101 results on '"Tolonen, T."'
Search Results
2. Prostate cancer evolution from multilineage primary to single lineage metastases with implications for liquid biopsy
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Woodcock, D. J., Riabchenko, E., Taavitsainen, S., Kankainen, M., Gundem, G., Brewer, D. S., Ellonen, P., Lepistö, M., Golubeva, Y. A., Warner, A. C., Tolonen, T., Jasu, J., Isaacs, W. B., Emmert-Buck, M. R., Nykter, M., Visakorpi, T., Bova, G. S., and Wedge, D. C.
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- 2020
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3. ”Ei niin ikävää asiaa joka ei tien päällä paranisi”:moottoripyöräilyn merkitys suomalaiselle naisharrastajalle
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Tolonen, T. (Tiina) and Tolonen, T. (Tiina)
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Tiivistelmä. Tämä kulttuuriantropologian pro gradu -tutkielma käsittelee suomalaisnaisten moottoripyöräharrastuksen lähtökohtia ja sen tuomia merkityksiä heidän elämälleen. Tavoitteeni on selvittää miksi naiset haluavat aloittaa sukupuolelleen epätyypillisen harrastuksen ja millä tavalla he kuvaavat sen vaikutuksia itselleen. Tutkielmani aineisto koostuu kyselytutkimuksesta, johon vastasi 501 suomalaisnaista ikähaarukassa 18–74 vuotta, viidestä haastattelusta sekä keräämästäni media-aineistosta, johon sisältyy lehtiartikkeleita sekä arkistoaineistoa. Kyselytutkimus oli avoinna 14.–31.3.2022 ja haastattelut tehtiin 3.9.–20.10.2022 välisenä aikana. Tutkielmaa varten tehtiin myös osallistuvaa havainnointia ajokauden 2022 kuluessa osallistumalla kahteen motoristien vapaamuotoiseen kokoontumiseen sekä muiden spontaanien ajomatkojen aikana. Tutkielman teoreettinen viitekehys muodostuu Clifford Geertzin symboleihin ja merkitysten rakentumiseen liittyvän teorian sekä Victor Turnerin Arnold van Gennepiltä omaksuman liminaliteetin käsitteiden ympärille. Viitekehyksen rakentamisessa on hyödynnetty myös feminististä antropologiaa, sillä sukupuolittuminen sekä sukupuoliroolit liittyvät vahvasti miestapaiseksi mielletyn harrastuksen tutkimiseen. Tutkielmani perusteella moottoripyöräilyä harrastavat suomalaisnaiset ovat usein jo lapsuudessaan saaneet kipinän harrastuksen aloittamiseksi, mutta sen aloittaminen lykkääntyy siihen asti että se on taloudellisesti mahdollista tai sopii muuten naisen elämäntilanteeseen. Monelle tutkimuksessani mukana olleelle naiselle moottoripyöräilyharrastuksen aloittaminen on ollut ikiaikainen haave josta on haluttu tehdä totta. Moottoripyöräilyä harrastavat naiset eivät pidä harrastuksen sukupuolittamisesta. He kokevat ensisijaisesti olevansa motoristeja siinä kuin miehetkin. Naiset suhtautuvat harrastukseensa vakavasti, ja ovat valmiita käyttämään siihen rahaa ja aikaa. Harrastuksen aloittamiseksi on voitu joutua näkemään monenlaista vaivaa ja siihe
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- 2023
4. Breast density and the likelihood of malignant MRI-detected lesions in women diagnosed with breast cancer
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Sassi, A. (Antti), Salminen, A. (Annukka), Jukkola, A. (Arja), Tervo, M. (Maija), Mäenpää, N. (Niina), Turtiainen, S. (Saara), Tiainen, L. (Leena), Liimatainen, T. (Timo), Tolonen, T. (Teemu), Huhtala, H. (Heini), Rinta-Kiikka, I. (Irina), Arponen, O. (Otso), Sassi, A. (Antti), Salminen, A. (Annukka), Jukkola, A. (Arja), Tervo, M. (Maija), Mäenpää, N. (Niina), Turtiainen, S. (Saara), Tiainen, L. (Leena), Liimatainen, T. (Timo), Tolonen, T. (Teemu), Huhtala, H. (Heini), Rinta-Kiikka, I. (Irina), and Arponen, O. (Otso)
- Abstract
Objectives: To assess whether mammographic breast density in women diagnosed with breast cancer correlates with the total number of incidental magnetic resonance imaging (MRI)-detected lesions and the likelihood of the lesions being malignant. Methods: Patients diagnosed with breast cancer meeting the EUSOBI and EUSOMA criteria for preoperative breast MRI routinely undergo mammography and ultrasound before MRI at our institution. Incidental suspicious breast lesions detected in MRI are biopsied. We included patients diagnosed with invasive breast cancers between 2014 and 2019 who underwent preoperative breast MRI. One reader retrospectively determined breast density categories according to the 5th edition of the BI-RADS lexicon. Results: Of 946 patients with 973 malignant primary breast tumors, 166 (17.5%) had a total of 175 (18.0%) incidental MRI-detected lesions (82 (46.9%) malignant and 93 (53.1%) benign). High breast density according to BI-RADS was associated with higher incidence of all incidental enhancing lesions in preoperative breast MRIs: 2.66 (95% confidence interval: 1.03–6.86) higher for BI-RADS density category B, 2.68 (1.04–6.92) for category C, and 3.67 (1.36–9.93) for category D compared to category A (p < 0.05). However, high breast density did not predict higher incidence of malignant incidental lesions (p = 0.741). Incidental MRI-detected lesions in the contralateral breast were more likely benign (p < 0.001): 18 (27.3%)/48 (72.7%) vs. 64 (58.7%)/45 (41.3%) malignant/benign incidental lesions in contralateral vs. ipsilateral breasts. Conclusion: Women diagnosed with breast cancer who have dense breasts have more incidental MRI-detected lesions, but higher breast density does not translate to increased likelihood of malignant incidental lesions. Clinical relevance statement: Dense breasts should not be considered as an indication for preoperative breast MRI in women diagnosed with breast cancer. Key points: • The role of preoperati
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- 2023
5. P182 Factors Influencing Breast Cancer Resection Volumes and their Impact on Treatment Outcome: Multi-center Prospective Study (FIBRATIO) – Study Protocol and Preliminary Results
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Karhunen-Enckell, U., primary, Salminen, A., additional, Tolonen, T., additional, Sarantola, H., additional, Oksala, N., additional, and Roine, A., additional
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- 2023
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6. Evaluation of the probiotic properties of the novel kombucha drinks
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Shvetsova, A. (Antonina), Tolonen, T. (Tiina), Niskanen, T. (Tuomas), Kilpeläinen, P. (Pekka), Virtanen, V. (Vesa), Shvetsova, A. (Antonina), Tolonen, T. (Tiina), Niskanen, T. (Tuomas), Kilpeläinen, P. (Pekka), and Virtanen, V. (Vesa)
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- 2022
7. Toiveita ja tulevaisuuksia:nuorten koulutukselliset jatkumot ja säröt toisella asteella
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Tolonen, T., Kaisa Vehkalahti, and Aapola-Kari, S.
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- 2021
8. Toiveita ja tulevaisuuksia:nuorten koulutukselliset jatkumot ja säröt toisella asteella
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Tolonen, T. (Tarja), Vehkalahti, K. (Kaisa), Aapola-Kari, S. (Sinikka), Tolonen, T. (Tarja), Vehkalahti, K. (Kaisa), and Aapola-Kari, S. (Sinikka)
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- 2021
9. Single-cell ATAC and RNA sequencing reveal pre-existing and persistent subpopulations of cells associated with relapse of prostate cancer
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Taavitsainen, S, primary, Engedal, N, additional, Cao, S, additional, Handle, F, additional, Erickson, A, additional, Prekovic, S, additional, Wetterskog, D, additional, Tolonen, T, additional, Vuorinen, EM, additional, Kiviaho, A, additional, Nätkin, R, additional, Häkkinen, T, additional, Devlies, W, additional, Henttinen, S, additional, Kaarijärvi, R, additional, Lahnalampi, M, additional, Kaljunen, H, additional, Nowakowska, K, additional, Syvälä, H, additional, Bläuer, M, additional, Cremaschi, P, additional, Claessens, F, additional, Visakorpi, T, additional, Tammela, TLJ, additional, Murtola, T, additional, Granberg, KJ, additional, Lamb, AD, additional, Ketola, K, additional, Mills, IG, additional, Attard, G, additional, Wang, W, additional, Nykter, M, additional, and Urbanucci, A, additional
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- 2021
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10. Taiteellako hyvinvointia työpaikoille?
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Tolonen, T. (Tiina)
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- 2020
11. Theseus-kyselyn tulosten mukaan amkit melko tyytyväisiä Theseus-uudistukseen:'Tämä oli yllättävän hyvä tulos'
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Tolonen, T. (Tiina), Nyqvist, A. (Antti), and Marjamaa, M. (Minna)
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- 2020
12. Survey of microbes in industrial-scale second-generation bioethanol production for better process knowledge and operation
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Aho, V. T. (Velma T. E.), Tolonen, T. (Tiina), Haverinen, J. (Jasmiina), Jaakkola, M. (Mari), Paulin, L. (Lars), Auvinen, P. (Petri), Laine, M. M. (M. Minna), Aho, V. T. (Velma T. E.), Tolonen, T. (Tiina), Haverinen, J. (Jasmiina), Jaakkola, M. (Mari), Paulin, L. (Lars), Auvinen, P. (Petri), and Laine, M. M. (M. Minna)
- Abstract
The microbes present in bioethanol production processes have been previously studied in laboratory-scale experiments, but there is a lack of information on full-scale industrial processes. In this study, the microbial communities of three industrial bioethanol production processes were characterized using several methods. The samples originated from second-generation bioethanol plants that produce fuel ethanol from biowaste, food industry side streams, or sawdust. Amplicon sequencing targeting bacteria, archaea, and fungi was used to explore the microbes present in biofuel production and anaerobic digestion of wastewater and sludge. Biofilm-forming lactic acid bacteria and wild yeasts were identified in fermentation samples of a full-scale plant that uses biowaste as feedstock. During the 20-month monitoring period, the anaerobic digester adapted to the bioethanol process waste with a shift in methanogen profile indicating acclimatization to high concentrations of ammonia. Amplicon sequencing does not specifically target living microbes. The same is true for indirect parameters, such as low pH, metabolites, or genes of lactic acid bacteria. Since rapid identification of living microbes would be indispensable for process management, a commercial method was tested that detects them by measuring the rRNA of selected microbial groups. Small-scale testing indicated that the method gives results comparable with plate counts and microscopic counting, especially for bacterial quantification. The applicability of the method was verified in an industrial bioethanol plant, inspecting the clean-in-place process quality and detecting viability during yeast separation. The results supported it as a fast and promising tool for monitoring microbes throughout industrial bioethanol processes.
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- 2020
13. Sairaanhoitajien kokemukset lasten kotisairaalassa tarvittavasta osaamisesta
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Halkola, H. (Henna), Kaakinen, P. (Pirjo), Heino-Tolonen, T. (Tarja), Miettinen, S. (Seija), Siivonen, T. (Tarja), and Kääriäinen, M. (Maria)
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perhehoitotyö ,Nurse ,kotisairaanhoito ,competence ,home health nursing ,sairaanhoitajat ,home care services ,kotisairaalat ,children ,osaaminen ,family nursing ,kotisairaala ,sairaanhoitaja ,Artikkelit ,lapset - Abstract
The aim of this study was to describe nurses’ experiences of competence required to work in the children’s home health care. The data was collected by theme interviewing the nurses’ (N=12) who worked at children’s home health care in Finnish university hospitals in September 2016. The data was analyzed with inductive content analysis. Nurses’ in children’s home health care need the competence including the knowledge and skills in pediatric and family health care, interaction and technical competence as well as the personal characteristics. The working environment, working alone and lack of resources were the challenge to improve nurses’ competence. The nurses’ competence in children home health care is consisted of the competence based on the nursing education and the competence that the working environment requires. Work and life experience helps nurses to work more comprehensive in children’s health care. The evaluation of the competence should be systematic and congruent to ensure the nurses’ competence and quality of care nationally. The results of this study can be used for the knowledge management, nurses’ mentoring in the children’s home health care as well as the development of the nursing basic and continuing education. Tiivistelmä Tutkimuksen tarkoituksena oli kuvailla sairaanhoitajien kokemuksia lasten kotisairaalassa tarvittavasta osaamisesta. Tutkimusaineisto kerättiin teemahaastattelemalla Suomen yliopistollisten sairaaloiden lasten kotisairaalan sairaanhoitajat (N=12) syyskuussa 2016. Aineisto analysoitiin induktiivisella sisällönanalyysillä. Sairaanhoitajat tarvitsevat lasten kotisairaalassa lasten ja nuorten hoitotyön osaamista, vuorovaikutusosaamista, teknistä osaamista sekä yksilöllisiä ominaisuuksia. Perhehoitotyön näkökulma korostui lasten ja nuorten hoitotyön osaamisessa sekä vuorovaikutusosaamisessa. Teknisen osaamisen osalta nousi erityisesti autolla ajotaidot ja työn suunnitelmallisuus. Osaamisen kehittämisen haasteita sairaanhoitajat kohtasivat työympäristön, yksintyöskentelyn ja resurssien osalta. Sairaanhoitajien osaaminen lasten kotisairaalassa koostuu peruskoulutuksen antamista ja työympäristön edellyttämästä osaamista. Sairaanhoitajien osaamista voitaisiin tukea lisäämällä aikaresursseja ja lasten kotisairaalan toimintaan liittyviin koulutuksiin osallistumista kansallisesti ja kansainvälisesti, jolloin mahdollistettaisiin näyttöön perustuva toiminta osana sairaanhoitajien osaamista. Osaamisen arviointi tulisi olla systemaattista ja yhtenevää, jotta voitaisiin varmistaa sairaanhoitajien osaaminen ja turvata laadukas kotisairaalahoito lapsille valtakunnallisesti. Tutkimustuloksia voidaan hyödyntää lasten kotisairaalan sairaanhoitajien osaamisen johtamisessa, perehdytyksessä sekä perus- ja täydennyskoulutuksen kehittämisessä.
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- 2018
14. Optimized JPEG 2000 compression for efficient storage of histopathological whole-slide images
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Helin, H. (Henrik), Tolonen, T. (Teemu), Ylinen, O. (Onni), Tolonen, P. (Petteri), Näpänkangas, J. (Juha), Isola, J. (Jorma), Helin, H. (Henrik), Tolonen, T. (Teemu), Ylinen, O. (Onni), Tolonen, P. (Petteri), Näpänkangas, J. (Juha), and Isola, J. (Jorma)
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Background: Whole slide images (WSIs, digitized histopathology glass slides) are large data files whose long-term storage remains a significant cost for pathology departments. Currently used WSI formats are based on lossy image compression alogrithms, either using JPEG or its more efficient successor JPEG 2000. While the advantages of the JPEG 2000 algorithm (JP2) are commonly recognized, its compression parameters have not been fully optimized for pathology WSIs. Methods: We defined an optimized parametrization for JPEG 2000 image compression, designated JP2-WSI, to be used specifically with histopathological WSIs. Our parametrization is based on allowing a very high degree of compression on the background part of the WSI while using a conventional amount of compression on the tissue-containing part of the image, resulting in high overall compression ratios. Results: When comparing the compression power of JP2-WSI to the commonly used fixed 35:1 compression ratio JPEG 2000 and the default image formats of proprietary Aperio, Hamamatsu, and 3DHISTECH scanners, JP2-WSI produced the smallest file sizes and highest overall compression ratios for all 17 slides tested. The image quality, as judged by visual inspection and peak signal-to-noise ratio (PSNR) measurements, was equal to or better than the compared image formats. The average file size by JP2-WSI amounted to 15, 9, and 16 percent, respectively, of the file sizes of the three commercial scanner vendors’ proprietary file formats (3DHISTECH MRXS, Aperio SVS, and Hamamatsu NDPI). In comparison to the commonly used 35:1 compressed JPEG 2000, JP2-WSI was three times more efficient. Conclusions: JP2-WSI allows very efficient and cost-effective data compression for whole slide images without loss of image information required for histopathological diagnosis.
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- 2018
15. Chemical composition of the water extract of young spruce (Picea abies (L.) Karst) shoots
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Tolonen, T. (Tiina), von Wright, A. (Atte), and Virtanen, V. (Vesa)
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Lactobacillus ,Spruce shoot ,fungi ,food and beverages ,chemical composition ,phenolic compounds ,water extract - Abstract
Abstrct Young shoots of spruce are a natural resource that have been used as a remedy or a food ingredient for a long time. Although, it cannot be harvested from the forest without the permission of the landowner, it could be exploited more. Almost third of Finnish forests resources is spruce, forming enormous reservoir for the spruce shoots and more refined spruce shoot products. Lactic acid bacteria is one of the most, if not the most, used group of microbes in the food industry. In our earlier growth experiments the water extract from young spruce shoots had an enhancing effects in the growth of some strains of Lactobacillus species. Particularly, Lactobacillus plantarum grew better and had shorter lag time, when growth medium contained spruce shoot extract. To apprehend better, what could generate an effect seen with the growth of the bacteria, we analyzed the chemical composition of the water extract of the spruce shoots. For the evaluation of the chemical composition of the spruce shoot water extract chromatographic, capillary electrophoretic and spectrophotometric methods were used. Sugars and sugar alcohols were measured with the capillary electrophoresis (CE), glucose and inositol respectively being of most abundant. Also non phenolic acids and inorganic cations were analyzed with the CE. Quinic acid was the main non phenolic acid detected, and of the inorganic cations K, Mg, Ca, Ni, Zn and ammonium were recognized from the extract. Antioxidant capacity (reduction potential) of 772mg GAE/L was measured for the extract using spectrophotometric method of Folin-Ciocalteu. To analyze phenolic compounds, chromatographic methods developed for the detection of catechins, proantocyanidin, phenolic acids and stilbenoids were utilized. Main catechins in the water extract were the catechin and epicatechin. Type B dimers were the most apparent of the proantocyanidins. The extract contained several benzoic and cinnamic acid derivatives, but protocatechuic acid and p-coumaric acid were the most apparent ones. Of the stilbenoids trans and cis forms of piceid, sugar derivative of resveratrol, and astringin were the most abundant. Future research will focus on, whether Lactobacillus bacteria will metabolize one or more of these detected compounds found when in growth with the extract.
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- 2017
16. Hematoxylin Counterstain To Simplify Whole Slide Scanning Of Immunofluorescence Stains
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Isola, J., Tolonen, T., Tolonen, P., and Ylinen, O.
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lcsh:R5-920 ,lcsh:Medical technology ,lcsh:R855-855.5 ,lcsh:R858-859.7 ,lcsh:Medicine (General) ,lcsh:Computer applications to medicine. Medical informatics - Abstract
Introduction/ Background Whole slide scanning of immunofluorescence (IF) stained slides is a well-recognized need, because fluorescence signal fading makes slides non-archivable. Technically scanning of IF has remained difficult, because tissue finding and autofocus operations are slow and prone to errors under epifluorescence illumination. Aims To simplify and to make IF scans more reliable, we started to look for counterstains that are compatible with IF and that can be scanned under brightfield illumination first. Methods Of the many alternative counterstains tested, light hematoxylin (H) proved the best counterstain for IF (with or without DAPI). Hematoxylin staining allowed the scanner (OIT Turboscanner) to perform rapid and accurate tissue finding and to define autofocus points, yet it did not increase background autofluorescence or decrease true fluorescence signal during subsequent scanning of IF under epifluorescence illumination. By using Cy2 (green) and Cy3 (orange) as secondary antibody fluorochromes (Jackson Immunotech), we were able to use standard xylene-based DPX mounting medium without observing significant fluorescence signal fading. Results As a result, IF scans of H counterstained slides could not be distinguished from those stained without hematoxylin counterstaining. As a bonus, the two scans (IF and H) could be viewed on the viewer screen side-by-side, or by gradually blending the two layers with each other. Both viewing modes were found useful in diagnostic dermatopathology when analyzing e.g. blistering skin lesions. A brightfield-IF scanning combination was also found useful in double immunostains, where cellular co-localization makes use of two precipitating (chromogenic) markers unreliable. The peroxidase IHC-hematoxylin-IF stain was exemplified with Ki-67 and pan-cytokeratin in breast cancer samples. The brightfield WSI of Ki-67 with H counterstain is an easily evaluable chromogenic DAB stain, but the image analysis software (ImmunoRatio2, embedded in the WSI viewer) utilizes the hidden pan-cytokeratin IF to create a cancer mask to exclude counting of non-epithelial stromal and lymphoid cells in the Ki-67 labeling index counting. Together these results demonstrate that a minor modification in the staining protocol (using hematoxylin instead of or in parallel to DAPI as counterstain) provides a significant help for whole slide scanning of immunofluorescence stains. Some scanners may need to be re-programmed to allow scanning of brightfield and epifluorescence automatically in sequence., Diagnostic Pathology, Vol 1 No 8 (2016): 13. European Congress on Digital Pathology
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- 2016
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17. Optimizing Optical And Digital Resolution For Brightfield Whole Slide Scanning
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Isola, J., Ylinen, O., Tolonen, T., and Tolonen, P.
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lcsh:R5-920 ,lcsh:Medical technology ,lcsh:R855-855.5 ,lcsh:R858-859.7 ,lcsh:Medicine (General) ,lcsh:Computer applications to medicine. Medical informatics - Abstract
Introduction/ Background Whole slide imaging lacks standards for defining image resolution. Scanner vendors usually describe the image resolution according to the microscope objectives “20X” or “40X”. This has caused confusion, since scanning with a 20X objective lens may mean spatial resolution 0.25 to 0.5 microns per pixel, due to variable pixel size of the camera sensor and/or use of a magnifying relay lens. Aims Our aim was to compare image quality obtained by two digital cameras (with pixel sizes 5.5um and 3.1um conbined with 10X, 20X, and 40X Plan Apo objective lenses. Methods As for image quality readouts we used standardized resolution charts, Peak-Signal-To-Noise Ratio, and evaluation by three pathologists who ranked the images by their “visually lossless quality”, when displayed with a 4K computer monitor. Lossless JPEG2000 was used as a reference. Results The differences in scanned image quality were significant. The image quality achieved with a CCD camera with 3.1 um pixels was superior in all tests. It was noteworthy that the camera with 3.1 um pixels (Lumenera 1265R) gave visually as good diagnostic image quality with 10X lens (0.31 um/pixel) as did the 5.5 um pixel camera (Lumenera LT425) with 20X lens (0.28 um/pixel). This gives a significant speed advantage in scanning of standard H&E slides, because the scanner needs to capture only one 10X field instead of four 20X fields. In higher resolution scanning tasks, such as cytology and in situ hybridization, we found 3.1 um pixel Lumenera 1265R camera and Plan-Apo 20X lens to give diagnostically satisfactory scanning results. We anticipate that in the future scanners will be equipped with cameras having small pixel size sensors (typically 2-3microns). This matches with the optical resolution of Plan-Apo objective lenses. Compared to current scanners, significant image quality and/or scanning speed improvement can be gained by upgrading the camera., Diagnostic Pathology, Vol 1 No 8 (2016): 13. European Congress on Digital Pathology
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- 2016
18. Atorvastatin before prostatectomy and prostate cancer - a randomized, double-blind, placebo controlled clinical trial
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Murtola, T., primary, Riikonen, J., additional, Syvälä, H., additional, Tolonen, T., additional, Koskimäki, J., additional, Pakarainen, T., additional, Kaipia, A., additional, Isotalo, T., additional, Kujala, P., additional, and Tammela, T., additional
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- 2017
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19. Development of a fermented quinoa-based beverage
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Ludena Urquizo, F. E. (Fanny Emma), García Torres, S. M. (Silvia Melissa), Tolonen, T. (Tiina), Jaakkola, M. (Mari), Pena-Niebuhr, M. G. (Maria Grazzia), von Wright, A. (Atte), Repo-Carrasco-Valencia, R. (Ritva), Korhonen, H. (Hannu), Plumed-Ferrer, C. (Carme), Ludena Urquizo, F. E. (Fanny Emma), García Torres, S. M. (Silvia Melissa), Tolonen, T. (Tiina), Jaakkola, M. (Mari), Pena-Niebuhr, M. G. (Maria Grazzia), von Wright, A. (Atte), Repo-Carrasco-Valencia, R. (Ritva), Korhonen, H. (Hannu), and Plumed-Ferrer, C. (Carme)
- Abstract
Quinoa is a crop that originated from the Andes. It has high nutritional value, outstanding agro-ecological adaptability, and low water requirements. Quinoa is an excellent crop alternative to help overcome food shortages, and it can also have a role in the prevention of developed world lifestyle diseases, such as type-2 diabetes, cardiovascular diseases, osteoporosis, inflammatory and autoimmune diseases, etc. In order to expand the traditional uses of quinoa and to provide new, healthier and more nutritious food products, a fermented quinoa-based beverage was developed. Two quinoa varieties (Rosada de Huancayo and Pasankalla) were studied. The fermentation process, viscosity, acidity, and metabolic activity during the preparation and storage of the drink were monitored, as well as the preliminary organoleptic acceptability of the product. The drink had viable and stable microbiota during the storage time and the fermentation proved to be mostly homolactic. Both quinoa varieties were suitable as base for fermented products; Pasankalla, however, has the advantage due to higher protein content, lower saponin concentration, and lower loss of viscosity during the fermentation process. These results suggest that the differences between quinoa varieties may have substantial effects on food processes and on the properties of final products. This is a factor that should be taken into account when planning novel products based on this grain.
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- 2017
20. 1074 Microseminoprotein-beta expression in different stages of prostate cancer
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Sjöblom, L, primary, Saramäki, O., additional, Annala, M., additional, Leinonen, K., additional, Nättinen, J., additional, Tolonen, T., additional, Wahlfors, T., additional, Nykter, M., additional, Bova, G., additional, Schleutker, J., additional, Tammela, T., additional, Lilja, H., additional, and Visakorpi, T., additional
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- 2016
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21. Phenolic acid composition, antiatherogenic and anticancer potential of honeys derived from various regions in Greece
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Spilioti, E. Jaakkola, M. Tolonen, T. Lipponen, M. Virtanen, V. Chinou, I. Kassi, E. Karabournioti, S. Moutsatsou, P.
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food and beverages - Abstract
The phenolic acid profile of honey depends greatly on its botanical and geographical origin. In this study, we carried out a quantitative analysis of phenolic acids in the ethyl acetate extract of 12 honeys collected from various regions in Greece. Our findings indicate that protocatechuic acid, p-hydroxybenzoic acid, vanillic acid, caffeic acid and p-coumaric acid are the major phenolic acids of the honeys examined. Conifer tree honey (from pine and fir) contained significantly higher concentrations of protocatechuic and caffeic acid (mean: 6640 and 397 μg/kg honey respectively) than thyme and citrus honey (mean of protocatechuic and caffeic acid: 437.6 and 116 μg/kg honey respectively). p-Hydroxybenzoic acid was the dominant compound in thyme honeys (mean: 1252.5 μg/kg honey). We further examined the antioxidant potential (ORAC assay) of the extracts, their ability to influence viability of prostate cancer (PC-3) and breast cancer (MCF-7) cells as well as their lowering effect on TNF- α-induced adhesion molecule expression in endothelial cells (HAEC). ORAC values of Greek honeys ranged from 415 to 2129 μmol Trolox equivalent/kg honey and correlated significantly with their content in protocatechuic acid (p
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- 2014
22. Bioactivity of Greek honey extracts on breast cancer (MCF-7), prostate cancer (PC-3) and endometrial cancer (Ishikawa) cells: Profile analysis of extracts
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Tsiapara, A.V. Jaakkola, M. Chinou, I. Graikou, K. Tolonen, T. Virtanen, V. Moutsatsou, P.
- Subjects
animal structures ,digestive, oral, and skin physiology ,fungi ,behavior and behavior mechanisms ,food and beverages - Abstract
Historically, honey has been important in Greek culture. The chemical composition and the potential of Greek honey extracts (thyme, pine and fir honey) to influence the oestrogenic activity and the cell viability of breast (MCF-7), endometrial (Ishikawa) and prostate (PC-3) cancer cells were investigated. All honeys contained total phenolics, phenolic acids and hydroxymethylfurfural, the levels being highest in thyme honey. Sugars and volatile compounds, but not fatty acids, were detected in all honey extracts. Thyme, pine and fir honey showed both antioestrogenic and a weak oestrogenic effect at low and high concentration, respectively, in MCF-7 cells. Thyme honey reduced the viability of Ishikawa and PC-3 cells, whereas fir honey stimulated the viability of MCF-7 cells. In conclusion, Greek honeys are rich in phenolic compounds, they modulate oestrogenic activity whereas a thyme honey-enriched diet may prevent cancer-related processes in breast, prostate and endometrial cancer cells. © 2009 Elsevier Ltd. All rights reserved.
- Published
- 2009
23. 345 - Atorvastatin before prostatectomy and prostate cancer - a randomized, double-blind, placebo controlled clinical trial
- Author
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Murtola, T., Riikonen, J., Syvälä, H., Tolonen, T., Koskimäki, J., Pakarainen, T., Kaipia, A., Isotalo, T., Kujala, P., and Tammela, T.
- Published
- 2017
- Full Text
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24. To increase awareness of evidence-based practice with training
- Author
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Pitänen, A., primary, Leino, K., additional, Kortteisto, T., additional, Heino-Tolonen, T., additional, and Kaunonen, M., additional
- Published
- 2014
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25. Nonlinear Modeling and Synthesis of the Kantele-a Traditional Finnish String Instrument
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Vesa Valimaki, Karjalainen, M., Tolonen, T., and Erkut, C.
- Abstract
We apply a recently developed nonlinear string synthesis algorithm to modeling and synthesis of the kantele, which is a plucked string instrument used in traditional Finnish music for the past few thousand years. The new model combines formerly proposed linear plucked-string models with recent nonlinear extensions. As a result, a dual-polarization nonlinear model is obtained where the difference in the effective string length in two polarizations is accounted for, together with effects caused by the yielding termination of kantele strings and tension modulation. Calibration of model parameters is discussed. The model is also applicable to physical modeling of other plucked string instruments. Sound examples are available at www.acoustics.hut.fi/~vpv/publications/icmc99.htm.
- Published
- 1999
26. Organic mulches vs. black plastic in organic strawberry: does it make a difference for ground beetles (Col., Carabidae)?
- Author
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Tuovinen, T., primary, Kikas, A., additional, Tolonen, T., additional, and Kivijärvi, P., additional
- Published
- 2006
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27. 613Dual specificity phosphatase 1 and serum/glucocorticoid regulated kinase are down regulated in prostate cancer
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Tammela, T., primary, Rauhala, H., additional, Tolonen, T., additional, Martikainen, P., additional, Porkka, K., additional, and Visakorpi, T., additional
- Published
- 2005
- Full Text
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28. Silicon capillary gripper with self-alignment capability.
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Sariola, V., Liimatainen, V., Tolonen, T., Udd, R., and Quan Zhou
- Published
- 2011
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29. ARTHROPOD BIODIVERSITY ON CONVENTIONAL AND ORGANIC STRAWBERRY
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Tuovinen, T., primary and Tolonen, T., additional
- Published
- 2002
- Full Text
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30. Modeling of tension modulation nonlinearity in plucked strings
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Tolonen, T., primary, Valimaki, V., additional, and Karjalainen, M., additional
- Published
- 2000
- Full Text
- View/download PDF
31. A computationally efficient multipitch analysis model
- Author
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Tolonen, T., primary and Karjalainen, M., additional
- Published
- 2000
- Full Text
- View/download PDF
32. Multi-pitch and periodicity analysis model for sound separation and auditory scene analysis
- Author
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Karjalainen, M., primary and Tolonen, T., additional
- Published
- 1999
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- View/download PDF
33. Plucked-string synthesis algorithms with tension modulation nonlinearity
- Author
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Valimaki, V., primary, Tolonen, T., additional, and Karjalainen, M., additional
- Published
- 1999
- Full Text
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34. Importance of generalist epigeal predator species in a cereal field: predation on baits
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Tolonen, T., primary
- Published
- 1995
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35. Waste and labor productivity in production planning case finnish construction industry
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Koskenvesa, A., Lauri Koskela, Tolonen, T., and Sahlstedt, S.
- Subjects
other ,TH ,TS155194 ,built_and_human_env - Abstract
The main objective of this paper is to examine labor productivity and waste and their role in production planning and control in Finnish construction industry. Three hypothesis are tested: (1) the assumption that labor productivity concerning different construction work disciplines has developed very little in the last 30 years; (2) the amount of waste has stayed on a constant high level on sites in the Finnish construction industry; and (3) labor productivity does not develop because the initial information included in the production plans includes also waste as an accepted phenomenon.\ud A trend analysis of construction labor productivity is conducted over the period 1975-2008. Labor productivity and waste are examined through data from sites and Ratu-research (Finnish Construction Production Data on work methods and work rates). The results are examined along with prior international research findings on construction labor productivity, waste and production planning processes.\ud Although the data and sites, as well as the Ratu-research material, are Finnish, the results are internationally applicable and can be utilized and connected to modern ways of working anywhere. Evaluation and considerations made in this paper are followed by further work.
36. Model-based synthesis of the clavichord
- Author
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Vesa Valimaki, Laurson, M., Erkut, C., and Tolonen, T.
- Abstract
A synthesis model for the clavichord is developed applying the principles of digital waveguide modeling. A commuted waveguide synthesis model is used, where each tone is generated with two coupled string models that are excited with a common excitation signal that is obtained from analysis of recorded clavichord tones. The characteristic knock terminating tones played by the clavichord is reproduced by triggering a sample that is separated from a recorded tone. A simple technique enables the realistic variation of the fundamental frequency by using a control function that can be a constant value plus the impulse response of a low-order digital filter. Sound examples will be available at http://www.acoustics.hut.fi/~vpv/publications/icmc00.htm.
37. Importance of generalist epigeal predator species in a cereal field:predation on baits
- Author
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Tolonen, T.
- Subjects
BIOLOGICAL pest control agents ,PREDATION - Published
- 1995
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38. Single cell and spatial transcriptomics highlight the interaction of club-like cells with immunosuppressive myeloid cells in prostate cancer.
- Author
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Kiviaho A, Eerola SK, Kallio HML, Andersen MK, Hoikka M, Tiihonen AM, Salonen I, Spotbeen X, Giesen A, Parker CTA, Taavitsainen S, Hantula O, Marttinen M, Hermelo I, Ismail M, Midtbust E, Wess M, Devlies W, Sharma A, Krossa S, Häkkinen T, Afyounian E, Vandereyken K, Kint S, Kesseli J, Tolonen T, Tammela TLJ, Viset T, Størkersen Ø, Giskeødegård GF, Rye MB, Murtola T, Erickson A, Latonen L, Bova GS, Mills IG, Joniau S, Swinnen JV, Voet T, Mirtti T, Attard G, Claessens F, Visakorpi T, Rautajoki KJ, Tessem MB, Urbanucci A, and Nykter M
- Subjects
- Humans, Male, Myeloid-Derived Suppressor Cells metabolism, Myeloid-Derived Suppressor Cells immunology, Prostate metabolism, Prostate pathology, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, Epithelial Cells metabolism, Androgens metabolism, Androgens pharmacology, Tumor Microenvironment immunology, Tumor Microenvironment genetics, Single-Cell Analysis, Prostatic Neoplasms genetics, Prostatic Neoplasms metabolism, Prostatic Neoplasms pathology, Prostatic Neoplasms immunology, Transcriptome, Myeloid Cells metabolism
- Abstract
Prostate cancer treatment resistance is a significant challenge facing the field. Genomic and transcriptomic profiling have partially elucidated the mechanisms through which cancer cells escape treatment, but their relation toward the tumor microenvironment (TME) remains elusive. Here we present a comprehensive transcriptomic landscape of the prostate TME at multiple points in the standard treatment timeline employing single-cell RNA-sequencing and spatial transcriptomics data from 120 patients. We identify club-like cells as a key epithelial cell subtype that acts as an interface between the prostate and the immune system. Tissue areas enriched with club-like cells have depleted androgen signaling and upregulated expression of luminal progenitor cell markers. Club-like cells display a senescence-associated secretory phenotype and their presence is linked to increased polymorphonuclear myeloid-derived suppressor cell (PMN-MDSC) activity. Our results indicate that club-like cells are associated with myeloid inflammation previously linked to androgen deprivation therapy resistance, providing a rationale for their therapeutic targeting., Competing Interests: Competing interests C.T.A.P.’s employer may gain commercially from licensing data to Artera AI. G.A. received personal fees, grants, and travel support from Janssen and Astellas Pharma; personal fees or travel support from Pfizer, Novartis/AAA, Bayer Healthcare Pharmaceuticals, AstraZeneca, and Sanofi-Aventis; in addition, G.A.’s former employer, The Institute of Cancer Research, receives royalty income from abiraterone and G.A. receives a share of this income through the Institute’s Rewards to Discoverers Scheme. G.A. has received research funding (institutional) from Janssen, Astellas Pharma, and Novartis. All other authors declare no potential conflicts of interest., (© 2024. The Author(s).)
- Published
- 2024
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39. Micro-computed Tomography in the Evaluation of Eosin-stained Axillary Lymph Node Biopsies of Females Diagnosed with Breast Cancer.
- Author
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Laguna-Castro S, Salminen A, Arponen O, Hannula M, Rinta-Kiikka I, Hyttinen J, and Tolonen T
- Subjects
- Humans, Female, Middle Aged, Breast Neoplasms pathology, Breast Neoplasms diagnostic imaging, X-Ray Microtomography methods, Axilla, Eosine Yellowish-(YS), Lymph Nodes pathology, Lymph Nodes diagnostic imaging, Lymphatic Metastasis diagnostic imaging, Lymphatic Metastasis pathology
- Abstract
Histopathological investigation of metastasis in core needle axillary lymph node (ALN) biopsies is crucial for the prognosis and treatment planning of breast cancer patients. Biopsies are typically sliced and evaluated as two-dimensional (2D) images. Biopsy sampling errors and the limited view provided by 2D histology are leading factors contributing to false-negative results in the preoperative detection of metastatic lymph nodes and underestimation of metastatic foci.In this proof-of-concept study, we aim to explore the technical feasibility and the potential capacities of tridimensional (3D) X-ray micro-computed tomography imaging to expedite error detection, enhancement of histopathological accuracy, and precise measurement of metastatic lesion on ALN core needle biopsies of two breast cancer patients. Our self-developed micro-CT protocol uses eosin for the first time, a common histological dye, to enhance 3D architecture of ALNs. Performed analysis on the images of the ALN biopsies involves cancer tissue segmentation, swift biopsy evaluation, and measurement of the metastatic longest diameter and deposit volume.The eosin micro-CT protocol shows potential for an improved tumor deposit estimates, offering additional clinical value compared to standard 2D histology, however, further studies for validating this method are needed., Competing Interests: Declarations Competing interests The authors declare no competing interests., (© 2024. The Author(s).)
- Published
- 2024
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40. Lingonberry ( Vaccinium vitis - idaea L.) Skin Extract Prevents Weight Gain and Hyperglycemia in High-Fat Diet-Induced Model of Obesity in Mice.
- Author
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Ryyti R, Hämäläinen M, Tolonen T, Mäki M, Jaakkola M, Peltola R, and Moilanen E
- Subjects
- Animals, Male, Mice, Mice, Inbred C57BL, Blood Glucose metabolism, Blood Glucose drug effects, Diet, High-Fat adverse effects, Vaccinium vitis-idaea chemistry, Obesity etiology, Plant Extracts pharmacology, Weight Gain drug effects, Fruit chemistry, Hyperglycemia drug therapy, Hyperglycemia prevention & control, Disease Models, Animal
- Abstract
The percentage of obese people is increasing worldwide, causing versatile health problems. Obesity is connected to diseases such as diabetes and cardiovascular diseases, which are preceded by a state called metabolic syndrome. Diets rich in fruits and vegetables have been reported to decrease the risk of metabolic syndrome and type 2 diabetes. Berries with a high polyphenol content, including lingonberry ( Vaccinium vitis - idaea L.), have also been of interest to possibly prevent obesity-induced metabolic disturbances. In the present study, we prepared an extract from the by-product of a lingonberry juice production process (press cake/pomace) and investigated its metabolic effects in the high-fat diet-induced model of obesity in mice. The lingonberry skin extract partly prevented weight and epididymal fat gain as well as a rise in fasting glucose level in high-fat diet-fed mice. The extract also attenuated high-fat diet-induced glucose intolerance as measured by an intraperitoneal glucose tolerance test (IPGTT). The extract had no effect on the levels of cholesterol, triglyceride or the adipokines adiponectin, leptin, or resistin. The results extend previous data on the beneficial metabolic effects of lingonberry. Further research is needed to explore the mechanisms behind these effects and to develop further health-promoting lingonberry applications.
- Published
- 2024
- Full Text
- View/download PDF
41. Prostate Cancer Screening With PSA, Kallikrein Panel, and MRI: The ProScreen Randomized Trial.
- Author
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Auvinen A, Tammela TLJ, Mirtti T, Lilja H, Tolonen T, Kenttämies A, Rinta-Kiikka I, Lehtimäki T, Natunen K, Nevalainen J, Raitanen J, Ronkainen J, van der Kwast T, Riikonen J, Pétas A, Matikainen M, Taari K, Kilpeläinen T, and Rannikko AS
- Subjects
- Humans, Male, Middle Aged, Biopsy, Kallikreins blood, Magnetic Resonance Imaging, Neoplasm Grading, Prostate diagnostic imaging, Prostate pathology, Prostate-Specific Antigen blood, Risk, Finland epidemiology, Scandinavians and Nordic People statistics & numerical data, Biomarkers, Tumor blood, Early Detection of Cancer methods, Early Detection of Cancer statistics & numerical data, Prostatic Neoplasms blood, Prostatic Neoplasms diagnostic imaging, Prostatic Neoplasms epidemiology, Prostatic Neoplasms pathology
- Abstract
Importance: Prostate-specific antigen (PSA) screening has potential to reduce prostate cancer mortality but frequently detects prostate cancer that is not clinically important., Objective: To describe rates of low-grade (grade group 1) and high-grade (grade groups 2-5) prostate cancer identified among men invited to participate in a prostate cancer screening protocol consisting of a PSA test, a 4-kallikrein panel, and a magnetic resonance imaging (MRI) scan., Design, Setting, and Participants: The ProScreen trial is a clinical trial conducted in Helsinki and Tampere, Finland, that randomized 61 193 men aged 50 through 63 years who were free of prostate cancer in a 1:3 ratio to either be invited or not be invited to undergo screening for prostate cancer between February 2018 and July 2020., Interventions: Participating men randomized to the intervention underwent PSA testing. Those with a PSA level of 3.0 ng/mL or higher underwent additional testing for high-grade prostate cancer with a 4-kallikrein panel risk score. Those with a kallikrein panel score of 7.5% or higher underwent an MRI of the prostate gland, followed by targeted biopsies for those with abnormal prostate gland MRI findings. Final data collection occurred through June 31, 2023., Main Outcomes and Measures: In descriptive exploratory analyses, the cumulative incidence of low-grade and high-grade prostate cancer after the first screening round were compared between the group invited to undergo prostate cancer screening and the control group., Results: Of 60 745 eligible men (mean [SD] age, 57.2 [4.0] years), 15 201 were randomized to be invited and 45 544 were randomized not to be invited to undergo prostate cancer screening. Of 15 201 eligible males invited to undergo screening, 7744 (51%) participated. Among them, 32 low-grade prostate cancers (cumulative incidence, 0.41%) and 128 high-grade prostate cancers (cumulative incidence, 1.65%) were detected, with 1 cancer grade group result missing. Among the 7457 invited men (49%) who refused participation, 7 low-grade prostate cancers (cumulative incidence, 0.1%) and 44 high-grade prostate cancers (cumulative incidence, 0.6%) were detected, with 7 cancer grade groups missing. For the entire invited screening group, 39 low-grade prostate cancers (cumulative incidence, 0.26%) and 172 high-grade prostate cancers (cumulative incidence, 1.13%) were detected. During a median follow-up of 3.2 years, in the group not invited to undergo screening, 65 low-grade prostate cancers (cumulative incidence, 0.14%) and 282 high-grade prostate cancers (cumulative incidence, 0.62%) were detected. The risk difference for the entire group randomized to the screening invitation vs the control group was 0.11% (95% CI, 0.03%-0.20%) for low-grade and 0.51% (95% CI, 0.33%-0.70%) for high-grade cancer., Conclusions and Relevance: In this preliminary descriptive report from an ongoing randomized clinical trial, 1 additional high-grade cancer per 196 men and 1 low-grade cancer per 909 men were detected among those randomized to be invited to undergo a single prostate cancer screening intervention compared with those not invited to undergo screening. These preliminary findings from a single round of screening should be interpreted cautiously, pending results of the study's primary mortality outcome., Trial Registration: ClinicalTrials.gov Identifier: NCT03423303.
- Published
- 2024
- Full Text
- View/download PDF
42. Expected impact of MRI-targeted biopsy interreader variability among uropathologists on ProScreen prostate cancer screening trial: a pre-trial validation study.
- Author
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Hietikko R, Mirtti T, Kilpeläinen TP, Tolonen T, Räisänen-Sokolowski A, Nordling S, Hannus J, Laurila M, Taari K, Tammela TLJ, Autio R, Natunen K, Auvinen A, and Rannikko A
- Subjects
- Male, Humans, Early Detection of Cancer, Reproducibility of Results, Retrospective Studies, Prostate-Specific Antigen, Biopsy, Magnetic Resonance Imaging methods, Neoplasm Grading, Image-Guided Biopsy, Prostatic Neoplasms diagnostic imaging, Prostatic Neoplasms pathology
- Abstract
Purpose: Prostate cancer (PCa) histology, particularly the Gleason score, is an independent prognostic predictor in PCa. Little is known about the inter-reader variability in grading of targeted prostate biopsy based on magnetic resonance imaging (MRI). The aim of this study was to assess inter-reader variability in Gleason grading of MRI-targeted biopsy among uropathologists and its potential impact on a population-based randomized PCa screening trial (ProScreen)., Methods: From June 2014 to May 2018, 100 men with clinically suspected PCa were retrospectively selected. All men underwent prostate MRI and 86 underwent targeted prostate of the prostate. Six pathologists individually reviewed the pathology slides of the prostate biopsies. The five-tier ISUP (The International Society of Urological Pathology) grade grouping (GG) system was used. Fleiss' weighted kappa (κ) and Model-based kappa for associations were computed to estimate the combined agreement between individual pathologists., Results: GG reporting of targeted prostate was highly consistent among the trial pathologists. Inter-reader agreement for cancer (GG1-5) vs. benign was excellent (Model-based kappa 0.90, Fleiss' kappa κ = 0.90) and for clinically significant prostate cancer (csPCa) (GG2-5 vs. GG0 vs. GG1), it was good (Model-based kappa 0.70, Fleiss' kappa κ 0.67)., Conclusions: Inter-reader agreement in grading of MRI-targeted biopsy was good to excellent, while it was fair to moderate for MRI in the same cohort, as previously shown. Importantly, there was wide consensus by pathologists in assigning the contemporary GG on MRI-targeted biopsy suggesting high reproducibility of pathology reporting in the ProScreen trial., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
43. Working memory related functional connectivity in adult ADHD and its amenability to training: A randomized controlled trial.
- Author
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Tolonen T, Leppämäki S, Roine T, Alho K, Tani P, Koski A, Laine M, and Salmi J
- Subjects
- Humans, Male, Female, Adult, Young Adult, Nerve Net physiopathology, Nerve Net diagnostic imaging, Connectome methods, Neural Pathways physiopathology, Attention Deficit Disorder with Hyperactivity physiopathology, Attention Deficit Disorder with Hyperactivity diagnostic imaging, Memory, Short-Term physiology, Magnetic Resonance Imaging methods, Brain physiopathology, Brain diagnostic imaging
- Abstract
Background: Working memory (WM) deficits are among the most prominent cognitive impairments in attention deficit hyperactivity disorder (ADHD). While functional connectivity is a prevailing approach in brain imaging of ADHD, alterations in WM-related functional brain networks and their malleability by cognitive training are not well known. We examined whole-brain functional connectivity differences between adults with and without ADHD during n-back WM tasks and rest at pretest, as well as the effects of WM training on functional and structural brain connectivity in the ADHD group., Methods: Forty-two adults with ADHD and 36 neurotypical controls performed visuospatial and verbal n-back tasks during functional magnetic resonance imaging (fMRI). In addition, seven-minute resting state fMRI data and diffusion-weighted MR images were collected from all participants. The adults with ADHD continued into a 5-week randomized controlled WM training trial (experimental group training on a dual n-back task, n = 21; active control group training on Bejeweled II video game, n = 21), followed by a posttraining MRI. Brain connectivity was examined with Network-Based Statistic., Results: At the pretest, adults with ADHD had decreased functional connectivity compared with the neurotypical controls during both n-back tasks in networks encompassing fronto-parietal, temporal, occipital, cerebellar, and subcortical brain regions. Furthermore, WM-related connectivity in widespread networks was associated with performance accuracy in a continuous performance test. Regarding resting state connectivity, no group differences or associations with task performance were observed. WM training did not modulate functional or structural connectivity compared with the active controls., Conclusion: Our results indicate large-scale abnormalities in functional brain networks underlying deficits in verbal and visuospatial WM commonly faced in ADHD. Training-induced plasticity in these networks may be limited., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
44. Abnormal wiring of the structural connectome in adults with ADHD.
- Author
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Tolonen T, Roine T, Alho K, Leppämäki S, Tani P, Koski A, Laine M, and Salmi J
- Abstract
Current knowledge of white matter changes in large-scale brain networks in adult attention-deficit/hyperactivity disorder (ADHD) is scarce. We collected diffusion-weighted magnetic resonance imaging data in 40 adults with ADHD and 36 neurotypical controls and used constrained spherical deconvolution-based tractography to reconstruct whole-brain structural connectivity networks. We used network-based statistic (NBS) and graph theoretical analysis to investigate differences in these networks between the ADHD and control groups, as well as associations between structural connectivity and ADHD symptoms assessed with the Adult ADHD Self-Report Scale or performance in the Conners Continuous Performance Test 2 (CPT-2). NBS revealed decreased connectivity in the ADHD group compared to the neurotypical controls in widespread unilateral networks, which included subcortical and corticocortical structures and encompassed dorsal and ventral attention networks and visual and somatomotor systems. Furthermore, hypoconnectivity in a predominantly left-frontal network was associated with higher amount of commission errors in CPT-2. Graph theoretical analysis did not reveal topological differences between the groups or associations between topological properties and ADHD symptoms or task performance. Our results suggest that abnormal structural wiring of the brain in adult ADHD is manifested as widespread intrahemispheric hypoconnectivity in networks previously associated with ADHD in functional neuroimaging studies., (© 2023 Massachusetts Institute of Technology.)
- Published
- 2023
- Full Text
- View/download PDF
45. Breast density and the likelihood of malignant MRI-detected lesions in women diagnosed with breast cancer.
- Author
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Sassi A, Salminen A, Jukkola A, Tervo M, Mäenpää N, Turtiainen S, Tiainen L, Liimatainen T, Tolonen T, Huhtala H, Rinta-Kiikka I, and Arponen O
- Subjects
- Female, Humans, Breast Density, Retrospective Studies, Breast diagnostic imaging, Breast pathology, Mammography methods, Magnetic Resonance Imaging methods, Breast Neoplasms diagnosis
- Abstract
Objectives: To assess whether mammographic breast density in women diagnosed with breast cancer correlates with the total number of incidental magnetic resonance imaging (MRI)-detected lesions and the likelihood of the lesions being malignant., Methods: Patients diagnosed with breast cancer meeting the EUSOBI and EUSOMA criteria for preoperative breast MRI routinely undergo mammography and ultrasound before MRI at our institution. Incidental suspicious breast lesions detected in MRI are biopsied. We included patients diagnosed with invasive breast cancers between 2014 and 2019 who underwent preoperative breast MRI. One reader retrospectively determined breast density categories according to the 5
th edition of the BI-RADS lexicon., Results: Of 946 patients with 973 malignant primary breast tumors, 166 (17.5%) had a total of 175 (18.0%) incidental MRI-detected lesions (82 (46.9%) malignant and 93 (53.1%) benign). High breast density according to BI-RADS was associated with higher incidence of all incidental enhancing lesions in preoperative breast MRIs: 2.66 (95% confidence interval: 1.03-6.86) higher for BI-RADS density category B, 2.68 (1.04-6.92) for category C, and 3.67 (1.36-9.93) for category D compared to category A (p < 0.05). However, high breast density did not predict higher incidence of malignant incidental lesions (p = 0.741). Incidental MRI-detected lesions in the contralateral breast were more likely benign (p < 0.001): 18 (27.3%)/48 (72.7%) vs. 64 (58.7%)/45 (41.3%) malignant/benign incidental lesions in contralateral vs. ipsilateral breasts., Conclusion: Women diagnosed with breast cancer who have dense breasts have more incidental MRI-detected lesions, but higher breast density does not translate to increased likelihood of malignant incidental lesions., Clinical Relevance Statement: Dense breasts should not be considered as an indication for preoperative breast MRI in women diagnosed with breast cancer., Key Points: • The role of preoperative MRI of patients with dense breasts diagnosed with breast cancer is under debate. • Women with denser breasts have a higher incidence of all MRI-detected incidental breast lesions, but the incidence of malignant MRI-detected incidental lesions is not higher than in women with fatty breasts. • High breast density alone should not indicate preoperative breast MRI., (© 2023. The Author(s).)- Published
- 2023
- Full Text
- View/download PDF
46. Cancer origin tracing and timing in two high-risk prostate cancers using multisample whole genome analysis: prospects for personalized medicine.
- Author
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Nurminen A, Jaatinen S, Taavitsainen S, Högnäs G, Lesluyes T, Ansari-Pour N, Tolonen T, Haase K, Koskenalho A, Kankainen M, Jasu J, Rauhala H, Kesäniemi J, Nikupaavola T, Kujala P, Rinta-Kiikka I, Riikonen J, Kaipia A, Murtola T, Tammela TL, Visakorpi T, Nykter M, Wedge DC, Van Loo P, and Bova GS
- Subjects
- Male, Humans, Middle Aged, Androgen Antagonists therapeutic use, Precision Medicine, Prostatectomy methods, Oncogenes, Prostatic Neoplasms genetics, Prostatic Neoplasms therapy, Prostatic Neoplasms pathology
- Abstract
Background: Prostate cancer (PrCa) genomic heterogeneity causes resistance to therapies such as androgen deprivation. Such heterogeneity can be deciphered in the context of evolutionary principles, but current clinical trials do not include evolution as an essential feature. Whether or not analysis of genomic data in an evolutionary context in primary prostate cancer can provide unique added value in the research and clinical domains remains an open question., Methods: We used novel processing techniques to obtain whole genome data together with 3D anatomic and histomorphologic analysis in two men (GP5 and GP12) with high-risk PrCa undergoing radical prostatectomy. A total of 22 whole genome-sequenced sites (16 primary cancer foci and 6 lymph node metastatic) were analyzed using evolutionary reconstruction tools and spatio-evolutionary models. Probability models were used to trace spatial and chronological origins of the primary tumor and metastases, chart their genetic drivers, and distinguish metastatic and non-metastatic subclones., Results: In patient GP5, CDK12 inactivation was among the first mutations, leading to a PrCa tandem duplicator phenotype and initiating the cancer around age 50, followed by rapid cancer evolution after age 57, and metastasis around age 59, 5 years prior to prostatectomy. In patient GP12, accelerated cancer progression was detected after age 54, and metastasis occurred around age 56, 3 years prior to prostatectomy. Multiple metastasis-originating events were identified in each patient and tracked anatomically. Metastasis from prostate to lymph nodes occurred strictly ipsilaterally in all 12 detected events. In this pilot, metastatic subclone content analysis appears to substantially enhance the identification of key drivers. Evolutionary analysis' potential impact on therapy selection appears positive in these pilot cases., Conclusions: PrCa evolutionary analysis allows tracking of anatomic site of origin, timing of cancer origin and spread, and distinction of metastatic-capable from non-metastatic subclones. This enables better identification of actionable targets for therapy. If extended to larger cohorts, it appears likely that similar analyses could add substantial biological insight and clinically relevant value., (© 2023. BioMed Central Ltd., part of Springer Nature.)
- Published
- 2023
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47. Early life stress is associated with the default mode and fronto-limbic network connectivity among young adults.
- Author
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Ilomäki M, Lindblom J, Salmela V, Flykt M, Vänskä M, Salmi J, Tolonen T, Alho K, Punamäki RL, and Wikman P
- Abstract
Exposure to early life stress (ELS) is associated with a variety of detrimental psychological and neurodevelopmental effects. Importantly, ELS has been associated with regional alterations and aberrant connectivity in the structure and functioning of brain regions involved in emotion processing and self-regulation, creating vulnerability to mental health problems. However, longitudinal research regarding the impact of ELS on functional connectivity between brain regions in the default mode network (DMN) and fronto-limbic network (FLN), both implicated in emotion-related processes, is relatively scarce. Neuroimaging research on ELS has mostly focused on single nodes or bi-nodal connectivity instead of functional networks. We examined how ELS is associated with connectivity patterns within the DMN and FLN during rest in early adulthood. The participants ( n = 86; 47 females) in the current functional magnetic resonance imaging (fMRI) study were young adults (18-21 years old) whose families had participated in a longitudinal study since pregnancy. ELS was assessed both prospectively (parental reports of family relationship problems and mental health problems during pregnancy and infancy) and retrospectively (self-reported adverse childhood experiences). Inter-subject representational similarity analysis (IS-RSA) and multivariate distance matrix regression (MDMR) were used to analyze the association between ELS and the chosen networks. The IS-RSA results suggested that prospective ELS was associated with complex alterations within the DMN, and that retrospective ELS was associated with alterations in the FLN. MDMR results, in turn, suggested that that retrospective ELS was associated with DMN connectivity. Mean connectivity of the DMN was also associated with retrospective ELS. Analyses further showed that ELS-related alterations in the FLN were associated with increased connectivity between the prefrontal and limbic regions, and between different prefrontal regions. These results suggest that exposure to ELS in infancy might have long-lasting influences on functional brain connectivity that persist until early adulthood. Our results also speak for the importance of differentiating prospective and retrospective assessment methods to understand the specific neurodevelopmental effects of ELS., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Ilomäki, Lindblom, Salmela, Flykt, Vänskä, Salmi, Tolonen, Alho, Punamäki and Wikman.)
- Published
- 2022
- Full Text
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48. Population-based randomized trial of screening for clinically significant prostate cancer ProScreen: a pilot study.
- Author
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Rannikko A, Leht M, Mirtti T, Kenttämies A, Tolonen T, Rinta-Kiikka I, Kilpeläinen TP, Natunen K, Lilja H, Lehtimäki T, Raitanen J, Kujala P, Ronkainen J, Matikainen M, Petas A, Taari K, Tammela T, and Auvinen A
- Subjects
- Early Detection of Cancer methods, Humans, Image-Guided Biopsy methods, Kallikreins, Magnetic Resonance Imaging, Male, Pilot Projects, Prostate-Specific Antigen, Prostatic Neoplasms diagnostic imaging
- Abstract
Objectives: To evaluate the feasibility of a population-based screening trial using prostate-specific antigen (PSA), a kallikrein panel and multiparametric magnetic resonance imaging (MRI) aimed at minimizing overdiagnosis, while retaining mortality benefit., Patients and Methods: Feasibility of the screening algorithm was evaluated in terms of participation, screening test results and cancer detection. A random sample of 400 men aged 65 years was identified from the population registry and invited for screening with three stepwise tests (PSA, kallikrein panel and MRI). Men with PSA levels ≥3 ng/mL were further tested with the kallikrein panel, and those with positive findings (risk >7.5%) were referred for prostate MRI. Men with positive MRI (Prostate Imaging Reporting and Data System [PI-RADS] score 3-5) had targeted biopsies only. Men with negative MRI, but PSA density ≥0.15 underwent systematic biopsies., Results: Of the 399 men invited, 158 (40%) participated and 27 had PSA levels ≥3 ng/mL (7% of the invited and 17% of the participants). Of these, 22 had a positive kallikrein panel (6% of the invited and 81% of the PSA-positive men). Finally, 10 men (3% of the invited and 45% of 4Kscore [kallikrein panel]-positive) had a suspicious MRI finding (PI-RADS score ≥3) and five were diagnosed with a clinically significant prostate cancer (Gleason Grade Group [GG] ≥2) at fusion biopsy (3% of the participants), with two GG 1 cases (1%). Additional testing (kallikrein panel and MRI) after PSA reduced biopsies by 56%., Conclusion: The findings constitute proof of principle for our screening protocol, as we achieved a substantial detection rate for clinically significant cancer with few clinically insignificant cases. Participation, however, was suboptimal., (© 2021 The Authors. BJU International published by John Wiley & Sons Ltd on behalf of BJU International.)
- Published
- 2022
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49. Laser desorption tissue imaging with Differential Mobility Spectrometry.
- Author
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Lepomäki M, Anttalainen A, Vuorinen A, Tolonen T, Kontunen A, Karjalainen M, Vehkaoja A, Roine A, and Oksala N
- Subjects
- Animals, Female, Humans, Ion Mobility Spectrometry, Lasers, Spectrum Analysis, Swine, Breast pathology, Breast Neoplasms pathology
- Abstract
Pathological gross examination of breast carcinoma samples is sometimes laborious. A tissue pre-mapping method could indicate neoplastic areas to the pathologist and enable focused sampling. Differential Mobility Spectrometry (DMS) is a rapid and affordable technology for complex gas mixture analysis. We present an automated tissue laser analysis system for imaging approaches (iATLAS), which utilizes a computer-controlled laser evaporator unit coupled with a DMS gas analyzer. The system is demonstrated in the classification of porcine tissue samples and three human breast carcinomas. Tissue samples from eighteen landrace pigs were classified with the system based on a pre-designed matrix (spatial resolution 1-3 mm). The smoke samples were analyzed with DMS, and tissue classification was performed with several machine learning approaches. Porcine skeletal muscle (n = 1030), adipose tissue (n = 1329), normal breast tissue (n = 258), bone (n = 680), and liver (n = 264) were identified with 86% cross-validation (CV) accuracy with a convolutional neural network (CNN) model. Further, a panel tissue that comprised all five tissue types was applied as an independent validation dataset. In this test, 82% classification accuracy with CNN was achieved. An analogous procedure was applied to demonstrate the feasibility of iATLAS in breast cancer imaging according to 1) macroscopically and 2) microscopically annotated data with 10-fold CV and SVM (radial kernel). We reached a classification accuracy of 94%, specificity of 94%, and sensitivity of 93% with the macroscopically annotated data from three breast cancer specimens. The microscopic annotation was applicable to two specimens. For the first specimen, the classification accuracy was 84% (specificity 88% and sensitivity 77%). For the second, the classification accuracy was 72% (specificity 88% and sensitivity 24%). This study presents a promising method for automated tissue imaging in an animal model and lays foundation for breast cancer imaging., (Copyright © 2022 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2022
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50. Radiological and pathological assessment of response to neoadjuvant CDK4/6 inhibitor and endocrine treatments in a real-life setting-initial results.
- Author
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Moisander M, Salminen A, Jukkola A, Sassi A, Tervo M, Mäenpää N, Tiainen L, Rinta-Kiikka I, Tolonen T, and Arponen O
- Abstract
Background: Neoadjuvant endocrine therapy is an alternative to neoadjuvant chemotherapy in women with inoperable luminal-like breast cancers. Neoadjuvant cyclin-dependent kinase 4/6 inhibitor treatment combined with endocrine treatment (CDK4/6I + E) is interesting given the combination's utility in the treatment of metastatic breast cancer. Currently, the literature on the radiological response evaluation of patients treated with neoadjuvant CDK4/6I + E in a real-life setting is scarce., Purpose: To conduct a radiological response evaluation of patients treated with neoadjuvant CDK4/6I + E in a real-life setting., Material and Methods: We retrospectively reviewed clinical, pathological, and radiological findings of six patients with luminal-like breast cancers treated with neoadjuvant CDK4/6I + E treatment. The radiological neoadjuvant CDK4/6I + E response was evaluated with the RECIST 1.1 criteria and the pathological residual disease was assessed using the Residual Cancer Burden (RBC) criteria., Results: None of the patients achieved a complete radiological magnetic resonance imaging (MRI)-determined response or a complete pathological response; three (50%) patients had a partial radiological response; in the three others, the disease remained stable radiologically. All of the tumors were rendered susceptible to surgical treatment. Two out of six (33.3%) patients had a moderate response (RBC-II); four (66.7%) had an extensive residual disease (RBC-III) in the final surgical sample., Conclusion: Although none of the patients achieved a pathologically complete response, neoadjuvant CDK4/6I + E treatment rendered all tumors operable. MRI appears to be reliable in the assessment of the neoadjuvant CDK4/6I + E treatment response in a real-life setting. Larger studies are warranted to confirm these results., Competing Interests: Declaration of conflicting interests: The author(s) declared the following potential conflicts of interest with respect to the research, authorship, and/or publication of this article: Doctors Salminen, Sassi, Tervo, Rinta-Kiikka, Tolonen, and Arponen report no conflicts of interest. Doctor Moisander reports consultant and travel fees from Takeda and Roche. Doctor Mäenpää reports consultant fees from Lilly and travel fees from Pfizer. Doctor Tiainen reports consultant and travel fees from Novartis, Roche, and Pfizer., (© The Foundation Acta Radiologica 2021.)
- Published
- 2021
- Full Text
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