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While decarbonising economies is a global imperative, offsetting residual emissions remains an essential interim step in avoiding climate breakdown. Carbon credits can be purchased on the voluntary market, but genuine concerns exist as to whether credits, in their current state, will enable the transition to net-zero by 2050. The Cambridge Carbon Impact project seeks to rebuild trust through an independent assessment of carbon credits, using the best methods and data available. By evaluating carbon credits across all dimensions of additionality and risk, and reporting performance through inter-comparable metrics, we aim to clarify concerns, address them where possible and flag them where not, and so allow prospective buyers to make offsets that have the kind of impacts they want. We report the number of credits needed to have the same climate impact as one tonne of CO2 sequestered into geological storage, which we dub one Permanent Additional Carbon Tonne (PACT).

Current policy is driving renewed impetus to restore forests to return ecological function, protect species, sequester carbon and secure livelihoods. Here we assess the contribution of tree planting to ecosystem restoration in tropical and sub-tropical Asia; we synthesize evidence on mortality and growth of planted trees at 176 sites and assess structural and biodiversity recovery of co-located actively restored and naturally regenerating forest plots. Mean mortality of planted trees was 18% 1 year after planting, increasing to 44% after 5 years. Mortality varied strongly by site and was typically ca 20% higher in open areas than degraded forest, with height at planting positively affecting survival. Size-standardized growth rates were negatively related to species-level wood density in degraded forest and plantations enrichment settings. Based on community-level data from 11 landscapes, active restoration resulted in faster accumulation of tree basal area and structural properties were closer to old-growth reference sites, relative to natural regeneration, but tree species richness did not differ. High variability in outcomes across sites indicates that planting for restoration is potentially rewarding but risky and context-dependent. Restoration projects must prepare for and manage commonly occurring challenges and align with efforts to protect and reconnect remaining forest areas. The abstract of this article is available in Bahasa Indonesia in the electronic supplementary material. This article is part of the theme issue 'Understanding forest landscape restoration: reinforcing scientific foundations for the UN Decade on Ecosystem Restoration'., Philosophical Transactions of the Royal Society B: Biological Sciences, 378 (1867), ISSN:0962-8436, ISSN:1471-2970, ISSN:0080-4622

Funder: Arcadia Fund; Id: http://dx.doi.org/10.13039/100012088, Funder: University of Cambridge; Id: http://dx.doi.org/10.13039/501100000735, Funder: Forestry England, Widespread afforestation is a crucial component of climate mitigation strategies worldwide. This presents a significant opportunity for biodiversity conservation if forests are appropriately managed. Within forests, structural and habitat diversity are known to be critical for biodiversity but pragmatic management recommendations are lacking. We make a comprehensive assessment of the effects of habitat variables on bird populations using data from over 4000 ha of forested landscape. We combine high-resolution remote sensing data with comprehensive management databases to classify habitat attributes and measure the response of six taxonomic and functional diversity metrics: species richness, Shannon diversity, functional richness, functional evenness, functional divergence, and functional dispersion. We use a novel approach that combines hierarchical partitioning analysis with linear models to determine the relative importance of different habitat variables for each bird diversity metric. The age class of forest stands was consistently the most important variable across all bird diversity metrics, outperforming other structural measures such as horizontal and vertical heterogeneity and canopy density. Shrub density and gap fraction were each significantly associated with one bird diversity metric. In contrast, variables describing within-stand structural heterogeneity (vertical and horizontal) were generally less important while tree species identity (e.g., conifer or broadleaved) was not significant for any bird diversity metric. Each of the six bird diversity metrics had different patterns of independent variable importance and significance, emphasizing the need to consider multiple diversity metrics in biodiversity assessments. Similarly, the optimal resolution for remote sensing metrics varied between structural variables and bird diversity metrics, suggesting that the use of remote sensing data in biodiversity studies could be greatly improved by first exploring different resolutions and data aggregations. Based on the results from this comprehensive study, we recommend that managers focus on creating habitat diversity at the between-, rather than exclusively within-stand scale, such as by creating a matrix of different age classes, to maximize bird diversity. This recommendation for forest managers is powerful yet pragmatic in its simplicity.

Significance Forest restoration has become a global conservation priority, particularly in the tropics where a significant proportion of remaining forest ecosystems are degraded. To achieve ambitious restoration targets via limited conservation funds, areas that will deliver the greatest biodiversity value must be prioritized. Here, we combine airborne laser scanning with an extensive camera trap dataset to target conservation and restoration across a degraded logged forest gradient. We demonstrate the importance of accounting for three-dimensional habitat structure when defining forest suitability and restoration potential for mammals. Consequently, we provide a robust quantitative framework to prioritize degraded forest restoration based on biodiversity considerations., Tropical forest ecosystems are facing unprecedented levels of degradation, severely compromising habitat suitability for wildlife. Despite the fundamental role biodiversity plays in forest regeneration, identifying and prioritizing degraded forests for restoration or conservation, based on their wildlife value, remains a significant challenge. Efforts to characterize habitat selection are also weakened by simple classifications of human-modified tropical forests as intact vs. degraded, which ignore the influence that three-dimensional (3D) forest structure may have on species distributions. Here, we develop a framework to identify conservation and restoration opportunities across logged forests in Borneo. We couple high-resolution airborne light detection and ranging (LiDAR) and camera trap data to characterize the response of a tropical mammal community to changes in 3D forest structure across a degradation gradient. Mammals were most responsive to covariates that accounted explicitly for the vertical and horizontal characteristics of the forest and actively selected structurally complex environments comprising tall canopies, increased plant area index throughout the vertical column, and the availability of a greater diversity of niches. We show that mammals are sensitive to structural simplification through disturbance, emphasizing the importance of maintaining and enhancing structurally intact forests. By calculating occurrence thresholds of species in response to forest structural change, we identify areas of degraded forest that would provide maximum benefit for multiple high-conservation value species if restored. The study demonstrates the advantages of using LiDAR to map forest structure, rather than relying on overly simplistic classifications of human-modified tropical forests, for prioritizing regions for restoration.

Tropical forest restoration stands to deliver important conservation gains in lowland Southeast Asia, which has suffered some of the world’s highest rates of forest degradation and loss. This promise, however, may be undermined by defaunation driven by ubiquitous wildlife trapping in the region, particularly for forest birds that are part of the multi-million-dollar pet trade. To date, quantification of the impacts of trade-driven trapping on rates of biodiversity recovery from forest restoration has been limited. Here, we use a unique long-term survey dataset to ask how trade-driven trapping may interfere with the expected recovery of avian community under forest restoration, at a flagship ecosystem restoration site in the lowland rainforests of Sumatra, Indonesia. We show that tropical forest restoration is associated with the increases in the abundance of 88% of bird species over time. However, impacts of trapping within more accessible areas of the forest meant that this recovery was dampened for 74% of bird species, relative to levels expected as a result of the magnitude of forest recovery observed. Most species (80%) showed increasingly positive relationships between abundance and site remoteness over the period, a pattern that was found for both species targeted for the pet trade (85% of species) and those trapped opportunistically or as ‘bycatch’ (78% of species). We emphasize the urgency of tackling the emerging threat of pet trade to Southeast Asia’s avian diversity, not least to ensure the effectiveness of efforts towards forest restoration.

Forest degradation through logging is pervasive throughout the world’s tropical forests, leading to changes in the three‐dimensional canopy structure that have profound consequences for wildlife, microclimate and ecosystem functioning. Quantifying these structural changes is fundamental to understanding the impact of degradation, but is challenging in dense, structurally complex forest canopies. We exploit discrete‐return airborne LiDAR surveys across a gradient of logging intensity in Sabah, Malaysian Borneo, and assess how selective logging has affected canopy structure (Plant Area Index, PAI, and its vertical distribution within the canopy). LiDAR products compared well to independent, analogue models of canopy structure produced from detailed ground‐based inventories undertaken in forest plots, demonstrating the potential for airborne LiDAR to quantify the structural impacts of forest degradation at landscape scale, even in some of the world’s tallest and most structurally complex tropical forests. PAI estimates across the plot network exhibited a strong linear relationship with stem basal area (R2 = 0.95). After at least 11‐14 years of recovery, PAI was ~28% lower in moderately logged plots and ~52% lower in heavily logged plots than in old‐growth forest plots. These reductions in PAI are associated with near‐complete lack of trees >30‐m tall, which has not been fully compensated for by increasing plant area lower in the canopy. This structural change drives a marked reduction in the diversity of canopy environments, with the deep, dark understory conditions characteristic of old‐growth forests far less prevalent in logged sites, with full canopy recovery likely to take decades. Synthesis and Applications. Effective management and restoration of tropical forests requires detailed monitoring of the forest and its environment. We demonstrate that airborne LiDAR can effectively map the canopy architecture of the complex tropical forests of Borneo, capturing the three‐dimensional impact of degradation on canopy structure at landscape scales, therefore facilitating efforts to restore and conserve these ecosystems.

The restoration of the Southeast Asian tropical forests is a global priority but is limited by a lack of experience and knowledge regarding tree species performance in the various micro-habitat conditions that are prevalent after disturbance. Here we study the survival, growth, susceptibility to damage and capacity to resprout of 38 Sumatran lowland tropical tree species in a restoration planting trial in several typical post-disturbance microhabitats. 3200 seedlings were planted in four two-hectare blocks in February 2013 at the Hutan Harapan Ecosystem Restoration concession in Sumatra, Indonesia, and subsequently censused every six-months for two years to assess performance and changes in microhabitat conditions. By the end of the experiment overall survival was only 41%, with damage incurred by 55% of the surviving plants. Habitat conditions (light/shade, presence/absence of bamboo and shrubs) and their interactions affected survival in complex ways. Bamboo negatively affected survival whereas shrubs had a positive effect, except where bamboo was also present. Height growth rate increased when sites were light-exposed. Individual species performances also differed across habitats. Defining a minimum threshold of 50% survival as a measure of success in different habitat types, only two species (A. pavonina and N. wallichiana) could be characterized as generalists. Eighteen other species were characterized as specialists with good performance in one-three habitat types. Our findings suggest that enhanced restoration success could be achieved through better species-site matching.

Tree mortality rates are increasing within tropical rainforests as a result of global environmental change. When trees die, gaps are created in forest canopies and carbon is transferred from the living to deadwood pools. However, little is known about the effect of tree-fall canopy gaps on the activity of decomposer communities and the rate of deadwood decay in forests. This means that the accuracy of regional and global carbon budgets is uncertain, especially given ongoing changes to the structure of rainforest ecosystems. Therefore, to determine the effect of canopy openings on wood decay rates and regional carbon flux, we carried out the first assessment of deadwood mass loss within canopy gaps in old-growth rainforest. We used replicated canopy gaps paired with closed canopy sites in combination with macroinvertebrate accessible and inaccessible woodblocks to experimentally partition the relative contribution of microbes vs. termites to decomposition within contrasting understorey conditions. We show that over a 12month period, wood mass loss increased by 63% in canopy gaps compared with closed canopy sites and that this increase was driven by termites. Using LiDAR data to quantify the proportion of canopy openings in the study region, we modelled the effect of observed changes in decomposition within gaps on regional carbon flux. Overall, we estimate that this accelerated decomposition increases regional wood decay rate by up to 18.2%, corresponding to a flux increase of 0.27MgCha-1 year-1 that is not currently accounted for in regional carbon budgets. These results provide the first insights into how small-scale disturbances in rainforests can generate hotspots for decomposer activity and carbon fluxes. In doing so, we show that including canopy gap dynamics and their impacts on wood decomposition in forest ecosystems can help improve the predictive accuracy of the carbon cycle in land surface models.

Population dynamics can be highly variable in the face of environmental heterogeneity, and understanding this variation is central in the study of ecology. Robust management decisions require that we understand how populations respond to management at a range of scales, and under a broad suite of conditions. Population models are potentially valuable tools in addressing this challenge. However, without adequate data, models can fail to produce useful results. Populations of arable weeds are particularly problematic in this respect, as they are widespread and their dynamics are extremely variable. Owing to the inherent cost of collecting data, most studies of plant population dynamics are derived from localized experiments under a small range of environmental conditions, limiting the extent to which variance in population dynamics can be measured. Density-structured models provide a route to rapid, large-scale analysis of population dynamics, and can expand the scale of ecological models that are directly tied to data. Here we extend previous density-structured models to include environmental heterogeneity, variation in management, and to account for inter-population variation. We develop, parameterize, and test hierarchical density-structured models for a common agricultural weed, black-grass (Alopecurus myosuroides). We model the dynamics of this species in response to crop management, using survey data gathered over 4 yr from 364 fields across a network of 45 UK farms. We show that hierarchical density-structured models provide a substantial improvement over their nonhierarchical counterparts. Using these models, we demonstrate that several alternative crop rotations are effective in reducing weed densities. Rotations with high wheat prevalence exhibit the most severe infestations, and diverse rotations generally have lower weed densities. However, a key outcome is that in many cases the effect of crop rotation is small compared to the high variability arising from spatiotemporal heterogeneity. This result highlights the need to monitor and model population dynamics across large spatial and temporal scales in order to account for variation in the drivers of plant dynamics. Our framework for data collection and modeling provides a means to achieve this.

There is growing interest in the ecological value of set-aside habitats around rivers in tropical agriculture. These riparian buffers typically comprise forest or other non-production habitat, and are established to maintain water quality and hydrological processes, while also supporting biodiversity, ecosystem function and landscape connectivity. We investigated the capacity for riparian buffers to act as microclimatic refugia by combining field-based measurements of temperature, humidity and dung beetle communities with remotely sensed data from LiDAR across an oil palm dominated landscape in Borneo. Riparian buffers offer a cool and humid habitat relative to surrounding oil palm plantations, with wider buffers characterised by conditions comparable to riparian sites in continuous logged forest. High vegetation quality and topographic sheltering were strongly associated with cooler and more humid microclimates in riparian habitats across the landscape. Variance in beetle diversity was also predicted by both proximity-to-edge and microclimatic conditions within the buffer, suggesting that narrow buffers amplify the negative impacts that high temperatures have on biodiversity. Synthesis and applications. Widely legislated riparian buffer widths of 20–30 m each side of a river may provide drier and less humid microclimatic conditions than continuous forest. Adopting wider buffers and maintaining high vegetation quality will ensure set-asides established for hydrological reasons bring co-benefits for terrestrial biodiversity, both now, and in the face of anthropogenic climate change. Published version This work was funded by the Natural Environmental Research Council (NERC) through the Human Modified Tropical Forests programme (NE/K016261/1; NE/K016377/1), as well as the Newton-Ungku Omar Fund via the British Council and Malaysian Industry Government Group for High Technology (216433953). NERC also funded the PhD studentship for J.W. (NE/L002485/1) and research fellowship of T.J. (NE/S01537X/1). We are grateful to the Sabah Biodiversity Council for permission to conduct the fieldwork (S.H.L.: JKM/MBS.1000-2/2JLD.5(13); J.W.: JKM/MBS. 1000-2/2JLD.7(83); E.M.S.: JKM/MBS.1000-2/2(381)), Jonathan Parrett for help with dung beetle identification, Sui Peng Heon for translating the abstract into Malay, Matilda Brindle for proof-reading the manuscript and the South East Asian Rainforest Research Programme staff, who made this work possible: Unding Jami, Johnny Larenus, Amir, Anis, David, Didy, Dino, Joanni, Kiki, Loly, Mudin, Noy and Zul.

Logging and habitat fragmentation impact tropical forest ecosystems in numerous ways, perhaps the most striking of which is by altering the temperature, humidity, and light environment of the forest—its microclimate. Because local-scale microclimatic conditions directly influence the physiology, demography and behavior of most species, many of the impacts of land-use intensification on the biodiversity and ecosystem functioning of tropical forests have been attributed to changes in microclimate. However, the actual pathways through which altered microclimatic conditions reshape the ecology of these human-modified ecosystems remain largely unexplored. To bridge this knowledge gap, here we outline an agenda for future microclimate research in human-modified tropical ecosystems. We focus specifically on three main themes: the role of microclimate in shaping (i) species distributions, (ii) species interactions, and (iii) ecosystem functioning in tropical forests. In doing so we aim to highlight how a renewed focus on microclimate can help us not only better understand the ecology of human-modified tropical ecosystems, but also guide efforts to manage and protect them. Published version

The application of metabarcoding to environmental and invertebrate-derived DNA (eDNA and iDNA) is a new and increasingly applied method for monitoring biodiversity across a diverse range of habitats. This approach is particularly promising for sampling in the biodiverse humid tropics, where rapid land-use change for agriculture means there is a growing need to understand the conservation value of the remaining mosaic and degraded landscapes. Here we use iDNA from blood-feeding leeches (Haemadipsa picta) to assess differences in mammalian diversity across a gradient of forest degradation in Sabah, Malaysian Borneo. We screened 557 individual leeches for mammal DNA by targeting fragments of the 16S rRNA gene and detected 14 mammalian genera. We recorded lower mammal diversity in the most heavily degraded forest compared to higher quality twice logged forest. Although the accumulation curves of diversity estimates were comparable across these habitat types, diversity was higher in twice logged forest, with more taxa of conservation concern. In addition, our analysis revealed differences between the community recorded in the heavily logged forest and that of the twice logged forest. By revealing differences in mammal diversity across a human-modified tropical landscape, our study demonstrates the value of iDNA as a noninvasive biomonitoring approach in conservation assessments. Published version This study was funded by Natural Environment Research Council's Human Modified Tropical Forests (HTMF) Programme (NE/K016148/1), with additional support from a Study Abroad Studentship awarded to R.D. by The Leverhulme Trust (SAS- 2016-100). T.J. was supported by a UK NERC Independent Research Fellowship (Grant No. NE/S01537X/1).

Local-scale microclimatic conditions in forest understoreys play a key role in shaping the composition, diversity and function of these ecosystems. Consequently, understanding what drives variation in forest microclimate is critical to forecasting ecosystem responses to global change, particularly in the tropics where many species already operate close to their thermal limits and rapid land-use transformation is profoundly altering local environments. Yet our ability to characterize forest microclimate at ecologically meaningful scales remains limited, as understorey conditions cannot be directly measured from outside the canopy. To address this challenge, we established a network of microclimate sensors across a land-use intensity gradient spanning from old-growth forests to oil-palm plantations in Borneo. We then combined these observations with high-resolution airborne laser scanning data to characterize how topography and canopy structure shape variation in microclimate both locally and across the landscape. In the processes, we generated high-resolution microclimate surfaces spanning over 350 km2, which we used to explore the potential impacts of habitat degradation on forest regeneration under both current and future climate scenarios. We found that topography and vegetation structure were strong predictors of local microclimate, with elevation and terrain curvature primarily constraining daily mean temperatures and vapour pressure deficit (VPD), whereas canopy height had a clear dampening effect on microclimate extremes. This buffering effect was particularly pronounced on wind-exposed slopes but tended to saturate once canopy height exceeded 20 m—suggesting that despite intensive logging, secondary forests remain largely thermally buffered. Nonetheless, at a landscape-scale microclimate was highly heterogeneous, with maximum daily temperatures ranging between 24.2 and 37.2°C and VPD spanning two orders of magnitude. Based on this, we estimate that by the end of the century forest regeneration could be hampered in degraded secondary forests that characterize much of Borneo's lowlands if temperatures continue to rise following projected trends. © 2018 The Authors. Global Change Biology Published by John Wiley & Sons Ltd

Demand for tropical forest restoration has grown rapidly as the potential role of recovering secondary forests in sequestering carbon and enhancing biodiversity has been recognised. Active forest management is often prescribed to accelerate natural regeneration, but evidence for the efficacy of interventions is scarce for tropical forests. In this study we examine the hypothesis that the selective removal of abundant pioneers in the understory of recovering selectively logged forests can improve the composition of forest stands and accelerate succession. Four selective thinning treatments of increasing intensity were implemented in 8.75 ha compartments and replicated six times. Within each compartment, three monitoring plots were established and measured immediately after thinning and one year later to assess implementation of thinning treatments, growth and survival of stems, and changes in stand composition. Canopy openness was measured using hemispherical photography. Thinning treatments substantially reduced the abundance of pioneers, but there was only a slight increase in canopy openness (3.7–4.3%) relative to the control (1.8%) 8 months after implementation. Canopy openness increased dramatically across all treatments in the follow year due to the 2015–16 El Nino event and increased more in thinning treatments. Large (>10 cm dbh) and small (2–10 cm dbh) late-successional stems showed enhanced growth only in the low intensity thinning treatment, whereas the growth of small pioneer stems increased across the thinning intensity gradient. The cost of implementing thinning treatments was $US80 per ha or approximately 10% of the cost of planting treatments in the same forest. Our findings suggest that selective thinning of understory pioneer stems is a practical option for manipulating stand composition and potentially accelerating natural regeneration. Continued monitoring of the experiment should reveal the long-term impact and cost-effectiveness of treatments.

Logging, pervasive across the lowland tropics, affects millions of hectares of forest, yet its influence on nutrient cycling remains poorly understood. One hypothesis is that logging influences phosphorus (P) cycling, because this scarce nutrient is removed in extracted timber and eroded soil, leading to shifts in ecosystem functioning and community composition. However, testing this is challenging because P varies within landscapes as a function of geology, topography and climate. Superimposed upon these trends are compositional changes in logged forests, with species with more acquisitive traits, characterized by higher foliar P concentrations, more dominant. It is difficult to resolve these patterns using traditional field approaches alone. Here, we use airborne light detection and ranging‐guided hyperspectral imagery to map foliar nutrient (i.e. P, nitrogen [N]) concentrations, calibrated using field measured traits, over 400 km2 of northeastern Borneo, including a landscape‐level disturbance gradient spanning old‐growth to repeatedly logged forests. The maps reveal that canopy foliar P and N concentrations decrease with elevation. These relationships were not identified using traditional field measurements of leaf and soil nutrients. After controlling for topography, canopy foliar nutrient concentrations were lower in logged forest than in old‐growth areas, reflecting decreased nutrient availability. However, foliar nutrient concentrations and specific leaf area were greatest in relatively short patches in logged areas, reflecting a shift in composition to pioneer species with acquisitive traits. N:P ratio increased in logged forest, suggesting reduced soil P availability through disturbance. Through the first landscape scale assessment of how functional leaf traits change in response to logging, we find that differences from old‐growth forest become more pronounced as logged forests increase in stature over time, suggesting exacerbated phosphorus limitation as forests recover., Soil nutrients that come from rocks are critical for tree growth but rare in tropical forests. Logging removes these nutrients in quantities that could change plant life there. We mapped leaf nutrients in pristine and logged forests in Malaysia using cutting edge remote sensing combined with field measurements and found fewer nutrients in logged forests after controlling for other variables. Nutrients were most scarce in logged forests that had recovered with time after logging, raising concerns that they are changed permanently in terms of the species that live there and the nutrients available to them.

Data Availability Statement:: Airborne data are available via the CEDA archive (project code MA14/21); plot data is archived on forestplots (Lopez‐Gonzalez et al., 2011) (codes SEP‐03, 04, 05, 07, 08, 09, 10, 11, 12) and from the Figshare Repository: https://doi.org/10.6084/m9.figshare.8427998.v1. Acknowledgements: We are grateful to the Sabah Forestry Department and the Sabah Biodiversity Centre for allowing us to conduct our research in Sepilok as well as to the South East Asia Rainforest Research Partnership for the logistical support. This work was supported by a grant through the Human Modified Tropical Forests programme of NERC (NE/K016377/1) as well as a Cambridge NERC-DTP studentship. Resurvey of the field plots was supported by an ERC Advanced Grant (291585, T-FORCES) awarded to O.L.P. S.E.D.T was supported by the Joint Imperial-NUS PhD Scholarship. J.R. was supported by fellowships from the Natural Environment Research Council (NERC) (NE/I021179, NE/L011611/1). We thank members of the NERC Airborne Research Facility and Data Analysis Node for the collection and processing of the data (project code MA14/21). Data processing was aided by the NERCs JASMIN computing cluster and the Imperial College London computing facilities. We would also like to thank Felix May for his advice during the early stages of this study. The quality of this manuscript was greatly improved by the comments of Gabriel Arellano and two other anonymous Reviewers.

Blood‐feeding invertebrates are emerging model taxa in biodiversity assessments, both as indicators of mammal abundance and also as sources of mammal DNA for identification. Among these, terrestrial leeches arguably offer the greatest promise; they are abundant and widespread in the humid tropics, and their blood meals can be easily assayed to establish diet. Unfortunately, terrestrial leeches are understudied, with little known about their ecology and behavior. Such information is needed to evaluate their utility as ecological indicators and to account for potential sampling biases that might arise from habitat preferences. By combining occupancy modeling and thermal tolerance assays, we determined the factors affecting species occurrence in the related terrestrial brown (Haemadipsa sumatrana) and tiger leech (Haemadipsa picta), both of which are widespread in tropical forests in Southeast Asia. We sampled both species across a degraded forest landscape in Sabah, Borneo, in wet and dry seasons, associating occurrence with habitat‐level metrics. We found that, for both species, detection probability increased with canopy height regardless of season. Additionally, increased vegetation heterogeneity had a strong negative influence on brown leech occurrence in the dry season, implying an interaction between vegetation structure and climate. However, we found no difference in physiological thermal tolerance (CTMAX) between the two species. Finally, using a reduced dataset, we found a small improvement in brown leech model fit when including mammal abundance. Our results suggest that the presence of terrestrial leeches may act as useful ecological indicators of habitat quality and potentially mammalian abundance.

The conversion of forest to agriculture continues to contribute to the loss and fragmentation of remaining orang‐utan habitat. There are still few published estimates of orang‐utan densities in these heavily modified agricultural areas to inform range‐wide population assessments and conservation strategies. In addition, little is known about what landscape features promote orang‐utan habitat use. Using indirect nest count methods, we implemented surveys and estimated population densities of the Northeast Bornean orang‐utan (Pongo pygmaeus morio) across the continuous logged forest and forest remnants in a recently salvage‐logged area and oil palm plantations in Sabah, Malaysian Borneo. We then assessed the influence of landscape features and forest structural metrics obtained from LiDAR data on estimates of orang‐utan density. Recent salvage logging appeared to have a little short‐term effect on orang‐utan density (2.35 ind/km 2), which remained similar to recovering logged forest nearby (2.32 ind/km 2). Orang‐utans were also present in remnant forest patches in oil palm plantations, but at significantly lower numbers (0.82 ind/km 2) than nearby logged forest and salvage‐logged areas. Densities were strongly influenced by variation in canopy height but were not associated with other potential covariates. Our findings suggest that orang‐utans currently exist, at least in the short‐term, within human‐modified landscapes, providing that remnant forest patches remain. We urge greater recognition of the role that these degraded habitats can have in supporting orang‐utan populations, and that future range‐wide analyses and conservation strategies better incorporate data from human‐modified landscapes., Research Highlights Forest remnants within oil palm estates can support substantial orang‐utan numbers, although at reduced density.Orang‐utan density is more influenced by forest structure than isolation from large forested areas in human‐modified landscapes of Borneo.

Restoration of degraded tropical forests can enhance ecosystem service provisioning, improve habitat quality for tropical forest biota and generate income from timber and NTFPs. In Indonesia alone, an estimated 25 million ha of former logging concessions are without current management, representing a huge opportunity for biodiversity conservation. However, currently such forests are typically converted to plantations. Realising the restoration potential of these forests will require viable business models that couple restoration goals with income generation. Unfortunately, understanding of natural succession trajectories and cost-effectiveness of restoration interventions remains poor. We present an overview of research, including three planned experiments designed to test the economic viability of large-scale restoration treatments, in a former logging concession at Harapan Rainforest (98,455 ha), Indonesia. These experiments will address the following questions: (1) Can the selective removal of pioneer trees, including an invasive species, be used to accelerate succession; (2) how does the functional diversity of the planted matrix affect growth and survival of a high value target species; and (3) how does seed density affect recruitment success in direct seeding treatments? Treatments will be applied to large compartments (4~8 ha) to reduce edge effects and simplify management. Monitoring plots (20 × 20 m × 5 reps) within each compartment will be used to assess silvicultural responses, while changes in biodiversity and carbon storage will be monitored at the compartment level. The large spatial scale and high replication of the treatments will establish an experimental platform that will inform many different aspects of tropical forest ecology.

Most general circulation models predict that most tropical forests will experience lower and less frequent rainfall in future as a result of climate change, which may reduce the capacity of fungal pathogens to drive density-dependent tree mortality. This is potentially significant because fungal pathogens are thought to play a key role in promoting and structuring plant diversity in tropical forests through the Janzen–Connell mechanism. Therefore, we hypothesize that the drying of tropical forests will negatively impact species coexistence. To test one prediction of this hypothesis, we imposed experimental watering regimes on the seedlings of a tropical tree, Pleradenophora longicuspis, and measured mortality induced by fungal pathogens under shade house conditions. The frequency of watering had a strong impact on survival. Seedlings watered daily experienced significantly higher mortality than those watered every three or every six days, while increasing the volume of water applied also led to increased mortality, although this relationship was less pronounced. These results suggest that the capacity of fungal pathogens to drive density-dependent mortality may be reduced in drier climates and when rainfall is less frequent, with potential implications for the diversity enhancing Janzen–Connell mechanism.

The Janzen-Connell hypothesis is a leading explanation for plant-species diversity in tropical forests. It suggests that specialized natural enemies decrease offspring survival at high densities beneath parents, giving locally rarer species an advantage. This mechanism, in its original form, assumes that density dependence is overcompensating: mortality must be disproportionately high at the highest densities, with few offspring recruiting below their parents. We tested this assumption using parallel shadehouse and field density-series experiments on seedlings of a tropical tree, Pleradenophora longicuspis. We found strong, overcompensating mortality driven by fungal pathogens, causing 90% (shadehouse) or 100% (field) mortality within 4 weeks of germination, and generating a negative relationship between initial and final seedling densities. Fungicide treatment led to much lower, density-independent, mortality. Overcompensating mortality was extremely rapid, and could be missed without detailed monitoring. Such dynamics may prevent dead trees from being replaced by conspecifics, promoting coexistence as envisioned by the Janzen-Connell hypothesis.

In recent months, an environmental disaster with global consequences has been unfolding in Southeast Asia. Unusually extensive and persistent fires in Indonesia have razed thousands of square kilometers of tropical forest and peatland, casting a toxic cloud of smoky haze over the region and dumping billions of tons of CO2 into the atmosphere. Similar fires have occurred annually for decades, but strong El Nino conditions have made this year's the worst since 1997. This article is protected by copyright. All rights reserved. Language: en

Most general circulation models predict that most tropical forests will experience lower and less frequent rainfall in future as a result of climate change, which may reduce the capacity of fungal pathogens to drive density-dependent tree mortality. This is potentially significant because fungal pathogens are thought to play a key role in promoting and structuring plant diversity in tropical forests through the Janzen–Connell mechanism. Therefore, we hypothesize that the drying of tropical forests will negatively impact species coexistence. To test one prediction of this hypothesis, we imposed experimental watering regimes on the seedlings of a tropical tree, Pleradenophora longicuspis, and measured mortality induced by fungal pathogens under shade house conditions. The frequency of watering had a strong impact on survival. Seedlings watered daily experienced significantly higher mortality than those watered every three or every six days, while increasing the volume of water applied also led to increased mortality, although this relationship was less pronounced. These results suggest that the capacity of fungal pathogens to drive density-dependent mortality may be reduced in drier climates and when rainfall is less frequent, with potential implications for the diversity enhancing Janzen–Connell mechanism.

The Janzen-Connell hypothesis is a leading explanation for plant-species diversity in tropical forests. It suggests that specialized natural enemies decrease offspring survival at high densities beneath parents, giving locally rarer species an advantage. This mechanism, in its original form, assumes that density dependence is overcompensating: mortality must be disproportionately high at the highest densities, with few offspring recruiting below their parents. We tested this assumption using parallel shadehouse and field density-series experiments on seedlings of a tropical tree, Pleradenophora longicuspis. We found strong, overcompensating mortality driven by fungal pathogens, causing 90% (shadehouse) or 100% (field) mortality within 4 weeks of germination, and generating a negative relationship between initial and final seedling densities. Fungicide treatment led to much lower, density-independent, mortality. Overcompensating mortality was extremely rapid, and could be missed without detailed monitoring. Such dynamics may prevent dead trees from being replaced by conspecifics, promoting coexistence as envisioned by the Janzen-Connell hypothesis.

Developing a robust algorithm for automatic individual tree crown (ITC) detection from airborne laser scanning (ALS) data sets is important for tracking the responses of trees to anthropogenic change. Such approaches allow the size, growth, and mortality of individual trees to be measured, enabling forest carbon stocks and dynamics to be tracked and understood. Many algorithms exist for structurally simple forests, including coniferous forests and plantations. Finding a robust solution for structurally complex, species-rich tropical forests remains a challenge; existing segmentation algorithms often perform less well than simple area-based approaches when estimating plot-level biomass. Here, we describe a multiclass graph cut (MCGC) approach to tree crown delineation. This uses local 3D geometry and density information, alongside knowledge of crown allometries, to segment ITCs from airborne light detection and ranging point clouds. Our approach robustly identifies trees in the top and intermediate layers of the canopy, but cannot recognize small trees. From these 3D crowns, we are able to measure individual tree biomass. Comparing these estimates with those from permanent inventory plots, our algorithm can produce robust estimates of hectare-scale carbon density, demonstrating the power of ITC approaches in monitoring forests. The flexibility of our method to add additional dimensions of information, such as spectral reflectance, make this approach an obvious avenue for future development and extension to other sources of 3D data, such as structure from motion data sets.

Artificial ponds and swamps commonly occur throughout logged forests of Southeast Asia in association with roads. Dammed streams accumulate water, which floods the surrounding forest creating ponds and swamps, which are slow to recover to a condition that maximises their conservation value. In particular, ponds remain relatively anoxic and the self-recovery of swamps is slow due to delayed colonisation by swamp tolerant species. The Harapan Rainforest ecosystem restoration concession in Sumatra is a clear example of this issue. Within the 100,000 ha of lowland rain forest, four watersheds are present with more than 750 km of rivers and their tributaries. Across this area more than 175 artificial ponds and swamps have been created through the construction of the road network over the past 30–40 years. Despite the artificial nature of their creation there is a significant conservation value in improving the alluvial swamps due to the significant decline in extent of this habitat across Southeast Asia. However, tropical forest streams too have been widely degraded and are a conservation priority due to the uniqueness of their associated biodiversity. As such, we propose the restoration of these habitats through the drainage of ponds to improve stream flow and connectivity and the establishment of swamp specialist tree species. An approach for identifying sites suitable for restoration is presented focusing on making comparisons with ‘model’ streams and swamps. Restoration techniques are proposed, including a list of swamp species suitable for planting trials at swamp sites and techniques for the suppression of disturbance responsive species, such as bamboos, ferns and lianas. We stress that pond restoration activities in general should always include unmanaged control ponds to enable the measurement of the additional benefit of restoration activities beyond that of natural recovery.