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1. Lipid Cooperativity as a General Membrane-Recruitment Principle for PH Domains

2. Prokaryotic ancestry and gene fusion of a dual localized peroxiredoxin in malaria parasites

3. A phylogeny-based benchmarking test for orthology inference reveals the limitations of function-based validation.

4. Annotation of the M. tuberculosis hypothetical orfeome: adding functional information to more than half of the uncharacterized proteins.

5. Identifying single copy orthologs in Metazoa.

6. Universally distributed single-copy genes indicate a constant rate of horizontal transfer.

7. A computational screen for type I polyketide synthases in metagenomics shotgun data.

8. A nitrile hydratase in the eukaryote Monosiga brevicollis.

9. Systematic association of genes to phenotypes by genome and literature mining.

10. Copy number variation analysis and targeted NGS in 77 families with suspected Lynch syndrome reveals novel potential causative genes

11. Lipid Cooperativity as a General Membrane-Recruitment Principle for PH Domains

12. Prokaryotic ancestry and gene fusion of a dual localized peroxiredoxin in malaria parasites

13. eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

14. SMART: recent updates, new developments and status in 2015

15. Recent improvements to the SMART domain-based sequence annotation resource

16. SMART 4.0: towards genomic data integration

17. Target-specific requirements for enhancers of decapping in miRNA-mediated gene silencing

18. mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes

19. Orthology prediction methods: A quality assessment using curated protein families

20. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

21. Quantitative assessment of protein function prediction from metagenomics shotgun sequences

22. Functional clues for hypothetical proteins based on genomic context analysis in prokaryotes

23. Systematic Identification of Novel Protein Domain Families Associated with Nuclear Functions

24. The Spir actin organizers are involved in vesicle transport processes

25. Prediction of structural domains of TAP reveals details of its interaction with p15 and nucleoporins

26. SMART: a web-based tool for the study of genetically mobile domains

27. Homology-based fold predictions for Mycoplasma genitalium proteins 1 1Edited by G. Von Heijne

28. Experimental characterization of the human non-sequence-specific nucleic acid interactome

29. Annotation of the M. tuberculosis Hypothetical Orfeome: Adding Functional Information to More than Half of the Uncharacterized Proteins

30. AMOP, a protein module alternatively spliced in cancer cells

31. Identifying single copy orthologs in Metazoa

32. SMART 7: recent updates to the protein domain annotation resource

33. A 15q24 microdeletion in transient myeloproliferative disease (TMD) and acute megakaryoblastic leukaemia (AMKL) implicates PML and SUMO3 in the leukaemogenesis of TMD/AMKL

34. Universally Distributed Single-Copy Genes Indicate a Constant Rate of Horizontal Transfer

35. eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

36. GRAM, a novel domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

37. Domains in plexins: links to integrins and transcription factors

38. A nitrile hydratase in the eukaryote monosiga brevicollis

39. Do human lipoxygenases have a PDZ regulatory domain?

40. Discovering functional novelty in metagenomes: examples from light-mediated processes

41. eggNOG: automated construction and annotation of orthologous groups of genes

42. STRING 7--recent developments in the integration and prediction of protein interactions

43. Computational characterization of multiple Gag-like human proteins

44. Toward automatic reconstruction of a highly resolved tree of life

45. Systematic association of genes to phenotypes by genome and literature mining

46. DCD - a novel plant specific domain in proteins involved in development and programmed cell death

47. Global analysis of bacterial transcription factors to predict cellular target processes

48. BSD: a novel domain in transcription factors and synapse-associated proteins

49. Protein domain analysis in the era of complete genomes

50. CASH--a beta-helix domain widespread among carbohydrate-binding proteins

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