79 results on '"Tobias Hepp"'
Search Results
2. Diagnostic Utility of Interleukin-6 in Early-Onset Sepsis among Term Newborns: Impact of Maternal Risk Factors and CRP Evaluation
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Maria Schleier, Julia Lubig, Sven Kehl, Steven Hébert, Joachim Woelfle, Adriana van der Donk, Alisa Bär, Heiko Reutter, Tobias Hepp, and Patrick Morhart
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sepsis ,neonatal ,early-onset sepsis ,EOS ,Interleukin-6 ,C-reactive protein ,Pediatrics ,RJ1-570 - Abstract
(1) Background: Interleukin-6 (IL-6) levels act as an early infection marker preceding C-reactive protein (CRP) elevation. This study seeks to analyze IL-6 behavior in suspected early-onset sepsis (EOS) cases among term newborns, comparing it to that of CRP and evaluating IL-6’s diagnostic utility. We also aim to assess the impact of maternal risk factors on EOS in term newborns, quantifying their influence for informed decision making. (2) Methods: The retrospective data analysis included 533 term newborns who were admitted to our hospital because of suspected EOS. IL-6, CRP, and the impact of maternal risk factors were analyzed in the context of EOS using binomial test, Chi-squared test, logistic and linear regression. (3) Results: In the cases of EOS, both IL-6 and CRP were elevated. The increase in CRP can be predicted by the initial increase in IL-6 levels. Among the assessed risk factors, intrapartum maternal fever (adjusted odds ratio 18.1; 95% CI (1.7–4.1)) was identified as the only risk factor significantly associated with EOS. (4) Conclusions: Employing IL-6 as an early infection marker enhanced EOS diagnostic precision due to its detectable early rise. However, caution is required, as elevations in IL-6 and CRP levels do not exclusively indicate EOS. Increased CRP levels in healthy newborns with maternal risk factors may be attributed to dynamics of vaginal labor.
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- 2023
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3. Mixture density networks for the indirect estimation of reference intervals
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Tobias Hepp, Jakob Zierk, Manfred Rauh, Markus Metzler, and Sarem Seitz
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Mixture density networks ,Reference intervals ,Latent class regression ,Distributional regression ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background Reference intervals represent the expected range of physiological test results in a healthy population and are essential to support medical decision making. Particularly in the context of pediatric reference intervals, where recruitment regulations make prospective studies challenging to conduct, indirect estimation strategies are becoming increasingly important. Established indirect methods enable robust identification of the distribution of “healthy” samples from laboratory databases, which include unlabeled pathologic cases, but are currently severely limited when adjusting for essential patient characteristics such as age. Here, we propose the use of mixture density networks (MDN) to overcome this problem and model all parameters of the mixture distribution in a single step. Results Estimated reference intervals from varying settings with simulated data demonstrate the ability to accurately estimate latent distributions from unlabeled data using different implementations of MDNs. Comparing the performance with alternative estimation approaches further highlights the importance of modeling the mixture component weights as a function of the input in order to avoid biased estimates for all other parameters and the resulting reference intervals. We also provide a strategy to generate partially customized starting weights to improve proper identification of the latent components. Finally, the application on real-world hemoglobin samples provides results in line with current gold standard approaches, but also suggests further investigations with respect to adequate regularization strategies in order to prevent overfitting the data. Conclusions Mixture density networks provide a promising approach capable of extracting the distribution of healthy samples from unlabeled laboratory databases while simultaneously and explicitly estimating all parameters and component weights as non-linear functions of the covariate(s), thereby allowing the estimation of age-dependent reference intervals in a single step. Further studies on model regularization and asymmetric component distributions are warranted to consolidate our findings and expand the scope of applications.
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- 2022
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4. Deep learning-based age estimation from clinical Computed Tomography image data of the thorax and abdomen in the adult population.
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Bjarne Kerber, Tobias Hepp, Thomas Küstner, and Sergios Gatidis
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Medicine ,Science - Abstract
Aging is an important risk factor for disease, leading to morphological change that can be assessed on Computed Tomography (CT) scans. We propose a deep learning model for automated age estimation based on CT- scans of the thorax and abdomen generated in a clinical routine setting. These predictions could serve as imaging biomarkers to estimate a "biological" age, that better reflects a patient's true physical condition. A pre-trained ResNet-18 model was modified to predict chronological age as well as to quantify its aleatoric uncertainty. The model was trained using 1653 non-pathological CT-scans of the thorax and abdomen of subjects aged between 20 and 85 years in a 5-fold cross-validation scheme. Generalization performance as well as robustness and reliability was assessed on a publicly available test dataset consisting of thorax-abdomen CT-scans of 421 subjects. Score-CAM saliency maps were generated for interpretation of model outputs. We achieved a mean absolute error of 5.76 ± 5.17 years with a mean uncertainty of 5.01 ± 1.44 years after 5-fold cross-validation. A mean absolute error of 6.50 ± 5.17 years with a mean uncertainty of 6.39 ± 1.46 years was obtained on the test dataset. CT-based age estimation accuracy was largely uniform across all age groups and between male and female subjects. The generated saliency maps highlighted especially the lumbar spine and abdominal aorta. This study demonstrates, that accurate and generalizable deep learning-based automated age estimation is feasible using clinical CT image data. The trained model proved to be robust and reliable. Methods of uncertainty estimation and saliency analysis improved the interpretability.
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- 2023
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5. Overcoming barriers to data sharing with medical image generation: a comprehensive evaluation
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August DuMont Schütte, Jürgen Hetzel, Sergios Gatidis, Tobias Hepp, Benedikt Dietz, Stefan Bauer, and Patrick Schwab
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Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Abstract Privacy concerns around sharing personally identifiable information are a major barrier to data sharing in medical research. In many cases, researchers have no interest in a particular individual’s information but rather aim to derive insights at the level of cohorts. Here, we utilise generative adversarial networks (GANs) to create medical imaging datasets consisting entirely of synthetic patient data. The synthetic images ideally have, in aggregate, similar statistical properties to those of a source dataset but do not contain sensitive personal information. We assess the quality of synthetic data generated by two GAN models for chest radiographs with 14 radiology findings and brain computed tomography (CT) scans with six types of intracranial haemorrhages. We measure the synthetic image quality by the performance difference of predictive models trained on either the synthetic or the real dataset. We find that synthetic data performance disproportionately benefits from a reduced number of classes. Our benchmark also indicates that at low numbers of samples per class, label overfitting effects start to dominate GAN training. We conducted a reader study in which trained radiologists discriminate between synthetic and real images. In accordance with our benchmark results, the classification accuracy of radiologists improves with an increasing resolution. Our study offers valuable guidelines and outlines practical conditions under which insights derived from synthetic images are similar to those that would have been derived from real data. Our results indicate that synthetic data sharing may be an attractive alternative to sharing real patient-level data in the right setting.
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- 2021
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6. Latent class distributional regression for the estimation of non-linear reference limits from contaminated data sources
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Tobias Hepp, Jakob Zierk, Manfred Rauh, Markus Metzler, and Andreas Mayr
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Latent class regression ,Finite mixture models ,Distributional regression ,Reference limits ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background Medical decision making based on quantitative test results depends on reliable reference intervals, which represent the range of physiological test results in a healthy population. Current methods for the estimation of reference limits focus either on modelling the age-dependent dynamics of different analytes directly in a prospective setting or the extraction of independent distributions from contaminated data sources, e.g. data with latent heterogeneity due to unlabeled pathologic cases. In this article, we propose a new method to estimate indirect reference limits with non-linear dependencies on covariates from contaminated datasets by combining the framework of mixture models and distributional regression. Results Simulation results based on mixtures of Gaussian and gamma distributions suggest accurate approximation of the true quantiles that improves with increasing sample size and decreasing overlap between the mixture components. Due to the high flexibility of the framework, initialization of the algorithm requires careful considerations regarding appropriate starting weights. Estimated quantiles from the extracted distribution of healthy hemoglobin concentration in boys and girls provide clinically useful pediatric reference limits similar to solutions obtained using different approaches which require more samples and are computationally more expensive. Conclusions Latent class distributional regression models represent the first method to estimate indirect non-linear reference limits from a single model fit, but the general scope of applications can be extended to other scenarios with latent heterogeneity.
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- 2020
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7. Independent attenuation correction of whole body [18F]FDG-PET using a deep learning approach with Generative Adversarial Networks
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Karim Armanious, Tobias Hepp, Thomas Küstner, Helmut Dittmann, Konstantin Nikolaou, Christian La Fougère, Bin Yang, and Sergios Gatidis
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PET ,Attenuation correction ,Deep learning ,Whole body ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Abstract Background Attenuation correction (AC) of PET data is usually performed using a second imaging for the generation of attenuation maps. In certain situations however—when CT- or MR-derived attenuation maps are corrupted or CT acquisition solely for the purpose of AC shall be avoided—it would be of value to have the possibility of obtaining attenuation maps only based on PET information. The purpose of this study was to thus develop, implement, and evaluate a deep learning-based method for whole body [18F]FDG-PET AC which is independent of other imaging modalities for acquiring the attenuation map. Methods The proposed method is investigated on whole body [18F]FDG-PET data using a Generative Adversarial Networks (GAN) deep learning framework. It is trained to generate pseudo CT images (CTGAN) based on paired training data of non-attenuation corrected PET data (PETNAC) and corresponding CT data. Generated pseudo CTs are then used for subsequent PET AC. One hundred data sets of whole body PETNAC and corresponding CT were used for training. Twenty-five PET/CT examinations were used as test data sets (not included in training). On these test data sets, AC of PET was performed using the acquired CT as well as CTGAN resulting in the corresponding PET data sets PETAC and PETGAN. CTGAN and PETGAN were evaluated qualitatively by visual inspection and by visual analysis of color-coded difference maps. Quantitative analysis was performed by comparison of organ and lesion SUVs between PETAC and PETGAN. Results Qualitative analysis revealed no major SUV deviations on PETGAN for most anatomic regions; visually detectable deviations were mainly observed along the diaphragm and the lung border. Quantitative analysis revealed mean percent deviations of SUVs on PETGAN of − 0.8 ± 8.6% over all organs (range [− 30.7%, + 27.1%]). Mean lesion SUVs showed a mean deviation of 0.9 ± 9.2% (range [− 19.6%, + 29.2%]). Conclusion Independent AC of whole body [18F]FDG-PET is feasible using the proposed deep learning approach yielding satisfactory PET quantification accuracy. Further clinical validation is necessary prior to implementation in clinical routine applications.
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- 2020
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8. Accuracy and concordance of measurement methods to assess non-adherence after renal transplantation - a prospective study
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Marietta Lieb, Tobias Hepp, Mario Schiffer, Mirian Opgenoorth, and Yesim Erim
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Adherence ,Accuracy ,Renal transplant recipients ,Measurement methods ,Electronic monitoring ,Self-report ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Abstract Background Non-adherence (NA) to immunosuppressants (IS) among renal transplant recipients (RTRs) is associated with higher risk of allograft rejection, graft loss, and mortality. A precise measurement of NA is indispensable, although its prevalence differs greatly depending on the respective measurement methods. The objective of this study was to assess the accuracy and concordance of different measurement methods of NA in patients after renal transplantation. Design and methods This was a single-center prospective observational study. At baseline (T0), NA was measured via physicians’ estimates (PE), self-reports (SR), and tacrolimus trough level variability (CV%) in 78 RTRs. A Visual Analogue Scale (VAS, 0–100%) was applied both for SR and PE. In addition, we used BAASIS© for SR and a 5-point Likert scale for PE. NA was measured prospectively via electronic monitoring (EM, VAICA©) during a three month period. Meanwhile, all participants received phone calls in a two week interval (T1-T6) during which SRs were given. Results Seventy-eight RTRs participated in our study. At t0, NA rates of 6.4%, 28.6%, and 15.4% were found for PE, SR, and CV%, respectively. No correlation was found between these methods. During the study, the percentages of self-reported and electronically monitored adherence remained high, with a minimum mean of 91.2% for the strictest adherence measure (Timing Adherence ±30 min). Our results revealed a moderate to high association between SR and EM. In contrast to PE and CV%, SR significantly predicted electronically monitored adherence. Overall, a decreasing effect of electronically monitored adherence was found for both taking and timing adherence (±2 h, ±30 min) over the course of the study. Discussion The moderate to high concordance of SR and EM suggests that both methods measure NA equally accurately. SR seems to be a method that can adequately depict electronically monitored NA and may represent a good and economical instrument to assess NA in clinical practice. The increased adherence at the beginning of the study and its subsequent decrease suggests an intervention effect. Surveillance of IS intake via EM with intermittent phone calls could improve adherence on a short-term basis. To establish long-term effects, further research is necessary.
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- 2020
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9. Comprehensive assessment of knee joint synovitis at 7 T MRI using contrast-enhanced and non-enhanced sequences
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Christoph Treutlein, Tobias Bäuerle, Armin M. Nagel, Ali Guermazi, Arnd Kleyer, David Simon, Georg Schett, Tobias Hepp, Michael Uder, and Frank W. Roemer
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MRI ,Knee ,Synovitis ,7 T ,Ultra-high field MRI ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Abstract Background Seven T ultra-high field MRI systems have recently been approved for clinical use by the U.S. and European regulatory agencies. These systems are now being used clinically and will likely be more widely available in the near future. One of the applications of 7 T systems is musculoskeletal disease and particularly peripheral arthritis imaging. Since the introduction of potent anti-rheumatic therapies over the last two decades MRI has gained increasing importance particularly for assessment of disease activity in early stages of several rheumatic disorders. Commonly gadolinium-based contrast agents are used for assessment of synovitis. Due to potential side-effects of gadolinium non-enhanced techniques are desirable that enable visualization of inflammatory disease manifestations. The feasibility of 7 T MRI for evaluation of peripheral arthritis has not been shown up to now. Aim of our study was to evaluate the feasibility of contrast-enhanced (CE) and non-enhanced MRI at 7 T for the assessment of knee joint synovitis. Method Seven T MRI was acquired for 10 patients with an established diagnosis of psoriatic or rheumatoid arthritis. The study pulse sequence protocol was comprised of a sagittal intermediate-weighted fat-suppressed (FS), axial fluid-attenuated inversion recovery (FLAIR) FS, sagittal 3D T1-weighted dynamic contrast enhanced (DCE) and an axial static 2D T1-weighted FS contrast-enhanced sequence (T1-FS CE). Ordinal scoring on non-enhanced (Hoffa- and effusion-synovitis) and enhanced MRI (11-point synovitis score), and comparison of FLAIR-FS with static T1-FS CE MRI using semiquantitative (SQ) grading and volume assessment was performed. For inter- and intra-reader reliability assessment weighted kappa statistics for ordinal scores and intraclass correlation coefficients (ICC) for continuous variables were used. Results The total length of study protocol was 15 min 38 s. Different amounts of synovitis were observed in all patients (mild: n = 3; moderate: n = 5; severe: n = 2). Consistently, SQ assessment yielded significantly lower peripatellar summed synovitis scores for the FLAIR-FS sequence compared to the CE T1-FS sequence (p
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- 2020
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10. Psychosocial impact of prognostic genetic testing in uveal melanoma patients: a controlled prospective clinical observational study
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Marietta Lieb, Sefik Tagay, Anja Breidenstein, Tobias Hepp, Claudia H. D. Le Guin, Jennifer Scheel, Dietmar R. Lohmann, Norbert Bornfeld, Martin Teufel, and Yesim Erim
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Prognostic genetic testing ,Uveal melanoma ,Psychosocial impact ,Controlled prospective clinical observation trial ,Psycho-oncological intervention ,Psychology ,BF1-990 - Abstract
Abstract Background The risk of metastases in uveal melanoma can accurately be estimated through genetic analysis of the tumor. A growing number of patients decide to receive information on their prognosis, although this can be extremely burdensome. Studies on the psychosocial impact of testing are sparse. The objective of this study was to examine traits of patients opting for prognostication, to investigate its psychosocial impact and the use of psycho-oncological services over time. We further examined characteristics of patients utilizing these services and risk factors of prolonged psychological distress. Design and methods This study is a non-randomized controlled prospective clinical observational trial. Patients availing for prognostication formed the test group, while those who opted out constituted the observational group. The psychosocial impact of genetic testing was assessed with the following variables: resilience, social support, fear of tumor progression, depression, general distress, health-related quality of life, estimation of the perceived risk, and the utilization of psycho-oncological interventions. Data were assessed at five different time points over a period of 12 months. We applied binary logistic regression analysis, multiple linear regressions and a mixed model. Results Of 175 patients, 63 decided to obtain prognostic information. Treatment method (enucleation > brachytherapy), lower social support and higher general distress could significantly predict patient’s choice for prognostic testing. After result announcement, perceived risk of metastases was significantly increased in patients with poor prognosis, while it decreased in those with good prognosis. Overall, a significant decrease over time appeared concerning fear of progression, general distress, depression and anxiety. Mental quality of life increased over time. The utilization of psycho-oncological interventions increased significantly after prognostication; however, this was equivalent in the test and observational groups. Female sex, higher general distress and higher anxiety predicted greater use of psycho-oncological interventions. Discussion Availing of prognostic testing is not associated with poorer subsequent psychological well-being. It rather may help to alleviate distress and promote a more realistic risk perception. However, psychological support should be available to all patients, independent of prognosis and treatment, especially considering that patients with low social support and high distress increasingly opt for prognostication.
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- 2020
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11. Evaluating the Use of Neonatal Colonization Screening for Empiric Antibiotic Therapy of Sepsis and Pneumonia
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Alisa Bär, Sabina Schmitt-Grohé, Jürgen Held, Julia Lubig, Gregor Hanslik, Fabian B. Fahlbusch, Heiko Reutter, Joachim Woelfle, Adriana van der Donk, Maria Schleier, Tobias Hepp, and Patrick Morhart
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multidrug-resistant Gram-negative bacteria ,MDRGN ,multidrug-resistant bacteria ,MDR ,neonates ,colonization ,Therapeutics. Pharmacology ,RM1-950 - Abstract
(1) Background: Since 2013, weekly screening for multidrug-resistant Gram-negative (MDRGN) bacteria has been performed in German neonatal intensive care units (NICU). National guidelines recommend considering these colonization analyses for antibiotic treatment regimens. Our retrospective single center study provides insight into the clinical dichotomy of bacterial colonization and infection rates in neonates. (2) Methods: We analyzed microbiological data of neonates admitted to our tertiary level NICU over nine years. Colonization with MDRGN/Serratia marcescens (SERMA) was compared to microbiological findings in sepsis and pneumonia. (3) Results: We analyzed 917 blood and 1799 tracheal aspirate samples. After applying criteria from the Nosocomial Infection Surveillance for Neonates (NEO-KISS), we included 52 and 55 cases of sepsis and pneumonia, respectively; 19.2% of sepsis patients and 34.5% of pneumonia patients had a prior colonization with MDRGN bacteria or SERMA. In these patients, sepsis was not attributable to MDRGN bacteria yet one SERMA, while in pneumonias, ten MDRGN bacteria and one SERMA were identified. We identified late-onset pneumonia and cesarean section as risk factors for MDRGN/SERMA acquisition. (4) Conclusions: Colonization screening is a useful tool for hygiene surveillance. However, our data suggest that consideration of colonization with MDRGN/SERMA might promote extensive use of last resort antibiotics in neonates.
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- 2023
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12. Development of a Hybrid-Imaging-Based Prognostic Index for Metastasized-Melanoma Patients in Whole-Body 18F-FDG PET/CT and PET/MRI Data
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Thomas Küstner, Jonas Vogel, Tobias Hepp, Andrea Forschner, Christina Pfannenberg, Holger Schmidt, Nina F. Schwenzer, Konstantin Nikolaou, Christian la Fougère, and Ferdinand Seith
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melanoma ,multiparametric PET/MRI ,PET/CT ,risk assessment ,artificial intelligence ,Medicine (General) ,R5-920 - Abstract
Besides tremendous treatment success in advanced melanoma patients, the rapid development of oncologic treatment options comes with increasingly high costs and can cause severe life-threatening side effects. For this purpose, predictive baseline biomarkers are becoming increasingly important for risk stratification and personalized treatment planning. Thus, the aim of this pilot study was the development of a prognostic tool for the risk stratification of the treatment response and mortality based on PET/MRI and PET/CT, including a convolutional neural network (CNN) for metastasized-melanoma patients before systemic-treatment initiation. The evaluation was based on 37 patients (19 f, 62 ± 13 y/o) with unresectable metastasized melanomas who underwent whole-body 18F-FDG PET/MRI and PET/CT scans on the same day before the initiation of therapy with checkpoint inhibitors and/or BRAF/MEK inhibitors. The overall survival (OS), therapy response, metastatically involved organs, number of lesions, total lesion glycolysis, total metabolic tumor volume (TMTV), peak standardized uptake value (SULpeak), diameter (Dmlesion) and mean apparent diffusion coefficient (ADCmean) were assessed. For each marker, a Kaplan–Meier analysis and the statistical significance (Wilcoxon test, paired t-test and Bonferroni correction) were assessed. Patients were divided into high- and low-risk groups depending on the OS and treatment response. The CNN segmentation and prediction utilized multimodality imaging data for a complementary in-depth risk analysis per patient. The following parameters correlated with longer OS: a TMTV < 50 mL; no metastases in the brain, bone, liver, spleen or pleura; ≤4 affected organ regions; no metastases; a Dmlesion > 37 mm or SULpeak < 1.3; a range of the ADCmean < 600 mm2/s. However, none of the parameters correlated significantly with the stratification of the patients into the high- or low-risk groups. For the CNN, the sensitivity, specificity, PPV and accuracy were 92%, 96%, 92% and 95%, respectively. Imaging biomarkers such as the metastatic involvement of specific organs, a high tumor burden, the presence of at least one large lesion or a high range of intermetastatic diffusivity were negative predictors for the OS, but the identification of high-risk patients was not feasible with the handcrafted parameters. In contrast, the proposed CNN supplied risk stratification with high specificity and sensitivity.
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- 2022
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13. Apparent Diffusion Coefficient (ADC) Histogram Analysis in Parotid Gland Tumors: Evaluating a Novel Approach for Differentiation between Benign and Malignant Parotid Lesions Based on Full Histogram Distributions
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Tobias Hepp, Wolfgang Wuest, Rafael Heiss, Matthias Stefan May, Markus Kopp, Matthias Wetzl, Christoph Treutlein, Michael Uder, and Marco Wiesmueller
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apparent diffusion coefficient ,head and neck MRI ,multimodal imaging ,parotid gland tumor ,histogram analysis ,cross-validation techniques ,Medicine (General) ,R5-920 - Abstract
The aim of this study was to assess the diagnostic value of ADC distribution curves for differentiation between benign and malignant parotid gland tumors and to compare with mean ADC values. 73 patients with parotid gland tumors underwent head-and-neck MRI on a 1.5 Tesla scanner prior to surgery and histograms of ADC values were extracted. Histopathological results served as a reference standard for further analysis. ADC histograms were evaluated by comparing their similarity to a reference distribution using Chi2-test-statistics. The assumed reference distribution for benign and malignant parotid gland lesions was calculated after pooling the entire ADC data. In addition, mean ADC values were determined. For both methods, we calculated and compared the sensitivity and specificity between benign and malignant parotid gland tumors and three subgroups (pleomorphic adenoma, Warthin tumor, and malignant lesions), respectively. Moreover, we performed cross-validation (CV) techniques to estimate the predictive performance between ADC distributions and mean values. Histopathological results revealed 30 pleomorphic adenomas, 22 Warthin tumors, and 21 malignant tumors. ADC histogram distribution yielded a better specificity for detection of benign parotid gland lesions (ADChistogram: 75.0% vs. ADCmean: 71.2%), but mean ADC values provided a higher sensitivity (ADCmean: 71.4% vs. ADChistogram: 61.9%). The discrepancies are most pronounced in the differentiation between malignant and Warthin tumors (sensitivity ADCmean: 76.2% vs. ADChistogram: 61.9%; specificity ADChistogram: 81.8% vs. ADCmean: 68.2%). Using CV techniques, ADC distribution revealed consistently better accuracy to differentiate benign from malignant lesions (“leave-one-out CV” accuracy ADChistogram: 71.2% vs. ADCmean: 67.1%). ADC histogram analysis using full distribution curves is a promising new approach for differentiation between primary benign and malignant parotid gland tumors, especially with respect to the advantage in predictive performance based on CV techniques.
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- 2022
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14. Uncertainty-Based Biological Age Estimation of Brain MRI Scans.
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Karim Armanious, Sherif Abdulatif, Wenbin Shi, Tobias Hepp 0002, Sergios Gatidis, and Bin Yang 0009
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- 2021
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15. Uncertainty-Guided Progressive GANs for Medical Image Translation.
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Uddeshya Upadhyay, Yanbei Chen, Tobias Hepp 0002, Sergios Gatidis, and Zeynep Akata
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- 2021
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16. Organ-Based Chronological Age Estimation Based on 3D MRI Scans.
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Karim Armanious, Sherif Abdulatif, Anish Rao Bhaktharaguttu, Thomas Küstner, Tobias Hepp 0002, Sergios Gatidis, and Bin Yang 0009
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- 2020
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17. ipA-MedGAN: Inpainting of Arbitrary Regions in Medical Imaging.
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Karim Armanious, Vijeth Kumar, Sherif Abdulatif, Tobias Hepp 0002, Sergios Gatidis, and Bin Yang 0009
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- 2020
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18. Estimating uncertainty in read‐out patterns: Application to controls‐based denoising and voxel‐based morphometry patterns in neurodegenerative and neuropsychiatric diseases
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Dominik Blum, Tobias Hepp, Valdimir Belov, Roberto Goya‐Maldonado, Christian la Fougère, and Matthias Reimold
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Neurology ,Radiological and Ultrasound Technology ,Radiology, Nuclear Medicine and imaging ,Neurology (clinical) ,Anatomy - Published
- 2023
19. Conditional De-Identification of 3D Magnetic Resonance Images.
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Lennart Alexander Van der Goten, Tobias Hepp 0002, Zeynep Akata, and Kevin Smith
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- 2021
20. Die gesundheitsökonomische Evaluation der GLICEMIA 2.0-Studie als Beispiel für eine komplexe Intervention
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Cordula Forster, Katja Prax, Peter Jaensch, Sebastian Müller, Tobias Hepp, Helmut Schlager, Kristina Friedland, and Jürgen Zerth
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Public Health, Environmental and Occupational Health - Abstract
Zusammenfassung Hintergrund Im Rahmen der gesundheitsökonomischen Analyse wurde in einem Piggyback-Ansatz die Kosteneffektivität des am Point of Care Apotheke erbrachten Präventionsprogrammes der GLICEMIA 2.0-Studie evaluiert, das versuchte, die Teilnehmenden in der Interventionsgruppe zu einer verbesserten glykämischen Kontrolle bei Typ-2-Diabetes mit nachhaltiger Incentivierung von gesundheits-bewusstem Verhalten, therapeutischer Compliance und Adhärenz heranzuführen. Die Kontrollgruppe erhielt ein passives Medikationsmanagement und ein Monitoring zum Diabetes-Status. Methode Primärer Endpunkt der GLICEMIA 2.0-Studie war die Stabilisierung des HbA1c-Wertes. Zur gesundheitsökonomischen Auswertung wurden inkrementale Unterschiede in Output-Veränderungen untersucht, definiert als Differenz der Häufigkeitsverteilung der HbA1c-Werte zwischen den Gruppen im zeitlichen Verlauf. Als Kostenparameter wurden direkte Programmkosten und antizipierte indirekte Kosten der Inanspruchnahme ärztlicher Leistungen erfasst. Zur Validierung von Kosteneffektivitätsschwellen wurde über die Bildung von ICER-Werten ein Net-Monetary-Benefit-Ansatz herangezogen. Ergebnis Die Interventionsgruppe erreichte signifikant höhere Verbesserungen der HbA1c-Werte. Durch die vorgenommene Risikostratifizierung über den Anfangsmedian der HbA1c-Werte können Kosteneffektivitätspotenziale bei hohen HbA1c-Ausgangswertengezeigt werden. Aufgrund des Untersuchungszeitraums sind keine langfristigen Unterschiede in Inanspruchnahmen ärztlicher Leistungen ersichtlich. Schlussfolgerung Das GLICEMIA 2.0-Programm indiziert deutliche Effektivitätspotenziale besonders bei höheren Risikograden. Der Wirkeffekt scheint die Adhärenz der Interventions- im Vergleich zur Kontrollgruppe befördert zu haben. Eine Ermittlung der unmittelbaren Wirkungshebel der Gruppenintervention würde aufgrund des Charakters einer komplexen Intervention einen längeren Zeitraum benötigen. Aufgrund eines fehlenden Follow-up können über längerfristige Effekte nur eingeschränkte Aussagen getroffen werden.
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- 2022
21. Quantification of facial fat compartments variations according to gender, age and BMI: a 3-Dimensional morphometric analysis of the cheek
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Arne Estler, Gerd Grözinger, Eva Estler, Tobias Hepp, You-Shan Feng, Adrien Daigeler, A. Cristina S. R. G. Jorge, Adelana Santos Stahl, Konstantin Nikolaou, and Stéphane Stahl
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Surgery - Published
- 2023
22. Adaptive step-length selection in gradient boosting for Gaussian location and scale models
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Boyao Zhang, Tobias Hepp, Sonja Greven, and Elisabeth Bergherr
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Statistics and Probability ,Computational Mathematics ,Statistics, Probability and Uncertainty - Abstract
Tuning of model-based boosting algorithms relies mainly on the number of iterations, while the step-length is fixed at a predefined value. For complex models with several predictors such as Generalized additive models for location, scale and shape (GAMLSS), imbalanced updates of predictors, where some distribution parameters are updated more frequently than others, can be a problem that prevents some submodels to be appropriately fitted within a limited number of boosting iterations. We propose an approach using adaptive step-length (ASL) determination within a non-cyclical boosting algorithm for Gaussian location and scale models, as an important special case of the wider class of GAMLSS, to prevent such imbalance. Moreover, we discuss properties of the ASL and derive a semi-analytical form of the ASL that avoids manual selection of the search interval and numerical optimization to find the optimal step-length, and consequently improves computational efficiency. We show competitive behavior of the proposed approaches compared to penalized maximum likelihood and boosting with a fixed step-length for Gaussian location and scale models in two simulations and two applications, in particular for cases of large variance and/or more variables than observations. In addition, the underlying concept of the ASL is also applicable to the whole GAMLSS framework and to other models with more than one predictor like zero-inflated count models, and brings up insights into the choice of the reasonable defaults for the step-length in the simpler special case of (Gaussian) additive models.
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- 2022
23. Penalized Regression Splines in Mixture Density Networks
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Quentin Edward Seifert, Anton Thielmann, Elisabeth Bergherr, Benjamin Säfken, Jakob Zierk, Manfred Rauh, and Tobias Hepp
- Abstract
Mixture Density Networks (MDN) belong to a class of models that can be applied to data which cannot be sufficiently described by a single distribution since it originates from different components of the main unit and therefore needs to be described by a mixture of densities. In some situations, however, MDNs seem to have problems with the proper identification of the latent components. While these identification issues can to some extent be contained by using custom initialization strategies for the network weights, this solution is still less than ideal since it involves subjective opinions. We therefore suggest replacing the hidden layers between the model input and the output parameter vector of MDNs and estimating the respective distributional parameters with penalized cubic regression splines. Applying this approach to data from Gaussian mixture distributions as well gamma mixture distributions proved to be successful with the identification issues not playing a role anymore and the splines reliably converging to the true parameter values.
- Published
- 2022
24. Women-only versus mixed-gender groups in multimodal, day clinic treatment of trauma-related disorders
- Author
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Anke Philipps, Tobias Hepp, Andrea Silbermann, Eva Morawa, Mark Stemmler, and Yesim Erim
- Subjects
Stress Disorders, Post-Traumatic ,Psychotherapy ,Treatment Outcome ,Humans ,Female ,General Medicine ,Somatoform Disorders ,Combined Modality Therapy - Abstract
Zusammenfassung
- Published
- 2022
25. [The Economic Evaluation of the GLICEMIA 2.0 Study as an Example of a Complex Intervention]
- Author
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Cordula, Forster, Katja, Prax, Peter, Jaensch, Sebastian, Müller, Tobias, Hepp, Helmut, Schlager, Kristina, Friedland, and Jürgen, Zerth
- Subjects
Diabetes Mellitus, Type 2 ,Research Design ,Cost-Benefit Analysis ,Germany ,Humans ,Social Group - Abstract
A piggyback approach was used to evaluate the cost-effectiveness of the prevention program delivered at the point of care pharmacy in the GLICEMIA 2.0 study that sought to guide participants in the intervention group to improved glycemic control in type 2 diabetes with sustained incentivization of lifestyle changes, therapeutic compliance, and adherence. The control group received passive medication management and monitoring.Primary endpoint of the GLICEMIA 2.0 study was the stabilization of HbA1c values. For health economic evaluation, incremental differences in output changes were examined, defined as the difference in the distribution of the HbA1c values between both groups over time. Direct program costs and anticipated indirect costs of service utilization were used as cost parameters. A net monetary benefit approach was used to validate cost-effectiveness thresholds via the formation of ICER values.The intervention group had significantly higher reductions in HbAThe GLICEMIA program indicates considerable effectiveness potentials, especially for high-risk patients. The study design seems to have assisted the intervention group's adherence in contrast to the control group. Detailed impacts within the complex intervention could not be validated due to restrictions of the study design as a complex intervention. Overall, statements about effect sustainability and further utilization rates progressions are limited due to a lack of follow-up.Im Rahmen der gesundheitsökonomischen Analyse wurde in einem Piggyback-Ansatz die Kosteneffektivität des am Point of Care Apotheke erbrachten Präventionsprogrammes der GLICEMIA 2.0-Studie evaluiert, das versuchte, die Teilnehmenden in der Interventionsgruppe zu einer verbesserten glykämischen Kontrolle bei Typ-2-Diabetes mit nachhaltiger Incentivierung von gesundheits-bewusstem Verhalten, therapeutischer Compliance und Adhärenz heranzuführen. Die Kontrollgruppe erhielt ein passives Medikationsmanagement und ein Monitoring zum Diabetes-Status.Primärer Endpunkt der GLICEMIA 2.0-Studie war die Stabilisierung des HbADie Interventionsgruppe erreichte signifikant höhere Verbesserungen der HbADas GLICEMIA 2.0-Programm indiziert deutliche Effektivitätspotenziale besonders bei höheren Risikograden. Der Wirkeffekt scheint die Adhärenz der Interventions- im Vergleich zur Kontrollgruppe befördert zu haben. Eine Ermittlung der unmittelbaren Wirkungshebel der Gruppenintervention würde aufgrund des Charakters einer komplexen Intervention einen längeren Zeitraum benötigen. Aufgrund eines fehlenden Follow-up können über längerfristige Effekte nur eingeschränkte Aussagen getroffen werden.
- Published
- 2022
26. Interleukin-6 secretion upon acute psychosocial stress as a potential predictor of psychotherapy outcome in posttraumatic stress disorder
- Author
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Cosima Rhein, Nicolas Rohleder, Olga Kraus, Kristin von Majewski, Tobias Hepp, Marietta Lieb, and Yesim Erim
- Subjects
0301 basic medicine ,Oncology ,medicine.medical_specialty ,Neurology ,Stress Disorders, Post-Traumatic ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Intervention (counseling) ,Blood plasma ,medicine ,Trier social stress test ,Humans ,Secretion ,Interleukin 6 ,Biological Psychiatry ,biology ,Interleukin-6 ,business.industry ,Psychotherapy ,Psychiatry and Mental health ,Posttraumatic stress ,030104 developmental biology ,biology.protein ,Cytokines ,Cytokine secretion ,Neurology (clinical) ,business ,Stress, Psychological ,030217 neurology & neurosurgery - Abstract
Posttraumatic stress disorder (PTSD) is a severe mental disorder that can develop after a traumatic event. PTSD has been reported to be associated with activation of the innate immune system, as measured by increased levels of pro-inflammatory cytokines. While it is well known that PTSD patients display increased levels of interleukin 6 (IL-6) when compared with healthy controls, the relationship between cytokine secretion and treatment outcome has been hardly investigated yet. The aim of this study was to assess the potential association of inflammatory activation and therapy outcome in PTSD. Before therapeutic intervention, we applied the Trier Social Stress Test (TSST) as a method to elicit psychosocial stress and an acute inflammatory response. IL-6 levels were measured in blood plasma of PTSD patients at different time points before and after the TSST. Severity of depressive, trauma-related, and somatic symptoms was assessed before and 8 weeks after trauma-focused treatment in a multimodal day clinic setting. We showed that high reactivity of IL-6 to psychosocial stress at the beginning of the therapy was associated with a negative therapy outcome in PTSD, especially regarding depressive symptoms. This study suggests plasma IL-6 reactivity as a potential molecular marker to predict treatment outcome in PTSD.
- Published
- 2021
27. Self-supervised contrastive learning with random walks for medical image segmentation with limited annotations
- Author
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Marc Fischer, Tobias Hepp, Sergios Gatidis, and Bin Yang
- Subjects
Radiological and Ultrasound Technology ,Health Informatics ,Radiology, Nuclear Medicine and imaging ,Computer Vision and Pattern Recognition ,Computer Graphics and Computer-Aided Design - Published
- 2023
28. A Taxonomy for Psycho-Oncological Intervention Techniques in an Acute Care Hospital in Germany
- Author
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Yesim Erim, Marietta Lieb, Tobias Hepp, Martina Madl, and Katharina Schieber
- Subjects
Cancer Research ,medicine.medical_specialty ,business.industry ,Psycho-Oncology ,Psychological intervention ,Reproducibility of Results ,Hematology ,Certification ,Disease cluster ,Superordinate goals ,Hospitals ,Inter-rater reliability ,Oncology ,Germany ,Neoplasms ,Family medicine ,Acute care ,Taxonomy (general) ,Intervention (counseling) ,medicine ,Humans ,business - Abstract
Background: Due to the establishment of a nationwide certification system for cancer centers in Germany, the availability of psycho-oncological services for cancer patients has increased substantially. However, little is known about the specific intervention techniques that are applied during sessions in an acute care hospital, since a standardized taxonomy is lacking. With this study, we aimed at the investigation of psycho-oncological intervention techniques and the development of a comprehensive and structured taxonomy thereof. Methods: In a stepwise procedure, a team of psycho-oncologists generated a data pool of interventions and definitions that were tested in clinical practice during a pilot phase. After an adaptation of intervention techniques, interrater reliability (IRR) was attained by rating 10 previously recorded psycho-oncological sessions. A classification of interventions into superordinate categories was performed, supported by cluster analysis. Results: Between April and June 2017, 980 psycho-oncological sessions took place. The experts agreed on a total number of 22 intervention techniques. An IRR of 89% for 2 independent psycho-oncological raters was reached. The 22 techniques were classified into 5 superordinate categories. Discussion/Conclusion: We developed a comprehensive and structured taxonomy of psycho-oncological intervention techniques in an acute care hospital that provides a standardized basis for systematic research and applied care. We expect our work to be continuously subjected to further development: future research should evaluate and expand our taxonomy to other contexts and care settings.
- Published
- 2021
29. Influence of Artifact Corrections on MRI Signal Intensity Ratios for Assessment of Gadolinium Brain Retention
- Author
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Michael Uder, Marc Saake, Alexandra Schmidle, Rafael Heiss, Tobias Bäuerle, Wolfgang Wuest, Tobias Hepp, and Arnd Doerfler
- Subjects
Gadolinium DTPA ,Gadolinium ,Contrast Media ,chemistry.chemical_element ,Iterative reconstruction ,Globus Pallidus ,030218 nuclear medicine & medical imaging ,Gadobutrol ,03 medical and health sciences ,0302 clinical medicine ,Organometallic Compounds ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Prospective Studies ,Prospective cohort study ,Retrospective Studies ,Artifact (error) ,medicine.diagnostic_test ,business.industry ,Brain ,Magnetic resonance imaging ,Magnetic Resonance Imaging ,Intensity (physics) ,Cerebellar Nuclei ,chemistry ,030220 oncology & carcinogenesis ,Signal intensity ,Artifacts ,business ,Nuclear medicine ,medicine.drug - Abstract
Differences in brain signal intensity ratios (SIRs) of deep brain nuclei in T1-weighted (T1w) magnetic resonance images were reported as an indicator of gadolinium brain retention. Variable methods of image reconstruction and inhomogeneity correction for T1w images exist, which might affect the accuracy of SIRs. The aim of our prospective study was to investigate the effect of flow artifact compensation (FAC) and intensity inhomogeneity correction (IIC) on the dentate nucleus-to-pons and globus pallidus-to-thalamus SIRs in study participants who had previously received multiple doses of gadobutrol.This study included 76 participants who received five or more gadobutrol-enhanced scans between 2007 and 2017. A control group of 25 participants without gadolinium-based contrast agent application in their patient history was included for comparison. Unenhanced brain magnetic resonance imaging including two T1w spin-echo sequences with and without FAC was performed in all participants. Both sequences were reconstructed with and without IIC. Images were assessed for flow artifacts and SIRs were calculated.Using FAC, a lower proportion of participants had to be excluded from the final analysis of dentate nucleus-to-pons SIR due to flow artifacts (15% versus 46%, p0.001). Without IIC, a difference was found between the study and the control group for the dentate nucleus-to-pons ratio (p = 0.004), but not for the same sequence reconstructed with IIC (p = 0.29). For the globus pallidus-to-thalamus ratio, no difference was found between the study and control group.The application of an IIC algorithm has significant impact on brain nuclei SIRs for the assessment of gadolinium brain retention.
- Published
- 2020
30. Complementary role of computed tomography texture analysis for differentiation of pancreatic ductal adenocarcinoma from pancreatic neuroendocrine tumors in the portal-venous enhancement phase
- Author
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Michael Bitzer, Karolin Baumgartner, Christian Philipp Reinert, Tobias Hepp, and Marius Horger
- Subjects
Male ,medicine.medical_specialty ,Pancreatic ductal adenocarcinoma ,Urology ,Contrast Media ,X-ray computed ,Computed tomography ,Neuroendocrine tumors ,Diagnosis, Differential ,Text mining ,Internal medicine ,Parenchyma ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Pancreas ,Tomography ,Aged ,Neoplasm Staging ,Retrospective Studies ,Radiological and Ultrasound Technology ,medicine.diagnostic_test ,Portal Vein ,business.industry ,Gastroenterology ,Correction ,Hepatology ,medicine.disease ,Pancreatic Neoplasms ,Pancreatic Neuroendocrine Neoplasm ,Neuroendocrine Tumors ,medicine.anatomical_structure ,Radiographic Image Interpretation, Computer-Assisted ,Female ,Tomography, X-Ray Computed ,business ,Nuclear medicine ,Carcinoma, Pancreatic Ductal - Abstract
Purpose To assess the role of CT-texture analysis (CTTA) for differentiation of pancreatic ductal adenocarcinoma (PDAC) from pancreatic neuroendocrine neoplasm (PNEN) in the portal-venous phase as compared with visual assessment and tumor-to-pancreas attenuation ratios. Methods 53 patients (66.1 ± 8.6y) with PDAC and 42 patients (65.5 ± 12.2y) with PNEN who underwent contrast-enhanced CT for primary staging were evaluated. Volumes of interests (VOIs) were set in the tumor tissue at the portal-venous phase excluding adjacent structures. Based on pyradiomics library, 92 textural features were extracted including 1st, 2nd, and higher order features, and then compared between PNEN and PDAC. The visual assessment classified tumors into hypo-, iso-, or hyperdense to pancreas parenchyma or into homogeneous/heterogeneous. Additionally, attenuation ratios between the tumors and the non-involved pancreas were calculated. Results 8/92 (8.6%) highly significant (p p Conclusions Our data indicate that CTTA is a feasible tool for differentiation of PNEN from PDAC and also of G1 from G2/3 PNEN in the portal-venous phase. Visual assessment and tumor-to-parenchyma ratios were not useful for discrimination.
- Published
- 2020
31. Multiparametric Oncologic Hybrid Imaging: Machine Learning Challenges and Opportunities
- Author
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Thomas Küstner, Tobias Hepp, and Ferdinand Seith
- Subjects
Machine Learning ,Positron-Emission Tomography ,Image Processing, Computer-Assisted ,Radiology, Nuclear Medicine and imaging ,Nuclear Medicine ,Artifacts ,Magnetic Resonance Imaging - Abstract
Machine learning (ML) is considered an important technology for future data analysis in health care.The inherently technology-driven fields of diagnostic radiology and nuclear medicine will both benefit from ML in terms of image acquisition and reconstruction. Within the next few years, this will lead to accelerated image acquisition, improved image quality, a reduction of motion artifacts and - for PET imaging - reduced radiation exposure and new approaches for attenuation correction. Furthermore, ML has the potential to support decision making by a combined analysis of data derived from different modalities, especially in oncology. In this context, we see great potential for ML in multiparametric hybrid imaging and the development of imaging biomarkers.In this review, we will describe the basics of ML, present approaches in hybrid imaging of MRI, CT, and PET, and discuss the specific challenges associated with it and the steps ahead to make ML a diagnostic and clinical tool in the future.· ML provides a viable clinical solution for the reconstruction, processing, and analysis of hybrid imaging obtained from MRI, CT, and PET..· Küstner T, Hepp T, Seith F. Multiparametric Oncologic Hybrid Imaging: Machine Learning Challenges and Opportunities. Fortschr Röntgenstr 2022; 194: 605 - 612.Maschinelles Lernen (ML) gilt als eine wichtige Technologie für die zukünftige Datenanalyse im Gesundheitswesen.Die inhärent technologiegetriebene diagnostische Radiologie und Nuklearmedizin werden sowohl bei der Bildaufnahme als auch bei der Bildrekonstruktion von ML profitieren. In den nächsten Jahren wird dies zu einer beschleunigten Bildaufnahme, einer verbesserten Bildqualität, einer Reduzierung von Bewegungsartefakten und – für die PET-Bildgebung – zu einer reduzierten Strahlenexposition und neuen Ansätzen zur Schwächungskorrektur führen. Darüber hinaus hat ML das Potenzial, die Entscheidungsfindung durch eine kombinierte Analyse von Daten aus verschiedenen Modalitäten, insbesondere im Bereich der Onkologie, zu unterstützen. In diesem Zusammenhang sehen wir ein großes Potenzial für ML in der multiparametrischen Hybrid-Bildgebung und der Entwicklung von bildgebenden Biomarkern.In diesem Review werden wir die Grundlagen von ML beschreiben, Ansätze in der hybriden Bildgebung von MRT, CT und PET vorstellen und die damit verbundenen spezifischen Herausforderungen und die kommenden Schritte diskutieren, um ML in Zukunft zu einem diagnostischen und klinischen Werkzeug zu machen.· ML bietet eine praktikable klinische Lösung für die Rekonstruktion, Verarbeitung und Analyse von Hybrid-Bildgebung der MRT, CT und PET..
- Published
- 2022
32. Mixture Density Networks for the Indirect Estimation of Reference Intervals
- Author
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Tobias, Hepp, Jakob, Zierk, Manfred, Rauh, Markus, Metzler, and Sarem, Seitz
- Subjects
Hemoglobins ,Reference Values ,Structural Biology ,Applied Mathematics ,Humans ,Prospective Studies ,ddc:610 ,Child ,Molecular Biology ,Biochemistry ,Computer Science Applications - Abstract
Background Reference intervals represent the expected range of physiological test results in a healthy population and are essential to support medical decision making. Particularly in the context of pediatric reference intervals, where recruitment regulations make prospective studies challenging to conduct, indirect estimation strategies are becoming increasingly important. Established indirect methods enable robust identification of the distribution of “healthy” samples from laboratory databases, which include unlabeled pathologic cases, but are currently severely limited when adjusting for essential patient characteristics such as age. Here, we propose the use of mixture density networks (MDN) to overcome this problem and model all parameters of the mixture distribution in a single step. Results Estimated reference intervals from varying settings with simulated data demonstrate the ability to accurately estimate latent distributions from unlabeled data using different implementations of MDNs. Comparing the performance with alternative estimation approaches further highlights the importance of modeling the mixture component weights as a function of the input in order to avoid biased estimates for all other parameters and the resulting reference intervals. We also provide a strategy to generate partially customized starting weights to improve proper identification of the latent components. Finally, the application on real-world hemoglobin samples provides results in line with current gold standard approaches, but also suggests further investigations with respect to adequate regularization strategies in order to prevent overfitting the data. Conclusions Mixture density networks provide a promising approach capable of extracting the distribution of healthy samples from unlabeled laboratory databases while simultaneously and explicitly estimating all parameters and component weights as non-linear functions of the covariate(s), thereby allowing the estimation of age-dependent reference intervals in a single step. Further studies on model regularization and asymmetric component distributions are warranted to consolidate our findings and expand the scope of applications.
- Published
- 2022
33. Weakly supervised segmentation of tumor lesions in PET-CT hybrid imaging
- Author
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Tobias Hepp, Marcel Früh, Andreas Schilling, Marc Fischer, and Sergios Gatidis
- Subjects
PET-CT ,medicine.diagnostic_test ,Artificial neural network ,Contextual image classification ,business.industry ,Deep learning ,Pattern recognition ,Image segmentation ,Positron emission tomography ,medicine ,Radiology, Nuclear Medicine and imaging ,Segmentation ,Artificial intelligence ,Tomography ,business - Abstract
Purpose: We introduce and evaluate deep learning methods for weakly supervised segmentation of tumor lesions in whole-body fluorodeoxyglucose-positron emission tomography (FDG-PET) based solely on binary global labels ("tumor" versus "no tumor"). Approach: We propose a three-step approach based on (i) a deep learning framework for image classification, (ii) subsequent generation of class activation maps (CAMs) using different CAM methods (CAM, GradCAM, GradCAM++, ScoreCAM), and (iii) final tumor segmentation based on the aforementioned CAMs. A VGG-based classification neural network was trained to distinguish between PET image slices with and without FDG-avid tumor lesions. Subsequently, the CAMs of this network were used to identify the tumor regions within images. This proposed framework was applied to FDG-PET/CT data of 453 oncological patients with available manually generated ground-truth segmentations. Quantitative segmentation performance was assessed for the different CAM approaches and compared with the manual ground truth segmentation and with supervised segmentation methods. In addition, further biomarkers (MTV and TLG) were extracted from the segmentation masks. Results: A weakly supervised segmentation of tumor lesions was feasible with satisfactory performance [best median Dice score 0.47, interquartile range (IQR) 0.35] compared with a fully supervised U-Net model (median Dice score 0.72, IQR 0.36) and a simple threshold based segmentation (Dice score 0.29, IQR 0.28). CAM, GradCAM++, and ScoreCAM yielded similar results. However, GradCAM led to inferior results (median Dice score: 0.12, IQR 0.21) and was likely to ignore multiple instances within a given slice. CAM, GradCAM++, and ScoreCAM yielded accurate estimates of metabolic tumor volume (MTV) and tumor lesion glycolysis. Again, worse results were observed for GradCAM. Conclusions: This work demonstrated the feasibility of weakly supervised segmentation of tumor lesions and accurate estimation of derived metrics such as MTV and tumor lesion glycolysis.
- Published
- 2021
34. T2 mapping for the characterization of prostate lesions
- Author
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Tobias Hepp, Laura Kalmbach, Manuel Kolb, Petros Martirosian, Tom Hilbert, Wolfgang M. Thaiss, Mike Notohamiprodjo, Jens Bedke, Konstantin Nikolaou, Arnulf Stenzl, Stephan Kruck, and Sascha Kaufmann
- Subjects
Image-Guided Biopsy ,Male ,fusion ,Urology ,t2 mapping ,Prostate ,Prostatic Neoplasms ,multiparametric mri ,prostate cancer ,Magnetic Resonance Imaging ,Prostatitis ,body regions ,Cohort Studies ,Diffusion Magnetic Resonance Imaging ,peripheral zone ,cancer ,Humans ,biopsy ,performance ,Retrospective Studies - Abstract
Purpose Purpose of this study is to evaluate the diagnostic accuracy of quantitative T2/ADC values in differentiating between PCa and lesions showing non-specific inflammatory infiltrates and atrophy, features of chronic prostatitis, as the most common histologically proven differential diagnosis. Methods In this retrospective, single-center cohort study, we analyzed 55 patients suspected of PCa, who underwent mpMRI (3T) including quantitative T2 maps before robot-assisted mpMRI-TRUS fusion prostate biopsy. All prostate lesions were scored according to PI-RADS v2.1. Regions of interest (ROIs) were annotated in focal lesions and normal prostate tissue. Quantitative mpMRI values from T2 mapping and ADC were compared using two-tailed t tests. Receiver operating characteristic curves (ROCs) and cutoff were calculated to differentiate between PCa and chronic prostatitis. Results Focal lesions showed significantly lower ADC and T2 mapping values than normal prostate tissue (p p r = 0.70; p Conclusion T2 mapping showed high diagnostic accuracy for differentiating between PCa and chronic prostatitis, comparable to the performance of ADC values.
- Published
- 2021
35. Head-to-head comparison of biparametric versus multiparametric MRI of the prostate before robot-assisted transperineal fusion prostate biopsy
- Author
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Wolfgang M. Thaiss, Simone Moser, Tobias Hepp, Stephan Kruck, Steffen Rausch, Marcus Scharpf, Konstantin Nikolaou, Arnulf Stenzl, Jens Bedke, and Sascha Kaufmann
- Subjects
Image-Guided Biopsy ,Male ,Urology ,Biopsy ,Prostate ,Contrast Media ,Humans ,Prostatic Neoplasms ,Robotics ,Multiparametric Magnetic Resonance Imaging ,Prostate-Specific Antigen ,Magnetic Resonance Imaging ,Retrospective Studies - Abstract
Purpose Prostate biparametric magnetic resonance imaging (bpMRI) including T2-weighted imaging (T2WI) and diffusion-weighted imaging (DWI) might be an alternative to multiparametric MRI (mpMRI, including dynamic contrast imaging, DCE) to detect and guide targeted biopsy in patients with suspected prostate cancer (PCa). However, there is no upgrading peripheral zone PI-RADS 3 to PI-RADS 4 without DCE in bpMRI. The aim of this study was to evaluate bpMRI against mpMRI in biopsy-naïve men with elevated prostate-specific antigen (PSA) scheduled for robot-assisted-transperineal fusion-prostate biopsy (RA-TB). Methods Retrospective single-center-study of 563 biopsy-naïve men (from 01/2015 to 09/2018, mean PSA 9.7 ± 6.5 ng/mL) with PI-RADSv2.1 conform mpMRI at 3 T before RA-TB. Clinically significant prostate cancer (csPCa) was defined as ISUP grade ≥ 2 in any core. Two experienced readers independently evaluated images according to PI-RADSv2.1 criteria (separate readings for bpMRI and mpMRI sequences, 6-month interval). Reference standard was histology from RA-TB. Results PI-RADS 2 was scored in 5.1% of cases (3.4% cancer/3.4% csPCa), PI-RADS 3 in 16.9% (32.6%/3.2%), PI-RADS 4 in 57.6% (66.1%/58.3%) and PI-RADS 5 in 20.4% of cases (79.1%/74.8%). For mpMRI/bpMRI test comparison, sensitivity was 99.0%/97.1% (p p p Conclusion In patients planned for RA-TB with elevated PSA and clinical suspicion for PCa, specificity was higher in bpMRI vs. mpMRI, which could solve constrains regarding time and contrast agent.
- Published
- 2021
36. Use of Cone-Beam Computed Tomography (CBCT) for Targeting the Portal Vein in Transjugular Intrahepatic Portosystemic Shunt (TIPS) Procedures: Comparison of Low-Dose with Standard-Dose CBCT
- Author
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Ruediger Hoffmann, Ulrike Schempf, Arne Estler, Ferdinand Seith, Gerd Groezinger, Judith Herrmann, Christoph Artzner, Tobias Hepp, Ulrich Grosse, and Konstantin Nikolaou
- Subjects
Cone beam computed tomography ,business.industry ,Image quality ,medicine.medical_treatment ,Low dose ,Portal vein ,respiratory system ,urologic and male genital diseases ,equipment and supplies ,medicine.disease ,stomatognathic system ,Dose area product ,medicine ,Portal hypertension ,Radiology, Nuclear Medicine and imaging ,Hepatic portal vein ,Nuclear medicine ,business ,Transjugular intrahepatic portosystemic shunt - Abstract
Background: A transjugular intrahepatic portosystemic shunt (TIPS) is a common treatment for patients with portal hypertension. In these patients, the portal vein can be punctured under the guidance of cone-beam computed tomography (CBCT). Objectives: To compare standard-dose (SD) CBCT with low-dose (LD) CBCT, as three-dimensional (3D) intraprocedural guidance for transhepatic puncture in TIPS placement, in terms of image quality, radiation dose, technical success, and complications. Patients and Methods: A total of 44 patients were retrospectively enrolled in this study. Eighteen patients underwent LD-CBCT, while 26 patients underwent SD-CBCT for guiding the portal vein puncture. A quantitative assessment of image quality was performed by calculating the contrast-to-noise ratio (CNR) of the hepatic portal vein. This analysis was based on a five-point vascular visualization scale (VVS), ranging from optimal (score = 1) to non-diagnostic (score = 5), while a three-point Likert scale was used for motion artifacts (1 = no motion artifacts, 3 = blurred). Image streak artifacts were also rated from one to three, based on the image quality results. Technical success was also investigated, including the number of puncture attempts, time to successful portal vein access, and radiation dose of the TIPS procedure. Results: Based on the results, TIPS could be placed successfully in all cases. Neither VVS (LD-CBCT VVS: 2.78, SD-CBCT VVS: 2.54; P = 0.467), nor the procedure time showed any significant differences between the groups (LD-CBCT: 48.3 min, SD-CBCT: 40.2 min; P = 0.45). Moreover, the objective evaluation of image quality indicated the lower quality of LD-CBCT images; however, the difference was not statistically significant (LD-CBCT CNR: 1.1 ± 0.76, SD-CBCT CNR: 1.3 ± 1.1; P = 0.5). The median number of puncture attempts was the same for SD-CBCT and LD-CBCT (n = 3; range: 1 - 6). Also, the mean dose area product (DAP) was significantly lower in LD-CBCT as compared to SD-CBCT (LD-CBCT: 2733 ± 848 µGm2, SD-CBCT: 6119 ± 1677 µGm2; P < 0.0001). The total DAP was significantly lower using LD-CBCT (LD-CBCT: 14831 ± 9299 µGm2, SD-CBCT: 20985 ± 10127 µGm2; P = 0.047). Conclusion: Both SD-CBCT and LD-CBCT provided successful 3D guidance for portal vein puncture during TIPS creation. Although these methods did not differ significantly in terms of image quality, complications, or number of puncture attempts, LD-CBCT significantly reduced the radiation dose.
- Published
- 2021
37. Peribiliäre Zysten
- Author
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Yu-Xiang Ye, Tobias Hepp, Michael Bitzer, and Marius Horger
- Subjects
Radiology, Nuclear Medicine and imaging - Published
- 2019
38. Efficacy and tolerability of chemosaturation in patients with hepatic metastases from uveal melanoma
- Author
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Michael Bitzer, Andrea Forschner, Thomas Eigentler, Arne Estler, Tobias Hepp, Christoph Artzner, Gerd Grözinger, Florian Hagen, Rüdiger Hoffmann, and Konstantin Nikolaou
- Subjects
Oncology ,Adult ,Male ,Uveal Neoplasms ,medicine.medical_specialty ,Tumor response ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Overall survival ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,In patient ,Antineoplastic Agents, Alkylating ,Melanoma ,Melphalan ,Tumor Load ,Aged ,Aged, 80 and over ,Radiological and Ultrasound Technology ,business.industry ,Liver Neoplasms ,Neoplasms, Second Primary ,General Medicine ,Middle Aged ,medicine.disease ,Tolerability ,030220 oncology & carcinogenesis ,Chemotherapy, Cancer, Regional Perfusion ,Female ,business - Abstract
Background Patients with hepatic metastatic uveal melanoma still have a poor outcome. Purpose To evaluate overall survival (OS), progression-free survival (PFS), and response predictors in these patients treated with chemosaturation by percutaneous hepatic perfusion with melphalan (CS-PHP). Material and Methods Between June 2015 and March 2020, a total of 29 patients (median age 69.7 years; age range 30–81 years; 60% women; median BMI 25.7 kg/m2; range 18.7–35.3kg/m2; 1–6 procedures per patient) were treated with 53 CS-PHPs. All patients received cross-sectional imaging for initial and follow-up examinations. Baseline tumor load, extrahepatic tumor load, tumor response, PFS, and OS were assessed. Non-parametric statistics were used. Results After the initial CS-PHP, a partial response was observed in 11 patients (41%), stable disease in 12 patients (44%) and progressive disease in 4 patients (15%); two patients died before the response was evaluated. After initial CS-PHP, median OS was 12.9 ± 7.4 months and median PFS was 7.1 ± 7.4 months. OS after one year was 50%. After the second CS-PHP, median PFS was 7.9 ± 5.7 months. Seven patients had a liver tumor burden >25%, associated with a significantly shorter OS (6.0 ± 2.4 vs. 14.1 ± 12.7 months; P = 0.008). At the time of first CS-PHP, 41% (12/29) of the patients had extrahepatic metastases that did not affect OS (11.1 ± 8.4 months vs. 12.9 ± 13.6 months; P = 0.66). Conclusion CS-PHP is a safe and effective treatment for the hepatic metastatic uveal melanoma, especially for patients with a hepatic tumor burden
- Published
- 2021
39. mRNA Expression of SMPD1 Encoding Acid Sphingomyelinase Decreases upon Antidepressant Treatment
- Author
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Cosima Rhein, Iulia Zoicas, Lena M. Marx, Stefanie Zeitler, Tobias Hepp, Claudia von Zimmermann, Christiane Mühle, Tanja Richter-Schmidinger, Bernd Lenz, Yesim Erim, Martin Reichel, Erich Gulbins, and Johannes Kornhuber
- Subjects
SMPD1 ,major depressive disorder ,QH301-705.5 ,Medizin ,fluoxetine ,amitriptyline ,Chemistry ,antidepressants ,biomarker ,ddc:610 ,Biology (General) ,acid sphingomyelinase ,FIASMA ,QD1-999 - Abstract
Major depressive disorder (MDD) is a severe psychiatric condition with key symptoms of low mood and lack of motivation, joy, and pleasure. Recently, the acid sphingomyelinase (ASM)/ceramide system has been implicated in the pathogenesis of MDD. ASM is a lysosomal glycoprotein that catalyzes the hydrolysis of sphingomyelin, an abundant component of membranes, into the bioactive sphingolipid ceramide, which impacts signaling pathways. ASM activity is inhibited by several common antidepressant drugs. Human and murine studies have confirmed that increased ASM activity and ceramide levels are correlated with MDD. To define a molecular marker for treatment monitoring, we investigated the mRNA expression of SMPD1, which encodes ASM, in primary cell culture models, a mouse study, and a human study with untreated MDD patients before and after antidepressive treatment. Our cell culture study showed that a common antidepressant inhibited ASM activity at the enzymatic level and also at the transcriptional level. In a genetically modified mouse line with depressive-like behavior, Smpd1 mRNA expression in dorsal hippocampal tissue was significantly decreased after treatment with a common antidepressant. The large human study showed that SMPD1 mRNA expression in untreated MDD patients decreased significantly after antidepressive treatment. This translational study shows that SMPD1 mRNA expression could serve as a molecular marker for treatment and adherence monitoring of MDD.
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- 2021
40. Correction to: Complementary role of computed tomography texture analysis for differentiation of pancreatic ductal adenocarcinoma from pancreatic neuroendocrine tumors in the portal‑venous enhancement phase
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Christian Philipp Reinert, Karolin Baumgartner, Tobias Hepp, Michael Bitzer, and Marius Horger
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Radiological and Ultrasound Technology ,Urology ,Gastroenterology ,Radiology, Nuclear Medicine and imaging - Abstract
A correction to this paper has been published: https://doi.org/10.1007/s00261-021-03084-x
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- 2021
41. Deep Learning-Based Automated Abdominal Organ Segmentation in the UK Biobank and German National Cohort Magnetic Resonance Imaging Studies
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Daniel Rueckert, Sergios Gatidis, Marc Fischer, Turkay Kart, Stefan Winzeck, Tobias Hepp, Fabian Bamberg, Thomas Küstner, and Ben Glocker
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Ground truth ,medicine.diagnostic_test ,business.industry ,Computer science ,Deep learning ,Pattern recognition ,Magnetic resonance imaging ,General Medicine ,Image segmentation ,Biobank ,Magnetic Resonance Imaging ,United Kingdom ,National cohort ,Surface distance ,Deep Learning ,medicine ,Image Processing, Computer-Assisted ,Humans ,Radiology, Nuclear Medicine and imaging ,Segmentation ,Artificial intelligence ,business ,Biological Specimen Banks - Abstract
Purpose The aims of this study were to train and evaluate deep learning models for automated segmentation of abdominal organs in whole-body magnetic resonance (MR) images from the UK Biobank (UKBB) and German National Cohort (GNC) MR imaging studies and to make these models available to the scientific community for analysis of these data sets. Methods A total of 200 T1-weighted MR image data sets of healthy volunteers each from UKBB and GNC (400 data sets in total) were available in this study. Liver, spleen, left and right kidney, and pancreas were segmented manually on all 400 data sets, providing labeled ground truth data for training of a previously described U-Net-based deep learning framework for automated medical image segmentation (nnU-Net). The trained models were tested on all data sets using a 4-fold cross-validation scheme. Qualitative analysis of automated segmentation results was performed visually; performance metrics between automated and manual segmentation results were computed for quantitative analysis. In addition, interobserver segmentation variability between 2 human readers was assessed on a subset of the data. Results Automated abdominal organ segmentation was performed with high qualitative and quantitative accuracy on UKBB and GNC data. In more than 90% of data sets, no or only minor visually detectable qualitative segmentation errors occurred. Mean Dice scores of automated segmentations compared with manual reference segmentations were well higher than 0.9 for the liver, spleen, and kidneys on UKBB and GNC data and around 0.82 and 0.89 for the pancreas on UKBB and GNC data, respectively. Mean average symmetric surface distance was between 0.3 and 1.5 mm for the liver, spleen, and kidneys and between 2 and 2.2 mm for pancreas segmentation. The quantitative accuracy of automated segmentation was comparable with the agreement between 2 human readers for all organs on UKBB and GNC data. Conclusion Automated segmentation of abdominal organs is possible with high qualitative and quantitative accuracy on whole-body MR imaging data acquired as part of UKBB and GNC. The results obtained and deep learning models trained in this study can be used as a foundation for automated analysis of thousands of MR data sets of UKBB and GNC and thus contribute to tackling topical and original scientific questions.
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- 2021
42. Controls-based denoising (CODE): Evaluation anhand von T1-MRT von 3058 Patienten und Probanden und Erweiterung der Methode (gewichtete Muster nicht-pathologischer Varianz mit analytischer, regularisierbarer Lösung für die Optimalgewichte)
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Matthias Reimold, C la Fougère, Tobias Hepp, Dominik Blum, V Belov, and R Goya-Maldonaldo
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- 2021
43. mRNA Expression of
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Cosima, Rhein, Iulia, Zoicas, Lena M, Marx, Stefanie, Zeitler, Tobias, Hepp, Claudia, von Zimmermann, Christiane, Mühle, Tanja, Richter-Schmidinger, Bernd, Lenz, Yesim, Erim, Martin, Reichel, Erich, Gulbins, and Johannes, Kornhuber
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Depressive Disorder, Major ,Blood Cells ,major depressive disorder ,fluoxetine ,Gene Expression ,Mice, Transgenic ,amitriptyline ,Hippocampus ,Antidepressive Agents ,Article ,Disease Models, Animal ,Mice ,Sphingomyelin Phosphodiesterase ,Gene Expression Regulation ,Case-Control Studies ,antidepressants ,Animals ,Humans ,biomarker ,SMPD1 ,RNA, Messenger ,acid sphingomyelinase ,FIASMA ,Biomarkers ,Cells, Cultured - Abstract
Major depressive disorder (MDD) is a severe psychiatric condition with key symptoms of low mood and lack of motivation, joy, and pleasure. Recently, the acid sphingomyelinase (ASM)/ceramide system has been implicated in the pathogenesis of MDD. ASM is a lysosomal glycoprotein that catalyzes the hydrolysis of sphingomyelin, an abundant component of membranes, into the bioactive sphingolipid ceramide, which impacts signaling pathways. ASM activity is inhibited by several common antidepressant drugs. Human and murine studies have confirmed that increased ASM activity and ceramide levels are correlated with MDD. To define a molecular marker for treatment monitoring, we investigated the mRNA expression of SMPD1, which encodes ASM, in primary cell culture models, a mouse study, and a human study with untreated MDD patients before and after antidepressive treatment. Our cell culture study showed that a common antidepressant inhibited ASM activity at the enzymatic level and also at the transcriptional level. In a genetically modified mouse line with depressive-like behavior, Smpd1 mRNA expression in dorsal hippocampal tissue was significantly decreased after treatment with a common antidepressant. The large human study showed that SMPD1 mRNA expression in untreated MDD patients decreased significantly after antidepressive treatment. This translational study shows that SMPD1 mRNA expression could serve as a molecular marker for treatment and adherence monitoring of MDD.
- Published
- 2021
44. [Effects of the Covid-19 Restrictions on Supermarket Visits in Germany]
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Tobias, Hepp, Pia, Marquart, Christoph, Jauck, and Olaf, Gefeller
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Coronavirus ,Risk perception ,Behavior change ,SARS-CoV-2 ,Germany ,Communicable Disease Control ,COVID-19 ,Humans ,Originalarbeit ,Verhaltensanpassung ,Supermarkets ,Risikowahrnehmung - Abstract
The lockdown measures imposed in Germany starting in mid-March had a significant impact on public life. While the avoidance of social contacts was possible in many areas, the responsibility to provide themselves with food was placed in the hands of private households. To investigate whether and to what extent the restrictions led to changes regarding visits to supermarkets using cars. Data were available on the parking movements on 136 parking spaces of supermarkets in Germany between the beginning of February and the end of May. The analyses focused on changes in the total number of parking events per day and slot as well as their duration. Regarding the parking events, there was a clear reduction until the end of April, interrupted by an increase around Easter. After the introduction of mandatory masking, the values recovered to just below the level before lockdown. The duration changed relatively slightly. Initially it decreased, but later rose slightly above the level observed before the restrictions. Over the medium term, there was a slight reduction of parking events and an extension of their duration by a little more than 5%. Discussion Despite the explicit exclusion of food purchases from the lockdown measures, a dynamic adaptation behaviour of the population to the changing circumstances is also evident in this context. In terms of parking movements, a lasting effect on shopping behaviour seems unlikely. Die in Deutschland ab Mitte März verhängten Ausgangsbeschränkungen hinterließen in vielen Bereichen des öffentlichen Lebens deutliche Spuren. Während das Vermeiden sozialer Kontakte in vielen Bereichen durchaus möglich war, blieb die Versorgung mit Lebensmitteln der Verantwortung der privaten Haushalte überlassen. Die vorliegende Arbeit untersucht, ob und inwiefern die Beschränkungen zu Veränderungen hinsichtlich der Besuche von Supermärkten mit Personenkraftwagen geführt haben. Zur Verfügung stehen Daten über die Parkbewegungen von 136 Parkplätzen von Supermärkten in Deutschland zwischen Anfang Februar und Ende Mai. Im Fokus der Analysen stehen Veränderungen der Gesamtzahl an Parkvorgängen pro Tag und Stellplatz sowie deren Dauer. Mit Blick auf die Parkvorgänge zeigt sich eine deutliche Reduktion bis Ende April, unterbrochen durch einen temporären Anstieg um die Osterfeiertage. Nach Einführung der Maskenpflicht erholen sich die Werte wieder bis knapp unter das Vorniveau. Die Parkdauer verändert sich nur vergleichsweise wenig. Sie sinkt mit den Beschränkungen, steigt jedoch später leicht über das Niveau vor den Beschränkungen. Mittelfristig ist eine leichte Reduzierung der Parkvorgänge und eine Verlängerung ihrer Dauer um jeweils gut 5% zu beobachten. Trotz ausdrücklicher Ausnahme der Einkäufe von Lebensmitteln von den Ausgangsbeschränkungen zeigt sich auch in diesem Bereich ein dynamisches Anpassungsverhalten der Bevölkerung an die sich verändernden Gegebenheiten. Ein dauerhafter Effekt auf die Einkaufsgewohnheiten scheint gemessen an den Parkbewegungen unwahrscheinlich.
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- 2021
45. Auswirkungen der Ausgangsbeschränkungen im Zusammenhang mit Covid-19 auf Supermarktbesuche in Deutschland
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Christoph Jauck, Tobias Hepp, Pia Marquart, and Olaf Gefeller
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Gynecology ,03 medical and health sciences ,medicine.medical_specialty ,2019-20 coronavirus outbreak ,0302 clinical medicine ,Coronavirus disease 2019 (COVID-19) ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Political science ,medicine ,Public Health, Environmental and Occupational Health ,030217 neurology & neurosurgery ,030227 psychiatry - Abstract
Zusammenfassung Hintergrund Die in Deutschland ab Mitte März verhängten Ausgangsbeschränkungen hinterließen in vielen Bereichen des öffentlichen Lebens deutliche Spuren. Während das Vermeiden sozialer Kontakte in vielen Bereichen durchaus möglich war, blieb die Versorgung mit Lebensmitteln der Verantwortung der privaten Haushalte überlassen. Ziel der Arbeit Die vorliegende Arbeit untersucht, ob und inwiefern die Beschränkungen zu Veränderungen hinsichtlich der Besuche von Supermärkten mit Personenkraftwagen geführt haben. Material und Methoden Zur Verfügung stehen Daten über die Parkbewegungen von 136 Parkplätzen von Supermärkten in Deutschland zwischen Anfang Februar und Ende Mai. Im Fokus der Analysen stehen Veränderungen der Gesamtzahl an Parkvorgängen pro Tag und Stellplatz sowie deren Dauer. Ergebnisse Mit Blick auf die Parkvorgänge zeigt sich eine deutliche Reduktion bis Ende April, unterbrochen durch einen temporären Anstieg um die Osterfeiertage. Nach Einführung der Maskenpflicht erholen sich die Werte wieder bis knapp unter das Vorniveau. Die Parkdauer verändert sich nur vergleichsweise wenig. Sie sinkt mit den Beschränkungen, steigt jedoch später leicht über das Niveau vor den Beschränkungen. Mittelfristig ist eine leichte Reduzierung der Parkvorgänge und eine Verlängerung ihrer Dauer um jeweils gut 5% zu beobachten. Schlussfolgerung Trotz ausdrücklicher Ausnahme der Einkäufe von Lebensmitteln von den Ausgangsbeschränkungen zeigt sich auch in diesem Bereich ein dynamisches Anpassungsverhalten der Bevölkerung an die sich verändernden Gegebenheiten. Ein dauerhafter Effekt auf die Einkaufsgewohnheiten scheint gemessen an den Parkbewegungen unwahrscheinlich.
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- 2021
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46. Organ-Based Chronological Age Estimation Based on 3D MRI Scans
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Anish Rao Bhaktharaguttu, Sergios Gatidis, Sherif Abdulatif, Bin Yang, Karim Armanious, Tobias Hepp, and Thomas Küstner
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FOS: Computer and information sciences ,Computer Science - Machine Learning ,Process (engineering) ,Computer science ,Computer Vision and Pattern Recognition (cs.CV) ,Computer Science - Computer Vision and Pattern Recognition ,02 engineering and technology ,Convolutional neural network ,Machine Learning (cs.LG) ,FOS: Electrical engineering, electronic engineering, information engineering ,0202 electrical engineering, electronic engineering, information engineering ,medicine ,Medical history ,Estimation ,medicine.diagnostic_test ,business.industry ,Deep learning ,Image and Video Processing (eess.IV) ,020206 networking & telecommunications ,Magnetic resonance imaging ,Pattern recognition ,Chronological age ,Electrical Engineering and Systems Science - Image and Video Processing ,Regression ,Ageing ,Task analysis ,020201 artificial intelligence & image processing ,Artificial intelligence ,business - Abstract
Individuals age differently depending on a multitude of different factors such as lifestyle, medical history and genetics. Often, the global chronological age is not indicative of the true ageing process. An organ-based age estimation would yield a more accurate health state assessment. In this work, we propose a new deep learning architecture for organ-based age estimation based on magnetic resonance images (MRI). The proposed network is a 3D convolutional neural network (CNN) with increased depth and width made possible by the hybrid utilization of inception and fire modules. We apply the proposed framework for the tasks of brain and knee age estimation. Quantitative comparisons against concurrent MR-based regression networks and different 2D and 3D data feeding strategies illustrated the superior performance of the proposed work., Submitted to IEEE EUSIPCO 2020
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- 2021
47. Uncertainty estimation and explainability in deep learning-based age estimation of the human brain: Results from the German National Cohort MRI study
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Dominik Blum, Bin Yang, Darko Stern, Karim Armanious, Sergios Gatidis, Tobias Hepp, and Bernhard Schölkopf
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Adult ,Internal capsule ,Population ,Health Informatics ,Convolutional neural network ,Cohort Studies ,Young Adult ,Deep Learning ,medicine ,Image Processing, Computer-Assisted ,Humans ,Radiology, Nuclear Medicine and imaging ,education ,Aged ,Estimation ,education.field_of_study ,Radiological and Ultrasound Technology ,business.industry ,Deep learning ,Uncertainty ,Brain ,Infant ,Regression analysis ,Human brain ,Middle Aged ,Computer Graphics and Computer-Aided Design ,Magnetic Resonance Imaging ,Lobe ,medicine.anatomical_structure ,Child, Preschool ,Computer Vision and Pattern Recognition ,Artificial intelligence ,Psychology ,business ,Cartography - Abstract
Brain ageing is a complex neurobiological process associated with morphological changes that can be assessed on MRI scans. Recently, Deep learning (DL)-based approaches have been proposed for the prediction of chronological brain age from MR images yielding high accuracy. These approaches, however, usually do not address quantification of uncertainty and, therefore, intrinsic physiological variability. Considering uncertainty is essential for the interpretation of the difference between predicted and chronological age. In addition, DL-based models lack in explainability compared to classical approaches like voxel-based morphometry. In this study, we aim to address both, modeling uncertainty and providing visual explanations to explore physiological patterns in brain ageing. T1-weighted brain MRI datasets of 10691 participants of the German National Cohort Study, drawn from the general population, were included in this study (chronological age from 20 to 72 years). A regression model based on a 3D Convolutional Neural Network taking into account aleatoric noise was implemented for global as well as regional brain age estimation. We observed high overall accuracy of global brain age estimation with a mean absolute error of 3.2 ± 2.5 years and mean uncertainty of 2.9 ± 0.6 years. Regional brain age estimation revealed higher estimation accuracy and lower uncertainty in central compared to peripheral brain regions. Visual explanations illustrating the importance of brain sub-regions were generated using Grad-CAM: the derived saliency maps showed a high relevance of the lateral and third ventricles, the insular lobe as well as parts of the basal ganglia and the internal capsule.
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- 2021
48. Uncertainty-Based Biological Age Estimation of Brain MRI Scans
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Wenbin Shi, Karim Armanious, Sergios Gatidis, Sherif Abdulatif, Bin Yang, and Tobias Hepp
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FOS: Computer and information sciences ,Computer science ,Biological age ,Computer Vision and Pattern Recognition (cs.CV) ,Population ,Computer Science - Computer Vision and Pattern Recognition ,030218 nuclear medicine & medical imaging ,Correlation ,03 medical and health sciences ,0302 clinical medicine ,Brain mri ,medicine ,FOS: Electrical engineering, electronic engineering, information engineering ,education ,Organ system ,Estimation ,education.field_of_study ,Modalities ,medicine.diagnostic_test ,business.industry ,Image and Video Processing (eess.IV) ,Magnetic resonance imaging ,Pattern recognition ,Electrical Engineering and Systems Science - Image and Video Processing ,Artificial intelligence ,business ,030217 neurology & neurosurgery - Abstract
Age is an essential factor in modern diagnostic procedures. However, assessment of the true biological age (BA) remains a daunting task due to the lack of reference ground-truth labels. Current BA estimation approaches are either restricted to skeletal images or rely on non-imaging modalities that yield a whole-body BA assessment. However, various organ systems may exhibit different aging characteristics due to lifestyle and genetic factors. In this initial study, we propose a new framework for organ-specific BA estimation utilizing 3D magnetic resonance image (MRI) scans. As a first step, this framework predicts the chronological age (CA) together with the corresponding patient-dependent aleatoric uncertainty. An iterative training algorithm is then utilized to segregate atypical aging patients from the given population based on the predicted uncertainty scores. In this manner, we hypothesize that training a new model on the remaining population should approximate the true BA behavior. We apply the proposed methodology on a brain MRI dataset containing healthy individuals as well as Alzheimer's patients. We demonstrate the correlation between the predicted BAs and the expected cognitive deterioration in Alzheimer's patients., Comment: Accepted in ICASSP 2021. 5 pages, 4 figures. arXiv admin note: substantial text overlap with arXiv:2009.10765
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- 2021
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49. Uncertainty-Guided Progressive GANs for Medical Image Translation
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Yanbei Chen, Uddeshya Upadhyay, Sergios Gatidis, Tobias Hepp, and Zeynep Akata
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Computer science ,business.industry ,media_common.quotation_subject ,Fidelity ,Translation (geometry) ,Machine learning ,computer.software_genre ,Motion (physics) ,High fidelity ,Medical imaging ,Image translation ,Artificial intelligence ,business ,Correction for attenuation ,computer ,media_common ,Interpretability - Abstract
Image-to-image translation plays a vital role in tackling various medical imaging tasks such as attenuation correction, motion correction, undersampled reconstruction, and denoising. Generative adversarial networks have been shown to achieve the state-of-the-art in generating high fidelity images for these tasks. However, the state-of-the-art GAN-based frameworks do not estimate the uncertainty in the predictions made by the network that is essential for making informed medical decisions and subsequent revision by medical experts and has recently been shown to improve the performance and interpretability of the model. In this work, we propose an uncertainty-guided progressive learning scheme for image-to-image translation. By incorporating aleatoric uncertainty as attention maps for GANs trained in a progressive manner, we generate images of increasing fidelity progressively. We demonstrate the efficacy of our model on three challenging medical image translation tasks, including PET to CT translation, undersampled MRI reconstruction, and MRI motion artefact correction. Our model generalizes well in three different tasks and improves performance over state of the art under full-supervision and weak-supervision with limited data. Code is released here: https://github.com/ExplainableML/UncerGuidedI2I.
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- 2021
50. Overcoming Barriers to Data Sharing with Medical Image Generation: A Comprehensive Evaluation
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Stefan Bauer, August DuMont Schütte, Patrick Schwab, Jürgen Hetzel, Sergios Gatidis, Tobias Hepp, and Benedikt Dietz
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FOS: Computer and information sciences ,Computer science ,Image quality ,Computer Vision and Pattern Recognition (cs.CV) ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Computer Science - Computer Vision and Pattern Recognition ,Medicine (miscellaneous) ,Health Informatics ,Brain imaging ,Overfitting ,Machine learning ,computer.software_genre ,Synthetic data ,Article ,Medical research ,Health Information Management ,FOS: Electrical engineering, electronic engineering, information engineering ,Medical imaging ,Computed tomography ,business.industry ,Image and Video Processing (eess.IV) ,Electrical Engineering and Systems Science - Image and Video Processing ,Real image ,Computer Science Applications ,Data sharing ,Radiography ,ComputingMethodologies_PATTERNRECOGNITION ,Benchmark (computing) ,Artificial intelligence ,business ,computer ,Personally identifiable information - Abstract
Privacy concerns around sharing personally identifiable information are a major barrier to data sharing in medical research. In many cases, researchers have no interest in a particular individual's information but rather aim to derive insights at the level of cohorts. Here, we utilise generative adversarial networks (GANs) to create medical imaging datasets consisting entirely of synthetic patient data. The synthetic images ideally have, in aggregate, similar statistical properties to those of a source dataset but do not contain sensitive personal information. We assess the quality of synthetic data generated by two GAN models for chest radiographs with 14 radiology findings and brain computed tomography (CT) scans with six types of intracranial haemorrhages. We measure the synthetic image quality by the performance difference of predictive models trained on either the synthetic or the real dataset. We find that synthetic data performance disproportionately benefits from a reduced number of classes. Our benchmark also indicates that at low numbers of samples per class, label overfitting effects start to dominate GAN training. We conducted a reader study in which trained radiologists discriminate between synthetic and real images. In accordance with our benchmark results, the classification accuracy of radiologists improves with an increasing resolution. Our study offers valuable guidelines and outlines practical conditions under which insights derived from synthetic images are similar to those that would have been derived from real data. Our results indicate that synthetic data sharing may be an attractive alternative to sharing real patient-level data in the right setting., npj Digital Medicine, 4 (1), ISSN:2398-6352
- Published
- 2020
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