validation of adsorbent tube performance, we sought to: 1) using reference data, select adsorbent-analyte pairings that would be likely to offer good quantitative recovery of the target VOCs; and 2) for those adsorbent-analyte pairings, evaluate sampling conditions that are representative of sampling indoor air and soil gas with respect to sample volume, humidity, mass of target VOC, mass of non-target VOCs, and holding time between sample collection and analysis; 3) investigate the recovery of target analytes mass and any associated isotope effects. The study results demonstrated fracrtionation-free performance for Carboxen 1016. These results allow precise isotope ratio analysis into vapor intrusion site assessment protocols and other applications where VOCs of interest are present at low ug/m3 concentrations.
- Published
- 2012
- Full Text
- View/download PDF
24. Application of CSIA to distinguish between vapor intrusion and indoor sources of VOCs
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Kyle Gorder, Erik Dettenmaier, Stephanie Fiorenza, Thomas E. McHugh, Paul Philp, and Tomasz Kuder
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chemistry.chemical_classification ,Carbon Isotopes ,Tetrachloroethylene ,Volatile Organic Compounds ,Organic chemicals ,Stable isotope ratio ,Indoor air ,Environmental engineering ,Sample mass ,General Chemistry ,Gas Chromatography-Mass Spectrometry ,Trichloroethylene ,Investigation methods ,chemistry ,Air Pollution, Indoor ,Utah ,Vapor intrusion ,Housing ,Environmental Chemistry ,Volatile organic compound ,Gases ,Chlorine ,Isotope analysis - Abstract
At buildings with potential for vapor intrusion of volatile organic chemicals (VOCs) from the subsurface, the ability to accurately distinguish between vapor intrusion and indoor sources of VOCs is needed to support accurate and efficient vapor intrusion investigations. We have developed a method for application of compound-specific stable isotope analysis (CSIA) for this purpose that uses an adsorbent sampler to obtain sufficient sample mass from the air for analysis. Application of this method to five residences near Hill Air Force Base in Utah indicates that subsurface and indoor sources of tricholorethene and tetrachloroethene often exhibit distinct carbon and chlorine isotope ratios. The differences in isotope ratios between indoor and subsurface sources can be used to identify the source of these chemicals when they are present in indoor air.
- Published
- 2011
25. Biomarkers and Stable Isotopes in Environmental Forensic Studies
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Tomasz Kuder and R. Paul Philp
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Environmental science - Published
- 2008
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26. Anaerobic biodegradation of ethylene dibromide and 1,2-dichloroethane in the presence of fuel hydrocarbons
- Author
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Ronald W. Falta, Tomasz Kuder, James K. Henderson, John T. Wilson, and David L. Freedman
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chemistry.chemical_classification ,Waste management ,Ethylene Dibromide ,Xylene ,General Chemistry ,Contamination ,Biodegradation ,Hydrocarbons, Aromatic ,chemistry.chemical_compound ,Kinetics ,Hydrocarbon ,Biodegradation, Environmental ,chemistry ,Isotopes ,Environmental chemistry ,Environmental Chemistry ,Maximum Contaminant Level ,Anaerobiosis ,Ethylene Dichlorides ,Microcosm ,Methane ,Groundwater ,Fuel Oils - Abstract
Field evidence from underground storage tank sites where leaded gasoline leaked indicates the lead scavengers 1,2-dibromoethane (ethylene dibromide, or EDB) and 1,2-dichloroethane (1,2-DCA) may be present in groundwater at levels that pose unacceptable risk. These compounds are seldom tested for at UST sites. Although dehalogenation of EDB and 1,2-DCA is well established, the effect of fuel hydrocarbons on their biodegradability under anaerobic conditions is poorly understood. Microcosms (2 L glass bottles) were prepared with soil and groundwater from a UST site in Clemson, South Carolina, using samples collected from the source (containing residual fuel) and less contaminated downgradient areas. Anaerobic biodegradation of EDB occurred in microcosms simulating natural attenuation, but was more extensive and predictable in treatments biostimulated with lactate. In the downgradient biostimulated microcosms, EDB decreased below its maximum contaminant level (MCL) (0.05 microg/L) at a first order rate of 9.4 +/- 0.2 yr(-1). The pathway for EDB dehalogenation proceeded mainly by dihaloelimination to ethene in the source microcosms, while sequential hydrogenolysis to bromoethane and ethane was predominant in the downgradient treatments. Biodegradation of EDB in the source microcosms was confirmed by carbon specific isotope analysis, with a delta13C enrichment factor of -5.6 per thousand. The highest levels of EDB removal occurred in microcosms that produced the highest amounts of methane. Extensive biodegradation of benzene, ethylbenzene, toluene and ortho-xylene was also observed in the source and downgradient area microcosms. In contrast, biodegradation of 1,2-DCA proceeded at a considerably slower rate than EDB, with no response to lactate additions. The slower biodegradation rates for 1,2-DCA agree with field observations and indicate that even if EDB is removed to below its MCL, 1,2-DCA may persist.
- Published
- 2008
27. Enrichment of stable carbon and hydrogen isotopes during anaerobic biodegradation of MTBE: microcosm and field evidence
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Phil Kaiser, John T. Wilson, Tomasz Kuder, Jon Allen, Ravi Kolhatkar, and Paul Philp
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Methyl Ethers ,Stable isotope ratio ,Chemistry ,Hydrolysis ,Environmental engineering ,General Chemistry ,Biodegradation ,Enrichment culture ,Bacteria, Anaerobic ,Bioremediation ,Biodegradation, Environmental ,Environmental chemistry ,Accidents ,Carcinogens ,Environmental Chemistry ,Soil Pollutants ,Gasoline ,Microcosm ,Enrichment factor ,Water Pollutants, Chemical ,Isotope analysis ,Hydrogen - Abstract
The conventional approach to evaluate biodegradation of organic contaminants in groundwater is to demonstrate an increase in the concentration of transformation products. This approach is problematic for MTBE from gasoline spills because the primary transformation product (TBA) can also be a component of gasoline. Compound-specific stable isotope analysis may provide a useful alternative to conventional practice. Changes in the delta13C and deltaD of MTBE during biodegradation of MTBE in an anaerobic enrichment culture were compared to the delta13C and deltaD of MTBE in groundwater at nine gasoline spill-sites. The stable isotopes of hydrogen and carbon were extensively fractionated during anaerobic biodegradation of MTBE. The stable isotope enrichment factor for carbon (epsilonC) in the enrichment cultures was -13 (-14.1 to -11.9 at 95% confidence level), and the hydrogen enrichment factor (epsilonH) was -16 (-21 to -11 at 95% confidence level). The isotope enrichment factors for carbon and hydrogen during anaerobic biodegradation indicate that the first reaction is enzymatic hydrolysis of the O-Cmethyl bond. The ratio of epsilonH to epsilonC was consistent between the enrichment culture and the field site that provided the inoculum, and with the other eight sites, suggesting a common degradation pathway. Compound-specific isotope evidence is discussed in terms of its utility for monitoring in situ biodegradation, in particular, for measuring how much MTBE was degraded. For the studied field sites, significant biodegradation of the original mass of MTBE is suggested, in some cases exceeding 90%.
- Published
- 2005
28. Use of Stable Isotopic Analyses to Evaluate the Natural Biodegradation of MTBE in Ground Water
- Author
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Tomasz Kuder, John T. Wilson, Ravi Kolhatkar, and Paul Philp
- Subjects
Chemistry ,Health, Toxicology and Mutagenesis ,Environmental chemistry ,Soil Science ,Environmental Chemistry ,Biodegradation ,Pollution ,Natural (archaeology) ,Groundwater - Published
- 2002
- Full Text
- View/download PDF
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